Citrus Sinensis ID: 019087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MEVMPPQIFGFAEPVCERPQPQCTCITTNSVRNFAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEcccEEEcccEEEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEccccccccccccccccccccccccccEEcccEEEEEEEEEEEccccccccccccccccccccEEEEEcccccccccccccccEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEEEEEEcccccccccccccccccccccccccEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHcEEcccccccccEEEEEccHHHHHHHccccEcccEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEcccEEEEEccccccccccccEEHHHcccccccEEEccEEEEEEEEEEEccccccccccEEEcccccccEEEEEEEccHHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcEEEcccccccccccccEEHHHHccccccEEEccEEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mevmppqifgfaepvcerpqpqctcittnsvrnfaatgdeidrfalsisgaspthyTVKINSFSLLLKTSVEkyetgdfeaggykWKLVLypagnksknVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLklewgfdefipikafndasngflledtCVFGAEVFVckerstgkgeclsmikdapsikhvWRIENFSKLrseccdsqvfnsgdqkwkiqlypkgrrhgtgTHLAMYLALAdsatltpgskiyAEFTVRLLDQVQARHIAGkanfwfsasnpesgwARYVSFAyfnnpgngclvkdvcsVEAEVTVHGVSNAL
Flexible Loop (DISEMBL)
MEVMPPQIFGFAEPVCERPQPQCTCITTNSVRNFAATGDEIDRFALsisgaspthYTVKINSFSLLLKTSVEKYEtgdfeaggyKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCkerstgkgeclsmikdapsikhVWRIENFSKLRSECCDsqvfnsgdqkwkiQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Low Complexity Region (SEG)
MEVMPPQIFGFAEPVCERPQPQCTCITTNSVRNFAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Disordered region (IsUnstruct)
*******IFGFAEPVCERPQPQCTCITTNSVRNFAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVH******
Disordered Region (DISOPRED)
****PPQ**********************************************THYTVKINSFSLLLKT*V*KYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Disordered Region (DISEMBL)
MEVMPPQIFGFAEPVCERPQPQCTCITTNSVRNFAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Disordered Region (DISPRO)
******************************************RFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVMPPQIFGFAEPVCERPQPQCTCITTNSVRNFAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.387	0.120	0.347	6e-17
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.387	0.120	0.347	4e-16
Q8RY18	1055	MATH domain-containing pr	no	no	0.407	0.133	0.305	5e-08
Q9M8J9	406	BTB/POZ and MATH domain-c	no	no	0.381	0.325	0.275	2e-05
Q9SRV1	465	BTB/POZ and MATH domain-c	no	no	0.245	0.182	0.307	3e-05
Q8L765	407	BTB/POZ and MATH domain-c	no	no	0.381	0.324	0.275	4e-05
O22286	408	BTB/POZ and MATH domain-c	no	no	0.476	0.404	0.248	8e-05
Q1EBV6	410	BTB/POZ and MATH domain-c	no	no	0.202	0.170	0.342	0.0001
A1L4W5	415	BTB/POZ and MATH domain-c	no	no	0.202	0.168	0.328	0.0007

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 206 KDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALAD 265
           +D P++K  W I NFS+  +    S VF  G  KW+I ++PKG       HL+MYL ++D
Sbjct: 50  EDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVSD 106

Query: 266 SATLTPGSKIYAEFTVRLLDQVQARHIAGK-ANFWFSASNPESGWARYVSFAYFNNPGNG 324
           +A+L  G   YA+F++ +++Q+  R+   K     F+A   + G+  ++  +   +P  G
Sbjct: 107 AASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRG 166

Query: 325 CLVKDVCSVEAEVTVHGV 342
            LV D   VEAEV V  V
Sbjct: 167 YLVNDTVLVEAEVAVRKV 184

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 206 KDAPSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALAD 265
           +D PS+K  W I  F++L +    S VF  G  KW+I ++PKG       HL+MYL +AD
Sbjct: 49  EDPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVAD 105

Query: 266 SATLTPGSKIYAEFTVRLLDQVQARH-IAGKANFWFSASNPESGWARYVSFAYFNNPGNG 324
           +A L  G   Y++F++ +++QV  R+ I  +    F+A   + G+  ++  +    P  G
Sbjct: 106 AANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRG 165

Query: 325 CLVKDVCSVEAEVTVHGV 342
            LV D   +EAEV V  V
Sbjct: 166 YLVNDTVLIEAEVAVRKV 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 16/157 (10%)

Query: 50  GASPTHYTVKINSFSLLLKTSVEKYE-TGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVY 107
           G+ P+    K N++++   + + K E  GD FE GGYKW +++YP G    +V  H+S++
Sbjct: 61  GSKPSQLFGK-NTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGC---DVCNHLSLF 116

Query: 108 LAMANTSSLQLGWEVYAVFRLFLLDQNKD-NFLILQDAMGAERRFHRLKLEWGFDEFIPI 166
           L +A+   L  GW  +A F + +   NKD       D +    RF + + +WG+ +FI +
Sbjct: 117 LCVAHHEKLLPGWSHFAQFTIAV--SNKDPKKSKHSDTL---HRFWKKEHDWGWKKFIEL 171

Query: 167 KAFNDASNGFLLEDTCV-FGAEVFVCKERSTGKGECL 202
               +   GF+ +  C+   A+V V +ER      CL
Sbjct: 172 PKLKE---GFIDDSGCLTIKAQVQVIRERVDRPFRCL 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 13/145 (8%)

Query: 59  KINSFSLLLKTSVEKYETGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ 117
           KI+ +SL+    + KY   D F  GGY W +  YP G   ++   ++S+++A+A+     
Sbjct: 38  KISGYSLVKGMGIGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSVYVSLFIALASE---- 93

Query: 118 LGWEVYAVFRLFLLDQNKDNFLILQDAMG--AERRFHRLKLE---WGFDEFIPIKAFNDA 172
            G +V A+F L L+DQ+ +    +    G   E   + LK     WG+  F         
Sbjct: 94  -GADVRALFELTLVDQSGNERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRSLLE-- 150

Query: 173 SNGFLLEDTCVFGAEVFVCKERSTG 197
           S+ +L ++  +    V V K R+ G
Sbjct: 151 SSDYLKDNGLLVRCCVGVVKSRTEG 175

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 45  ALSISGASPTHYTVKINSFSLLLKTSVEKYETGD-FEAGGYKWKLVLYPAGNKSKNVKEH 103
           +LS++      ++  I  +SL     + K+   D F  GGY+W +  YP G   ++   +
Sbjct: 38  SLSVTQTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGGYQWAIYFYPDGKNPEDNSAY 97

Query: 104 ISVYLAMANTSSLQLGWEVYAVFRLFLLDQN 134
           +SV++A+A+      G +V A+F L LLDQ+
Sbjct: 98  VSVFIALASD-----GTDVRALFELSLLDQS 123

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 59  KINSFSLLLKTSVEKYETGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ 117
           KI  +SL     V KY   D F  GGY W +  YP G   ++   ++S+++A+A+     
Sbjct: 39  KICGYSLAKGVGVGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSSYVSLFIALASE---- 94

Query: 118 LGWEVYAVFRLFLLDQNKDNFLILQDAMG--AERRFHRLKLE---WGFDEFIPIKAFNDA 172
            G +V A+F L L+DQ+ +    +    G   +   + LK     WG+  F    +    
Sbjct: 95  -GADVRALFELTLVDQSGNGKHKVHSHFGRALDSGPYTLKYRGSMWGYKRFFRRSSLE-- 151

Query: 173 SNGFLLEDTCVFGAEVFVCKERSTG 197
           S+ +L E++ +    V V K  + G
Sbjct: 152 SSDYLKENSLLVRCRVGVVKSVTEG 176

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 28/193 (14%)

Query: 60  INSFSLLLKTSVEKYETGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQL 118
           I  +SL    S  K+   D F  GGY W +  YP G   ++   +IS+++A+A+ S+   
Sbjct: 31  IQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDSN--- 87

Query: 119 GWEVYAVFRLFLLDQNKDNFLILQDAM--GAERRFHRLKLE---WGFDEFIPIKAFNDAS 173
             ++ A+F L L+DQ+      +        E   + LK +   WG+  F    A    +
Sbjct: 88  --DIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGYKRFFKRSALE--T 143

Query: 174 NGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQV- 232
           + +L +D  V    V V + R  G  +             V  + N  +   +  DS+V 
Sbjct: 144 SDYLKDDCLVINCTVGVVRARLEGPKQ----------YGIVLPLSNMGQGLKDLLDSEVG 193

Query: 233 ----FNSGDQKWK 241
               F  GD+ +K
Sbjct: 194 CDIAFQVGDETYK 206

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 60  INSFSLLLKTSVEKYETGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQL 118
           I  +SL     + K+   D F  GGY+W +  YP G   ++   ++SV++A+A+      
Sbjct: 35  IQGYSLAKGMGIGKHIASDNFSVGGYQWGIFFYPDGKNPEDNSSYVSVFIALASE----- 89

Query: 119 GWEVYAVFRLFLLDQN 134
           G EV A+F L L+DQ+
Sbjct: 90  GTEVRALFELALVDQS 105

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 60  INSFSLLLKTSVEKYETGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQL 118
           I  +SL     V K+   D F  GGY+W + +YP G   ++   ++SV++ +A+  +   
Sbjct: 42  IQGYSLAKGIGVGKHIASDNFSVGGYQWTIFVYPDGKNPEDNSSYVSVFIVLASECT--- 98

Query: 119 GWEVYAVFRLFLLDQN 134
             EV A+F L L+DQ+
Sbjct: 99  --EVRALFELSLVDQS 112

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.893	1.0	0.645	1e-119
21537273	309	unknown [Arabidopsis thaliana]	0.890	0.996	0.647	1e-119
18401489	309	TRAF-like family protein [Arabidopsis th	0.890	0.996	0.647	1e-115
11994555	304	unnamed protein product [Arabidopsis tha	0.858	0.976	0.66	1e-114
255556544	455	nucleic acid binding protein, putative [	0.849	0.646	0.623	1e-106
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.867	0.964	0.603	1e-105
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.893	0.977	0.580	1e-104
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.893	0.977	0.583	1e-104
356519881	310	PREDICTED: uncharacterized protein LOC10	0.881	0.983	0.593	1e-103
255636923	276	unknown [Glycine max]	0.763	0.956	0.606	2e-95

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/313 (64%), Positives = 247/313 (78%), Gaps = 4/313 (1%)

Query: 34  FAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPA 93
            A++GD  D    SIS A PTHY VKI SFSLL K ++E+YET  FEAGGYKWKLVLYP 
Sbjct: 1   MASSGDH-DEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPN 59

Query: 94  GNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHR 153
           GNKSKN K+H+SVYLA+A++SSL  GWEVYAVFRL+LLDQNKDN+LILQ   G ERRFH 
Sbjct: 60  GNKSKNTKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHA 116

Query: 154 LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKH 213
           +K EWGFD+FIP   F+DASNG+L+EDTC+FGA+VFV KER +G+GECLSMIKDA S KH
Sbjct: 117 VKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKH 176

Query: 214 VWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGS 273
           VW+IENFSKL  E  DS  F +GD+KWK++ YP G + GTGTHL++YL L D  T++ G+
Sbjct: 177 VWKIENFSKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVDPETISDGT 236

Query: 274 KIYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSV 333
           KI+ EFT+R+ DQ+Q RHIAGK   WFS S+ E GW +YVS  YF  P +G L+KDVC V
Sbjct: 237 KIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLV 296

Query: 334 EAEVTVHGVSNAL 346
           EA+V VHG+++A+
Sbjct: 297 EADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/312 (64%), Positives = 247/312 (79%), Gaps = 4/312 (1%)

Query: 35  AATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAG 94
           A++GD  D    SIS A PTHY VKI SFSLL K ++E+YET  FEAGGYKWKLVLYP G
Sbjct: 2   ASSGD-YDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNG 60

Query: 95  NKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRL 154
           NKSKN K+H+SVYLA+A++SSL  GWEVYAVFRL+LLDQNKDN+LILQ   G ERRFH +
Sbjct: 61  NKSKNTKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSV 117

Query: 155 KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHV 214
           K EWGFD+FIP   F+D+SNG+L+EDTC+FGA+VFV KER +G+GECLSMIKDA S KHV
Sbjct: 118 KREWGFDKFIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHV 177

Query: 215 WRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSK 274
           W+IENFSKL  E  DS  F +GD+KWKI+ YP G + GTGTHL++YL L D  T++ G+K
Sbjct: 178 WKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTK 237

Query: 275 IYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVE 334
           I+ EFT+R+ DQ+Q RHIAGK   WFS S+ E GW +YVS  YF  P +G L+KDVC VE
Sbjct: 238 IFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVE 297

Query: 335 AEVTVHGVSNAL 346
           A+V VHG+++A+
Sbjct: 298 ADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/312 (64%), Positives = 247/312 (79%), Gaps = 4/312 (1%)

Query: 35  AATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAG 94
           A++GD  D    SIS A PTHY VKI SFSLL K ++E+YET  FEAGGYKWKLVLYP G
Sbjct: 2   ASSGD-YDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNG 60

Query: 95  NKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRL 154
           NKSKN K+H+SVYL++A++SSL  GWEVYAVFRL+LLDQNKDN+LILQ   G ERRFH +
Sbjct: 61  NKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSV 117

Query: 155 KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHV 214
           K EWGFD+FIP   F+DASNG+L+EDTC+FGA+VFV KER +G+GECLSMIKDA S KHV
Sbjct: 118 KREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHV 177

Query: 215 WRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSK 274
           W+IENFSKL  E  DS  F +GD+KWKI+ YP G + GTGTHL++YL L D  T++ G+K
Sbjct: 178 WKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTK 237

Query: 275 IYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVE 334
           I+ EFT+R+ DQ+Q RHIAGK   WFS S+ E GW +YVS  YF  P +G L+KDVC VE
Sbjct: 238 IFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVE 297

Query: 335 AEVTVHGVSNAL 346
           A+V VHG+++A+
Sbjct: 298 ADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/300 (66%), Positives = 241/300 (80%), Gaps = 3/300 (1%)

Query: 47  SISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 106
           SIS A PTHY VKI SFSLL K ++E+YET  FEAGGYKWKLVLYP GNKSKN K+H+SV
Sbjct: 8   SISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKNTKDHVSV 67

Query: 107 YLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPI 166
           YL++A++SSL  GWEVYAVFRL+LLDQNKDN+LILQ   G ERRFH +K EWGFD+FIP 
Sbjct: 68  YLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPT 124

Query: 167 KAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSE 226
             F+DASNG+L+EDTC+FGA+VFV KER +G+GECLSMIKDA S KHVW+IENFSKL  E
Sbjct: 125 GTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKE 184

Query: 227 CCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ 286
             DS  F +GD+KWKI+ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ DQ
Sbjct: 185 SYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQ 244

Query: 287 VQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL 346
           +Q RHIAGK   WFS S+ E GW +YVS  YF  P +G L+KDVC VEA+V VHG+++A+
Sbjct: 245 LQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/300 (62%), Positives = 231/300 (77%), Gaps = 6/300 (2%)

Query: 47  SISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 106
           ++S ASPTHYTVKI  FSLL   +VEKYE+G FEAGGYKWKLVLYP GNKSKNV EH+S+
Sbjct: 162 TMSDASPTHYTVKIQLFSLL---AVEKYESGSFEAGGYKWKLVLYPKGNKSKNVMEHLSL 218

Query: 107 YLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPI 166
           Y+AMA++S+LQLGWEV+ VFRLFLLDQ +DN+LIL    G E RFH  +LEWGFD+ IP+
Sbjct: 219 YIAMADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP---GKECRFHGFRLEWGFDQLIPL 275

Query: 167 KAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSE 226
               D  NG+L+EDTCVFGAEVFV KE  TGKGECLSMIK + + K++WR ENFSKL +E
Sbjct: 276 ATLKDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMIKSSSTSKNLWRFENFSKLDAE 335

Query: 227 CCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ 286
           C DS+ F +GDQ+WKIQLYPKG+  G+GTHL+++LALAD   +TPG KI A+FT+R+LDQ
Sbjct: 336 CNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILADFTLRILDQ 395

Query: 287 VQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL 346
            +  H+ GKANFWFSAS+   GW+R+          N  L KD C  EAE+TV G+++ L
Sbjct: 396 SRGSHLFGKANFWFSASSSVCGWSRFYPLDQLYASSNAYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 232/300 (77%)

Query: 47  SISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 106
           SI  ASP HY +KI SFSLL   S+E+YE+G FEAGG+KWKLVLYP+GNKSKNVK+HIS+
Sbjct: 11  SIVEASPVHYIMKIQSFSLLTTNSIERYESGRFEAGGHKWKLVLYPSGNKSKNVKDHISL 70

Query: 107 YLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPI 166
           YLA+  +SSL  GWE+Y  F+LF+ DQN DN+L+LQD +  E+RFHR+K+EWGFD+FIP+
Sbjct: 71  YLALEESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKVEWGFDQFIPL 130

Query: 167 KAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSE 226
           K FN  S G+LL+D C FGAEVFVC+E  TGKGE L M+KDA   KHVW I++FSKL SE
Sbjct: 131 KDFNIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWEIKDFSKLDSE 190

Query: 227 CCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ 286
           CCDS+ FN G+ KW+I+LYPKG+    G +LA+YL LA+  T+ PGSKIYA+  +R+LDQ
Sbjct: 191 CCDSKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLANPTTIPPGSKIYAQTILRILDQ 250

Query: 287 VQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL 346
            Q++H   KAN+WFSAS+ E G +R++  + F +   G LVKD+C V+ EVTV GV +AL
Sbjct: 251 KQSKHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVEVTVLGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/310 (58%), Positives = 234/310 (75%), Gaps = 1/310 (0%)

Query: 38  GDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKS 97
           GD+ID  +  +S   P HYTVKI SFSLL K SV+++E+G+FEAGGYKWKLVL+P G+KS
Sbjct: 6   GDDIDEISRYVSDVPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKWKLVLHPHGDKS 65

Query: 98  KNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLE 157
           KN  +HIS+YL +A T SLQ  WEV+ V+RLFLLDQNKDN+L ++D     RRF  +K +
Sbjct: 66  KNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQ 125

Query: 158 WGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER-STGKGECLSMIKDAPSIKHVWR 216
           WGFD++I +K F ++SNG+L++D CVFGAEVFVCKE    GKGECLSMIK   + KHVW+
Sbjct: 126 WGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWK 185

Query: 217 IENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIY 276
           I+NFSKL +E  +S++FN+GD+KWKI++YPKG   G G+HL+ YL LAD A L P +KIY
Sbjct: 186 IDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIY 245

Query: 277 AEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAE 336
           AE T+RL DQ+ ++H +GK ++WFSASNPE G  R++    F  P  G LVKD   VEAE
Sbjct: 246 AEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAE 305

Query: 337 VTVHGVSNAL 346
           V++ GV+NA 
Sbjct: 306 VSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/310 (58%), Positives = 233/310 (75%), Gaps = 1/310 (0%)

Query: 38  GDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKS 97
           GD+ID  +  +S   P HYTVKI SFSLL K SV+++E+G+FEAGGYKWKLVL+P G+KS
Sbjct: 6   GDDIDEISRYVSDVPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKWKLVLHPHGDKS 65

Query: 98  KNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLE 157
           KN  +HIS+YL +A T SLQ  WEV+ V+RLFLLDQNKDN+L ++D     RRF  +K +
Sbjct: 66  KNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQ 125

Query: 158 WGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER-STGKGECLSMIKDAPSIKHVWR 216
           WGFD++I +K F ++SNG+L++D CVFGAEVFVCKE    GKGECLSMIK   + KHVW+
Sbjct: 126 WGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWK 185

Query: 217 IENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIY 276
           I+NFSKL +E  +S++FN+GD+KWKI++YPKG   G G+HL+ YL LAD A L P +KIY
Sbjct: 186 IDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIY 245

Query: 277 AEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAE 336
           AE T+RL DQ+ ++H +GK ++WFSASNPE G  R++    F  P  G LVKD   VEAE
Sbjct: 246 AEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAE 305

Query: 337 VTVHGVSNAL 346
           V V GV+NA 
Sbjct: 306 VNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/305 (59%), Positives = 230/305 (75%)

Query: 42  DRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVK 101
           D    S   A P HY +KI SFSLL K S+E+YE+G FEAGGYKWKLVLYP+GNKSKN++
Sbjct: 5   DAIPRSTVDAPPAHYVMKIQSFSLLAKNSIERYESGKFEAGGYKWKLVLYPSGNKSKNIR 64

Query: 102 EHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFD 161
           EHIS+YLA+ +TSSL  GWE+Y  FR FL DQ  DN+L+  D +  ERRFH++K EWG D
Sbjct: 65  EHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGID 124

Query: 162 EFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFS 221
           +FIP++ FN AS G+L++DTC FGAEVFVCKERSTGKGECL M+K+A   KH++  +N S
Sbjct: 125 QFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFDNLS 184

Query: 222 KLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTV 281
           KL  EC DS+ FN+G+ KWKI+LYPKG+    G +L++YLALAD + L+P SKIYA+ T+
Sbjct: 185 KLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQITL 244

Query: 282 RLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341
           R+LDQ QA+H  GKAN+WFSAS+ E+G A ++    F N   G +VKD C VEAEV + G
Sbjct: 245 RILDQKQAKHHFGKANYWFSASSHENGAAIFMPINNFTNQNFGYVVKDSCFVEAEVIILG 304

Query: 342 VSNAL 346
           V +AL
Sbjct: 305 VVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636923|gb|ACU18794.1| unknown [Glycine max]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 165/272 (60%), Positives = 211/272 (77%)

Query: 42  DRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVK 101
           D    S   A P HY +KI SFSLL K S+E+YE+G FEAGGYKWKLVLYP+GNKSKN++
Sbjct: 5   DAIPRSTVDAPPAHYVMKIQSFSLLAKNSIERYESGKFEAGGYKWKLVLYPSGNKSKNIR 64

Query: 102 EHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFD 161
           EHIS+YLA+ +TSSL  GWE+Y  FR FL DQ  DN+L+  D +  ERRFH++K EWG D
Sbjct: 65  EHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGID 124

Query: 162 EFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFS 221
           +FIP++ FN AS G+L++DTC FGAEVFVCKERSTGKGECL M+K+A   KH++  +N S
Sbjct: 125 QFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFDNLS 184

Query: 222 KLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTV 281
           KL  EC DS+ FN+G+ KWKI+LYPKG+    G +L++YLALAD + L+P SKIYA+ T+
Sbjct: 185 KLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQITL 244

Query: 282 RLLDQVQARHIAGKANFWFSASNPESGWARYV 313
           R+LDQ QA+H  GKAN+WFSAS+ E+G A ++
Sbjct: 245 RILDQKQAKHHFGKANYWFSASSHENGAAIFM 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.890	0.996	0.647	1.6e-111
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.806	0.736	0.320	4.3e-38
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.829	0.683	0.317	4.4e-36
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.797	0.745	0.306	1.2e-35
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.829	0.82	0.327	1.2e-35
TAIR|locus:2118465	297	AT4G09770 "AT4G09770" [Arabido	0.823	0.959	0.305	2.4e-35
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.829	0.817	0.313	6.5e-35
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.835	0.796	0.295	3.6e-34
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.716	0.679	0.327	9.5e-34
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.791	0.691	0.305	2.5e-33

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 202/312 (64%), Positives = 247/312 (79%)

Query:    35 AATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAG 94
             A++GD  D    SIS A PTHY VKI SFSLL K ++E+YET  FEAGGYKWKLVLYP G
Sbjct:     2 ASSGD-YDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNG 60

Query:    95 NKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRL 154
             NKSKN K+H+SVYL++A++SSL  GWEVYAVFRL+LLDQNKDN+LILQ   G ERRFH +
Sbjct:    61 NKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSV 117

Query:   155 KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHV 214
             K EWGFD+FIP   F+DASNG+L+EDTC+FGA+VFV KER +G+GECLSMIKDA S KHV
Sbjct:   118 KREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHV 177

Query:   215 WRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSK 274
             W+IENFSKL  E  DS  F +GD+KWKI+ YP G + GTGTHL++YL L D  T++ G+K
Sbjct:   178 WKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTK 237

Query:   275 IYAEFTVRLLDQVQARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVE 334
             I+ EFT+R+ DQ+Q RHIAGK   WFS S+ E GW +YVS  YF  P +G L+KDVC VE
Sbjct:   238 IFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVE 297

Query:   335 AEVTVHGVSNAL 346
             A+V VHG+++A+
Sbjct:   298 ADVCVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 93/290 (32%), Positives = 150/290 (51%)

Query:    53 PTHYTVKINSFSLLLK-TSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMA 111
             P+ Y++K+ SF+ LLK T  EKY +  F  GGY W LV++P GNK  +   ++S+Y+A+ 
Sbjct:    85 PSSYSLKMESFNTLLKSTYTEKYVSRPFSVGGYNWTLVVFPNGNKKDSGSGYLSLYVAID 144

Query:   112 NTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFND 171
             N++  Q   E+YA  R ++ ++N+  +  +QD      +F   K  WGF + +PI  F D
Sbjct:   145 NSTLGQQ--EIYADLRFYIFNKNERKYFTIQDT--DVWKFSVFKTMWGFSQVLPIDTFKD 200

Query:   172 ASNGFLLE-DTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDS 230
              + G+L + D C FG +V +       K E  S+ ++  + +  W I  FS L      S
Sbjct:   201 PTKGYLYDGDHCEFGVDVTMPSLYE--KSELFSVTENFLNPRFTWTIRGFSTLLKNSYLS 258

Query:   231 QVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQAR 290
             +VF+ G + W IQ+ P G   G G  L+MYL L  +    P  KIY    +R L+Q+   
Sbjct:   259 EVFSIGGRSWNIQINPSGLGTGEGKALSMYLGLNVNEIFRPYEKIYVRAKLRALNQLNLS 318

Query:   291 HIAGKANFWFSASN-PESGWA--RYVSFAYFNNPGNGCLVKDVCSVEAEV 337
             +I  + + W++     E  W    ++ F Y  +   G +  DV  V+ E+
Sbjct:   319 NIERELDIWYNGPGYGEYSWGFPEFIYFPYLTDSSKGFVKNDVLMVQVEM 368

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 93/293 (31%), Positives = 149/293 (50%)

Query:    53 PTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMAN 112
             P++  + I SFS++ K   E YE+  FEAGGYKW+LVLY  GN++     HIS+Y+ +  
Sbjct:   129 PSNKILTITSFSVI-KGRGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHISLYVRIEE 187

Query:   113 TSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDA 172
             T SL  GWEV    +LF+ +  +  +LI++D  G  +R++  K EWG+ + IP+  F D 
Sbjct:   188 TESLPKGWEVNVELKLFVYNGKQRKYLIVKD--GIVKRYNDAKKEWGYGKLIPLTTFLDT 245

Query:   173 SNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQV 232
             + G+L +D   FGAE+F     +    E ++ I + P+    W+I +FS L  +   S  
Sbjct:   246 NEGYLEQDIASFGAEIF--SGTAVQVQEKVTFISNPPNNVFTWKILHFSNLEDKFYYSDD 303

Query:   233 FNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHI 292
             F   D+ W++   PKG   G    + ++L           +  +    +RL +Q  + H 
Sbjct:   304 FLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQRSSNHA 363

Query:   293 AGKANFWF-SASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSN 344
                +  W+ + S+   G    +S A FN+   G  V D    EAE+    V+N
Sbjct:   364 QIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGYSVNDSIIFEAEMVKVSVTN 416

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 88/287 (30%), Positives = 145/287 (50%)

Query:    53 PTHYTVKINSF-SLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVK-EHISVYLAM 110
             P+ Y +KI SF       + EKYE+  FE+GGY W L++YP GN  +     ++S+Y+ +
Sbjct:    80 PSTYCLKIESFIKFATSPNAEKYESRPFESGGYNWTLIVYPKGNIKEGAPLNYVSMYVQI 139

Query:   111 ANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFN 170
              N++ L    EVYA  + F+ ++ +D +L  Q+     +RF   K  WG+    P     
Sbjct:   140 DNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQETDA--KRFFLFKPYWGYGNVRPYTDVA 197

Query:   171 DASNGFLLE-DTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 229
             + + G+L + D  +FG +VFV +  +  K E  S  K      + W + NFS L  +   
Sbjct:   198 NPNAGWLFDGDNVLFGVDVFVTEVFN--KWEVFSFTKSLHDRLYKWTLPNFSSLEKQYYV 255

Query:   230 SQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQA 289
             S  F  G + W +++YP G   G G  L++Y+   D   + P  KIY +  +R+++Q  +
Sbjct:   256 SDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVD---VKPYDKIYLKAKLRIINQRDS 312

Query:   290 RHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAE 336
             +H+  K   W   +N   G+ ++V FA   +   G LV D   +E E
Sbjct:   313 KHMEKKVESWSDQAN-SWGFQKFVPFADLKDTSKGLLVNDTLKMEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 96/293 (32%), Positives = 144/293 (49%)

Query:    53 PTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMAN 112
             P+   V I SFS++ K   E YE+  FEA GYKW+LVLY  GNK+    +HIS+Y  +  
Sbjct:    59 PSSKIVTITSFSVI-KGRGEPYESSVFEAAGYKWRLVLYVNGNKNDGGNDHISLYARIEE 117

Query:   113 TSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDA 172
             T+SL LGWEV    +LF+ +     +L + D  G  +R++  K EWGF + IP   F +A
Sbjct:   118 TNSLPLGWEVNVDLKLFVHNGKLHKYLTVTD--GLVKRYNNAKKEWGFGQLIPRSTFYNA 175

Query:   173 SNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQV 232
             + G+L +DT  FGAE+F+ K     + E ++ I + P+    W+I  FS L  +   S  
Sbjct:   176 NEGYLDQDTGSFGAEIFIVKPAQ--QQEKVTFISNPPNNVFTWKILRFSTLEDKFYYSDD 233

Query:   233 FNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHI 292
             F   D+ W++   PKG   G    L ++L           +  +    +RL +Q    H 
Sbjct:   234 FLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGAVNLRLKNQRSTNHR 293

Query:   293 AGKANFWFS-ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSN 344
                +  W+   S    G    +  A  N+   G LV D    EAE+    ++N
Sbjct:   294 QIYSAAWYPIGSGYGVGVNNIILLADLNDASKGYLVNDAIIFEAEMVKVSITN 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2118465 AT4G09770 "AT4G09770" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 92/301 (30%), Positives = 160/301 (53%)

Query:    47 SISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 106
             +I   +P+ Y +K+  FS + K S + YE+ DF+ GG+KW+L+ YPAG   +  K+H+S+
Sbjct:     3 TIREEAPSSYLMKLVGFSEV-KFSHQPYESADFDVGGHKWRLIFYPAGKLEEGGKDHVSI 61

Query:   107 YLAMANT-SSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIP 165
             Y  + N  +S+Q+  E+    + F+ + N   + + QD  G  + +++ K E GF + + 
Sbjct:    62 YARIENVGASMQIDAEL----KFFIYNHNNKQYSVFQD--GTMKHYNKEKKECGFAQMLL 115

Query:   166 IKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRS 225
                FND  NG++  + C+ G E+FV K     K E +   ++ P  K  W+I +FS +  
Sbjct:   116 FSKFNDPKNGYIDGNACIVGVEIFVIKPIE--KVERVVFTQNPPENKFTWKISHFSYIGD 173

Query:   226 E-CCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLL 284
             +    S  F  GD+KW++++ PKG +      L++Y+           S  YA+  +RLL
Sbjct:   174 KRYYYSDEFVVGDRKWRLKISPKGDKKVRA--LSVYVQAMAYLPNAVASSTYAKLRLRLL 231

Query:   285 DQVQARHIAGKANFWFSASNPE-SGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS 343
             +Q  + HI  +   ++S  N + SG +  +S    N+   G LV+D  S+  E T+  VS
Sbjct:   232 NQKNSNHIEKRVFHFYSRENGDGSGISELISVEDLNDESKGYLVED--SIVLETTLLWVS 289

Query:   344 N 344
             +
Sbjct:   290 D 290

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 92/293 (31%), Positives = 143/293 (48%)

Query:    53 PTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMAN 112
             P+   V I SFS++ K   E YE+  FEA GYKW+LVLY  GN    +  HIS+Y  +  
Sbjct:    60 PSSKIVTITSFSVI-KDRGEPYESSIFEAAGYKWRLVLYVKGNPKGGINNHISLYARIEE 118

Query:   113 TSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDA 172
             T +L  GWEV    +LF+ ++    +L + D  G  +R++  K EWGF + I +  F +A
Sbjct:   119 TETLPRGWEVNVDLKLFVHNRKLKKYLSVTD--GTVKRYNDAKKEWGFTQLISLPTFYNA 176

Query:   173 SNGFLLEDTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQV 232
             + G+L++DT  FGAE+F+     T K E ++ I + P     W+I  FS L  +   S  
Sbjct:   177 NEGYLVQDTASFGAEIFIVNP--TEKQEKVTFISNPPDNVFTWKILRFSTLEDKFYYSDD 234

Query:   233 FNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARHI 292
             F  GD+ W++   PKG   G    L ++L           +  +    +RL +Q  + H 
Sbjct:   235 FLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAVNLRLKNQRSSNHK 294

Query:   293 AGKANFWFSA-SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSN 344
                +  W+   S+   G    +  +   +   G +V D    EAE+    V+N
Sbjct:   295 QLYSAAWYPIRSDYGVGVNNIILMSELKDASKGYMVNDAIIFEAEMVKVSVTN 347

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 89/301 (29%), Positives = 153/301 (50%)

Query:    53 PTHYTVKINSFSLLLKTS-VEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMA 111
             P+ Y++K+ SF+ L+K+   E+YE+  F  G Y W LV+YP GNK+ N   HIS+Y+ + 
Sbjct:    66 PSSYSLKMESFNTLMKSVYTERYESRPFRVGRYNWTLVVYPKGNKNDNGTGHISLYVVLD 125

Query:   112 NTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFND 171
             N++      EV+   R ++ ++ +  +  +QD      RF  +K  WGF + +P+  FN+
Sbjct:   126 NSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT--DVWRFSAIKRMWGFSKVLPLITFNN 183

Query:   172 ASNGFLLE-DTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDS 230
               NG+L + D C FG +V +       K E  S+ K  PS +  W I+ +S L ++   S
Sbjct:   184 LKNGYLYDVDHCEFGVDVIIPPFYE--KSEVFSVTKSFPSPRFTWYIQGYSTLPTDYL-S 240

Query:   231 QVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT--PGSKIYAEFTVRLLDQV- 287
             + F  G + W ++++  G     G +L++YL L     L   P  K+Y    +R+ +Q  
Sbjct:   241 EEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPYDKVYVRAKLRVPNQFG 300

Query:   288 -QARHIAGKA-NFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNA 345
              Q+  +  +  + WFS      G+A ++  +   N   G LV D+  V+  +     +N 
Sbjct:   301 SQSNLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSSKGFLVNDMLVVQVAMEEISSTNY 360

Query:   346 L 346
             L
Sbjct:   361 L 361

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 87/266 (32%), Positives = 141/266 (53%)

Query:    53 PTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMAN 112
             P+ Y++KIN  S L   + +KYE+  F +GGY W+LV+YP GN+       IS+Y+   N
Sbjct:    98 PSSYSLKINKLSQL---TFDKYESHRFLSGGYNWRLVIYPKGNEKDKGSGFISMYVEFDN 154

Query:   113 TS-SLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFND 171
             T  S     EV+A    F+ ++ ++ +  +QD     +RF+ L+  WG  + + ++ FND
Sbjct:   155 TKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDV--EVKRFNALRTVWGLSQVLSLETFND 212

Query:   172 ASNGFLLE-DTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDS 230
               NG+  E + C FG +V V    +  K E +S  +    +K  W +++FS L+ E   S
Sbjct:   213 LENGYTFEGEQCEFGVDVMVASPIT--KWEVVSFDEKLDILKFSWSVKDFSVLKEEFYVS 270

Query:   231 QVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQAR 290
             + F+ G + W +Q+YPKG        L+++L L+ S TLT   KIY    +R+LD +   
Sbjct:   271 ERFSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLSGSETLTVDEKIYVIAHLRVLDPL--- 327

Query:   291 HIAGKANFWFSASNPESGWARYVSFA 316
                G    WF   N   G+  ++SF+
Sbjct:   328 ---GN---WFRDRNKGWGYLEFLSFS 347

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 89/291 (30%), Positives = 145/291 (49%)

Query:    53 PTHYTVKINSFSLLLKTSVE---KYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLA 109
             P  Y VK  SF  + K   E   KYE+  F  GGY W L++YP      +   ++S+Y+ 
Sbjct:    94 PNSYCVKFQSFVTMAKQVKENGGKYESRPFSVGGYNWTLLIYPVIYIPTDSGGYVSIYVR 153

Query:   110 MANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAF 169
             + N+S +    +VYA         + D + I Q+     +RFH  K +WG  +F+PI  F
Sbjct:   154 VDNSSLITNPKDVYAEITFLAYKSSTDKYQISQETEA--QRFHLFKQQWGLLQFLPIYYF 211

Query:   170 NDASNGFLLE-DTCVFGAEVFVCKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 228
              + + G+  E ++ VFG ++ + K       E  S  ++       WR+  FS    +  
Sbjct:   212 ENPAYGYFFEGESVVFGVDINIVKPFENW--EVFSNEQNIRDPIFEWRLTKFSTRFLDSY 269

Query:   229 DSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQ 288
              S  F+SG + W +++YP G  + TG  L++YL L+D +      K Y E  +R++DQ+Q
Sbjct:   270 TSDSFSSGGRNWALKVYPNGVGNATGNSLSLYL-LSDQSN----DKGYVEAKLRVIDQIQ 324

Query:   289 ARHIAGKANFWFSASNPESGWA--RYVSFAYFNNPGNGCLVKDVCSVEAEV 337
             + +   K   W +A+  E+GW   R++SFA   N   G LV D   +E ++
Sbjct:   325 SNNFEKKVAAWPNAT--ENGWGFDRFLSFADIKNTSKGFLVNDTLKLEVQI 373

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	9e-27
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	2e-23
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	1e-09
pfam00917	116	pfam00917, MATH, MATH domain	2e-09
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	4e-08
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-07
smart00061	95	smart00061, MATH, meprin and TRAF homology	4e-06
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	6e-06
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	3e-05
pfam00917	116	pfam00917, MATH, MATH domain	0.002

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score =  102 bits (255), Expect = 9e-27
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTP 271
           KH W+I NFS+L  E   S  F  G  KW+I++YP G    +G +L++YL L    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDG-ESGDYLSLYLELDKGESDLE 60

Query: 272 GSKIYAEFTVRLLDQVQARHIAGKANFWFSASNPES-GWARYVSFAYFNNPGNGCLVKDV 330
              + AEFT++L++Q   + ++      F +      G+ +++S+    +     LV D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYY--LVDDS 118

Query: 331 CSVEAEVT 338
            ++E EV 
Sbjct: 119 LTIEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 93.6 bits (233), Expect = 2e-23
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 10/134 (7%)

Query: 55  HYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTS 114
            +T KI +FS L     E   +  FE GGYKW++ +YP G+      +++S+YL +    
Sbjct: 2   KHTWKIVNFSELEG---ESIYSPPFEVGGYKWRIRIYPNGDGES--GDYLSLYLELDKGE 56

Query: 115 SLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASN 174
           S    W V A F L L++QN    L           F      WGF +FI      D  +
Sbjct: 57  SDLEKWSVRAEFTLKLVNQNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLED--S 111

Query: 175 GFLLEDTCVFGAEV 188
            +L++D+     EV
Sbjct: 112 YYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 54  THYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANT 113
             +T +I ++S L K    K  +  F+ GG++W+++L+P GN   +    +S+YL     
Sbjct: 1   QSFTWRIKNWSELEK----KVHSPKFKCGGFEWRILLFPQGN---SQTGGVSIYLEPHPE 53

Query: 114 SSLQL----GWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAF 169
              +      W V A F L + +    +   +Q +  A  RF+    +WGF  FI ++  
Sbjct: 54  EEEKAPLDEDWSVCAQFALVISNPGDPS---IQLSNVAHHRFNAEDKDWGFTRFIELRKL 110

Query: 170 NDASNGF---LLED 180
              +       LE+
Sbjct: 111 AHRTPDKPSPFLEN 124

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 67  LKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYL-AMANTSSLQLGWEVYAV 125
           +K     Y +   E  G  W+L +Y  G         + +YL          LGW +   
Sbjct: 7   IKEGENYYTSPYEERFGIPWRLRIYRNGG-------FLGLYLHCEKGEKDELLGWSIETE 59

Query: 126 FRLFLLDQN--KDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCV 183
           F L L+  N                  F +    +G+ +FI    ++D  N ++++DT +
Sbjct: 60  FTLKLVSDNGKSLTKRNKS------HVFTKPT-GYGWGKFIS---WDDLENDYVVDDTII 109

Query: 184 FGAEVFV 190
             AEV +
Sbjct: 110 IEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 11/164 (6%)

Query: 33  NFAATGDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYP 92
              + G  + +F   +       +T K+  +S L K    K E+  F  GG+ WK++L+P
Sbjct: 18  PDKSIGSILPQFDPDVEELLEMSFTWKVKRWSELAK----KVESPPFSVGGHTWKIILFP 73

Query: 93  AGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFH 152
            GN   NV    SVYL        + G + Y     F  D +   +  ++    +  RF 
Sbjct: 74  QGNNQCNV----SVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYPTIEYINKSHHRFS 129

Query: 153 RLKLEWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVCKE 193
               +WGF  FI +    + S G   FL E T V    V V K+
Sbjct: 130 MESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173

Length = 1089

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 213 HVWRIENFSKL-RSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTP 271
                +N S+L   E   S      +  W++++Y K         L++YL        + 
Sbjct: 2   LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSR 55

Query: 272 GSKIYAEFTVRLLDQ 286
              I AEFT++L+ Q
Sbjct: 56  KWSIEAEFTLKLVSQ 70

Length = 95

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 59  KINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQL 118
              + S L +   E Y +   E     W+L +Y      KN    +S+YL          
Sbjct: 5   TFKNVSRLEEG--ESYFSPSEEHFNIPWRLKIYR-----KN--GFLSLYLHCEKEECDSR 55

Query: 119 GWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFI 164
            W + A F L L+ QN  +          +  F +    WGF +FI
Sbjct: 56  KWSIEAEFTLKLVSQNGKSLSKKD-----KHVFEK-PSGWGFSKFI 95

Length = 95

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 56  YTVKINSFSLLLKTSVEKYETGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAMAN 112
           Y   I++FS   +   E  ++  F +G     KW L + P G   ++ K+++S+YL + +
Sbjct: 7   YMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLVS 65

Query: 113 TSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAER--RFHRLKLEWGFDEFIPIKAFN 170
                   EV A F+  +L+   +       AM ++R  RF + K +WGF +FI      
Sbjct: 66  C----PKSEVRAKFKFSILNAKGEET----KAMESQRAYRFVQGK-DWGFKKFIRRDFLL 116

Query: 171 DASNGFLLEDTCVFGAEVFVCKE 193
           D +NG L +D      EV V ++
Sbjct: 117 DEANGLLPDDKLTLFCEVSVVQD 139

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 211 IKHVWRIENFSKLRSECCD---SQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALA 264
             ++W I NFS  R E  +   S  F+SG     KW +++ PKG    +  +L++YL L 
Sbjct: 5   FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 265 DSATLTPGSKIYAEFTVRLLDQVQARHIAGKA-NFWFSASNPESGWARYVSFAYFNNPGN 323
                 P S++ A+F   +L+       A ++   +      + G+ +++   +  +  N
Sbjct: 65  SC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 324 GCLVKDVCSVEAEVTVHG 341
           G L  D  ++  EV+V  
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 15/127 (11%)

Query: 217 IENFSKLR--SECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGS- 273
           I+NFSK++       S         W++++Y  G        L +YL             
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRNGG------FLGLYLHCEKGEKDELLGW 54

Query: 274 KIYAEFTVRLLDQVQARHIAGKANFWFSASNPES-GWARYVSFAYFNNPGNGCLVKDVCS 332
            I  EFT++L+     + +  K N     + P   GW +++S   +++  N  +V D   
Sbjct: 55  SIETEFTLKLVSD-NGKSLT-KRNKSHVFTKPTGYGWGKFIS---WDDLENDYVVDDTII 109

Query: 333 VEAEVTV 339
           +EAEV +
Sbjct: 110 IEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.94
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.93
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.92
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.9
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.9
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.9
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.88
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.88
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.88
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.87
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.87
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.86
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.86
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.86
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.86
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.85
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.83
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.8
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.8
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.78
smart00061	95	MATH meprin and TRAF homology.	99.72
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.72
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.7
smart00061	95	MATH meprin and TRAF homology.	99.64
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.55
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.36
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.93
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.3
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.11
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.08
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.26
KOG0297	391	consensus TNF receptor-associated factor [Signal t	95.78

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=7.9e-27  Score=189.65  Aligned_cols=132  Identities=18%  Similarity=0.344  Sum_probs=110.4

Q ss_pred             CcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCC-CCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEE
Q 019087           53 PTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSK-NVKEHISVYLAMANTSSLQLGWEVYAVFRLFLL  131 (346)
Q Consensus        53 ~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~-~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll  131 (346)
                      .|+|+|+|+|||.+    ++.++|+.|.+||++|+|++||+|+... +..+||||||.|.... ....|++.|+|+|+|+
T Consensus         2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~   76 (137)
T cd03772           2 EATFSFTVERFSRL----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRII   76 (137)
T ss_pred             CcEEEEEECCcccC----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEE
Confidence            58999999999998    4789999999999999999999996521 3458999999997653 3347999999999999


Q ss_pred             eCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087          132 DQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK  192 (346)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~  192 (346)
                      |+++......+.   ..+.|......|||.+||+|++|.+++++||+||+|+|+|+|+|-+
T Consensus        77 ~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          77 NYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             cCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            998543333322   4568876677899999999999988889999999999999998865

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=1.4e-26  Score=187.44  Aligned_cols=125  Identities=26%  Similarity=0.559  Sum_probs=106.2

Q ss_pred             EEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC----CCCCCEEEEEEEEEE
Q 019087           55 HYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS----LQLGWEVYAVFRLFL  130 (346)
Q Consensus        55 ~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~----~~~~w~~~~~~~~~l  130 (346)
                      +|+|+|+|||.+    ++.++|++|.+|||+|+|.+||+|+. .  .+||||||.+.+...    .+.+|.+.|+|+|.|
T Consensus         2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l   74 (134)
T cd03775           2 SFTWRIKNWSEL----EKKVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVI   74 (134)
T ss_pred             cEEEEECCcccC----CcceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEE
Confidence            599999999996    47999999999999999999999976 2  789999999976433    246799999999999


Q ss_pred             EeCCCCceeEEeccccceeeecCCCccccccceeeccccccC----CCCceeCCEEEEEEEEE
Q 019087          131 LDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDA----SNGFLLEDTCVFGAEVF  189 (346)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~----~~~fl~dD~l~i~~~v~  189 (346)
                      +||.++.......   ..+.|+....+|||.+||++++|++|    ++|||+||+|+|++.|+
T Consensus        75 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          75 SNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             EcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            9998655433332   57899877789999999999999955    67999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.94  E-value=1.3e-26  Score=189.01  Aligned_cols=134  Identities=27%  Similarity=0.447  Sum_probs=111.3

Q ss_pred             CCCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEE
Q 019087           51 ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFR  127 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~  127 (346)
                      +...+|+|+|+|||.+++..++.+.|++|.+||+   +|+|++||+|+. ++..+|+||||+++...    .+++.|+|+
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f~   76 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK   76 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEEE
Confidence            3467899999999998654478999999999995   999999999986 45678999999997532    367999999


Q ss_pred             EEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087          128 LFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK  192 (346)
Q Consensus       128 ~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~  192 (346)
                      |.|+|+.++........  ..+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        77 ~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          77 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            99999987654332221  3567765 57899999999999987778999999999999999975

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.93  E-value=4.1e-25  Score=179.56  Aligned_cols=130  Identities=16%  Similarity=0.318  Sum_probs=109.7

Q ss_pred             CceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCC--CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 019087          210 SIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRH--GTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQV  287 (346)
Q Consensus       210 ~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~--~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~  287 (346)
                      .+.++|+|++||.+ ++.+.|+.|.+||++|+|.+||+|+..  +..++|||||.|.... ....|++.|+|+|+|+|++
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence            36899999999998 568999999999999999999999654  2347999999997643 2337999999999999998


Q ss_pred             CC-eeeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087          288 QA-RHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG  341 (346)
Q Consensus       288 ~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~  341 (346)
                      +. .+......+.|.....+|||++||+|++|+++.+|||+||+|+|||+|+|-.
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            53 3444555678877778999999999999987678999999999999998865

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=1.1e-25  Score=183.46  Aligned_cols=134  Identities=19%  Similarity=0.294  Sum_probs=107.1

Q ss_pred             cEEEEEEcCcccccc--cCCC--eEEcCce--EECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEEE
Q 019087           54 THYTVKINSFSLLLK--TSVE--KYETGDF--EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAVF  126 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~--~~~~--~~~S~~f--~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~~  126 (346)
                      |+|.|+|+|||++++  ..|+  .++|++|  .++||+|+|++||||.+ .+.++||||||.++.++.+ -..|++.+++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~   79 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV   79 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence            689999999999975  2466  8999999  89999999999999988 5678899999999987543 3579999999


Q ss_pred             EEEEEeCCCCcee-EEeccc-cceeeecCC----CccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087          127 RLFLLDQNKDNFL-ILQDAM-GAERRFHRL----KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV  188 (346)
Q Consensus       127 ~~~ll~~~~~~~~-~~~~~~-~~~~~F~~~----~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v  188 (346)
                      +|+|+||.+.... ...... .....|...    +..||+.+||++++|+.++.+||+||+|+|+|.|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999999865432 111000 013568654    4579999999999998444599999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=5.3e-25  Score=178.58  Aligned_cols=133  Identities=23%  Similarity=0.321  Sum_probs=104.3

Q ss_pred             cEEEEEEcCccccccc--CC--CeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEEE
Q 019087           54 THYTVKINSFSLLLKT--SV--EKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAVF  126 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~~--~~--~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~~  126 (346)
                      |+|.|+|+||++..+.  .+  ..++||+|+.+  ||+|+|++||||.+ .+.++|+||||.+++++.+ -..|++.+++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~   79 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV   79 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence            6899999999976652  23  47999999876  99999999999988 5678899999999986432 3479999999


Q ss_pred             EEEEEeCCCCceeEEeccccc--eeeec----CCCccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087          127 RLFLLDQNKDNFLILQDAMGA--ERRFH----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV  188 (346)
Q Consensus       127 ~~~ll~~~~~~~~~~~~~~~~--~~~F~----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v  188 (346)
                      +|+|+||.+......... ..  .+.|.    ..+..||+.+||++++|+.+..+||+||+++|+|+|
T Consensus        80 tfsLlDq~~~~~~~~~~~-~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          80 TFMLLDQNNREHVIDAFR-PDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEEECCCCCCCCcEeec-CCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999976443221111 01  35686    334579999999999998322399999999999987

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=7.7e-25  Score=184.82  Aligned_cols=138  Identities=17%  Similarity=0.233  Sum_probs=108.3

Q ss_pred             cCCCcEEEEEEcCcccccc--cCCC--eEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE
Q 019087           50 GASPTHYTVKINSFSLLLK--TSVE--KYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV  122 (346)
Q Consensus        50 ~~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~  122 (346)
                      ....|+|.|+|+|||.+++  ..|+  .++|++|++|  ||+|+|++||||.+ .+.++||||||.+++++.+ ...|++
T Consensus        35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~  113 (186)
T cd03777          35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  113 (186)
T ss_pred             cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCce
Confidence            3447999999999999865  2355  7999999999  99999999999987 5678899999999987542 457999


Q ss_pred             EEEEEEEEEeCCCCceeEEe--ccccceeeec-CC---CccccccceeeccccccCCCCceeCCEEEEEEEEEE
Q 019087          123 YAVFRLFLLDQNKDNFLILQ--DAMGAERRFH-RL---KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV  190 (346)
Q Consensus       123 ~~~~~~~ll~~~~~~~~~~~--~~~~~~~~F~-~~---~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v  190 (346)
                      .++++|.|+||.+.......  ........|. ..   +..||+.+||++++|+  +++||+||+|+|+|.|..
T Consensus       114 ~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         114 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             eEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEec
Confidence            99999999999753111110  0000224575 22   4579999999999999  688999999999998863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.92  E-value=3.1e-25  Score=182.34  Aligned_cols=133  Identities=25%  Similarity=0.313  Sum_probs=104.2

Q ss_pred             cEEEEEEcCcccccc-c-CCCe--EEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC-CCCCCEEEEEE
Q 019087           54 THYTVKINSFSLLLK-T-SVEK--YETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS-LQLGWEVYAVF  126 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~-~-~~~~--~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~~~~~~  126 (346)
                      |+|.|+|+|||.+++ . .|+.  ++|++|.+  |||+|+|++||+|.. ++..+||||||+++++.. ...+|++.|++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~   79 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI   79 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence            689999999998654 2 3554  88999985  799999999999987 566789999999988654 24579999999


Q ss_pred             EEEEEeCCCCceeEEe--ccccceeeecC-----CCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087          127 RLFLLDQNKDNFLILQ--DAMGAERRFHR-----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  189 (346)
Q Consensus       127 ~~~ll~~~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~  189 (346)
                      +|+|+||.++......  ........|..     ....|||.+||++++|+  +++||+||+|+|+|+|.
T Consensus        80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence            9999999864332110  00002345653     34679999999999998  56899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.92  E-value=7e-25  Score=181.27  Aligned_cols=133  Identities=22%  Similarity=0.336  Sum_probs=105.2

Q ss_pred             cEEEEEEcCccccccc----CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEEEEE
Q 019087           54 THYTVKINSFSLLLKT----SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVYAVF  126 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~~----~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~~~~  126 (346)
                      |+|.|+|+|||.+++.    .++.+.|++|.+|  ||+|+|++||||.. ++..+|||+||++++++.+. ..|++.+++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~   79 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI   79 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence            6899999999998752    2579999999999  99999999999987 56788999999999864432 489999999


Q ss_pred             EEEEEeCCCC--ce--eEEec--cccceeeecC--------CCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087          127 RLFLLDQNKD--NF--LILQD--AMGAERRFHR--------LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  189 (346)
Q Consensus       127 ~~~ll~~~~~--~~--~~~~~--~~~~~~~F~~--------~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~  189 (346)
                      +|+|+||.+.  ..  .....  .......|+.        .+.+||+.+||++++|+  +++||+||+|+|+|+|.
T Consensus        80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~  154 (154)
T cd03781          80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence            9999999864  11  11000  0001344542        34579999999999999  67999999999999873

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.92  E-value=2.2e-24  Score=174.49  Aligned_cols=124  Identities=21%  Similarity=0.445  Sum_probs=105.8

Q ss_pred             eEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEEEeCC
Q 019087          212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSAT----LTPGSKIYAEFTVRLLDQV  287 (346)
Q Consensus       212 ~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~----~~~~w~~~~~~~~~l~~~~  287 (346)
                      +|+|+|.+||.+ ++.+.|+.|.+||++|+|.+||+|+..  .+|+||||++.+...    .+.+|++.|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            589999999996 468999999999999999999999765  579999999876443    2457999999999999997


Q ss_pred             CCe-eeeecceeeecCCCCCCChhcccCccccCCC----CCCceeCCEEEEEEEEE
Q 019087          288 QAR-HIAGKANFWFSASNPESGWARYVSFAYFNNP----GNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       288 ~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~~yl~dD~l~i~~~V~  338 (346)
                      ++. +......+.|+....+|||.+||++++|+++    ++|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            643 4555667899877789999999999999854    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.92  E-value=7.4e-25  Score=180.79  Aligned_cols=132  Identities=27%  Similarity=0.418  Sum_probs=104.2

Q ss_pred             cEEEEEEcCcccccc----cCCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEEE
Q 019087           54 THYTVKINSFSLLLK----TSVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAVF  126 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~----~~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~~  126 (346)
                      |+|+|+|+|||.+++    ..++.++|++|.+|  ||+|+|++||+|.. ++.++||||||+++++..+ ..+|++.|+|
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~   79 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI   79 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence            689999999999865    13679999999999  99999999999986 4567899999999886543 4679999999


Q ss_pred             EEEEEeCCCC--ceeEEec--cccceeeec-----CCCccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087          127 RLFLLDQNKD--NFLILQD--AMGAERRFH-----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV  188 (346)
Q Consensus       127 ~~~ll~~~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v  188 (346)
                      +|.|+||.++  .......  .......|.     ....+|||.+||++++|+  +++||+||+|+|+|+|
T Consensus        80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v  148 (149)
T cd00270          80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV  148 (149)
T ss_pred             EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence            9999999874  1211100  000123454     135789999999999998  4589999999999997

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=1.7e-24  Score=174.92  Aligned_cols=126  Identities=23%  Similarity=0.410  Sum_probs=103.7

Q ss_pred             CCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEE
Q 019087           52 SPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLL  131 (346)
Q Consensus        52 ~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll  131 (346)
                      ..++++|+|+|||.+++ .++.++|++|.+|||+|+|++||+|+. ++.++||||||.+....    .|.+.++|+|+|+
T Consensus         3 ~~~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~ll   76 (132)
T cd03773           3 PYDSATFTLENFSTLRQ-SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEMV   76 (132)
T ss_pred             CCcccEEEECChhhhhc-CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEEE
Confidence            35789999999999854 367999999999999999999999987 55678999999987642    3678899999999


Q ss_pred             eCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeC--CEEEEEEEEE
Q 019087          132 DQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLE--DTCVFGAEVF  189 (346)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~d--D~l~i~~~v~  189 (346)
                      ||.++.......   ..+.|.. ..+|||.+||++++|+  ++|||+|  |+|+|+|.|+
T Consensus        77 nq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          77 HQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             cCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence            995433333322   4567865 4679999999999998  5799999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.90  E-value=3.6e-23  Score=168.57  Aligned_cols=128  Identities=26%  Similarity=0.463  Sum_probs=106.2

Q ss_pred             CceEEEEEccccccC---CceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 019087          210 SIKHVWRIENFSKLR---SECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRL  283 (346)
Q Consensus       210 ~~~~~~~I~nfs~l~---~~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l  283 (346)
                      ...|+|+|++||++.   ++.+.|+.|.+||+   +|+|.+||+|...+..+|+||||++....    .+++.|+|+|.|
T Consensus         4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l   79 (139)
T cd03774           4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI   79 (139)
T ss_pred             EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence            357999999999874   45799999999995   99999999998766678999999986532    368999999999


Q ss_pred             EeCCCCeee--eecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087          284 LDQVQARHI--AGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV  342 (346)
Q Consensus       284 ~~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~  342 (346)
                      +|+++....  .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus        80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~  139 (139)
T cd03774          80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  139 (139)
T ss_pred             EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence            999876532  2233466764 578999999999999876689999999999999999863

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.90  E-value=2.8e-23  Score=171.51  Aligned_cols=132  Identities=23%  Similarity=0.348  Sum_probs=101.2

Q ss_pred             CcEEEEEEcCcccccc-c-CCCeEEcCce-EECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC-CCCCCE-EEEEEE
Q 019087           53 PTHYTVKINSFSLLLK-T-SVEKYETGDF-EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS-LQLGWE-VYAVFR  127 (346)
Q Consensus        53 ~~~~~~~I~nfs~~~~-~-~~~~~~S~~f-~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~-~~~~~~  127 (346)
                      +.+|+|+|+|||.+++ . .++.++|++| .+|||+|+|++||+|++ + .++||||||+++++.. ...+|+ +.++++
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t   78 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT   78 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence            4689999999999963 3 4789999998 89999999999999987 5 6789999999998644 356799 589999


Q ss_pred             EEEEeCCCCc---eeEEe----cccc-c----eeeecC-----------------CCccccccceeeccccccCCCCcee
Q 019087          128 LFLLDQNKDN---FLILQ----DAMG-A----ERRFHR-----------------LKLEWGFDEFIPIKAFNDASNGFLL  178 (346)
Q Consensus       128 ~~ll~~~~~~---~~~~~----~~~~-~----~~~F~~-----------------~~~~~G~~~Fi~~~~L~~~~~~fl~  178 (346)
                      |+|+||.++.   .+...    +... .    ...|..                 .+.+|||.+||++++|+  ..+||+
T Consensus        79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk  156 (167)
T cd03771          79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK  156 (167)
T ss_pred             EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence            9999997421   11110    0000 0    001221                 23479999999999999  567999


Q ss_pred             CCEEEEEEEE
Q 019087          179 EDTCVFGAEV  188 (346)
Q Consensus       179 dD~l~i~~~v  188 (346)
                      ||+|.|++++
T Consensus       157 ~dtl~i~~~~  166 (167)
T cd03771         157 GDDLIILLDF  166 (167)
T ss_pred             CCEEEEEEEe
Confidence            9999999986

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.90  E-value=6e-23  Score=165.89  Aligned_cols=124  Identities=24%  Similarity=0.437  Sum_probs=104.9

Q ss_pred             CCCceEEEEEccccccC--CceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 019087          208 APSIKHVWRIENFSKLR--SECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLD  285 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~--~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~  285 (346)
                      |+...++|+|++||.+.  ++.+.|+.|.+||++|+|.+||+|+..+.++|||+||.+....    .|.+.++|+|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~----~~~~~~~~~l~lln   77 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL----GEASKYEYRVEMVH   77 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC----CCceeEEEEEEEEc
Confidence            67788999999999985  3578999999999999999999998776678999999987631    36788999999999


Q ss_pred             CC-CCeeeeecceeeecCCCCCCChhcccCccccCCCCCCceeC--CEEEEEEEEE
Q 019087          286 QV-QARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVK--DVCSVEAEVT  338 (346)
Q Consensus       286 ~~-~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~d--D~l~i~~~V~  338 (346)
                      |. ...+......+.|.. ..+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            94 344555566677865 46799999999999986  699999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=9e-23  Score=167.22  Aligned_cols=134  Identities=22%  Similarity=0.373  Sum_probs=106.2

Q ss_pred             CCCcEEEEEEcCccccccc--C--CCeEEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLKT--S--VEKYETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~  123 (346)
                      ...|+|+|+|.||+++.+.  .  ...++||+|+.  +||+|++++||||++ .+.+.|||||+++++++.+. .+|++.
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~   94 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN   94 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence            4579999999999998762  2  34799999975  489999999999988 57788999999999998775 789999


Q ss_pred             EEEEEEEEeCCCCceeEEe---ccccceeeec----CCCccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087          124 AVFRLFLLDQNKDNFLILQ---DAMGAERRFH----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV  188 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~~~~~---~~~~~~~~F~----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v  188 (346)
                      .+++|+|+||++.......   +.  ....|.    ..+.+||+..|+++++|.++ ++||+||+|.|+|.|
T Consensus        95 ~~itl~llDQ~~r~hi~~~~~pd~--~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          95 QKVTLMLLDQNNREHVIDAFRPDV--TSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             eEEEEEEECCCCCCcceeEEEcCc--chHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            9999999999754322210   00  111342    23457999999999999843 699999999999977

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.88  E-value=3.6e-22  Score=162.83  Aligned_cols=127  Identities=24%  Similarity=0.348  Sum_probs=104.5

Q ss_pred             ceEEEEEccccccC-----Cc--eeecCcE--EeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 019087          211 IKHVWRIENFSKLR-----SE--CCDSQVF--NSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAEFT  280 (346)
Q Consensus       211 ~~~~~~I~nfs~l~-----~~--~~~S~~f--~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~  280 (346)
                      +.++|+|.+|++++     ++  .+.|+.|  .++|++|+|.+||+|.+.+.++|+||||+++.++.+. ..|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            46899999999986     23  6899999  8999999999999999888889999999998865443 5799999999


Q ss_pred             EEEEeCCCCe-ee--ee---cceeeecCC----CCCCChhcccCccccCCCCCCceeCCEEEEEEEE
Q 019087          281 VRLLDQVQAR-HI--AG---KANFWFSAS----NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEV  337 (346)
Q Consensus       281 ~~l~~~~~~~-~~--~~---~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V  337 (346)
                      |.|++|.+.. ++  ..   ...+.|+..    +..||+++||++++|+..+++||+||+|+|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999998643 21  11   113567654    5579999999999998644689999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.88  E-value=3.9e-22  Score=161.81  Aligned_cols=128  Identities=20%  Similarity=0.304  Sum_probs=102.3

Q ss_pred             ceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 019087          211 IKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYAEFT  280 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~  280 (346)
                      +.++|+|++|++..+       ..++|+.|...  |++|+|.+||+|.+.+.++|+|+||++..++.+ ...|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            468999999997651       25899988754  999999999999988888899999999875433 24699999999


Q ss_pred             EEEEeCCCCeeee--ecc---eeeec----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          281 VRLLDQVQARHIA--GKA---NFWFS----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       281 ~~l~~~~~~~~~~--~~~---~~~F~----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      |.|++|.+..+..  ...   .+.|+    ..+.+||+++||++++|+...++||+||+++|+|+|.
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            9999998654321  111   25686    3456799999999999986335899999999999983

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.88  E-value=3.5e-22  Score=164.78  Aligned_cols=126  Identities=23%  Similarity=0.388  Sum_probs=102.0

Q ss_pred             ceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 019087          211 IKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYAEFT  280 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~  280 (346)
                      +.|+|+|++|+.+++       +.+.|+.|.+|  |++|+|.+||+|...+.++||||||++.+...+ ...|++.++++
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            468999999999752       47899999999  999999999999876667899999999876443 35799999999


Q ss_pred             EEEEeCCCC---eeeeec-----ceeeec-----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          281 VRLLDQVQA---RHIAGK-----ANFWFS-----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       281 ~~l~~~~~~---~~~~~~-----~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      |.|+||.++   .+....     ....|.     ....+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   232211     123454     1356899999999999986  5899999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.87  E-value=1.6e-21  Score=164.63  Aligned_cols=129  Identities=22%  Similarity=0.347  Sum_probs=105.2

Q ss_pred             CCceEEEEEccccccCC-----c--eeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087          209 PSIKHVWRIENFSKLRS-----E--CCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE  278 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~~-----~--~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~  278 (346)
                      ..+.|+|+|.+|++.+.     +  .+.|+.|.++  |++|+|.+||+|++.++++|+|+||++++++.++ ..|++.++
T Consensus        37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~  116 (186)
T cd03777          37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  116 (186)
T ss_pred             cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEE
Confidence            36899999999998752     3  6899999999  9999999999999888889999999998865432 57999999


Q ss_pred             EEEEEEeCCCC-eeeee-----cceeeec-CC---CCCCChhcccCccccCCCCCCceeCCEEEEEEEEEE
Q 019087          279 FTVRLLDQVQA-RHIAG-----KANFWFS-AS---NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTV  339 (346)
Q Consensus       279 ~~~~l~~~~~~-~~~~~-----~~~~~F~-~~---~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i  339 (346)
                      ++|.|++|.+. .++..     .....|. ..   +.+||+++||++++|+.  ++||+||+|+|+|.|..
T Consensus       117 ~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         117 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             EEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence            99999999752 11111     1225576 22   45799999999999986  68999999999998863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.87  E-value=5.2e-22  Score=163.18  Aligned_cols=126  Identities=21%  Similarity=0.268  Sum_probs=100.5

Q ss_pred             ceEEEEEccccccCC-----c--eeecCcEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEEEEE
Q 019087          211 IKHVWRIENFSKLRS-----E--CCDSQVFNS--GDQKWKIQLYPKGRRHGTGTHLAMYLALADSAT-LTPGSKIYAEFT  280 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~-----~--~~~S~~f~v--~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~~~~~  280 (346)
                      +.|+|+|.+|+.+.+     +  .+.|+.|.+  +|++|+|.+||+|...+..+|||+||++..... ...+|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            468999999997642     2  378999985  799999999999988777789999999987543 235699999999


Q ss_pred             EEEEeCCCCe-eeee-----cceeeecC-----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          281 VRLLDQVQAR-HIAG-----KANFWFSA-----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       281 ~~l~~~~~~~-~~~~-----~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      |.|+||.++. ++..     .....|..     .+.+|||.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998642 2211     12345653     346799999999999987  5899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.86  E-value=7.5e-21  Score=151.45  Aligned_cols=125  Identities=33%  Similarity=0.525  Sum_probs=101.2

Q ss_pred             cEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeC
Q 019087           54 THYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQ  133 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~  133 (346)
                      ++|+|+|.+|+...   ++.++|+.|.++|+.|+|.+||+|.. . ..+||||||.|.........|.+.++++|.|+++
T Consensus         1 ~~~~~~i~~~~~~~---~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~   75 (126)
T cd00121           1 GKHTWKIVNFSELE---GESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQ   75 (126)
T ss_pred             CEEEEEECCCCCCC---CcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECC
Confidence            47999999999832   68999999999999999999999975 2 5789999999988754445799999999999999


Q ss_pred             CCCceeEEeccccceeeec-CCCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087          134 NKDNFLILQDAMGAERRFH-RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  189 (346)
Q Consensus       134 ~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~  189 (346)
                      ++.+.....    ....|. ....+|||.+||++++|++  ..++.||+|+|+|+|.
T Consensus        76 ~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          76 NGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            844333221    234443 4568899999999999993  3349999999999983

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.86  E-value=2.5e-21  Score=160.11  Aligned_cols=126  Identities=21%  Similarity=0.304  Sum_probs=102.1

Q ss_pred             ceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 019087          211 IKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAEFT  280 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~  280 (346)
                      +.|.|+|.+|+.+++       ..+.|+.|.+|  |++|+|.+||+|...+.++|+|+||++..++.+. ..|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            468999999998752       36899999999  9999999999998888888999999998854443 4799999999


Q ss_pred             EEEEeCCCC--e---eeeec-----ceeeecC--------CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          281 VRLLDQVQA--R---HIAGK-----ANFWFSA--------SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       281 ~~l~~~~~~--~---~~~~~-----~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      |+|++|.+.  .   ++...     ....|+.        .+.+||+.+||++++|+.  ++||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999864  1   22111     1234542        345799999999999986  6899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.86  E-value=4e-21  Score=157.49  Aligned_cols=129  Identities=22%  Similarity=0.318  Sum_probs=106.7

Q ss_pred             CCceEEEEEccccccCC-------ceeecCcEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087          209 PSIKHVWRIENFSKLRS-------ECCDSQVFNS--GDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE  278 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~~-------~~~~S~~f~v--~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~  278 (346)
                      ..+.++|+|+||+++..       ..++|+.|..  +|++|+|.+||+|++.+++.|||+||++.+++.++ ..|++..+
T Consensus        17 ~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~~   96 (164)
T cd03778          17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK   96 (164)
T ss_pred             cCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceeeE
Confidence            46899999999998762       2578887753  58999999999999988889999999999988777 78999999


Q ss_pred             EEEEEEeCCCCeeeeecce-----eeec----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          279 FTVRLLDQVQARHIAGKAN-----FWFS----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       279 ~~~~l~~~~~~~~~~~~~~-----~~F~----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      ++|+|+||++..|+.....     ..|.    ..+.+||+++|+++++|+.. ++||+||+|.|+|.|.
T Consensus        97 itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~Vd  164 (164)
T cd03778          97 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIVD  164 (164)
T ss_pred             EEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEEC
Confidence            9999999987555543322     1342    23567999999999999864 5999999999999873

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.86  E-value=4.6e-21  Score=158.41  Aligned_cols=125  Identities=21%  Similarity=0.353  Sum_probs=98.2

Q ss_pred             ceEEEEEccccccC-C----ceeecCcE-EeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCe-EEEEEEEE
Q 019087          211 IKHVWRIENFSKLR-S----ECCDSQVF-NSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSK-IYAEFTVR  282 (346)
Q Consensus       211 ~~~~~~I~nfs~l~-~----~~~~S~~f-~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~-~~~~~~~~  282 (346)
                      +.|+|+|.+||+++ +    ..+.|+.| .++|++|+|.+||+|+.. .++||||||++.+++.+ ..+|+ +.++++|+
T Consensus         2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~   80 (167)
T cd03771           2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMT   80 (167)
T ss_pred             CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence            57999999999985 2    36899998 999999999999999987 78899999999875443 36799 58999999


Q ss_pred             EEeCCCC----eeeee----cc--------eeeecC-----------------CCCCCChhcccCccccCCCCCCceeCC
Q 019087          283 LLDQVQA----RHIAG----KA--------NFWFSA-----------------SNPESGWARYVSFAYFNNPGNGCLVKD  329 (346)
Q Consensus       283 l~~~~~~----~~~~~----~~--------~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~~yl~dD  329 (346)
                      |++|...    .++..    ..        ...|++                 ++.+|||++||++++|+.  ++||+||
T Consensus        81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~d  158 (167)
T cd03771          81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGD  158 (167)
T ss_pred             EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcCC
Confidence            9999741    12111    00        001221                 335899999999999997  5799999


Q ss_pred             EEEEEEEEE
Q 019087          330 VCSVEAEVT  338 (346)
Q Consensus       330 ~l~i~~~V~  338 (346)
                      +|.|+++++
T Consensus       159 tl~i~~~~~  167 (167)
T cd03771         159 DLIILLDFE  167 (167)
T ss_pred             EEEEEEEeC
Confidence            999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.85  E-value=2.8e-20  Score=148.16  Aligned_cols=124  Identities=31%  Similarity=0.573  Sum_probs=103.7

Q ss_pred             eEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCee
Q 019087          212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARH  291 (346)
Q Consensus       212 ~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~  291 (346)
                      .|+|+|.+|+...++.+.|+.|.++|+.|+|.+||+|... ..++||+||+|.........|++.++++|+|+++++.++
T Consensus         2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (126)
T cd00121           2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS   80 (126)
T ss_pred             EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence            5899999999955678999999999999999999999765 457999999998765444579999999999999985555


Q ss_pred             eeecceeeec-CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          292 IAGKANFWFS-ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       292 ~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      ......+.|. ....+|||.+||++++|+++  .+++||+|+|+|+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~  126 (126)
T cd00121          81 LSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK  126 (126)
T ss_pred             ceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence            5555555553 45689999999999999973  349999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.83  E-value=3.7e-20  Score=146.45  Aligned_cols=118  Identities=33%  Similarity=0.582  Sum_probs=95.7

Q ss_pred             EcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEeCCCCce
Q 019087           60 INSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVYAVFRLFLLDQNKDNF  138 (346)
Q Consensus        60 I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~~~~~~~ll~~~~~~~  138 (346)
                      |+|||++.+ .+..+.|+.|.++|++|+|.+||+|+     .++||+||+|.....+. ..|++.+++++.|+++.++..
T Consensus         1 i~nfs~l~~-~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~   74 (119)
T PF00917_consen    1 IKNFSKLKE-GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI   74 (119)
T ss_dssp             ETTGGGHHT-SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE
T ss_pred             CcccceEeC-CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc
Confidence            789999973 12344458889999999999999975     57999999999986543 589999999999999998873


Q ss_pred             eEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEE
Q 019087          139 LILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV  190 (346)
Q Consensus       139 ~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v  190 (346)
                      ....    ..+.|... .+|||.+||++++|.++.  |+.||+|+|+|+|+|
T Consensus        75 ~~~~----~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   75 SKRI----KSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEE----ECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             eeee----eeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence            3321    23788774 889999999999999433  899999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.80  E-value=2e-19  Score=142.26  Aligned_cols=116  Identities=34%  Similarity=0.571  Sum_probs=94.6

Q ss_pred             EccccccCC-ce-eecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCeeee
Q 019087          217 IENFSKLRS-EC-CDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAEFTVRLLDQVQARHIA  293 (346)
Q Consensus       217 I~nfs~l~~-~~-~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~~~  293 (346)
                      |+|||++.. +. ..|+.+.++|++|+|.+||+|+    +++|++||+|....... ..|++.++++++|+++.+.....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            689999973 33 3447888999999999999987    46999999999875543 57999999999999999876222


Q ss_pred             ecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEE
Q 019087          294 GKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTV  339 (346)
Q Consensus       294 ~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i  339 (346)
                      ....+.|... .+|||.+||++++|+++  .|++||+|+|+|+|+|
T Consensus        77 ~~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            2125888754 78999999999999985  3899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=3.8e-19  Score=145.12  Aligned_cols=133  Identities=20%  Similarity=0.384  Sum_probs=102.1

Q ss_pred             cEEEEEEcCccccccc--CCCeEEcCceEEC-CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE-EEEEEE
Q 019087           54 THYTVKINSFSLLLKT--SVEKYETGDFEAG-GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV-YAVFRL  128 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~~--~~~~~~S~~f~~g-G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~-~~~~~~  128 (346)
                      ..++|+|.||+++.+.  .+..++||+|+.. ||+.+|++||+|++..+.+.|||||+++++++.+ -++|++ .-+++|
T Consensus         2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl   81 (167)
T cd03783           2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII   81 (167)
T ss_pred             CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence            5689999999998763  4678999999874 9999999999998634668899999999998765 568995 569999


Q ss_pred             EEEeCCCC---ceeE----Eeccccc------eeeecC--------------CCccccccceeeccccccCCCCceeCCE
Q 019087          129 FLLDQNKD---NFLI----LQDAMGA------ERRFHR--------------LKLEWGFDEFIPIKAFNDASNGFLLEDT  181 (346)
Q Consensus       129 ~ll~~~~~---~~~~----~~~~~~~------~~~F~~--------------~~~~~G~~~Fi~~~~L~~~~~~fl~dD~  181 (346)
                      .|+||++.   ..+.    ..+....      ...|..              .+.++||..||++++|+  ..+||+||+
T Consensus        82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDt  159 (167)
T cd03783          82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDD  159 (167)
T ss_pred             EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCe
Confidence            99999752   1111    0010000      011432              24589999999999999  689999999


Q ss_pred             EEEEEEE
Q 019087          182 CVFGAEV  188 (346)
Q Consensus       182 l~i~~~v  188 (346)
                      |.|.+++
T Consensus       160 lfI~~~~  166 (167)
T cd03783         160 LIIFVDF  166 (167)
T ss_pred             EEEEEec
Confidence            9999876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.78  E-value=1.8e-18  Score=140.27  Aligned_cols=132  Identities=22%  Similarity=0.353  Sum_probs=101.9

Q ss_pred             CcEEEEEEcCccccccc--CCCeEEcCceEE-CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE-EEEE
Q 019087           53 PTHYTVKINSFSLLLKT--SVEKYETGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY-AVFR  127 (346)
Q Consensus        53 ~~~~~~~I~nfs~~~~~--~~~~~~S~~f~~-gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~-~~~~  127 (346)
                      +..|+|+|.||+++.+.  .+..++||+|+. .||+.++++||||++ .+ ++|||||+++++++.+ -++|++. -+++
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit   78 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT   78 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence            35799999999998763  467899999964 699999999999987 34 6899999999998765 5689999 8999


Q ss_pred             EEEEeCCC---CceeEEe----c--cccc-eeee--cCC-----------------CccccccceeeccccccCCCCcee
Q 019087          128 LFLLDQNK---DNFLILQ----D--AMGA-ERRF--HRL-----------------KLEWGFDEFIPIKAFNDASNGFLL  178 (346)
Q Consensus       128 ~~ll~~~~---~~~~~~~----~--~~~~-~~~F--~~~-----------------~~~~G~~~Fi~~~~L~~~~~~fl~  178 (346)
                      |.|+||++   ...+...    +  .... ...|  ...                 +.++|++.||++++|+  .+.||+
T Consensus        79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik  156 (167)
T cd03782          79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK  156 (167)
T ss_pred             EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence            99999975   2222111    0  0000 0124  221                 4689999999999999  689999


Q ss_pred             CCEEEEEEEE
Q 019087          179 EDTCVFGAEV  188 (346)
Q Consensus       179 dD~l~i~~~v  188 (346)
                      ||.+.|-+++
T Consensus       157 dD~ifi~~~~  166 (167)
T cd03782         157 GDDVIFLLTM  166 (167)
T ss_pred             CCeEEEEEec
Confidence            9999998765

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.72  E-value=6.7e-17  Score=122.36  Aligned_cols=94  Identities=26%  Similarity=0.435  Sum_probs=79.4

Q ss_pred             EEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeCCC
Q 019087           56 YTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNK  135 (346)
Q Consensus        56 ~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~~~  135 (346)
                      ++|+|+||+.+..  ++.++|++|.++|++|+|.+||+       .+|||+||.|.+....+..|++.|+++++|+|+++
T Consensus         2 ~~~~~~~~~~~~~--~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~   72 (95)
T smart00061        2 LSHTFKNVSRLEE--GESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNG   72 (95)
T ss_pred             ceeEEEchhhccc--CceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCC
Confidence            5799999999854  78999999999999999999998       37999999998765444579999999999999997


Q ss_pred             CceeEEeccccceeeecCCCcccccccee
Q 019087          136 DNFLILQDAMGAERRFHRLKLEWGFDEFI  164 (346)
Q Consensus       136 ~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi  164 (346)
                      +....  .   ..+.|.. ..+|||.+||
T Consensus        73 ~~~~~--~---~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       73 KSLSK--K---DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CEEee--e---eeEEEcC-CCccceeeEC
Confidence            65422  2   5788986 6889999886

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.72  E-value=3.2e-17  Score=133.82  Aligned_cols=126  Identities=18%  Similarity=0.326  Sum_probs=98.7

Q ss_pred             ceEEEEEccccccCC-----ceeecCcEEe-CCceEEEEEEeCCCCC-CCCCeEEEEEEecCCCCCC-CCCeE-EEEEEE
Q 019087          211 IKHVWRIENFSKLRS-----ECCDSQVFNS-GDQKWKIQLYPKGRRH-GTGTHLAMYLALADSATLT-PGSKI-YAEFTV  281 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~-----~~~~S~~f~v-~g~~w~l~~yp~g~~~-~~~~~ls~~L~~~~~~~~~-~~w~~-~~~~~~  281 (346)
                      ..++|+|+||+++.+     ..++|+.|.. .|+++.|.+||+|++. +++.|+|||+++++++.+. ..|++ .-+++|
T Consensus         2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl   81 (167)
T cd03783           2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII   81 (167)
T ss_pred             CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence            468999999998763     3689998876 5999999999999874 6678999999999987665 77995 569999


Q ss_pred             EEEeCCCC----eeee----ecc---------eeeecC--------------CCCCCChhcccCccccCCCCCCceeCCE
Q 019087          282 RLLDQVQA----RHIA----GKA---------NFWFSA--------------SNPESGWARYVSFAYFNNPGNGCLVKDV  330 (346)
Q Consensus       282 ~l~~~~~~----~~~~----~~~---------~~~F~~--------------~~~~~G~~~fi~~~~L~~~~~~yl~dD~  330 (346)
                      .|+||+..    .|+.    ...         ...|++              ++.++||++||+++.|+.  ++||+||+
T Consensus        82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt  159 (167)
T cd03783          82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD  159 (167)
T ss_pred             EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence            99999741    1221    000         111432              245899999999999997  78999999


Q ss_pred             EEEEEEEE
Q 019087          331 CSVEAEVT  338 (346)
Q Consensus       331 l~i~~~V~  338 (346)
                      |.|.++++
T Consensus       160 lfI~~~~~  167 (167)
T cd03783         160 LIIFVDFE  167 (167)
T ss_pred             EEEEEecC
Confidence            99998863

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.70  E-value=9.6e-17  Score=130.27  Aligned_cols=124  Identities=20%  Similarity=0.259  Sum_probs=98.4

Q ss_pred             ceEEEEEccccccCC-----ceeecCcE-EeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEE-EEEEEE
Q 019087          211 IKHVWRIENFSKLRS-----ECCDSQVF-NSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIY-AEFTVR  282 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~-----~~~~S~~f-~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~-~~~~~~  282 (346)
                      +.++|+|+||+++.+     ..++|+.| ...|++.+|.+|++|++.+ +.|||||+++++++.+. ..|++. -+++|.
T Consensus         2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~   80 (167)
T cd03782           2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM   80 (167)
T ss_pred             CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence            468999999999773     36888866 4589999999999999876 67999999999977665 779999 999999


Q ss_pred             EEeCCCC----eeeee--cc------e--eee--cCC-----------------CCCCChhcccCccccCCCCCCceeCC
Q 019087          283 LLDQVQA----RHIAG--KA------N--FWF--SAS-----------------NPESGWARYVSFAYFNNPGNGCLVKD  329 (346)
Q Consensus       283 l~~~~~~----~~~~~--~~------~--~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~~yl~dD  329 (346)
                      |+||+..    .|+..  +.      .  ..|  ++.                 +.++||+.||++++|+.  +.||+||
T Consensus        81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD  158 (167)
T cd03782          81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGD  158 (167)
T ss_pred             EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCC
Confidence            9999741    23222  11      1  134  221                 57899999999999997  7899999


Q ss_pred             EEEEEEEE
Q 019087          330 VCSVEAEV  337 (346)
Q Consensus       330 ~l~i~~~V  337 (346)
                      .|.|-+++
T Consensus       159 ~ifi~~~~  166 (167)
T cd03782         159 DVIFLLTM  166 (167)
T ss_pred             eEEEEEec
Confidence            99998876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.64  E-value=3.1e-15  Score=113.17  Aligned_cols=93  Identities=23%  Similarity=0.346  Sum_probs=78.8

Q ss_pred             EEEEEccccccC-CceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCee
Q 019087          213 HVWRIENFSKLR-SECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARH  291 (346)
Q Consensus       213 ~~~~I~nfs~l~-~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~  291 (346)
                      ++|.|++|+.+. ++.+.|+.|.++|++|+|.+||++      +|||+||.|.+....+..|++.|+++|+|+++++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~------~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC------CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 567999999999999999999983      5999999998765544579999999999999998655


Q ss_pred             eeecceeeecCCCCCCChhccc
Q 019087          292 IAGKANFWFSASNPESGWARYV  313 (346)
Q Consensus       292 ~~~~~~~~F~~~~~~~G~~~fi  313 (346)
                       .....+.|.. ..+|||.+||
T Consensus        76 -~~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 -SKKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             -eeeeeEEEcC-CCccceeeEC
Confidence             4456788986 6789999886

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.4e-15  Score=143.85  Aligned_cols=147  Identities=27%  Similarity=0.481  Sum_probs=117.6

Q ss_pred             CCcccccccccccCCCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC--
Q 019087           38 GDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS--  115 (346)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~--  115 (346)
                      ++++......+.+...-.|+|+|++||.+.    ++.+||+|.+||+.|+|.++|+|+.    ..-+||||.....+.  
T Consensus        23 ~~~L~~~~pd~Ee~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~twki~lfPqG~n----q~~~sVyLe~~pqe~e~   94 (1089)
T COG5077          23 GSILPQFDPDVEELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTWKIILFPQGNN----QCNVSVYLEYEPQELEE   94 (1089)
T ss_pred             HHhhhhcCccHHHHhhcccceecCChhhhh----hhccCCcccccCeeEEEEEecccCC----ccccEEEEEeccchhhh
Confidence            334444455566677889999999999995    4789999999999999999999976    223999999887532  


Q ss_pred             CC-CCCEEEEEEEEEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCC---ceeCCEEEEEEEEEEe
Q 019087          116 LQ-LGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVC  191 (346)
Q Consensus       116 ~~-~~w~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~---fl~dD~l~i~~~v~v~  191 (346)
                      .+ ..|.|+|+|.|.|-+...+.......   ..|+|.....+|||.+||.+..|.-|+.|   |+.+|.+.|++.|+|+
T Consensus        95 ~~gk~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvl  171 (1089)
T COG5077          95 TGGKYYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVL  171 (1089)
T ss_pred             hcCcchhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEE
Confidence            12 34999999999999887754332222   57899998999999999999999876544   8999999999999999


Q ss_pred             eecc
Q 019087          192 KERS  195 (346)
Q Consensus       192 ~~~~  195 (346)
                      +++.
T Consensus       172 kdPT  175 (1089)
T COG5077         172 KDPT  175 (1089)
T ss_pred             eCCc
Confidence            9864

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=9.9e-13  Score=127.17  Aligned_cols=129  Identities=19%  Similarity=0.386  Sum_probs=107.3

Q ss_pred             CceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCC--CC-CCCeEEEEEEEEEEeC
Q 019087          210 SIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSAT--LT-PGSKIYAEFTVRLLDQ  286 (346)
Q Consensus       210 ~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~--~~-~~w~~~~~~~~~l~~~  286 (346)
                      ...++|+|++++.+.. ...|+.|.+||+.|+|.++|+|+...   .+|+||+......  .. ..|.|+++|.|.+-+.
T Consensus        38 ~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p  113 (1089)
T COG5077          38 EMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISNP  113 (1089)
T ss_pred             hcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCCC
Confidence            4678999999999974 78899999999999999999997642   3899999876321  11 3599999999999888


Q ss_pred             CCCe-eeeecceeeecCCCCCCChhcccCccccCCCCC---CceeCCEEEEEEEEEEEee
Q 019087          287 VQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGN---GCLVKDVCSVEAEVTVHGV  342 (346)
Q Consensus       287 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~---~yl~dD~l~i~~~V~i~~~  342 (346)
                      ..+. ....+..|+|.....+||+.+|+.+..|..|..   .|+.+|++.|.|.|.|++.
T Consensus       114 ~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         114 KYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            7642 345667899998899999999999999987544   3788999999999999987

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.93  E-value=6.4e-10  Score=102.22  Aligned_cols=262  Identities=23%  Similarity=0.327  Sum_probs=172.3

Q ss_pred             EEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeCCCCc
Q 019087           58 VKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDN  137 (346)
Q Consensus        58 ~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~~~~~  137 (346)
                      |.+.+++...    ..++|..|..+|..|++.+||.|+       +++.|+.+....    +|.+.+.++|.+.|+....
T Consensus         8 ~~~~~~~~~~----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~   72 (297)
T KOG1987|consen    8 WVISNFSSVG----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEK   72 (297)
T ss_pred             eeeccCcchh----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCcc
Confidence            8898988774    688999999999999999999973       688888877643    6999999999999998875


Q ss_pred             e-eEEeccccceeeecC--CCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccCCccceecc--------cc
Q 019087          138 F-LILQDAMGAERRFHR--LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSM--------IK  206 (346)
Q Consensus       138 ~-~~~~~~~~~~~~F~~--~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~~~~~~~~~--------i~  206 (346)
                      . .....   ....|..  -...||+...++...+.++..||+.++.+.+-+.+.|.+....  .+....        ..
T Consensus        73 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~--~d~~~~~~~~~~~~d~  147 (297)
T KOG1987|consen   73 YLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGK--SDVFKESSKLITLLEE  147 (297)
T ss_pred             eeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecc--cccchhcccccccccc
Confidence            4 33311   2333332  2578999999999999988899999988888777777666532  111111        22


Q ss_pred             CCCC----ceEEEEEccccccCC----ceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC--CCCCeEE
Q 019087          207 DAPS----IKHVWRIENFSKLRS----ECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATL--TPGSKIY  276 (346)
Q Consensus       207 ~~~~----~~~~~~I~nfs~l~~----~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~--~~~w~~~  276 (346)
                      .+..    ..|+|.+.+++....    ....+..|..++..|++.++|.+.+..+...++.+|......+.  ...-.++
T Consensus       148 ~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  227 (297)
T KOG1987|consen  148 KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTY  227 (297)
T ss_pred             chhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHH
Confidence            2334    789999999988762    24556788999999999999999766555677888876552211  1112233


Q ss_pred             EEEEEEEEeCCCCe--ee-eec-ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEE
Q 019087          277 AEFTVRLLDQVQAR--HI-AGK-ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVH  340 (346)
Q Consensus       277 ~~~~~~l~~~~~~~--~~-~~~-~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~  340 (346)
                      +......+|+....  +. .+. ...........+ ..++.++.++.....+++++|++.+++...++
T Consensus       228 ~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  294 (297)
T KOG1987|consen  228 VIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL  294 (297)
T ss_pred             HHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence            33443445554321  11 011 001111111111 44566666555544567778888777766554

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.30  E-value=9.8e-06  Score=74.44  Aligned_cols=119  Identities=27%  Similarity=0.458  Sum_probs=94.5

Q ss_pred             EEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCee-e
Q 019087          214 VWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARH-I  292 (346)
Q Consensus       214 ~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~-~  292 (346)
                      .|.+.+++... ..+++..+..++..|++.+||.|+      +++.|+.+....    +|.+.+.+.|.+.|+...+. .
T Consensus         7 ~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~   75 (297)
T KOG1987|consen    7 TWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLS   75 (297)
T ss_pred             ceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCcceee
Confidence            37778887765 567888899999999999999985      789999876642    69999999999999988643 3


Q ss_pred             ee-cceeeecCC--CCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087          293 AG-KANFWFSAS--NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS  343 (346)
Q Consensus       293 ~~-~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t  343 (346)
                      .. .....|...  ...||+..+++...+.+.+.||++++.+++-+.+.|.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~  129 (297)
T KOG1987|consen   76 TVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM  129 (297)
T ss_pred             eeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee
Confidence            33 344444433  4689999999999999888899999888888887777654

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=3.1e-06  Score=90.03  Aligned_cols=131  Identities=20%  Similarity=0.230  Sum_probs=106.0

Q ss_pred             cEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeC
Q 019087           54 THYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQ  133 (346)
Q Consensus        54 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~  133 (346)
                      ...+|...+...+.    ....|+.|..|+.+|++.+.|+++.    ...+++|+.+...... ..|++.+++.+.+.|.
T Consensus        27 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~   97 (1093)
T KOG1863|consen   27 QSTTIDGIDDKSLL----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNT   97 (1093)
T ss_pred             ccccccCcCcchhh----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccC
Confidence            34446665555443    3677899999999999999999874    5779999999987665 5599999999999994


Q ss_pred             CCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccC
Q 019087          134 NKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERST  196 (346)
Q Consensus       134 ~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~  196 (346)
                      .+........   ..|.|.....+||+..|+.++++.+|..+|+.+|++.++++|.+...+..
T Consensus        98 ~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen   98 IDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             CCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            3333333222   68899998899999999999999999999999999999999999887754

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4e-06  Score=89.24  Aligned_cols=129  Identities=18%  Similarity=0.203  Sum_probs=105.0

Q ss_pred             eEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCC-e
Q 019087          212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQA-R  290 (346)
Q Consensus       212 ~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~-~  290 (346)
                      ..+|...+...+.. ...++.|..++.+|++.+.|+++.   ...+++|+.+...... ..|.+.+++.+.++|..+. .
T Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~  102 (1093)
T KOG1863|consen   28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLP  102 (1093)
T ss_pred             cccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCch
Confidence            33444444444443 667888999999999999999883   2579999999886655 4599999999999993332 2


Q ss_pred             eeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeeecC
Q 019087          291 HIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNA  345 (346)
Q Consensus       291 ~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t~~  345 (346)
                      .......|.|.....+||+.+|+.++++.++..+|+.+|++.++++|.+...++.
T Consensus       103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            5566788999998999999999999999999999999999999999999887764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.26  E-value=0.00019  Score=68.24  Aligned_cols=81  Identities=22%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             CCcEEEEEEcCcccccc----cCCCeEEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEE
Q 019087           52 SPTHYTVKINSFSLLLK----TSVEKYETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYA  124 (346)
Q Consensus        52 ~~~~~~~~I~nfs~~~~----~~~~~~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~  124 (346)
                      -.|+..|+|.+|+..+.    ..+..++|++|+.  .||+.+.++|-+|++ .+.+.++|+|+.++.++.+ ...|++.-
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~~  356 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFRQ  356 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCCC
Confidence            37999999999965544    2366899999964  699999999999988 6778899999999998664 45799999


Q ss_pred             EEEEEEEeC
Q 019087          125 VFRLFLLDQ  133 (346)
Q Consensus       125 ~~~~~ll~~  133 (346)
                      ++++.|++|
T Consensus       357 ~v~~~l~dq  365 (391)
T KOG0297|consen  357 KVTLMLLDQ  365 (391)
T ss_pred             ceEEEEecc
Confidence            999999999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=95.78  E-value=0.0082  Score=57.18  Aligned_cols=78  Identities=23%  Similarity=0.348  Sum_probs=66.2

Q ss_pred             CCceEEEEEccccccC-------CceeecCcEE--eCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087          209 PSIKHVWRIENFSKLR-------SECCDSQVFN--SGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE  278 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~-------~~~~~S~~f~--v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~  278 (346)
                      ..+...|+|.+++...       ...+.|+.|.  -.|++....+|-+|++.+++.++|+|+.+..+..++ ..|++.-.
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~  357 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK  357 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence            3688999999996554       2357777665  479999999999999999999999999999876665 67999999


Q ss_pred             EEEEEEeC
Q 019087          279 FTVRLLDQ  286 (346)
Q Consensus       279 ~~~~l~~~  286 (346)
                      +++.|++|
T Consensus       358 v~~~l~dq  365 (391)
T KOG0297|consen  358 VTLMLLDQ  365 (391)
T ss_pred             eEEEEecc
Confidence            99999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	2e-29
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	1e-25
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-24
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-24
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-19
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-10
1d00_A	168	Tumor necrosis factor receptor associated protein	2e-16
1d00_A	168	Tumor necrosis factor receptor associated protein	2e-14
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	3e-16
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-14
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	9e-16
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	1e-15
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	1e-15
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	8e-13
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	4e-13
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	3e-12
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	5e-13
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  109 bits (274), Expect = 2e-29
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 10/149 (6%)

Query: 49  SGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYL 108
           S  S   +   +  FS L     E   +         WK+++ P     +  ++ +  +L
Sbjct: 14  SWRSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL 69

Query: 109 AMANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKA 168
              N  S    W  +A   L +++   D     +        F   + +WGF  F+    
Sbjct: 70  -QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSE 125

Query: 169 FNDASNGFLLEDTCVFGAEVFVCKERSTG 197
             D   GF+ +D   F   V        G
Sbjct: 126 VTDPEKGFIDDDKVTFEVFVQADAP--HG 152

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =   99 bits (249), Expect = 1e-25
 Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGT-HLAMYLALADSATLT 270
              + +E FS+L SE   S      +  WKI + P+          +  +L   ++ + +
Sbjct: 20  TFQFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 77

Query: 271 PGSKIYAEFTVRLLDQV-QARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKD 329
                +A+  +++++     +  + + +  F     + G++ +++++   +P  G +  D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 330 VCSVEAEVTV---HGV 342
             + E  V     HGV
Sbjct: 138 KVTFEVFVQADAPHGV 153

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 96.9 bits (241), Expect = 1e-24
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 212 KHVWRIENFSKLRS---ECCDSQVFNSG---DQKWKIQLYPKGRRHGTGTHLAMYLALAD 265
            ++W I NFS  R    E   S  F+SG     KW +++ PKG    +  +L++YL L  
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 71

Query: 266 SATLTPGSKIYAEFTVRLLDQVQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGNG 324
                P S++ A+F   +L+              +      + G+ +++   +  +  NG
Sbjct: 72  C----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANG 127

Query: 325 CLVKDVCSVEAEVTV 339
            L  D  ++  EV+V
Sbjct: 128 LLPDDKLTLFCEVSV 142

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 96.2 bits (239), Expect = 2e-24
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 55  HYTVKINSFSLLLKTSVEKYETGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAMA 111
            Y   IN+FS   +   E  ++  F +G     KW L + P G   ++ K+++S+YL + 
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLV 70

Query: 112 NTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFND 171
           +        EV A F+  +L+   +    ++              +WGF +FI      D
Sbjct: 71  SCP----KSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLD 123

Query: 172 ASNGFLLEDTCVFGAEVFVCKE 193
            +NG L +D      EV V ++
Sbjct: 124 EANGLLPDDKLTLFCEVSVVQD 145

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 83.4 bits (206), Expect = 1e-19
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 55  HYTVKINSFSLLLKTSVEKYET----GDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 108
            Y  KI +F + LK   E+         F  G  GYK  + L+     ++    +IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 109 AMANTSS-LQLGWEVYAVFRLFLLDQNKD----NFLILQDAMGAERRFHRLKLE-----W 158
                     L W      RL +LDQ++     N   + DA      F R  +      +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 159 GFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKE 193
           G+  F+ ++A       F+ +DT +   EV    +
Sbjct: 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 26/154 (16%)

Query: 212 KHVWRIENFSKLRSE-------CCDSQVFNSGDQ--KWKIQLYPKGRRHG-TGTHLAMYL 261
            ++W+I NF                S  F +G    K  ++L+ +         ++++++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 262 ALADSAT-LTPGSKIYAEFTVRLLDQVQA------RHIAGKANFWFSASNPES------- 307
                               + +LDQ +A        I        +   P         
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 308 GWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341
           G+  ++            +  D   V  EV+   
Sbjct: 126 GYVTFMHLEALRQRTF--IKDDTLLVRCEVSTRF 157

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 74.7 bits (183), Expect = 2e-16
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 212 KHVWRIENFSKLRSE-------CCDSQVFNSGDQ--KWKIQLYPKGRRHGTGTHLAMYLA 262
             +W+I +F++ R E          S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 79

Query: 263 LADSAT-LTPGSKIYAEFTVRLLDQVQARHI-------AGKANFW--FSASNPESGWARY 312
           +               + T+ LLDQ    H+          ++F    +  N  SG   +
Sbjct: 80  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 139

Query: 313 VSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342
              +      N  +  D   ++A V + G+
Sbjct: 140 CPVSKMEAK-NSYVRDDAIFIKAIVDLTGL 168

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 14/146 (9%)

Query: 55  HYTVKINSFSLLLKTSVEKYETGDFE------AGGYKWKLVLYPAGNKSKNVKEHISVYL 108
            +  KI+ F+   + +V       F         GYK  L +Y  G+       H+S++ 
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 78

Query: 109 AMANTSS-LQLGWEVYAVFRLFLLDQN-----KDNFLILQDAMGAERRFHRLKLEWGFDE 162
            +    +   L W       L LLDQN      D F     +   +R  + + +  G   
Sbjct: 79  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138

Query: 163 FIPIKAFNDASNGFLLEDTCVFGAEV 188
           F P+    +A N ++ +D     A V
Sbjct: 139 FCPVSKM-EAKNSYVRDDAIFIKAIV 163

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 78.5 bits (193), Expect = 3e-16
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 8/144 (5%)

Query: 51  ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAM 110
            S   +   +  FS L +       +         WK+++ P     +  ++ +  +L  
Sbjct: 28  RSEATFQFTVERFSRLSE----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-Q 82

Query: 111 ANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFN 170
            N  S    W  +A   L +++   D     +        F   + +WGF  F+      
Sbjct: 83  CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVT 139

Query: 171 DASNGFLLEDTCVFGAEVFVCKER 194
           D   GF+ +D   F   V      
Sbjct: 140 DPEKGFIDDDKVTFEVFVQADAPH 163

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 73.5 bits (180), Expect = 2e-14
 Identities = 18/131 (13%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGT-HLAMYLALADSATLT 270
              + +E FS+L      S      +  WKI + P+          +  +L   ++ + +
Sbjct: 32  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ-CNAESDS 89

Query: 271 PGSKIYAEFTVRLLDQV-QARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKD 329
                +A+  +++++     +  + + +  F     + G++ +++++   +P  G +  D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149

Query: 330 VCSVEAEVTVH 340
             + E  V   
Sbjct: 150 KVTFEVFVQAD 160

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 73.9 bits (181), Expect = 9e-16
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 47  SISGASPT-HYTVKINSFSLLLKTSVEKYETGDFEA------GGYKWKLVLYPAGNKSKN 99
            +  ++    +  KI+ F+   + +V       F         GYK  L +Y  G+    
Sbjct: 35  EMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTG 93

Query: 100 VKEHISVYLAMANTSS-LQLGWEVYAVFRLFLLDQ-NKDNFLILQDAMGAERRFHRLKLE 157
              H+S++  +    +   L W       L LLDQ N+++ +           F R   +
Sbjct: 94  RGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVND 153

Query: 158 ----WGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188
                G   F P+    +A N ++ +D     A V
Sbjct: 154 MNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 187

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 73.5 bits (180), Expect = 1e-15
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 212 KHVWRIENFSKLRSE-------CCDSQVFNSGDQ--KWKIQLYPKGRRHGTGTHLAMYLA 262
             +W+I +F++ R E          S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 103

Query: 263 LADSAT-LTPGSKIYAEFTVRLLDQVQARHI-------AGKANFW--FSASNPESGWARY 312
           +               + T+ LLDQ    H+          ++F    +  N  SG   +
Sbjct: 104 VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 163

Query: 313 VSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342
              +      N  +  D   ++A V + G+
Sbjct: 164 CPVSKMEAK-NSYVRDDAIFIKAIVDLTGL 192

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 212 KHVWRIENFSKLRS---ECCDSQVFNSG---DQKWKIQLYPKGRRHGTGTHLAMYLALAD 265
            ++W I NFS  R    E   S  F+SG     KW +++ PKG    +  +L++YL L  
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 67

Query: 266 SATLTPGSKIYAEFTVRLLDQV-QARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNG 324
                P S++ A+F   +L+   +          +      + G+ +++   +  +  NG
Sbjct: 68  ----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANG 123

Query: 325 CLVKDVCSVEAEVTVHGVS 343
            L  D  ++  EV+V   S
Sbjct: 124 LLPDDKLTLFCEVSVVQDS 142

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 67.2 bits (164), Expect = 8e-13
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 19/191 (9%)

Query: 55  HYTVKINSFSLLLKTSVEKYETGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAMA 111
            Y   IN+FS   +   E  ++  F +G     KW L + P G   ++ K+++S+YL + 
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLV 66

Query: 112 NTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFND 171
           +        EV A F+  +L+   +    ++       RF + K +WGF +FI      D
Sbjct: 67  SCPK----SEVRAKFKFSILNAKGEETKAMES--QRAYRFVQGK-DWGFKKFIRRGFLLD 119

Query: 172 ASNGFLLEDTCVFGAEVFVCKERSTGKGEC-LSMIKDAPSIKHVWRIENFSKLRS--ECC 228
            +NG L +D      EV V ++     G+  ++M+K           +    L       
Sbjct: 120 EANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLA----DELGGLWENSRFT 175

Query: 229 DSQVFNSGDQK 239
           D        Q+
Sbjct: 176 DC-CLCVAGQE 185

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 67.0 bits (163), Expect = 4e-13
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 17/163 (10%)

Query: 40  EIDRFALSISGASPT-HYTVKINSFSLLLKTSVEKYETGDF------EAGGYKWKLVLYP 92
           ++D     +  AS       KI  +    + +V       +         GYK    +Y 
Sbjct: 61  DMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYL 120

Query: 93  AGNKSKNVKEHISVYLA-MANTSSLQLGWEVYAVFRLFLLDQN------KDNFLILQDAM 145
            G+       H+S++   M       L W       L L+DQ        D F    ++ 
Sbjct: 121 NGD-GMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSS 179

Query: 146 GAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188
             ++    + +  G   F+        +  ++ +DT      V
Sbjct: 180 SFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 220

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 212 KHVWRIENFSKLRSE-------CCDSQVFNSGDQ--KWKIQLYPKGRRHGTGTHLAMYLA 262
             +W+I ++ + + E          SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 136

Query: 263 LADSAT-LTPGSKIYAEFTVRLLDQVQARH--------IAGKANFW--FSASNPESGWAR 311
           +               + T+ L+DQ  +R             ++F       N  SG   
Sbjct: 137 IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 196

Query: 312 YVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS 343
           +V+     N     +  D   ++  V    + 
Sbjct: 197 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 65.8 bits (160), Expect = 5e-13
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 17/164 (10%)

Query: 39  DEIDRFALSISGASPT-HYTVKINSFSLLLKTSVEKYETG----DFEAG--GYKWKLVLY 91
            ++D     +  AS       KI  +    + +V           F  G  GYK    +Y
Sbjct: 24  ADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVY 83

Query: 92  PAGNKSKNVKEHISVYLA-MANTSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAM----- 145
             G+       H+S++   M       L W       L L+DQ      +          
Sbjct: 84  LNGD-GMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 142

Query: 146 -GAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188
              ++    + +  G   F+        +  ++ +DT      V
Sbjct: 143 SSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 184

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 63.5 bits (154), Expect = 3e-12
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 212 KHVWRIENFSKLRSE-------CCDSQVFNSGDQ--KWKIQLYPKGRRHGTGTHLAMYLA 262
             +W+I ++ + + E          SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 100

Query: 263 LADSATLTPGS-KIYAEFTVRLLDQVQARH--------IAGKANFW--FSASNPESGWAR 311
           +               + T+ L+DQ  +R             ++F       N  SG   
Sbjct: 101 IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 160

Query: 312 YVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS 343
           +V+     N     +  D   ++  V    + 
Sbjct: 161 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 65/286 (22%)

Query: 78  DFEAG--GYKWK---LVLYPAGNKSKNVKEHISVYLAMANTSS-----LQLGWEVYAVFR 127
           DFE G   Y++K    V   A   + + K  +        +       +     V    R
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 128 LF--LLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFG 185
           LF  LL + ++   ++Q  +       R+  ++      PIK      +      T ++ 
Sbjct: 67  LFWTLLSKQEE---MVQKFVEE---VLRINYKFLMS---PIKTEQRQPSM----MTRMYI 113

Query: 186 AEVFVCKERSTGKGECLSMIKDAPSIK--HVWRIENFSKLRSECCDSQVFNSGDQKWKIQ 243
                 ++R         +  D       +V R++ + KLR    + +       K  + 
Sbjct: 114 E----QRDR---------LYNDNQVFAKYNVSRLQPYLKLRQALLELR-----PAKN-VL 154

Query: 244 LYPKGRRHGTG-THLAMYLALADSATLTPGSKIY------AEFTVRLLDQVQARHIAGKA 296
           +       G+G T +A+ + L+         KI+            +L+ +Q        
Sbjct: 155 IDGVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 297 NFWFSASNPESG------WARYVSFAYFNNPGNGCLV--KDVCSVE 334
           N+   + +  +           +     + P   CL+   +V + +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.97
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.95
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.94
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.94
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.94
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.94
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.93
1d00_A	168	Tumor necrosis factor receptor associated protein	99.93
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.93
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.92
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.91
1d00_A	168	Tumor necrosis factor receptor associated protein	99.91
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.91
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.9
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.9
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.88
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.88
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.87
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.47
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.33

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.97  E-value=1.6e-30  Score=212.53  Aligned_cols=140  Identities=26%  Similarity=0.422  Sum_probs=118.6

Q ss_pred             cccccCCCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEE
Q 019087           46 LSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEV  122 (346)
Q Consensus        46 ~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~  122 (346)
                      +.+.++..++|+|+|+|||.+++..++.++|++|.+|||   +|+|++||+|+. .+..+||||||.|.+.    ..|++
T Consensus         3 ~~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~v   77 (145)
T 3ivv_A            3 GGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSEV   77 (145)
T ss_dssp             --CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSEE
T ss_pred             CCCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCcE
Confidence            356777899999999999998754478999999999996   999999999987 4567899999999875    25999


Q ss_pred             EEEEEEEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeee
Q 019087          123 YAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKE  193 (346)
Q Consensus       123 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~  193 (346)
                      .|+|+|+|+||+++........  ..++|.. ..+|||.+||++++|++++++||+||+|+|+|+|+|+++
T Consensus        78 ~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           78 RAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            9999999999998765543332  5678874 588999999999999877899999999999999999864

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=5.5e-29  Score=205.70  Aligned_cols=136  Identities=18%  Similarity=0.323  Sum_probs=113.2

Q ss_pred             CCCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEE
Q 019087           51 ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFL  130 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~l  130 (346)
                      ...|+|+|+|+|||.++    +.++|++|.+||++|+|++||+|++..+..+||||||.|... ..+.+|++.|+|+|+|
T Consensus        16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l   90 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI   90 (155)
T ss_dssp             CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred             CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence            45799999999999994    689999999999999999999997511357899999999654 3456799999999999


Q ss_pred             EeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087          131 LDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER  194 (346)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~  194 (346)
                      +||+++.....+.   ..+.|.....+|||.+||++++|++|+++||+||+|+|+|+|+|.+++
T Consensus        91 ~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A           91 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             CCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             EcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            9998875333333   578898767889999999999999888999999999999999996654

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=7.5e-29  Score=204.86  Aligned_cols=137  Identities=14%  Similarity=0.257  Sum_probs=117.5

Q ss_pred             CCCceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 019087          208 APSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRH-GTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ  286 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~  286 (346)
                      ++.+.|+|+|+||+.+. +.+.|+.|.++|++|+|.+||+|+.. +.++||||||+|... ..+..|++.|+|+|+|+||
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~   93 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY   93 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence            45689999999999995 68899999999999999999999765 356899999999654 3455799999999999999


Q ss_pred             CCCe-eeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeeecCC
Q 019087          287 VQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL  346 (346)
Q Consensus       287 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t~~~  346 (346)
                      +++. +......+.|.....+|||.+||++++|+++++|||+||+|+|+|+|+|.++||+|
T Consensus        94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            8865 55666788898767889999999999999777899999999999999999999986

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.95  E-value=3.3e-28  Score=205.30  Aligned_cols=144  Identities=18%  Similarity=0.298  Sum_probs=115.4

Q ss_pred             ccCCCcEEEEEEcCccccccc--C--CCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCE
Q 019087           49 SGASPTHYTVKINSFSLLLKT--S--VEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWE  121 (346)
Q Consensus        49 ~~~~~~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~  121 (346)
                      ..+..|+|+|+|+|||.+++.  .  +..++|++|.+|  ||+|+|++||+|++ .+.++||||||.|++++.+ ..+|+
T Consensus        19 ~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W~   97 (178)
T 4gjh_A           19 GACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWP   97 (178)
T ss_dssp             HCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCSS
T ss_pred             CcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCCc
Confidence            346789999999999998752  2  348999999999  99999999999987 4567999999999876432 35799


Q ss_pred             EEEEEEEEEEeCCCCceeEEec--cccceeeecC----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEeee
Q 019087          122 VYAVFRLFLLDQNKDNFLILQD--AMGAERRFHR----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKE  193 (346)
Q Consensus       122 ~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~  193 (346)
                      +.|+|+|+|+||.++.......  .....+.|..    ...+|||.+||++++|++|.++||+||+|+|+|+|.|.+.
T Consensus        98 v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A           98 FRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             eEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            9999999999998765433210  0002456763    3568999999999999988899999999999999976543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.94  E-value=1.7e-27  Score=218.96  Aligned_cols=180  Identities=23%  Similarity=0.378  Sum_probs=136.4

Q ss_pred             CCCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEE
Q 019087           51 ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFR  127 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~  127 (346)
                      +..|+|+|+|+|||.++...++.++|++|.+|||   +|+|++||+|++ ++.++|||+||.|....    .|++.|+|+
T Consensus         4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~~~   78 (312)
T 3hqi_A            4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK   78 (312)
T ss_dssp             EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEEE
T ss_pred             eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEEEE
Confidence            4568999999999999644478999999999995   999999999987 55679999999998653    599999999


Q ss_pred             EEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccCCcc-ceecccc
Q 019087          128 LFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKG-ECLSMIK  206 (346)
Q Consensus       128 ~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~~~~-~~~~~i~  206 (346)
                      |+|+||+++........  ..++|.. ..+|||.+||+|++|+++.+|||+||+|+|+|+|+|++......+ +....+.
T Consensus        79 ~~l~~~~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~  155 (312)
T 3hqi_A           79 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK  155 (312)
T ss_dssp             EEEECTTSCEEEEEECS--SCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCC
T ss_pred             EEEEeCCCCcccccccC--CceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccC
Confidence            99999998766554322  5778885 468999999999999877889999999999999999986532111 1223445


Q ss_pred             CCCCceEEEEEccccccC-CceeecCcEEeCCceEEE
Q 019087          207 DAPSIKHVWRIENFSKLR-SECCDSQVFNSGDQKWKI  242 (346)
Q Consensus       207 ~~~~~~~~~~I~nfs~l~-~~~~~S~~f~v~g~~w~l  242 (346)
                      .|++..    ..++..+. .....+.++.++|..+++
T Consensus       156 ~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~~  188 (312)
T 3hqi_A          156 VPECRL----ADELGGLWENSRFTDCCLCVAGQEFQA  188 (312)
T ss_dssp             CCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEEE
T ss_pred             CCCchH----HHHHHHHHhCCCCCceEEEECCEEEeH
Confidence            555443    25566655 345666788898877553

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=1e-27  Score=204.92  Aligned_cols=142  Identities=15%  Similarity=0.215  Sum_probs=113.9

Q ss_pred             cCCCcEEEEEEcCcccccc---c-CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE
Q 019087           50 GASPTHYTVKINSFSLLLK---T-SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV  122 (346)
Q Consensus        50 ~~~~~~~~~~I~nfs~~~~---~-~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~  122 (346)
                      .+..|+|+|+|+|||.+++   . .++.++|++|.+|  ||+|+|++||+|++ .+.++||||||.+++++.+ ..+|++
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp~  114 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  114 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCceE
Confidence            4568999999999999875   2 3679999999999  99999999999987 4567899999999987543 357999


Q ss_pred             EEEEEEEEEeCCCCceeEEec----c--ccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087          123 YAVFRLFLLDQNKDNFLILQD----A--MGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER  194 (346)
Q Consensus       123 ~~~~~~~ll~~~~~~~~~~~~----~--~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~  194 (346)
                      .|+|+|+|+||.++.......    .  ....+.|...+.+|||.+||++++|+  ++|||+||+|+|+|+|.|+..+
T Consensus       115 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          115 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence            999999999998764433211    0  00112233345789999999999999  5899999999999999887765

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.94  E-value=5.4e-27  Score=194.69  Aligned_cols=142  Identities=23%  Similarity=0.294  Sum_probs=107.3

Q ss_pred             CCCcEEEEEEcCcccccc--cCCC--eEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLK--TSVE--KYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~  123 (346)
                      ...|+|+|+|+|||.+++  ..|+  .++|++|.+|  ||+|+|++||+|++....++||||||.+++++.+ ..+|++.
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            357999999999999875  2466  8999999999  9999999999997622247899999999876543 4579999


Q ss_pred             EEEEEEEEeCCCCce--eEEec--cccceeeecC-----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087          124 AVFRLFLLDQNKDNF--LILQD--AMGAERRFHR-----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER  194 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~--~~~~~--~~~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~  194 (346)
                      |+|+|+|+||.+...  .....  .......|..     ...+|||.+||++++|+  +++||+||+|+|+|+|.|+.+.
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~~  159 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFDL  159 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC----
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeecC
Confidence            999999999987521  11100  0001223542     12479999999999999  6899999999999999998653

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.94  E-value=1.1e-26  Score=189.77  Aligned_cols=131  Identities=26%  Similarity=0.477  Sum_probs=111.7

Q ss_pred             CCCCceEEEEEccccccCC---ceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEE
Q 019087          207 DAPSIKHVWRIENFSKLRS---ECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFT  280 (346)
Q Consensus       207 ~~~~~~~~~~I~nfs~l~~---~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~  280 (346)
                      ....+.|+|+|+|||.+.+   +.+.|+.|.++|+   +|+|.+||+|+..++.+||||||+|...    ..|+++|+|+
T Consensus         7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~   82 (145)
T 3ivv_A            7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK   82 (145)
T ss_dssp             CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred             cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence            3456899999999999873   5799999999996   9999999999876667899999999874    3699999999


Q ss_pred             EEEEeCCCCeee--eecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087          281 VRLLDQVQARHI--AGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV  342 (346)
Q Consensus       281 ~~l~~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~  342 (346)
                      |+|+||+++++.  .....+.|. +..+|||.+||++++|++++++||+||+|+|+|+|+|+++
T Consensus        83 l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           83 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999987643  234567886 4678999999999999765689999999999999999864

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.93  E-value=7.1e-27  Score=199.67  Aligned_cols=140  Identities=21%  Similarity=0.300  Sum_probs=111.4

Q ss_pred             CCCcEEEEEEcCcccccc--cCCC--eEEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLK--TSVE--KYETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~  123 (346)
                      ...|+|+|+|+|||.+++  ..|+  .++|++|.+  |||+|+|++||+|++ .+.++||||||.+.++..++ .+|++.
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~  118 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN  118 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence            568999999999999875  2344  699999999  999999999999986 45678999999998875443 689999


Q ss_pred             EEEEEEEEeCCCCceeEEecc-ccceeeec----CCCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087          124 AVFRLFLLDQNKDNFLILQDA-MGAERRFH----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK  192 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~~~~~~~-~~~~~~F~----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~  192 (346)
                      |+|+|+|+||.++........ ......|.    ....+|||.+||++++|++ .++||+||+|+|+|+|.|.+
T Consensus       119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            999999999998743221100 00123464    2346899999999999986 57999999999999998753

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.93  E-value=9.7e-27  Score=194.77  Aligned_cols=139  Identities=22%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             CCCcEEEEEEcCccccccc--CCC--eEEcCceE--ECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLKT--SVE--KYETGDFE--AGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~~--~~~--~~~S~~f~--~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~  123 (346)
                      ...|+|+|+|+|||.+++.  .++  .++|++|.  +|||+|+|++||+|++ .+.++||||||.+.++..++ .+|++.
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~~   94 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN   94 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCceE
Confidence            4689999999999998752  355  39999996  7899999999999986 45579999999998865443 689999


Q ss_pred             EEEEEEEEeCCCCceeEEec-cccceeeecC----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEe
Q 019087          124 AVFRLFLLDQNKDNFLILQD-AMGAERRFHR----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVC  191 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~  191 (346)
                      |+|+|+|+||++........ .....+.|..    ...+|||.+||++++|+++ ++||+||+|+|+|+|+|.
T Consensus        95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            99999999999865332210 0001235653    3578999999999999953 399999999999999774

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=8.5e-27  Score=198.86  Aligned_cols=139  Identities=17%  Similarity=0.230  Sum_probs=111.0

Q ss_pred             CCCcEEEEEEcCcccccc--cCCC--eEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLK--TSVE--KYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~  123 (346)
                      ...|+|+|+|+|||.+++  ..|+  .++|++|.+|  ||+|+|++||+|++ .+.++|||+||.+++++.+ ..+|++.
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~  115 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  115 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence            368999999999999974  2355  5999999999  99999999999987 4567999999999976543 3579999


Q ss_pred             EEEEEEEEeCCCCceeEEecc--ccceeeecCC----CccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087          124 AVFRLFLLDQNKDNFLILQDA--MGAERRFHRL----KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK  192 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~~~~~~~--~~~~~~F~~~----~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~  192 (346)
                      |+|+|+|+||.++........  ....+.|...    +.+|||.+||++++|+  ++|||+||+|+|+|+|.|..
T Consensus       116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence            999999999998754332110  0012457532    4689999999999999  46999999999999997644

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.92  E-value=2.7e-26  Score=193.51  Aligned_cols=135  Identities=24%  Similarity=0.348  Sum_probs=112.1

Q ss_pred             CCCceEEEEEccccccCCc-------eeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 019087          208 APSIKHVWRIENFSKLRSE-------CCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYA  277 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~~-------~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~  277 (346)
                      ...+.|+|+|+||+.+++.       .+.|+.|.+|  |++|+|.+||+|++.+.++||||||+|.+...+ ...|++.+
T Consensus        21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a  100 (178)
T 4gjh_A           21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ  100 (178)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred             ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence            5578999999999998632       6899999999  999999999999887777899999999775432 24699999


Q ss_pred             EEEEEEEeCCCCe-eeeec-----ceeeecC----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087          278 EFTVRLLDQVQAR-HIAGK-----ANFWFSA----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV  342 (346)
Q Consensus       278 ~~~~~l~~~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~  342 (346)
                      +|+|+|+||+++. ++...     ..+.|..    .+.+|||.+||++++|+++.+|||+||+|+|+|+|.|.+.
T Consensus       101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            9999999998753 33321     3456763    3568999999999999987789999999999999987643

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.92  E-value=8.4e-26  Score=197.71  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=111.4

Q ss_pred             CCCcEEEEEEcCcccccc-c-CC--CeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLK-T-SV--EKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~-~-~~--~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~  123 (346)
                      ...|+|+|+|+|||.+++ . .|  ..++|++|.+|  ||+|+|++||+|++ .+.++|||+||.+++++.+ ..+|++.
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~~  151 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  151 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcEE
Confidence            478999999999999875 2 23  38999999999  99999999999987 4568999999999876543 4579999


Q ss_pred             EEEEEEEEeCCCCceeEEecc--ccceeeecC----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087          124 AVFRLFLLDQNKDNFLILQDA--MGAERRFHR----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK  192 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~  192 (346)
                      |+|+|+|+||.++........  ....+.|..    .+.+|||.+||++++|+  ++|||+||+|+|+|+|.|.+
T Consensus       152 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~  224 (228)
T 1flk_A          152 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD  224 (228)
T ss_dssp             CCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTT
T ss_pred             EEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccc
Confidence            999999999998754322110  002335642    34689999999999999  48999999999999998754

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.91  E-value=1.6e-25  Score=191.25  Aligned_cols=133  Identities=23%  Similarity=0.344  Sum_probs=109.7

Q ss_pred             CCCceEEEEEccccccCCc-------eeecCcEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 019087          208 APSIKHVWRIENFSKLRSE-------CCDSQVFNS--GDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYA  277 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~~-------~~~S~~f~v--~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~  277 (346)
                      +..+.|+|+|+|||.+.+.       .+.|+.|.+  ||++|+|.+||+|++.+.++|||+||++.+...++ ..|++.+
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            4678999999999998732       489999999  99999999999998776678999999998865544 5799999


Q ss_pred             EEEEEEEeCCCCeeeeecc-----eeeec----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087          278 EFTVRLLDQVQARHIAGKA-----NFWFS----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG  341 (346)
Q Consensus       278 ~~~~~l~~~~~~~~~~~~~-----~~~F~----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~  341 (346)
                      +|+|+|+||+++++.....     ...|.    ..+.+|||.+||++++|++ .+|||+||+|+|+|+|.|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            9999999999875443221     12354    2356899999999999995 37999999999999998853

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.91  E-value=3.2e-25  Score=185.48  Aligned_cols=133  Identities=23%  Similarity=0.340  Sum_probs=108.7

Q ss_pred             CCCceEEEEEccccccCCc-------eeecCcEE--eCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 019087          208 APSIKHVWRIENFSKLRSE-------CCDSQVFN--SGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYA  277 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~~-------~~~S~~f~--v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~  277 (346)
                      ...+.|+|+|+|||.+++.       .+.|+.|.  ++|++|+|.+||+|++.+.++||||||+|.+...++ ..|++.+
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            3578999999999998632       38899995  899999999999998766678999999998765543 5799999


Q ss_pred             EEEEEEEeCCCCeeeeecc-----eeeecC----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087          278 EFTVRLLDQVQARHIAGKA-----NFWFSA----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG  341 (346)
Q Consensus       278 ~~~~~l~~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~  341 (346)
                      +|+|+|+||++.++.....     .+.|..    .+.+|||.+||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus        96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence            9999999999875443321     235653    3578999999999999973 4999999999999998753

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.91  E-value=4.2e-25  Score=188.80  Aligned_cols=134  Identities=20%  Similarity=0.292  Sum_probs=110.1

Q ss_pred             CCCceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 019087          208 APSIKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYA  277 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~  277 (346)
                      ...+.|+|+|+|||.+++       +.+.|+.|.+|  |++|+|.+||+|++.+.++||||||.+.+++.+. ..|++.+
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a  116 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence            457899999999999863       47899999999  9999999999998877778999999998765432 4799999


Q ss_pred             EEEEEEEeCCCCe-eeeec---------ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087          278 EFTVRLLDQVQAR-HIAGK---------ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS  343 (346)
Q Consensus       278 ~~~~~l~~~~~~~-~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t  343 (346)
                      +|+|+|+||.++. ++..+         ..+.|...+.+|||.+||++++|++  +|||+||+|+|+|+|.|+...
T Consensus       117 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCC
Confidence            9999999998653 33221         1222334467899999999999996  799999999999999987643

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.90  E-value=2.4e-24  Score=178.69  Aligned_cols=132  Identities=14%  Similarity=0.156  Sum_probs=103.0

Q ss_pred             CCceEEEEEccccccCC-----c--eeecCcEEeC--CceEEEEEEeCCCCCC-CCCeEEEEEEecCCCCC-CCCCeEEE
Q 019087          209 PSIKHVWRIENFSKLRS-----E--CCDSQVFNSG--DQKWKIQLYPKGRRHG-TGTHLAMYLALADSATL-TPGSKIYA  277 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~~-----~--~~~S~~f~v~--g~~w~l~~yp~g~~~~-~~~~ls~~L~~~~~~~~-~~~w~~~~  277 (346)
                      ..+.|+|+|+|||.+++     +  .+.|+.|.+|  |++|+|.+||+|++.+ +++||||||++.+.+.+ ...|++.+
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a   82 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence            35789999999999863     2  7899999999  9999999999997654 36899999999875543 34699999


Q ss_pred             EEEEEEEeCCCCe---eeeecc-----eeeecC-----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087          278 EFTVRLLDQVQAR---HIAGKA-----NFWFSA-----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV  342 (346)
Q Consensus       278 ~~~~~l~~~~~~~---~~~~~~-----~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~  342 (346)
                      +++|+|+||.+..   +.....     ...|..     ...+|||++||++++|++  +|||+||+|+|+|+|.|+.+
T Consensus        83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            9999999998652   111111     123432     123799999999999995  79999999999999999865

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.90  E-value=1.2e-24  Score=185.54  Aligned_cols=131  Identities=21%  Similarity=0.332  Sum_probs=108.3

Q ss_pred             CCceEEEEEccccccCC-----c--eeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087          209 PSIKHVWRIENFSKLRS-----E--CCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE  278 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~~-----~--~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~  278 (346)
                      ..+.|+|+|+|||.++.     +  .+.|+.|.+|  |++|+|.+||+|++.++++|||+||++.+++.+. ..|++.++
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~  117 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  117 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence            56899999999999862     2  4899999999  9999999999998777778999999998765443 46999999


Q ss_pred             EEEEEEeCCCCe-eeeecc-----eeeecCC----CCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087          279 FTVRLLDQVQAR-HIAGKA-----NFWFSAS----NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG  341 (346)
Q Consensus       279 ~~~~l~~~~~~~-~~~~~~-----~~~F~~~----~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~  341 (346)
                      |+|+|+||.++. ++....     .+.|...    +.+|||++||++++|++  +|||+||+|+|+|+|.|.+
T Consensus       118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence            999999999863 433221     2457532    46899999999999987  5999999999999997754

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=206.65  Aligned_cols=137  Identities=18%  Similarity=0.306  Sum_probs=112.5

Q ss_pred             cCCCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEE
Q 019087           50 GASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLF  129 (346)
Q Consensus        50 ~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~  129 (346)
                      ....++|+|+|+|||.+++    .++|++|.+||++|+|++||+|+...+..+||||||.|.+. ..+.+|.+.|+|+|.
T Consensus        27 ~~~~~~~~w~I~nfS~~~~----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~  101 (522)
T 2f1z_A           27 WRSEATFQFTVERFSRLSE----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK  101 (522)
T ss_dssp             CCSEEEEEEEESSCTTCCS----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEE
T ss_pred             ccCCcEEEEEECChhhcCC----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEE
Confidence            3567999999999999963    89999999999999999999997522357899999999876 345689999999999


Q ss_pred             EEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087          130 LLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER  194 (346)
Q Consensus       130 ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~  194 (346)
                      |+|+.++.....+.   ..+.|.....+|||.+||++++|.++++|||+||+++|+|+|+|..+.
T Consensus       102 l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          102 IINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             ECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             EEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            99998765544433   578898767889999999999998888999999999999999996543

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.88  E-value=6.7e-24  Score=185.59  Aligned_cols=133  Identities=21%  Similarity=0.323  Sum_probs=109.7

Q ss_pred             CCceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087          209 PSIKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE  278 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~  278 (346)
                      ..+.|+|+|+|||.++.       ..+.|+.|.+|  |++|+|.+||+|++.+.++|||+||++.+++.++ ..|++.++
T Consensus        74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~  153 (228)
T 1flk_A           74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  153 (228)
T ss_dssp             SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence            57899999999999863       26899999999  9999999999998877778999999998765443 47999999


Q ss_pred             EEEEEEeCCCCe-eeeec-----ceeeecC----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087          279 FTVRLLDQVQAR-HIAGK-----ANFWFSA----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS  343 (346)
Q Consensus       279 ~~~~l~~~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t  343 (346)
                      |+|+|+||.+++ ++...     ..+.|..    .+.+|||++||++++|++  +|||+||+|+|+|+|.|.+..
T Consensus       154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  226 (228)
T 1flk_A          154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  226 (228)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred             EEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence            999999998764 33221     1234642    346899999999999997  799999999999999886543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.88  E-value=1.9e-22  Score=185.35  Aligned_cols=128  Identities=27%  Similarity=0.480  Sum_probs=106.3

Q ss_pred             CceEEEEEccccccC---CceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 019087          210 SIKHVWRIENFSKLR---SECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRL  283 (346)
Q Consensus       210 ~~~~~~~I~nfs~l~---~~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l  283 (346)
                      .+.|+|+|+||+.++   ++.+.|+.|.+||+   +|+|.+||+|++.++++|+|+||.|....    .|++.++|+|+|
T Consensus         6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~----~~~v~a~~~~~l   81 (312)
T 3hqi_A            6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI   81 (312)
T ss_dssp             EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC----C-CEEEEEEEEE
T ss_pred             EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC----CCcEEEEEEEEE
Confidence            368999999999986   56789999999995   99999999998776778999999998642    589999999999


Q ss_pred             EeCCCCeeee--ecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087          284 LDQVQARHIA--GKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV  342 (346)
Q Consensus       284 ~~~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~  342 (346)
                      +|++++....  ....+.|.. +.+|||.+||+|++|+++.+|||+||+|+|+|+|.|++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            9999876432  245678874 468999999999999877789999999999999999953

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=197.59  Aligned_cols=135  Identities=13%  Similarity=0.256  Sum_probs=112.9

Q ss_pred             CCCceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCC-CCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 019087          208 APSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHG-TGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ  286 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~-~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~  286 (346)
                      ...+.|+|+|+|||.+.+ .+.|+.|.+||++|+|.+||+|+..+ .++|||+||.|... ..+..|++.|+|+|+|+|+
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~  105 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY  105 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence            456899999999999875 88899999999999999999997543 56799999999876 4456799999999999999


Q ss_pred             CCCe-eeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeeec
Q 019087          287 VQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSN  344 (346)
Q Consensus       287 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t~  344 (346)
                      .++. +......+.|.....+|||.+||++++|.++++|||+||+++|+|+|.|...+|
T Consensus       106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g  164 (522)
T 2f1z_A          106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  164 (522)
T ss_dssp             TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred             CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence            8753 556677788987778899999999999987678999999999999999977665

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.47  E-value=9.8e-14  Score=135.40  Aligned_cols=139  Identities=20%  Similarity=0.284  Sum_probs=106.7

Q ss_pred             cccCCCcEEEEEEcCcccccccCCCeEEcCceEE-CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE-EE
Q 019087           48 ISGASPTHYTVKINSFSLLLKTSVEKYETGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV-YA  124 (346)
Q Consensus        48 ~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~-gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~-~~  124 (346)
                      +.+..+..+.|+|.||+++.+..+..++||+|+. .||+++|.+||++      ..|+|||++|++++.+ .+.|++ .-
T Consensus       400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~  473 (592)
T 4gwm_A          400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ  473 (592)
T ss_dssp             EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred             EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence            3556788999999999999875577899999974 5999999999875      4689999999998664 578999 46


Q ss_pred             EEEEEEEeCCCCceeEEec--cc---------------------cceeeecC-----CCccccccceeeccccccCCCCc
Q 019087          125 VFRLFLLDQNKDNFLILQD--AM---------------------GAERRFHR-----LKLEWGFDEFIPIKAFNDASNGF  176 (346)
Q Consensus       125 ~~~~~ll~~~~~~~~~~~~--~~---------------------~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~f  176 (346)
                      +++|.|+||+++....+..  +.                     .....|..     .+.+|||..||+++.|.  +..|
T Consensus       474 q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~f  551 (592)
T 4gwm_A          474 QATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDF  551 (592)
T ss_dssp             EEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTS
T ss_pred             EEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcCc
Confidence            8999999998764322110  00                     00001111     13468999999999999  6789


Q ss_pred             eeCCEEEEEEEEEEeeec
Q 019087          177 LLEDTCVFGAEVFVCKER  194 (346)
Q Consensus       177 l~dD~l~i~~~v~v~~~~  194 (346)
                      |+||.|+|.+.|.-+...
T Consensus       552 iK~d~~~i~~~~eD~~~l  569 (592)
T 4gwm_A          552 IKGDDVYILLTVEDISHL  569 (592)
T ss_dssp             SBTTBEEEEEEEEECGGG
T ss_pred             ccCCeEEEEEEEEeCccc
Confidence            999999999999777665

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.33  E-value=1.8e-12  Score=126.47  Aligned_cols=127  Identities=17%  Similarity=0.179  Sum_probs=98.6

Q ss_pred             CCCceEEEEEccccccCC---ceeecCcEE-eCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeE-EEEEEE
Q 019087          208 APSIKHVWRIENFSKLRS---ECCDSQVFN-SGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKI-YAEFTV  281 (346)
Q Consensus       208 ~~~~~~~~~I~nfs~l~~---~~~~S~~f~-v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~-~~~~~~  281 (346)
                      -+++.+.|+|+||++++.   ..++|+.|. ..|++|+|.+|+++     +.++|+|+++.+++++. ..|++ .-+++|
T Consensus       403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~  477 (592)
T 4gwm_A          403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM  477 (592)
T ss_dssp             SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred             CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence            456789999999999883   478899775 67999999999876     36999999999977654 77999 578999


Q ss_pred             EEEeCCCCeeeeecceeeec---------------------------C-----CCCCCChhcccCccccCCCCCCceeCC
Q 019087          282 RLLDQVQARHIAGKANFWFS---------------------------A-----SNPESGWARYVSFAYFNNPGNGCLVKD  329 (346)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~F~---------------------------~-----~~~~~G~~~fi~~~~L~~~~~~yl~dD  329 (346)
                      .|++|+.+....+.....|.                           .     ++.+|||..||+++.|+.  +.||+||
T Consensus       478 ~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~d  555 (592)
T 4gwm_A          478 TLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKGD  555 (592)
T ss_dssp             EECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBTT
T ss_pred             EEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccCC
Confidence            99999865311112222221                           1     123689999999999986  6799999


Q ss_pred             EEEEEEEEEEEe
Q 019087          330 VCSVEAEVTVHG  341 (346)
Q Consensus       330 ~l~i~~~V~i~~  341 (346)
                      .|+|.++|+-+.
T Consensus       556 ~~~i~~~~eD~~  567 (592)
T 4gwm_A          556 DVYILLTVEDIS  567 (592)
T ss_dssp             BEEEEEEEEECG
T ss_pred             eEEEEEEEEeCc
Confidence            999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	6e-20
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	8e-20
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	7e-17
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	5e-15
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	4e-16
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	4e-14
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	8e-16
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	6e-13

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 6e-20
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 212 KHVWRIENFSKLRS---ECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALAD 265
            ++W I NFS  R    E   S  F+SG     KW +++ PKG    +  +L++YL L  
Sbjct: 6   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 65

Query: 266 SATLTPGSKIYAEFTVRLLDQVQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGNG 324
                P S++ A+F   +L+              +      + G+ +++   +  +  NG
Sbjct: 66  ----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANG 121

Query: 325 CLVKDVCSVEAEVTV 339
            L  D  ++  EV+V
Sbjct: 122 LLPDDKLTLFCEVSV 136

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 8e-20
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 56  YTVKINSFSLLLKTSVEKYETGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAMAN 112
           Y   IN+FS   +   E  ++  F +G     KW L + P G   ++ K+++S+YL + +
Sbjct: 7   YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLVS 65

Query: 113 TSSLQLGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDA 172
                   EV A F+  +L+   +    ++              +WGF +FI      D 
Sbjct: 66  CPK----SEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDE 118

Query: 173 SNGFLLEDTCVFGAEVFVCKERSTGKGE 200
           +NG L +D      EV V ++     G+
Sbjct: 119 ANGLLPDDKLTLFCEVSVVQDSVNISGQ 146

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 7e-17
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 20/149 (13%)

Query: 212 KHVWRIENFSKLR-------SECCDSQVFNSGDQ--KWKIQLYPKGRRHGTGTHLAMYLA 262
             +W+I +F + R            S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 63

Query: 263 LADSATLTPG-SKIYAEFTVRLLDQVQARHIAGKANFW---------FSASNPESGWARY 312
           +               + T+ LLDQ    H+                 +  N  SG   +
Sbjct: 64  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 123

Query: 313 VSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341
              +      N  +  D   ++A V + G
Sbjct: 124 CPVSKM-EAKNSYVRDDAIFIKAIVDLTG 151

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 5e-15
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 14/146 (9%)

Query: 55  HYTVKINSFSLLLKTSVEKYETG----DFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 108
            +  KI+ F    + +V           F     GYK  L +Y  G+ +     H+S++ 
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR-GTHLSLFF 62

Query: 109 AMANTSSLQ-LGWEVYAVFRLFLLDQNK-----DNFLILQDAMGAERRFHRLKLEWGFDE 162
            +    +   L W       L LLDQN      D F     +   +R  + + +  G   
Sbjct: 63  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 122

Query: 163 FIPIKAFNDASNGFLLEDTCVFGAEV 188
           F P+    +A N ++ +D     A V
Sbjct: 123 FCPVSKM-EAKNSYVRDDAIFIKAIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 4e-16
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 22/153 (14%)

Query: 212 KHVWRIENFSKL-------RSECCDSQVFNSGDQ--KWKIQLYPKGRRHGTGTHLAMYLA 262
             +W+I ++ +        ++    SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 263 LADSATLTPGS-KIYAEFTVRLLDQVQARHIAGKA----------NFWFSASNPESGWAR 311
           +               + T+ L+DQ  +R   G A                 N  SG   
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 312 YVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSN 344
           +V+     N     +  D   ++  V    + +
Sbjct: 124 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 154

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 4e-14
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 55  HYTVKINSFSLLLKTSV----EKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 108
               KI  +    + +V        +  F  G  GYK    +Y  G+       H+S++ 
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK-GTHLSLFF 62

Query: 109 AMANTSSLQ-LGWEVYAVFRLFLLDQNKDNFLIL------QDAMGAERRFHRLKLEWGFD 161
            +        L W       L L+DQ      +        ++   ++    + +  G  
Sbjct: 63  VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 122

Query: 162 EFIPIKAFNDASNGFLLEDTCVFGAEV 188
            F+        +  ++ +DT      V
Sbjct: 123 VFVAQTVLE--NGTYIKDDTIFIKVIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 8e-16
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 18/150 (12%)

Query: 55  HYTVKINSFSLLLKTSV----EKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 108
            Y  KI +F + LK           +  F  G  GYK  + L+     ++    +IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 109 AMANTSSLQ-LGWEVYAVFRLFLLDQNKD----NFLILQDAMGAERRFHRLKLE-----W 158
                     L W      RL +LDQ++     N   + DA      F R  +      +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 159 GFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188
           G+  F+ ++A       F+ +DT +   EV
Sbjct: 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 6e-13
 Identities = 18/151 (11%), Positives = 42/151 (27%), Gaps = 26/151 (17%)

Query: 212 KHVWRIENFSKLR-------SECCDSQVFNSGDQ--KWKIQLYPKGRRHG-TGTHLAMYL 261
            ++W+I NF                S  F +G    K  ++L+ +         ++++++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 262 ALADSATLTP-GSKIYAEFTVRLLDQVQ----------ARHIAGKANF---WFSASNPES 307
                   +           + +LDQ +                   F       +    
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 308 GWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338
           G+  ++            +  D   V  EV+
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.95
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.94
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.93
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.93
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.91
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.91
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.89
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.87

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-28  Score=197.60  Aligned_cols=137  Identities=26%  Similarity=0.408  Sum_probs=117.2

Q ss_pred             CCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEE
Q 019087           52 SPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRL  128 (346)
Q Consensus        52 ~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~  128 (346)
                      ...+|+|+|+|||.+++..+++++||.|.+||+   +|+|++||+|+. ++..+||||||.+.+..    .|++.++|+|
T Consensus         3 ~~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~-~~~~~~lSv~L~~~~~~----~~~v~~~~~~   77 (146)
T d2cr2a1           3 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFKF   77 (146)
T ss_dssp             EEEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSS-SSSSSBCCEEEECCCCS----SSEEEEECEE
T ss_pred             eEEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCC-CCCCCEEEEEEEeccCC----CceEEEEEEE
Confidence            357899999999998765578999999998875   899999999987 67788999999998754    4999999999


Q ss_pred             EEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccC
Q 019087          129 FLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERST  196 (346)
Q Consensus       129 ~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~  196 (346)
                      .|+|++++.......   ..+.|...+.+|||.+||++++|.++.+|||+||+|+|+|+|+|+++...
T Consensus        78 ~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~~~  142 (146)
T d2cr2a1          78 SILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVN  142 (146)
T ss_dssp             EEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCSCC
T ss_pred             EEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCCCC
Confidence            999999887665544   33344445688999999999999999999999999999999999998743

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-27  Score=192.05  Aligned_cols=137  Identities=21%  Similarity=0.319  Sum_probs=108.9

Q ss_pred             CcEEEEEEcCccccccc----CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEE
Q 019087           53 PTHYTVKINSFSLLLKT----SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAV  125 (346)
Q Consensus        53 ~~~~~~~I~nfs~~~~~----~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~  125 (346)
                      .|+|+|+|+|||.+++.    .++.++||+|.+|  ||+|+|++||+|++ ++.++||||||++..+..+ ...|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccccceeeE
Confidence            48999999999998752    3567999999998  99999999999987 5678999999999987543 457999999


Q ss_pred             EEEEEEeCCCCceeEEeccc-cceee----ecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEe
Q 019087          126 FRLFLLDQNKDNFLILQDAM-GAERR----FHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVC  191 (346)
Q Consensus       126 ~~~~ll~~~~~~~~~~~~~~-~~~~~----F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~  191 (346)
                      |+|+|+||.+.......... .....    +.....+|||.+||++++|+ +++|||+||+|+|+|+|.|.
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            99999999876544332100 01112    33345789999999999995 45799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8e-27  Score=190.71  Aligned_cols=135  Identities=16%  Similarity=0.230  Sum_probs=108.4

Q ss_pred             CcEEEEEEcCccccccc----CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEE
Q 019087           53 PTHYTVKINSFSLLLKT----SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAV  125 (346)
Q Consensus        53 ~~~~~~~I~nfs~~~~~----~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~  125 (346)
                      .|+|+|+|+|||.+++.    .+..++||+|.+|  ||+|+|++||+|++ ++..+||||||.+.+++.+ ...|++.++
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQK   80 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTTTTSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccCCcEEEE
Confidence            58999999999998652    3568999999998  99999999999987 5668999999999987543 467999999


Q ss_pred             EEEEEEeCCCCceeEEeccc--cc----eeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEE
Q 019087          126 FRLFLLDQNKDNFLILQDAM--GA----ERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV  190 (346)
Q Consensus       126 ~~~~ll~~~~~~~~~~~~~~--~~----~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v  190 (346)
                      |+|+|+||.+..........  ..    .+.+.....+|||.+||++++|+  ++|||+||+|+|+|+|.+
T Consensus        81 ~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          81 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             EEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            99999999877554321100  01    12233445789999999999998  689999999999999854

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=188.28  Aligned_cols=137  Identities=22%  Similarity=0.315  Sum_probs=108.8

Q ss_pred             CCCcEEEEEEcCccccccc----CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC-CCCCCEEE
Q 019087           51 ASPTHYTVKINSFSLLLKT----SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS-LQLGWEVY  123 (346)
Q Consensus        51 ~~~~~~~~~I~nfs~~~~~----~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~~~  123 (346)
                      .+.|+|+|+|+|||.+++.    .++.++||+|.+|  ||+|+|.+||+|.......+||||||.+.++.. ...+|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            4679999999999998652    3568999999999  999999999999774445789999999998754 35689999


Q ss_pred             EEEEEEEEeCCCCceeEEecc----cc-----ceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087          124 AVFRLFLLDQNKDNFLILQDA----MG-----AERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  189 (346)
Q Consensus       124 ~~~~~~ll~~~~~~~~~~~~~----~~-----~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~  189 (346)
                      ++++|.|+||++.........    ..     ..++|.....+|||.+||++++|+  ++|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence            999999999987654321110    00     012344445789999999999998  68999999999999985

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-25  Score=178.51  Aligned_cols=129  Identities=26%  Similarity=0.437  Sum_probs=108.9

Q ss_pred             ceEEEEEccccccCC---ceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEE
Q 019087          211 IKHVWRIENFSKLRS---ECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLL  284 (346)
Q Consensus       211 ~~~~~~I~nfs~l~~---~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~  284 (346)
                      ..|+|+|.||+.+++   +.+.|+.|.++|+   +|+|.+||+|+..+..+||||||.+....    .|+++++++|+|+
T Consensus         5 ~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~~----~~~v~~~~~~~l~   80 (146)
T d2cr2a1           5 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSIL   80 (146)
T ss_dssp             EEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCCS----SSEEEEECEEEEE
T ss_pred             EEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccCC----CceEEEEEEEEEE
Confidence            468999999998873   4689999998874   89999999999887788999999988753    5999999999999


Q ss_pred             eCCCCee-eeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087          285 DQVQARH-IAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS  343 (346)
Q Consensus       285 ~~~~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t  343 (346)
                      |++++.. ......+.+...+.+|||++||++++|.++.+|||+||+|+|+|+|+|++++
T Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             CTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             cCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            9988753 2233333444456889999999999999988999999999999999999764

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.9e-25  Score=178.46  Aligned_cols=130  Identities=21%  Similarity=0.314  Sum_probs=105.3

Q ss_pred             CceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 019087          210 SIKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYAEF  279 (346)
Q Consensus       210 ~~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~  279 (346)
                      ++.++|+|.||+.+.+       ..+.|+.|.++  |++|+|.+||+|+..++++|+||||++..+..+ ...|++.+++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            4789999999998852       35899999998  999999999999887777899999999876543 3579999999


Q ss_pred             EEEEEeCCCCeeeeec---------ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEE
Q 019087          280 TVRLLDQVQARHIAGK---------ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVH  340 (346)
Q Consensus       280 ~~~l~~~~~~~~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~  340 (346)
                      +|+|+||.+..+....         ..+.+...+.+|||.+||++++|+. ++|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~-~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCC-STTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcc-cCCcEeCCEEEEEEEEEec
Confidence            9999999876532211         1122333457899999999999964 5799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-24  Score=175.53  Aligned_cols=129  Identities=21%  Similarity=0.301  Sum_probs=105.4

Q ss_pred             CceEEEEEccccccC-------CceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 019087          210 SIKHVWRIENFSKLR-------SECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYAEF  279 (346)
Q Consensus       210 ~~~~~~~I~nfs~l~-------~~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~  279 (346)
                      +++|+|+|.||+.+.       ...++|+.|.++  |++|+|.+||+|++.+.++||||||++.+.+.+ ...|+++++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            478999999999875       236899999998  899999999999987777899999999876543 3579999999


Q ss_pred             EEEEEeCCCCe-eeeec---------ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEE
Q 019087          280 TVRLLDQVQAR-HIAGK---------ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVH  340 (346)
Q Consensus       280 ~~~l~~~~~~~-~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~  340 (346)
                      +|.|+||.+.. +....         ..+.+...+.+|||.+||++++|++  +|||+||+|+|+|+|.+.
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~  150 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTS  150 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCS
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeC
Confidence            99999998754 22111         1233344567899999999999985  799999999999998754

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8e-23  Score=166.60  Aligned_cols=128  Identities=14%  Similarity=0.146  Sum_probs=102.7

Q ss_pred             CCceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCC-CCeEEEEEEecCCCCC-CCCCeEEE
Q 019087          209 PSIKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGT-GTHLAMYLALADSATL-TPGSKIYA  277 (346)
Q Consensus       209 ~~~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~-~~~ls~~L~~~~~~~~-~~~w~~~~  277 (346)
                      ..+.++|+|+||+++++       ..+.|+.|.++  |++|+|.+||+|+..++ ++|+||||++.++..+ ...|++.+
T Consensus         3 ~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~   82 (155)
T d1lb6a_           3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (155)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEEE
Confidence            35889999999999852       36899999998  99999999999977653 5799999999876543 35799999


Q ss_pred             EEEEEEEeCCCCee-e--eec----------ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087          278 EFTVRLLDQVQARH-I--AGK----------ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT  338 (346)
Q Consensus       278 ~~~~~l~~~~~~~~-~--~~~----------~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~  338 (346)
                      +++|.|++|++... .  ...          ..+.+...+.+|||.+||++++|++  +|||+||+|+|+|+|+
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            99999999987531 1  110          1123344456799999999999985  7999999999999985