Citrus Sinensis ID: 019113

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccEEEEEEccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHccHHHHHcccccccEEEEEEEccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHcccccccccccEEEEccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEccccccccccEEHEEcccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHccHHcccHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccEEEEEcccccHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcccccccccEHHccccccccccccccccccccccccccHHHHHHHHcccEEEcccccccccEEEccccccccccHHHHHHHHHHHHHccccccccccccc
MVTVSHEAVTQFQALMdqvdeplkitfqnihrgyptETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEidkilskpivptelyravrdsqligmsgysreeHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQineyrdrvilpsasakhgrpittCVKVLDMTGLKLSALSQIKLLTIIStvddlnypektntyyIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKImdfeslphfcrredsgssrssenkncfsldhpfHQQLYNYIKqqslisepiqpvkqgsfhvdlpepaaegtEIAKTIESELHKIEnrngltqslddv
MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPsasakhgrpiTTCVKVLDMTGLKLSALSQIKLLTIistvddlnypEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIqvlqgsgrdelLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESelhkienrngltqslddv
MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCrredsgssrsseNKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
********VTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFC***************CFSLDHPFHQQLYNYIKQQSLIS*************************************************
****SHEAV****************TFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIK********************LPEPAAEGTEIAKTIESELHK**************
********VTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCR************KNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
****SHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPV**GSFHVDLP******TEIAKTIE*ELHKIE************
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
Q75DK1308 SEC14 cytosolic factor OS yes no 0.563 0.633 0.279 2e-16
Q03606 719 CRAL-TRIO domain-containi yes no 0.618 0.297 0.271 1e-15
Q0V9N0 707 SEC14-like protein 5 OS=X yes no 0.618 0.302 0.283 3e-15
P46250301 SEC14 cytosolic factor OS N/A no 0.560 0.644 0.282 4e-15
O43304 696 SEC14-like protein 5 OS=H yes no 0.615 0.306 0.278 5e-15
Q92503 715 SEC14-like protein 1 OS=H no no 0.621 0.300 0.271 8e-15
P24280304 SEC14 cytosolic factor OS yes no 0.560 0.638 0.265 2e-14
P58875403 SEC14-like protein 2 OS=B no no 0.682 0.585 0.281 6e-14
P24859301 SEC14 cytosolic factor OS yes no 0.641 0.737 0.251 7e-14
Q9VMD6 659 Protein real-time OS=Dros yes no 0.621 0.326 0.280 8e-14
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function desciption
 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 34/229 (14%)

Query: 38  TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGY 97
           TL+RFL+AR  +V+ A  M  +C  WR +N +D I                        +
Sbjct: 55  TLLRFLRARKFDVAAARAMFENCEKWRKENGVDTIFED---------------------F 93

Query: 98  SREEHYIFSSILSQHCHLLQ--SLPVFAVGVG---LSTFDKASVHCYVQSHIQINEYRD- 151
             EE  + +    Q+ H       PV+   +G   L+   K +    +  ++ I EY   
Sbjct: 94  HYEEKPLVAKFYPQYYHKTDKDGRPVYIEELGAVNLTEMYKITTQERMLKNL-IWEYESF 152

Query: 152 -RVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLN---YPEKTNTY 207
            R  LP++S +    + T   +LD+ G+ +SA +Q+  L+ +    ++    YPE+   +
Sbjct: 153 SRYRLPASSRQADCLVETSCTILDLKGISISAAAQV--LSYVREASNIGQNYYPERMGKF 210

Query: 208 YIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP 256
           Y++N P+ FSA +++ KP L   T  KI +L  S + ELLK +  E+LP
Sbjct: 211 YMINAPFGFSAAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 259
Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)
>sp|Q03606|YN02_CAEEL CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=4 SV=3 Back     alignment and function description
>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1 Back     alignment and function description
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3 Back     alignment and function description
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P58875|S14L2_BOVIN SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q9VMD6|RETM_DROME Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
224086324345 predicted protein [Populus trichocarpa] 0.950 0.953 0.775 1e-159
255579158336 SEC14 cytosolic factor, putative [Ricinu 0.950 0.979 0.778 1e-157
224137200329 predicted protein [Populus trichocarpa] 0.927 0.975 0.747 1e-149
359494856338 PREDICTED: SEC14 cytosolic factor-like [ 0.945 0.967 0.754 1e-148
356555773329 PREDICTED: SEC14-like protein 1-like [Gl 0.927 0.975 0.742 1e-146
351722583324 polyphosphoinositide binding protein Ssh 0.930 0.993 0.736 1e-146
356532836329 PREDICTED: SEC14-like protein 1-like [Gl 0.927 0.975 0.742 1e-146
255644649324 unknown [Glycine max] gi|255644661|gb|AC 0.930 0.993 0.733 1e-146
255647651329 unknown [Glycine max] 0.927 0.975 0.736 1e-144
449529250336 PREDICTED: LOW QUALITY PROTEIN: CRAL-TRI 0.945 0.973 0.723 1e-143
>gi|224086324|ref|XP_002307849.1| predicted protein [Populus trichocarpa] gi|222853825|gb|EEE91372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/348 (77%), Positives = 301/348 (86%), Gaps = 19/348 (5%)

Query: 1   MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60
           M TVSH+A+ QF+ALMDQV+EPLK  +QN+H+GY  ETL RFLKAR+ N+ KAHKML+DC
Sbjct: 1   MGTVSHDAINQFKALMDQVEEPLKRAYQNVHQGYHAETLARFLKAREWNLIKAHKMLVDC 60

Query: 61  LHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLP 120
           LHWR QNEID IL+KPI+P +LYRAVRDSQLIGMSGYSRE                  LP
Sbjct: 61  LHWRVQNEIDNILTKPIIPADLYRAVRDSQLIGMSGYSRE-----------------GLP 103

Query: 121 VFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKL 180
           VFA GVGLSTFDKASVH YVQSHIQINEYRDR++LP+AS K+GRPITTCVKVLDMTGLKL
Sbjct: 104 VFAHGVGLSTFDKASVHYYVQSHIQINEYRDRIVLPTASKKYGRPITTCVKVLDMTGLKL 163

Query: 181 SALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQG 240
           SAL+QIKL+TIIST+DD+NYPEKTNTYYIVN PYIFSACWKVVKPLLQERTRKK+QVL G
Sbjct: 164 SALNQIKLMTIISTIDDMNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSG 223

Query: 241 SGRDELLKIMDFESLPHFCRREDSGSSRSSE--NKNCFSLDHPFHQQLYNYIKQQSLISE 298
           +GRDELLKIMD  SLPHFC+RE SGSSR SE  N+NCFSLDHPFHQQLYNYIKQQSL+SE
Sbjct: 224 NGRDELLKIMDAASLPHFCKREGSGSSRHSEYANENCFSLDHPFHQQLYNYIKQQSLVSE 283

Query: 299 PIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV 346
           P QP+KQGS HVDLPEPAAEGTEI KTIESE+HK+EN NGL+ SLD +
Sbjct: 284 PTQPIKQGSVHVDLPEPAAEGTEIVKTIESEMHKLENGNGLSGSLDGL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579158|ref|XP_002530426.1| SEC14 cytosolic factor, putative [Ricinus communis] gi|223530034|gb|EEF31957.1| SEC14 cytosolic factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224137200|ref|XP_002322498.1| predicted protein [Populus trichocarpa] gi|222867128|gb|EEF04259.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494856|ref|XP_002273868.2| PREDICTED: SEC14 cytosolic factor-like [Vitis vinifera] gi|296083523|emb|CBI23513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555773|ref|XP_003546204.1| PREDICTED: SEC14-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|351722583|ref|NP_001237505.1| polyphosphoinositide binding protein Ssh1p [Glycine max] gi|2739044|gb|AAB94598.1| polyphosphoinositide binding protein Ssh1p [Glycine max] Back     alignment and taxonomy information
>gi|356532836|ref|XP_003534976.1| PREDICTED: SEC14-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255644649|gb|ACU22827.1| unknown [Glycine max] gi|255644661|gb|ACU22833.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255647651|gb|ACU24288.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449529250|ref|XP_004171614.1| PREDICTED: LOW QUALITY PROTEIN: CRAL-TRIO domain-containing protein T23G5.2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2160892341 AT5G47730 "AT5G47730" [Arabido 0.693 0.703 0.729 2.3e-129
TAIR|locus:2012040325 AT1G55840 "AT1G55840" [Arabido 0.632 0.673 0.675 7.6e-118
UNIPROTKB|F1P060 719 SEC14L5 "Uncharacterized prote 0.627 0.301 0.315 5e-15
WB|WBGene00011962 719 T23G5.2 [Caenorhabditis elegan 0.291 0.140 0.339 1.2e-14
RGD|1564638 696 Sec14l5 "SEC14-like 5 (S. cere 0.627 0.311 0.290 1.4e-14
TAIR|locus:2049319 548 SFH3 "SEC14-like 3" [Arabidops 0.592 0.374 0.283 3.6e-14
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.592 0.370 0.301 4.8e-14
UNIPROTKB|O43304 696 SEC14L5 "SEC14-like protein 5" 0.627 0.311 0.295 7.4e-14
UNIPROTKB|F1RZ70 701 SEC14L1 "Uncharacterized prote 0.630 0.310 0.296 1.7e-13
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.592 0.370 0.283 2.5e-13
TAIR|locus:2160892 AT5G47730 "AT5G47730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 924 (330.3 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
 Identities = 175/240 (72%), Positives = 192/240 (80%)

Query:   106 SSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRP 165
             S ++    +  + LPVFA+GVGLSTFDKASVH YVQSHIQINEYRDRV+LPS S K+GRP
Sbjct:    89 SQLIGMSGYTKEGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVLLPSISKKNGRP 148

Query:   166 ITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKP 225
             ITTCVKVLDMTGLKLSALSQIKL+TIIST+DDLNYPEKTNTYY+VN PYIFSACWKVVKP
Sbjct:   149 ITTCVKVLDMTGLKLSALSQIKLVTIISTIDDLNYPEKTNTYYVVNAPYIFSACWKVVKP 208

Query:   226 LLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCXXXXXXXXXXXXNKNCFSLDHPFHQQ 285
             LLQERTRKK+ VL G GRDELLKIMDF SLPHFC            + NCFS++HPFHQQ
Sbjct:   209 LLQERTRKKVHVLSGCGRDELLKIMDFTSLPHFCRSGSSGSSHHTQSANCFSINHPFHQQ 268

Query:   286 LYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDD 345
             LYNY+K         +P KQGSFHV  PEP AE   IAKTIESELHK ENRNGL  S+DD
Sbjct:   269 LYNYVKHHYETQGQAEPAKQGSFHVGFPEPEAERCVIAKTIESELHKFENRNGLAVSIDD 328
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
TAIR|locus:2012040 AT1G55840 "AT1G55840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P060 SEC14L5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00011962 T23G5.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|1564638 Sec14l5 "SEC14-like 5 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O43304 SEC14L5 "SEC14-like protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZ70 SEC14L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VI0018
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
smart00516158 smart00516, SEC14, Domain in homologues of a S 1e-24
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 6e-21
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 5e-15
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 1e-06
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 1e-05
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 120 PVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLK 179
           PV     G       ++   ++  + + E   +        K    I     + D+ GL 
Sbjct: 21  PVLIERAGRFDLKSVTLEELLRYLVYVLEKILQ------EEKKTGGIEGFTVIFDLKGLS 74

Query: 180 LSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQ 239
           +S    + +L  I  +   +YPE+    YI+N P+ F   WK++KP L E+TR+KI+ + 
Sbjct: 75  MSNPD-LSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKIRFVG 133

Query: 240 GSGRDELLKIMDFESLPHFCRRED 263
              ++ELL+ +D E LP       
Sbjct: 134 NDSKEELLEYIDKEQLPEELGGTL 157

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.96
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.95
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.91
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.48
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 99.09
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 97.93
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 87.09
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3e-40  Score=302.92  Aligned_cols=199  Identities=25%  Similarity=0.393  Sum_probs=172.4

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHHHHHHhhhhcccccccccccchhhhhhhhhcc
Q 019113           33 GYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQH  112 (346)
Q Consensus        33 ~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~  112 (346)
                      .++|++++||||||+|||++|.+||.++|.||+++++...+    ...|+..++ ..+.+++.|+|+.            
T Consensus        46 ~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~----~~~Ev~~e~-~tGK~yi~G~D~~------------  108 (324)
T KOG1470|consen   46 WCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI----EADEVAAEL-ETGKAYILGHDKD------------  108 (324)
T ss_pred             cCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc----CHHHHHHHh-hcCcEEEecccCC------------
Confidence            46899999999999999999999999999999999976622    223433333 3578889999988            


Q ss_pred             cCCCCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHHH
Q 019113          113 CHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTII  192 (346)
Q Consensus       113 ~~D~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~~  192 (346)
                           ||||+|+++..+.....+.+.+.+..++++|...        ..++++++++++++|++|+|+++++ ++..+.+
T Consensus       109 -----gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai--------~~lp~~qe~~~~L~D~~~fs~sN~d-~~~~k~~  174 (324)
T KOG1470|consen  109 -----GRPVLYLRPRPHRQNTKTQKELERLLVYTLENAI--------LFLPPGQEQFVWLFDLTGFSMSNPD-IKFLKEL  174 (324)
T ss_pred             -----CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH--------HhCCCCcceEEEEEecccCcccCCC-cHHHHHH
Confidence                 9999999887766666678888888888888654        3445678899999999999999988 7899999


Q ss_pred             HHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcCCCChhHHhccCCCCCCCccccCCCCCccc
Q 019113          193 STVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSR  268 (346)
Q Consensus       193 ~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~  268 (346)
                      ++++|+||||||+..+++|+||+|..+|+++||||++.|++||+|..+  .+.|.+|||+++||..|    ||+..
T Consensus       175 ~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~----GG~~~  244 (324)
T KOG1470|consen  175 LHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLF----GGKLL  244 (324)
T ss_pred             HHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhh----CCCcc
Confidence            999999999999999999999999999999999999999999999875  56699999999999999    88653

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 1e-15
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 4e-15
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 8e-15
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-11
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-11
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 1e-09
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 7e-04
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 38  TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKIL------SKPIV----PTELYRAVR 87
           TL+RFL+AR  +V  A +M  +C  WR     D IL       KP++    P   ++  +
Sbjct: 54  TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDK 113
Query: 88  DSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQIN 147
           D + +            F  + + + H +  +          T ++  +   V  +  + 
Sbjct: 114 DGRPV-----------YFEELGAVNLHEMNKV----------TSEERMLKNLVWEYESVV 152
Query: 148 EYRDRVILPSASAKHGRPITTCVKVLDMTGLKLS-ALSQIKLLTIISTVDDLNYPEKTNT 206
           +YR    LP+ S   G  + T   ++D+ G+ +S A S +  +   S +    YPE+   
Sbjct: 153 QYR----LPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGK 208
Query: 207 YYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP 256
           +YI+N P+ FS  +++ KP L   T  KI +L  S + ELLK +  E+LP
Sbjct: 209 FYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 3e-61
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 2e-60
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 9e-57
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 2e-28
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 2e-25
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
 Score =  198 bits (504), Expect = 3e-61
 Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 35/261 (13%)

Query: 7   EAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQ 66
           EA+ QF++++ +         +N        TL+RFL+AR  +++ + +M ++   WR +
Sbjct: 41  EALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREE 91

Query: 67  NEIDKILSKPIVPTELYRAVRDSQL----IGMSGYSREEHYIFSSILSQHCHLLQSLPVF 122
              + I+       E     R               ++                   P++
Sbjct: 92  YGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGR-----------------PLY 134

Query: 123 AVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGL 178
              +G     K     +    +++ ++  E      +P+ S + G  I T   VLD+ G+
Sbjct: 135 FAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI 194

Query: 179 KLSALSQIK-LLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQV 237
            LS    +   +  ++ +    YPE+   +YI++ P+ FS  +K+VKP L   T  KI +
Sbjct: 195 SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFI 254

Query: 238 LQGSGRDELLKIMDFESLPHF 258
           L  S + ELLK +  E+LP  
Sbjct: 255 LGSSYKKELLKQIPIENLPVK 275
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.21
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.96
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 81.65
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=6.4e-50  Score=389.13  Aligned_cols=278  Identities=26%  Similarity=0.376  Sum_probs=236.0

Q ss_pred             CcchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHH
Q 019113            2 VTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTE   81 (346)
Q Consensus         2 ~~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~   81 (346)
                      .+.++++|+|||+++++....+        ...+|.+|+||||||+||+++|.+||+++++||+++++++++.. . +++
T Consensus         9 ~~~q~~~l~~lr~~l~~~~~~l--------~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~-~~~   78 (403)
T 1olm_A            9 SPRQKEALAKFRENVQDVLPAL--------PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-Q-PPE   78 (403)
T ss_dssp             CHHHHHHHHHHHHHHGGGGGGS--------SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-C-CCH
T ss_pred             CHHHHHHHHHHHHHHHhhccCC--------CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-C-CHH
Confidence            3567889999999999874222        15789999999999999999999999999999999999998862 2 223


Q ss_pred             HHHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCcc----chhHHHHHHHHHHHHHHHhhhcchh
Q 019113           82 LYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFD----KASVHCYVQSHIQINEYRDRVILPS  157 (346)
Q Consensus        82 ~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~  157 (346)
                      .   +++..+.+++|+|++                 ||||+++++|++|++    ..+.+++++++++++|...+. ++.
T Consensus        79 ~---~~~~~~~~~~g~Dk~-----------------GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~  137 (403)
T 1olm_A           79 V---IQQYLSGGMCGYDLD-----------------GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAH  137 (403)
T ss_dssp             H---HHHHCCBEEEEECTT-----------------SCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             H---HHHhCCceeeccCCC-----------------cCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHh
Confidence            2   344456678888888                 999999999999876    367899999999999988764 344


Q ss_pred             hhhhcCCCcceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccce
Q 019113          158 ASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKI  235 (346)
Q Consensus       158 ~~~~~~~~v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI  235 (346)
                      ++...|.+++++++|+||+|+++++++.  +++++.++.++|+|||||++++||||+|++|.++|+++||||+++|++||
T Consensus       138 ~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI  217 (403)
T 1olm_A          138 QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI  217 (403)
T ss_dssp             HHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTE
T ss_pred             hHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceE
Confidence            5556777899999999999999999864  56789999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCChhHHhccCCCCCCCccccCCCCCcccCC-CCCCCCC---CCCcchHHHHHHHhhccc-cc-cCcccccCCceE
Q 019113          236 QVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSS-ENKNCFS---LDHPFHQQLYNYIKQQSL-IS-EPIQPVKQGSFH  309 (346)
Q Consensus       236 ~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~~-~~~~c~~---~~~p~~~~~y~~i~~~~~-~~-~~~~~~~~~~~~  309 (346)
                      +|+++++.++|.++||+++||++|    ||++.++ +++.|.+   .||++|+++|  ...+.. .. ++..+.+|+++.
T Consensus       218 ~~~~~~~~~~L~~~I~~~~LP~~y----GG~~~~~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~~~~V~~g~~~~  291 (403)
T 1olm_A          218 MVLGANWKEVLLKHISPDQVPVEY----GGTMTDPDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEHSVQISRGSSHQ  291 (403)
T ss_dssp             EECCTTHHHHHTTTSCGGGSBGGG----TSSBCCTTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSEEEEECTTCEEE
T ss_pred             EEEChhHHHHHHhhcChhhCchhh----CCCcCCCCCCcccccccccCCCCCcccc--cCCCcccccceEEEEcCCCEEE
Confidence            999876678999999999999999    9999885 6888975   4899999999  655432 12 357888999999


Q ss_pred             eeCCCCC
Q 019113          310 VDLPEPA  316 (346)
Q Consensus       310 ~~~~~~~  316 (346)
                      |.+++..
T Consensus       292 v~~~v~~  298 (403)
T 1olm_A          292 VEYEILF  298 (403)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            9988764
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 346
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 3e-23
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 5e-22
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 9e-13
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 9e-13
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 2e-10
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 6e-06
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 3e-23
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 24/172 (13%)

Query: 93  GMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDK----ASVHCYVQSHIQINE 148
           GM GY  +                   PV+   +G          AS    +++ ++  E
Sbjct: 12  GMCGYDLDGC-----------------PVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 54

Query: 149 YRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNT 206
              +      + K GR + T   + D  GL L  L +  ++       + + NYPE    
Sbjct: 55  LLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKR 113

Query: 207 YYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHF 258
            ++V  P +F   + ++KP L E TRKKI VL  + ++ LLK +  + +P  
Sbjct: 114 LFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 165
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.96
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.6
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.51
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.36
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 85.21
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-39  Score=279.99  Aligned_cols=183  Identities=25%  Similarity=0.399  Sum_probs=163.4

Q ss_pred             hhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCcc----chhHHHHHHHHHHHHHHHhhhcchhhhhh
Q 019113           86 VRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFD----KASVHCYVQSHIQINEYRDRVILPSASAK  161 (346)
Q Consensus        86 l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~  161 (346)
                      ++++.+++++|+|++                 ||||+++++|++|++    ..+.+++++++++.+|...+.+ ..++.+
T Consensus         5 i~~~~p~~~~G~Dk~-----------------Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~-~~~~~~   66 (199)
T d1olma3           5 IQQYLSGGMCGYDLD-----------------GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTK   66 (199)
T ss_dssp             HHHHCCBEEEEECTT-----------------SCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHCCCccccCCCC-----------------CCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence            567789999999998                 999999999999875    3477889999999999988754 445566


Q ss_pred             cCCCcceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcC
Q 019113          162 HGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQ  239 (346)
Q Consensus       162 ~~~~v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~  239 (346)
                      .+++++++++|+||+|+++++++.  +++++.++.++|++||||++++||||+|++|+++|+++||||+++|++||+|++
T Consensus        67 ~~~~v~~~~~I~Dl~g~s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~  146 (199)
T d1olma3          67 LGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG  146 (199)
T ss_dssp             HTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred             cCCccceEEEEEECCCCchhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeC
Confidence            788999999999999999999975  578999999999999999999999999999999999999999999999999998


Q ss_pred             CCChhHHhccCCCCCCCccccCCCCCcccCC-CCCCCC---CCCCcchHHHHHHHhh
Q 019113          240 GSGRDELLKIMDFESLPHFCRREDSGSSRSS-ENKNCF---SLDHPFHQQLYNYIKQ  292 (346)
Q Consensus       240 ~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~~-~~~~c~---~~~~p~~~~~y~~i~~  292 (346)
                      +++.+.|.++|++++||++|    ||+|+++ ++++|.   ..++++|+++|  +++
T Consensus       147 ~~~~~~L~~~i~~~~lP~~y----GGt~~~~~~~~~~~~~~~~~~~~p~~~~--~~~  197 (199)
T d1olma3         147 ANWKEVLLKHISPDQVPVEY----GGTMTDPDGNPKCKSKINYGGDIPRKYY--VRD  197 (199)
T ss_dssp             TTHHHHHTTTSCGGGSBGGG----TSSBCCTTCCTTCTTTCBCCCCCCGGGC--SCS
T ss_pred             CCCHHHHHHhCCHhhCCHHh----CCCCCCCCCChhhhccCCCCCcCCHHHh--hcc
Confidence            77788999999999999999    9999885 688885   45899999998  554
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure