Citrus Sinensis ID: 019117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY
Secondary Structure (PSIPRED)
ccccEEEccccccccccccccccEEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEccEEEEEEccccEEEEEEEccEEEEEcccccEEEEcccccccccccccccEEEEEEcccccEEEEEEEEcccccEEEEEcccccEEEEEccccccEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEccccccccccEEEEEEEcccccEEEEEEEccccccccEEEEEcccEEEEEEcccccEEEEEEccccccccEEEEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEccccccccccccccccccEEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccccccccccEEEEEEEccccEEEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
martaigceplvgsltpskkrEYRVTNKlqegkrplYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSyvdedkeesfYTVSWacnvdgipflvaggiNGIIRVIDVSNEKLHKSFvghgdsineirtqplkpslvvsaskdeSVRLWNVQTGICILIFAgagghrnevlsvdfhpsdiyriascgmdntvKIWSMKEFWTYVEKsftwtdlpskfptkyvqfPVFIASVHSNYVDCNRWLGdfilsksvdneivlwepkmkeqspgegtadilqkypvpecdiWFIKFSCDFHYNaaaignreGKIFVWELQSSPPVLIARLICFSLHvkynpqsvy
Flexible Loop (DISEMBL)
martaigceplvgsltpskkreyrvtnklqegkrplYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGhgdsineirtqplkPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEpkmkeqspgegTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY
Low Complexity Region (SEG)
MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY
Disordered region (IsUnstruct)
****************************LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT*****SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE************ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKY******
Disordered Region (DISOPRED)
*A*TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQS*Y
Disordered Region (DISEMBL)
MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK*********TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY
Disordered Region (DISPRO)
*****IGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q8VZY6	379	Polycomb group protein FI	N/A	no	0.945	0.862	0.817	1e-160
Q9LT47	369	Polycomb group protein FE	yes	no	0.956	0.897	0.758	1e-159
Q8VZY7	461	Polycomb group protein FI	N/A	no	0.956	0.718	0.653	1e-131
Q8UUP2	438	Polycomb protein eed-A OS	N/A	no	0.858	0.678	0.426	4e-66
Q921E6	441	Polycomb protein EED OS=M	yes	no	0.867	0.680	0.422	7e-66
O75530	441	Polycomb protein EED OS=H	yes	no	0.867	0.680	0.422	7e-66
Q3SZ25	441	Polycomb protein EED OS=B	yes	no	0.867	0.680	0.422	8e-66
Q566T0	443	Polycomb protein eed OS=D	yes	no	0.867	0.677	0.422	1e-65
Q5ZKH3	446	Polycomb protein EED OS=G	yes	no	0.867	0.672	0.422	3e-65
Q6AZS2	438	Polycomb protein eed-B OS	N/A	no	0.858	0.678	0.423	2e-64

>sp|Q8VZY6|FIE2_MAIZE Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1

 Score =  565 bits (1455), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/328 (81%), Positives = 293/328 (89%), Gaps = 1/328 (0%)

Query: 5   AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQ 64
            +GCE   GSL PS+KREY+   K  EGKRPLYA+ FNF+D+RY++VFATVGGNRVT Y+
Sbjct: 9   GLGCEAAEGSLVPSRKREYKPCGKHTEGKRPLYAIGFNFMDARYYDVFATVGGNRVTTYR 68

Query: 65  CLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKS 123
           CLE G  A LQ+YVDEDK+ESFYT+SWA + VDG P LVA G NGIIRVI+ + EKL KS
Sbjct: 69  CLENGSFALLQAYVDEDKDESFYTLSWARDHVDGSPLLVAAGSNGIIRVINCATEKLAKS 128

Query: 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183
           FVGHGDSINEIRTQPLKPSL++SASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFH
Sbjct: 129 FVGHGDSINEIRTQPLKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFH 188

Query: 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243
           PSDI R ASCGMDNTVKIWSMKEFW YV+KS++WTDLPSKFPTKYVQFPV IA+VHSNYV
Sbjct: 189 PSDIERFASCGMDNTVKIWSMKEFWLYVDKSYSWTDLPSKFPTKYVQFPVLIAAVHSNYV 248

Query: 244 DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303
           DC RWLGDFILSKSVDNEIVLWEPK KEQSPGEG+ DILQKYPVPECDIWFIKFSCDFH+
Sbjct: 249 DCTRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIKFSCDFHF 308

Query: 304 NAAAIGNREGKIFVWELQSSPPVLIARL 331
           N  AIGNREGKI+VWE+QSSPPVLIARL
Sbjct: 309 NQLAIGNREGKIYVWEVQSSPPVLIARL 336

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility.
Zea mays (taxid: 4577)

>sp|Q9LT47|FIE_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2

 Score =  560 bits (1443), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 251/331 (75%), Positives = 296/331 (89%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           M++  +G E +VGSLTPS K+ Y+VTN++QEGK+PLYAVVFNF+D+R+F+VF T GGNR+
Sbjct: 1   MSKITLGNESIVGSLTPSNKKSYKVTNRIQEGKKPLYAVVFNFLDARFFDVFVTAGGNRI 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           T+Y CL  G I+ALQSY DEDKEESFYTVSWAC V+G P++ AGG+ GIIRVIDV++E +
Sbjct: 61  TLYNCLGDGAISALQSYADEDKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           HKS VGHGDS+NEIRTQPLKP LV++ASKDESVRLWNV+TGICILIFAGAGGHR EVLSV
Sbjct: 121 HKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYR ASCGMD T+KIWSMKEFWTYVEKSFTWTD PSKFPTK+VQFPVF AS+H+
Sbjct: 181 DFHPSDIYRFASCGMDTTIKIWSMKEFWTYVEKSFTWTDDPSKFPTKFVQFPVFTASIHT 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDCNRW GDFILSKSVDNEI+LWEP++KE SPGEG +D+L +YPVP CDIWFIKFSCD
Sbjct: 241 NYVDCNRWFGDFILSKSVDNEILLWEPQLKENSPGEGASDVLLRYPVPMCDIWFIKFSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
            H ++ AIGN+EGK++VW+L+S PPVLI +L
Sbjct: 301 LHLSSVAIGNQEGKVYVWDLKSCPPVLITKL 331

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Required to prevent the proliferation of the central cell by repressing unknown target genes before fertilization. Probably also involved in floral repression mechanism established during early plant development. Regulates the anteroposterior organization of the endosperm. Interacts with the promoter and repress the transcription of genes such as PHE1, that are paternally active and maternally silenced.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZY7|FIE1_MAIZE Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE=2 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/332 (65%), Positives = 265/332 (79%), Gaps = 1/332 (0%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           + R  +GCE + G L PS+KREY+  +K   G  P+YA+ FNFID RY++VFA    N V
Sbjct: 63  VPRQGLGCEVVEGLLVPSRKREYKPNSKYTVGNHPIYAIGFNFIDMRYYDVFAIASCNSV 122

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEK 119
            +Y+CLE G    LQ+YVDEDK+ESFYT+SW  + VD  P LVA G N IIRVI+ + EK
Sbjct: 123 IIYRCLENGGFGLLQNYVDEDKDESFYTLSWTIDQVDSSPLLVAAGSNRIIRVINCATEK 182

Query: 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179
           L KS VGHG SI+EIRT   KPSL++SASKDES+RLWNV TGICIL+FAGAGGHR++VLS
Sbjct: 183 LDKSLVGHGGSIHEIRTHASKPSLIISASKDESIRLWNVHTGICILVFAGAGGHRHDVLS 242

Query: 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239
           VDFHP+++   ASCGMDNTVKIWSMKEFW YVEKS++WT  PSKFPT+ +QFPV  A+VH
Sbjct: 243 VDFHPTEVGIFASCGMDNTVKIWSMKEFWIYVEKSYSWTGHPSKFPTRNIQFPVLTAAVH 302

Query: 240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299
           S+YVDC RWLGDFILSKSV N ++LWEPK  ++ PGEG+ D+LQKYPVP+C +WF+KFSC
Sbjct: 303 SDYVDCTRWLGDFILSKSVKNAVLLWEPKPDKRRPGEGSVDVLQKYPVPKCSLWFMKFSC 362

Query: 300 DFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           DF+ N  AIGN +G+I+VWE+QSSPPVLI RL
Sbjct: 363 DFYSNQMAIGNNKGEIYVWEVQSSPPVLIDRL 394

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility.

Zea mays (taxid: 4577)

>sp|Q8UUP2|EEDA_XENLA Polycomb protein eed-A OS=Xenopus laevis GN=eed-a PE=1 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 24/321 (7%)

Query: 23  YRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQSYVD 79
           ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQSYVD
Sbjct: 79  FKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVD 137

Query: 80  EDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138
            D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P
Sbjct: 138 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 197

Query: 139 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 196
             P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct: 198 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 254

Query: 197 NTVKIWSMKEFW--TYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCNRWL 249
           +++K+W +      T +++S+ +   PSK    F ++ + FP F    +H NYVDC RWL
Sbjct: 255 HSLKLWRINSLRMKTAIKESYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNYVDCVRWL 312

Query: 250 GDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304
           GD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF   
Sbjct: 313 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 372

Query: 305 AAAIGNREGKIFVWELQSSPP 325
             A+GN+ GK++VW+L++  P
Sbjct: 373 MLALGNQVGKLYVWDLEAEDP 393

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Xenopus laevis (taxid: 8355)

>sp|Q921E6|EED_MOUSE Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1

 Score =  251 bits (640), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)

Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 79  KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 137

Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 373 WQKMLALGNQVGKLYVWDLEVEDP 396

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems (By similarity). Genes repressed by the PRC2/EED-EZH2 complex include HOXA7, HOXB6 and HOXC8. Plays a role in X chromosome inactivation (XCI), in which one of the two X chromosomes in female mammals is transcriptionally silenced to equalize X-linked gene dosage with XY males. Required for stable maintenance of XCI in both embryonic and extraembryonic tissues. May prevent transcriptional activation of facultative heterochromatin during differentiation. Required for development of secondary trophoblast giant cells during placental development. May regulate hippocampal synaptic plasticity in the developing brain.

Mus musculus (taxid: 10090)

>sp|O75530|EED_HUMAN Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2

 Score =  251 bits (640), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)

Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 79  KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 137

Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 373 WQKMLALGNQVGKLYVWDLEVEDP 396

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems. Genes repressed by the PRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1 and CDKN2A.

Homo sapiens (taxid: 9606)

>sp|Q3SZ25|EED_BOVIN Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1

 Score =  251 bits (640), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)

Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 79  KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 137

Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 373 WQKMLALGNQVGKLYVWDLEVEDP 396

Polycomb group (PcG) protein (By similarity). Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems.

Bos taurus (taxid: 9913)

>sp|Q566T0|EED_DANRE Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 196/324 (60%), Gaps = 24/324 (7%)

Query: 20  KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 81  KYSFKCVNSLKEDHGQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 139

Query: 77  YVDEDKEESFYTVSWACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  +     P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 140 YVDADADENFYTCAWTFDCSSSHPLLAVAGSRGIIRIINHITMQCVKHYVGHGNAINELK 199

Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS DF   D+   +I SC
Sbjct: 200 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADF---DLLGEKIMSC 256

Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  +     +  S+ +   PSK    F ++ + FP F    +H NYVDC 
Sbjct: 257 GMDHSLKLWRLDSERLQRAIRGSYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNYVDCV 314

Query: 247 RWLGDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P   E       P E    IL ++   +CDIW+++FS DF
Sbjct: 315 RWLGDLILSKSCENAIVCWKPGRMEDDIDRIKPNESNVTILGRFDYSQCDIWYMRFSMDF 374

Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 375 WQKMLALGNQVGKLYVWDLEVEDP 398

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Danio rerio (taxid: 7955)

>sp|Q5ZKH3|EED_CHICK Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)

Query: 20  KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 84  KYSFKCVNSLKEDHGQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 142

Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 143 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 202

Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 203 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 259

Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 260 GMDHSLKLWRINSKRMINAIKESYEYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 317

Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 318 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 377

Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 378 WQKMLALGNQVGKLYVWDLEIEDP 401

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Gallus gallus (taxid: 9031)

>sp|Q6AZS2|EEDB_XENLA Polycomb protein eed-B OS=Xenopus laevis GN=eed-b PE=1 SV=2

 Score =  246 bits (628), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/321 (42%), Positives = 200/321 (62%), Gaps = 24/321 (7%)

Query: 23  YRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQSYVD 79
           ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQSYVD
Sbjct: 79  FKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVD 137

Query: 80  EDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138
            D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P
Sbjct: 138 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 197

Query: 139 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 196
             P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct: 198 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 254

Query: 197 NTVKIWSMKEFW--TYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCNRWL 249
           +++K+W +      T +++S+ +   P+K    F ++ V FP F    +H NYVDC RWL
Sbjct: 255 HSLKLWRINSLRMKTAIKESYDYN--PNKTNRPFVSQKVHFPDFSTRDIHRNYVDCVRWL 312

Query: 250 GDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304
           GD ILSKS +N IV W+P KM++        E    IL ++   +CDIW+++FS DF   
Sbjct: 313 GDLILSKSCENAIVCWKPGKMEDDIEKIKASESNVTILGRFDYSQCDIWYMRFSMDFWQK 372

Query: 305 AAAIGNREGKIFVWELQSSPP 325
             A+GN+ GK++VW+L+   P
Sbjct: 373 MLALGNQVGKLYVWDLEVEDP 393

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). May play a role in neural induction.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
166203411	370	fertilization-independent endosperm prot	0.956	0.894	0.930	0.0
224126301	371	polycomb group protein [Populus trichoca	0.956	0.892	0.927	0.0
409127977	370	fertilization independent endosperm 1 pr	0.956	0.894	0.924	0.0
449468502	370	PREDICTED: polycomb group protein FIE2-l	0.956	0.894	0.927	0.0
196122481	371	fertilization-independent endosperm prot	0.956	0.892	0.912	0.0
27465059	372	fertilization independent endosperm deve	0.956	0.889	0.906	0.0
197092477	370	fertilization-independent endosperm [Hie	0.956	0.894	0.888	1e-179
197092481	370	fertilization-independent endosperm [Hie	0.956	0.894	0.885	1e-178
77997759	372	fertilization-independent endosperm prot	0.953	0.887	0.881	1e-177
350536073	372	fertilization-independent endosperm prot	0.953	0.887	0.881	1e-177

>gi|166203411|gb|ABY84674.1| fertilization-independent endosperm protein [Nicotiana tabacum]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/331 (93%), Positives = 320/331 (96%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MAR  IGCEP+VGSLTPSKK+EYRVTN+LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV
Sbjct: 1   MARIPIGCEPVVGSLTPSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCLEGGVIA LQSY+DEDK+ESFYTVSWACN+DG PF+VAGGINGI+RVID  NEK+
Sbjct: 61  TVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACNIDGSPFIVAGGINGILRVIDAGNEKI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           HKSFVGHGDSINEIRTQ LKPSLVVSASKDESVRLWNV TGICILIFAGAGGHRNEVLSV
Sbjct: 121 HKSFVGHGDSINEIRTQVLKPSLVVSASKDESVRLWNVHTGICILIFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+FIASVHS
Sbjct: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPIFIASVHS 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCD
Sbjct: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           FHY AAAIGNREGKIFVWELQ+SPP +IARL
Sbjct: 301 FHYKAAAIGNREGKIFVWELQTSPPAMIARL 331

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126301|ref|XP_002319805.1| polycomb group protein [Populus trichocarpa] gi|222858181|gb|EEE95728.1| polycomb group protein [Populus trichocarpa]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/331 (92%), Positives = 324/331 (97%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MA+ A+GCEP+VGSLTPSKKREYR+TN+LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV
Sbjct: 1   MAKIALGCEPVVGSLTPSKKREYRLTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCL+ GVIA LQSYVDEDK+ESFYTVSWACN+DG PF+VAGGINGI+RVI+ SNE++
Sbjct: 61  TVYQCLDEGVIAVLQSYVDEDKDESFYTVSWACNIDGAPFVVAGGINGIMRVINASNEEI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           HKSFVGHGDSINEIRTQPLKPSLV+SASKDESVRLWNV TGICILIFAGAGGHRNEVLSV
Sbjct: 121 HKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD PSKFPTKYVQFPVFIASVHS
Sbjct: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDCPSKFPTKYVQFPVFIASVHS 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDCNRWLGDF+LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD
Sbjct: 241 NYVDCNRWLGDFMLSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           F+YNAAAIGNREGKI+VWELQSSPPVLIARL
Sbjct: 301 FNYNAAAIGNREGKIYVWELQSSPPVLIARL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409127977|gb|AFV15391.1| fertilization independent endosperm 1 protein [Nicotiana benthamiana]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/331 (92%), Positives = 319/331 (96%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MAR  IGCEP+VGSLTPSKK++YRVTN+LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV
Sbjct: 1   MARIPIGCEPVVGSLTPSKKKDYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCLEGGVIA LQSY+DEDK+ESFYTVSWACN+DG PF+VAGGINGI+RVID  NEK+
Sbjct: 61  TVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACNIDGSPFIVAGGINGILRVIDAGNEKI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           HKSFVGHGDSINEIRTQ LKPSLVVSASKDESVRLWNV TGICILIFAGAGGHRNEVLSV
Sbjct: 121 HKSFVGHGDSINEIRTQVLKPSLVVSASKDESVRLWNVHTGICILIFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+FIASVHS
Sbjct: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPIFIASVHS 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDC RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCD
Sbjct: 241 NYVDCTRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           FHY AAAIGNREGKIFVWELQ+SPP +IARL
Sbjct: 301 FHYKAAAIGNREGKIFVWELQTSPPAMIARL 331

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468502|ref|XP_004151960.1| PREDICTED: polycomb group protein FIE2-like [Cucumis sativus] gi|449531818|ref|XP_004172882.1| PREDICTED: polycomb group protein FIE2-like [Cucumis sativus]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/331 (92%), Positives = 321/331 (96%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MA+ A+G EP+VG LTPSKK+EYRVTN+LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR+
Sbjct: 1   MAKYALGSEPVVGLLTPSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRI 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCLEGGVIA LQSYVDEDK+ESFYTVSWA NVDG PF+VAGGINGIIRVID  +EK+
Sbjct: 61  TVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAYNVDGSPFVVAGGINGIIRVIDAGSEKI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           +KSFVGHGDSINEIRTQPLKPSLV+SASKDESVRLWNV TGICIL+FAGAGGHRNEVLSV
Sbjct: 121 YKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILVFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS
Sbjct: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDC+RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCD
Sbjct: 241 NYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           FHYNAAAIGNREGKIFVWELQSSPPVLIARL
Sbjct: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196122481|gb|ACG69840.1| fertilization-independent endosperm protein [Malus x domestica]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/331 (91%), Positives = 319/331 (96%)

Query: 2   ARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVT 61
           A+ A+G EP+VGSL PSKK+EYRVTN+LQEGKRPLYA+VFNFIDSRYFNVFATVGGNRVT
Sbjct: 3   AKFALGSEPVVGSLAPSKKKEYRVTNRLQEGKRPLYAIVFNFIDSRYFNVFATVGGNRVT 62

Query: 62  VYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH 121
           VYQCLEGGVIA LQSY+DEDK+ESFYTVSWACN DG P LVAGGINGI+RVID  +EK+ 
Sbjct: 63  VYQCLEGGVIAVLQSYIDEDKDESFYTVSWACNSDGSPLLVAGGINGIMRVIDCGSEKID 122

Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
           KSFVGHGDSINEIRTQPLK SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD
Sbjct: 123 KSFVGHGDSINEIRTQPLKSSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 182

Query: 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241
           FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS+H+N
Sbjct: 183 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASIHTN 242

Query: 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301
           YVDCNRWLGDF+LSKSVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCDF
Sbjct: 243 YVDCNRWLGDFLLSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDF 302

Query: 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLI 332
           HYNAAAIGNREGKIF+WELQSSPPVLIA+L+
Sbjct: 303 HYNAAAIGNREGKIFIWELQSSPPVLIAKLL 333

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27465059|gb|AAN85568.1| fertilization independent endosperm development protein [Eucalyptus grandis]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/331 (90%), Positives = 317/331 (95%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MA+ A GCEP+ G+LTPSKKREYRVTN+LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV
Sbjct: 1   MAKIAPGCEPVAGTLTPSKKREYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCLEGGVIA LQSY+DEDK+ESFYTVSWACN+D  PF+VAGGINGIIRVID  NEK+
Sbjct: 61  TVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACNIDRTPFVVAGGINGIIRVIDAGNEKI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           H+SFVGHGDSINEIRTQPL PSL+VSASKDESVRLWNV TGICILIFAGAGGHRNEVLSV
Sbjct: 121 HRSFVGHGDSINEIRTQPLNPSLIVSASKDESVRLWNVHTGICILIFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSD YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA VHS
Sbjct: 181 DFHPSDKYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAPVHS 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDCNRWLGDF+LSKSVDNEIVLWEPKMKEQSPGEG+ DILQKYPVPECDIWFIKFSCD
Sbjct: 241 NYVDCNRWLGDFVLSKSVDNEIVLWEPKMKEQSPGEGSVDILQKYPVPECDIWFIKFSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           FHY++ AIGNREGKI+VWELQSSPPVLIA+L
Sbjct: 301 FHYHSIAIGNREGKIYVWELQSSPPVLIAKL 331

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197092477|gb|ABZ85627.2| fertilization-independent endosperm [Hieracium pilosella]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 294/331 (88%), Positives = 314/331 (94%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MA+  +GCEP++GSLTPSKKR+YRVTN+LQEGKRP+YAVVFNFIDSRY+NVFATVGGNRV
Sbjct: 1   MAKITLGCEPVIGSLTPSKKRDYRVTNRLQEGKRPIYAVVFNFIDSRYYNVFATVGGNRV 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCLEGGVIA LQSY+DEDK+ESFYTVSWAC+ DG P LVAGGINGIIRVID  NEK+
Sbjct: 61  TVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNEKI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           HKSFVGHGDS+NEIRTQ L+PSLV+SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV
Sbjct: 121 HKSFVGHGDSVNEIRTQALRPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE+SFTW   PS+FPTKYVQFPV IAS+H+
Sbjct: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGSPSQFPTKYVQFPVLIASIHT 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDCNRWLGDFILSKSVDNE VLWEPKMKEQSPGEGT DILQKYPVPECDIWFIK SCD
Sbjct: 241 NYVDCNRWLGDFILSKSVDNEFVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKLSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           FHYNAAAIGNREGKIFVWELQ+SPP LIARL
Sbjct: 301 FHYNAAAIGNREGKIFVWELQTSPPSLIARL 331

Source: Hieracium pilosella

Species: Hieracium pilosella

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197092481|gb|ABZ85630.2| fertilization-independent endosperm [Hieracium piloselloides]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 293/331 (88%), Positives = 314/331 (94%)

Query: 1   MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
           MA+  +GCEP++GSLTPSKKR+YRVTN+LQEGKRP+YAVVFNFIDSRY+NVFATVGGNRV
Sbjct: 1   MAKITLGCEPVIGSLTPSKKRDYRVTNRLQEGKRPIYAVVFNFIDSRYYNVFATVGGNRV 60

Query: 61  TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
           TVYQCLEGGVIA LQSY+DEDK+ESFYTVSWAC+ DG P LVAGGINGIIRVID  NEK+
Sbjct: 61  TVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNEKI 120

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
           HKSFVGHGDS+NEIRTQ L+PSLV+SASKDESVRLWNV+TGICILIFAGAGGHRNEVLSV
Sbjct: 121 HKSFVGHGDSVNEIRTQALRPSLVLSASKDESVRLWNVETGICILIFAGAGGHRNEVLSV 180

Query: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
           DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE+SFTW   PS+FPTKYVQFPV IAS+H+
Sbjct: 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGSPSQFPTKYVQFPVLIASIHT 240

Query: 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
           NYVDCNRWLGDFILSKSVDNE VLWEPKMKEQSPGEGT DILQKYPVPECDIWFIK SCD
Sbjct: 241 NYVDCNRWLGDFILSKSVDNEFVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKLSCD 300

Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           FHYNAAAIGNREGKIFVWELQ+SPP LIARL
Sbjct: 301 FHYNAAAIGNREGKIFVWELQTSPPSLIARL 331

Source: Hieracium piloselloides

Species: Hieracium piloselloides

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77997759|gb|ABB16357.1| fertilization-independent endosperm protein [Solanum tuberosum]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 291/330 (88%), Positives = 313/330 (94%)

Query: 2   ARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVT 61
           AR  +GCEP+VGSLTPS+K+EYRVTN+LQEGKRPLY VVFNFIDSRYFNVFATVGGNRVT
Sbjct: 3   ARVPLGCEPVVGSLTPSRKKEYRVTNRLQEGKRPLYGVVFNFIDSRYFNVFATVGGNRVT 62

Query: 62  VYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH 121
           VYQCLEGGVIA LQSY+DEDK+ESFYTVSWACN+DG PFLVAGGING+IRVID   EK+H
Sbjct: 63  VYQCLEGGVIAVLQSYIDEDKDESFYTVSWACNIDGSPFLVAGGINGVIRVIDAGKEKIH 122

Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
           KSFVGHGDS+NEIRTQPLKPSLV+SASKDESVRLWNV TGICIL+FAGAGGHRNEVLSVD
Sbjct: 123 KSFVGHGDSVNEIRTQPLKPSLVLSASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVD 182

Query: 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241
           FHP+DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+ IASVH+N
Sbjct: 183 FHPTDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPLLIASVHNN 242

Query: 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301
           YVDCNRWLGDFILSKSVDNEI+LWEPKMKEQS GEGT D+LQKYPVPECDIWFIK S D+
Sbjct: 243 YVDCNRWLGDFILSKSVDNEILLWEPKMKEQSAGEGTGDVLQKYPVPECDIWFIKLSFDY 302

Query: 302 HYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           HY  AAIGNREGKIFVWE+Q+SPP LIA+L
Sbjct: 303 HYKTAAIGNREGKIFVWEVQTSPPTLIAKL 332

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536073|ref|NP_001234484.1| fertilization-independent endosperm protein [Solanum lycopersicum] gi|166203415|gb|ABY84676.1| fertilization-independent endosperm protein [Solanum lycopersicum]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 291/330 (88%), Positives = 314/330 (95%)

Query: 2   ARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVT 61
           AR  +GCEP+VGSLTPS+K+EYRVTN+LQEGKRPLY VVFNFIDSRYFNVFATVGGNRVT
Sbjct: 3   ARVPLGCEPVVGSLTPSRKKEYRVTNRLQEGKRPLYGVVFNFIDSRYFNVFATVGGNRVT 62

Query: 62  VYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH 121
           VYQCLEGGVIA LQSY+DEDK+ESFYTVSWACN+DG PFLVAGGING+IRVID   EKLH
Sbjct: 63  VYQCLEGGVIAVLQSYIDEDKDESFYTVSWACNIDGSPFLVAGGINGVIRVIDAGKEKLH 122

Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
           KSFVGHGDS+NEIRT+PLKPSLV+SASKDESVRLWNV TGICIL+FAGAGGHRNEVLSVD
Sbjct: 123 KSFVGHGDSVNEIRTRPLKPSLVLSASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVD 182

Query: 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241
           FHP+DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+ IASVH+N
Sbjct: 183 FHPTDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPLLIASVHNN 242

Query: 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301
           YVDCNRWLGDFILSKSVDNEI+LWEPKMKEQS GEGT+D+LQKYPVPECDIWFIK S D+
Sbjct: 243 YVDCNRWLGDFILSKSVDNEILLWEPKMKEQSAGEGTSDVLQKYPVPECDIWFIKLSFDY 302

Query: 302 HYNAAAIGNREGKIFVWELQSSPPVLIARL 331
           HY  AAIGNREGKIFVWE+Q+SPP LIA+L
Sbjct: 303 HYKTAAIGNREGKIFVWEVQTSPPTLIAKL 332

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2091876	369	FIE "AT3G20740" [Arabidopsis t	0.956	0.897	0.758	2.4e-147
UNIPROTKB|Q8UUP2	438	eed-a "Polycomb protein eed-A"	0.872	0.689	0.429	5.2e-65
UNIPROTKB|Q3SZ25	441	EED "Polycomb protein EED" [Bo	0.872	0.684	0.426	1.1e-64
UNIPROTKB|F1PP86	441	EED "Uncharacterized protein"	0.872	0.684	0.426	1.1e-64
UNIPROTKB|O75530	441	EED "Polycomb protein EED" [Ho	0.872	0.684	0.426	1.1e-64
MGI|MGI:95286	441	Eed "embryonic ectoderm develo	0.872	0.684	0.426	1.1e-64
RGD|1309782	500	Eed "embryonic ectoderm develo	0.872	0.604	0.426	1.1e-64
UNIPROTKB|F1P0V7	464	EED "Polycomb protein EED" [Ga	0.872	0.650	0.426	2.3e-64
UNIPROTKB|Q5ZKH3	446	EED "Polycomb protein EED" [Ga	0.872	0.677	0.426	2.3e-64
ZFIN|ZDB-GENE-050417-287	443	eed "embryonic ectoderm develo	0.872	0.681	0.426	4.7e-64

TAIR|locus:2091876 FIE "AT3G20740" [Arabidopsis thaliana (taxid:3702)]

 Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
 Identities = 251/331 (75%), Positives = 296/331 (89%)

Query:     1 MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRV 60
             M++  +G E +VGSLTPS K+ Y+VTN++QEGK+PLYAVVFNF+D+R+F+VF T GGNR+
Sbjct:     1 MSKITLGNESIVGSLTPSNKKSYKVTNRIQEGKKPLYAVVFNFLDARFFDVFVTAGGNRI 60

Query:    61 TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120
             T+Y CL  G I+ALQSY DEDKEESFYTVSWAC V+G P++ AGG+ GIIRVIDV++E +
Sbjct:    61 TLYNCLGDGAISALQSYADEDKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETI 120

Query:   121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
             HKS VGHGDS+NEIRTQPLKP LV++ASKDESVRLWNV+TGICILIFAGAGGHR EVLSV
Sbjct:   121 HKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSV 180

Query:   181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
             DFHPSDIYR ASCGMD T+KIWSMKEFWTYVEKSFTWTD PSKFPTK+VQFPVF AS+H+
Sbjct:   181 DFHPSDIYRFASCGMDTTIKIWSMKEFWTYVEKSFTWTDDPSKFPTKFVQFPVFTASIHT 240

Query:   241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
             NYVDCNRW GDFILSKSVDNEI+LWEP++KE SPGEG +D+L +YPVP CDIWFIKFSCD
Sbjct:   241 NYVDCNRWFGDFILSKSVDNEILLWEPQLKENSPGEGASDVLLRYPVPMCDIWFIKFSCD 300

Query:   301 FHYNAAAIGNREGKIFVWELQSSPPVLIARL 331
              H ++ AIGN+EGK++VW+L+S PPVLI +L
Sbjct:   301 LHLSSVAIGNQEGKVYVWDLKSCPPVLITKL 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:2000014 "regulation of endosperm development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000003 "reproduction" evidence=IMP

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP

GO:0016571 "histone methylation" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0010048 "vernalization response" evidence=RCA

UNIPROTKB|Q8UUP2 eed-a "Polycomb protein eed-A" [Xenopus laevis (taxid:8355)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 141/328 (42%), Positives = 206/328 (62%)

Query:    18 SKKREY--RVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    72 SKKCKYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHPQGDIR 130

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   131 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 190

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   191 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 247

Query:   190 IASCGMDNTVKIWSMKEFW--TYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +      T +++S+ +   PSK    F ++ + FP F    +H NY
Sbjct:   248 IMSCGMDHSLKLWRINSLRMKTAIKESYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNY 305

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   306 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 365

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L++  P
Sbjct:   366 SMDFWQKMLALGNQVGKLYVWDLEAEDP 393

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q3SZ25 EED "Polycomb protein EED" [Bos taurus (taxid:9913)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    75 SKKCKYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 133

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   134 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 193

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   194 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 250

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   251 IMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 308

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   309 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 368

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   369 SMDFWQKMLALGNQVGKLYVWDLEVEDP 396

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0045120 "pronucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PP86 EED "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    75 SKKCKYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 133

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   134 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 193

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   194 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 250

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   251 IMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 308

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   309 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 368

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   369 SMDFWQKMLALGNQVGKLYVWDLEVEDP 396

GO:0045120 "pronucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

UNIPROTKB|O75530 EED "Polycomb protein EED" [Homo sapiens (taxid:9606)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    75 SKKCKYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 133

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   134 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 193

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   194 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 250

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   251 IMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 308

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   309 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 368

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   369 SMDFWQKMLALGNQVGKLYVWDLEVEDP 396

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

MGI|MGI:95286 Eed "embryonic ectoderm development" [Mus musculus (taxid:10090)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    75 SKKCKYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 133

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   134 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 193

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   194 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 250

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   251 IMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 308

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   309 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 368

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   369 SMDFWQKMLALGNQVGKLYVWDLEVEDP 396

GO:0001739 "sex chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IMP

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042054 "histone methyltransferase activity" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0045120 "pronucleus" evidence=IDA

GO:0061087 "positive regulation of histone H3-K27 methylation" evidence=IMP

RGD|1309782 Eed "embryonic ectoderm development" [Rattus norvegicus (taxid:10116)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:   134 SKKCKYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 192

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   193 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 252

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   253 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 309

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   310 IMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 367

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   368 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 427

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   428 SMDFWQKMLALGNQVGKLYVWDLEVEDP 455

GO:0001739 "sex chromatin" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA;ISO

GO:0016571 "histone methylation" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042054 "histone methyltransferase activity" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045120 "pronucleus" evidence=IEA;ISO

GO:0061087 "positive regulation of histone H3-K27 methylation" evidence=ISO

UNIPROTKB|F1P0V7 EED "Polycomb protein EED" [Gallus gallus (taxid:9031)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEGK-RPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    98 SKKCKYSFKCVNSLKEDHGQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 156

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   157 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 216

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   217 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 273

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   274 IMSCGMDHSLKLWRINSKRMINAIKESYEYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 331

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   332 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 391

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   392 SMDFWQKMLALGNQVGKLYVWDLEIEDP 419

GO:0001739 "sex chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

UNIPROTKB|Q5ZKH3 EED "Polycomb protein EED" [Gallus gallus (taxid:9031)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 140/328 (42%), Positives = 205/328 (62%)

Query:    18 SKKREY--RVTNKLQEGK-RPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    80 SKKCKYSFKCVNSLKEDHGQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 138

Query:    73 ALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   139 LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 198

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +
Sbjct:   199 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEK 255

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NY
Sbjct:   256 IMSCGMDHSLKLWRINSKRMINAIKESYEYN--PNKTNRPFISQKIHFPDFSTRDIHRNY 313

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++F
Sbjct:   314 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 373

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   374 SMDFWQKMLALGNQVGKLYVWDLEIEDP 401

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=ISS

ZFIN|ZDB-GENE-050417-287 eed "embryonic ectoderm development" [Danio rerio (taxid:7955)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 140/328 (42%), Positives = 202/328 (61%)

Query:    18 SKKREY--RVTNKLQEGK-RPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIA 72
             SKK +Y  +  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I 
Sbjct:    77 SKKCKYSFKCVNSLKEDHGQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIR 135

Query:    73 ALQSYVDEDKEESFYTVSWACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI 131
              LQSYVD D +E+FYT +W  +     P L   G  GIIR+I+    +  K +VGHG++I
Sbjct:   136 LLQSYVDADADENFYTCAWTFDCSSSHPLLAVAGSRGIIRIINHITMQCVKHYVGHGNAI 195

Query:   132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--R 189
             NE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS DF   D+   +
Sbjct:   196 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADF---DLLGEK 252

Query:   190 IASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNY 242
             I SCGMD+++K+W +  +     +  S+ +   PSK    F ++ + FP F    +H NY
Sbjct:   253 IMSCGMDHSLKLWRLDSERLQRAIRGSYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNY 310

Query:   243 VDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKF 297
             VDC RWLGD ILSKS +N IV W+P +M++      P E    IL ++   +CDIW+++F
Sbjct:   311 VDCVRWLGDLILSKSCENAIVCWKPGRMEDDIDRIKPNESNVTILGRFDYSQCDIWYMRF 370

Query:   298 SCDFHYNAAAIGNREGKIFVWELQSSPP 325
             S DF     A+GN+ GK++VW+L+   P
Sbjct:   371 SMDFWQKMLALGNQVGKLYVWDLEVEDP 398

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT47	FIE_ARATH	No assigned EC number	0.7583	0.9566	0.8970	yes	no
Q8VZY6	FIE2_MAIZE	No assigned EC number	0.8170	0.9450	0.8627	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PGE901	polycomb group protein (371 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	SDG913	SubName- Full=Putative uncharacterized protein; (812 aa)					•		•		0.613
	RBL901	SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruit [...] (965 aa)					•		•		0.561
	SDG909	SET domain protein (852 aa)					•		•		0.529
	SDG910	SET domain protein (892 aa)					•		•		0.449
	SDG916	SET domain protein (917 aa)					•		•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-09
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 99  PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
             L  G  +G I+V D+   +L ++  GH   + ++        L  S S D+++RLW++
Sbjct: 22  KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL-ASGSSDKTIRLWDL 80

Query: 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218
           +TG C+       GH + V SV F P     ++S   D T+K+W ++      +   T  
Sbjct: 81  ETGECVRTLT---GHTSYVSSVAFSPDGRI-LSSSSRDKTIKVWDVETG----KCLTTLR 132

Query: 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILSKSVDNEIVLWEPKMKEQSPGE 276
                               H+++V+   +  D  F+ S S D  I LW+ +        
Sbjct: 133 G-------------------HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-------- 165

Query: 277 GTADILQKYPVPECDIWFIKFSCD-FHYNAAAIGNREGKIFVWELQS 322
            T   +        ++  + FS D          + +G I +W+L +
Sbjct: 166 -TGKCVATLTGHTGEVNSVAFSPDGEKL---LSSSSDGTIKLWDLST 208

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 41/225 (18%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +L +G  +  IR+ D+   +  ++  GH   ++ +   P    ++ S+S+D+++++W+V+
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVE 123

Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219
           TG C+       GH + V SV F P   + +AS   D T+K+W ++        + T   
Sbjct: 124 TGKCLTTL---RGHTDWVNSVAFSPDGTF-VASSSQDGTIKLWDLRTG--KCVATLT--- 174

Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILSKSVDNEIVLWEPKMKEQSPGEG 277
                              H+  V+   +  D   +LS S D  I LW+    +      
Sbjct: 175 ------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----- 211

Query: 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322
               L      E  +  + FS D  Y  A+ G+ +G I VW+L++
Sbjct: 212 ----LGTLRGHENGVNSVAFSPD-GYLLAS-GSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 31/184 (16%)

Query: 90  SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK 149
           S A + DG   L +   +  I+V DV   K   +  GH D +N +   P   + V S+S+
Sbjct: 98  SVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQ 155

Query: 150 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209
           D +++LW+++TG C+    G   H  EV SV F P D  ++ S   D T+K+W +     
Sbjct: 156 DGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267
               +                        H N V+   +   G  + S S D  I +W+ 
Sbjct: 212 L--GTLR---------------------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248

Query: 268 KMKE 271
           +  E
Sbjct: 249 RTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
           L++   +G I++ D+S  K   +  GH + +N +   P    L+ S S+D ++R+W+++T
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT 250

Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
           G C+   +   GH N V S+ + P D  R+AS   D T++IW 
Sbjct: 251 GECVQTLS---GHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 30/169 (17%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           F+ +   +G I++ D+   K   +  GH   +N +   P    L+ S+S D +++LW++ 
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLS 207

Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219
           TG C+       GH N V SV F P     +AS   D T+++W ++          T   
Sbjct: 208 TGKCLGTLR---GHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLR----------TGE- 252

Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILSKSVDNEIVLWE 266
                        V   S H+N V    W  D   + S S D  I +W+
Sbjct: 253 ------------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 41/209 (19%)

Query: 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179
           L ++  GH   +  +   P    L+ + S D ++++W+++TG  +       GH   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK---GHTGPVRD 56

Query: 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239
           V       Y +AS   D T+++W ++      E   T T                    H
Sbjct: 57  VAASADGTY-LASGSSDKTIRLWDLETG----ECVRTLTG-------------------H 92

Query: 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297
           ++YV    +   G  + S S D  I +W+ +         T   L         +  + F
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---------TGKCLTTLRGHTDWVNSVAF 143

Query: 298 SCDFHYNAAAIGNREGKIFVWELQSSPPV 326
           S D  +   A  +++G I +W+L++   V
Sbjct: 144 SPDGTF--VASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.0 bits (175), Expect = 6e-14
 Identities = 59/316 (18%), Positives = 116/316 (36%), Gaps = 42/316 (13%)

Query: 33  KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA 92
              +  +  +  D     + ++     V ++     G          E   ES  +++++
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK----LIRTLEGHSESVTSLAFS 164

Query: 93  CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES 152
              DG        ++G I++ D+   K   +  GH D ++ +   P    L+ S S D +
Sbjct: 165 P--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222

Query: 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE 212
           +RLW++ TG  +       GH + V+S  F P D   +AS   D T+++W ++   +   
Sbjct: 223 IRLWDLSTGKLLRST--LSGHSDSVVSS-FSP-DGSLLASGSSDGTIRLWDLRSSSS--- 275

Query: 213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILSKSVDNEIVLWEPKMK 270
                               +   S HS+ V    +  D   + S S D  + LW+ +  
Sbjct: 276 -------------------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330
           +                 E  +  + FS D     +   + +G I +W+L++  P+    
Sbjct: 317 KLLSSLTLKGH-------EGPVSSLSFSPDGSLLVSGGSD-DGTIRLWDLRTGKPLKTLE 368

Query: 331 LICFSLHVKYNPQSVY 346
                L V ++P    
Sbjct: 369 GHSNVLSVSFSPDGRV 384

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 92  ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE 151
           + + DG   +  G  +G IR+ D+   K  K+  GH  ++  +   P    +V S S D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392

Query: 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
           +VRLW++ TG  +       GH + V S+DF P     +AS   DNT+++W +K
Sbjct: 393 TVRLWDLSTGSLLRNL---DGHTSRVTSLDFSPDGKS-LASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 20/121 (16%)

Query: 98  IPFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVR 154
           +P+ V GG  G+I  I + N+      +   GH  SI +++  P    ++ S S+D ++R
Sbjct: 43  VPWEVEGG--GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIR 100

Query: 155 LWN----------VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
           +W           ++   CIL      GH+ ++  +D++P + Y + S G D+ V IW +
Sbjct: 101 VWEIPHNDESVKEIKDPQCIL-----KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Query: 205 K 205
           +
Sbjct: 156 E 156

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
           GH   V SV F P     +AS   D TV++W 
Sbjct: 9   GHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 50  NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109
            + ++     + ++    G  +  L+       E    +V++  + DG   L +G  +G 
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRG-----HENGVNSVAF--SPDGY-LLASGSEDGT 242

Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157
           IRV D+   +  ++  GH +S+  +   P    L  S S D ++R+W+
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
           +G  +    G   H   V SV F P     +AS   D T+K+W 
Sbjct: 1   SGELLKTLKG---HTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
            + +G  +G +R+ D+S   L ++  GH   +  +   P     + S S D ++RLW+++
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLK 442

Query: 160 TGICILIFA 168
           T +  + F+
Sbjct: 443 TSLKSVSFS 451

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GI---CILIFAGAGGHRNEVLSV 180
           +G    I ++   P  P  + +AS+D ++  W +   G+            GH  +V  V
Sbjct: 72  LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV 131

Query: 181 DFHPSDIYRIASCGMDNTVKIW 202
            FHPS +  +AS G D  V +W
Sbjct: 132 SFHPSAMNVLASAGADMVVNVW 153

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1334	559	consensus WD40 repeat protein [General function pr	99.84
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
KOG4547	541	consensus WD40 repeat-containing protein [General	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
PRK01029	428	tolB translocation protein TolB; Provisional	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.43
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.4
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.35
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.29
KOG2314	698	consensus Translation initiation factor 3, subunit	99.29
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
PRK01029	428	tolB translocation protein TolB; Provisional	99.24
KOG2314	698	consensus Translation initiation factor 3, subunit	99.21
KOG2695	425	consensus WD40 repeat protein [General function pr	99.21
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.17
COG4946	668	Uncharacterized protein related to the periplasmic	99.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.12
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
KOG2695	425	consensus WD40 repeat protein [General function pr	99.09
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.04
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.04
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.96
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.91
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.89
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
PRK04043	419	tolB translocation protein TolB; Provisional	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.78
PRK04043	419	tolB translocation protein TolB; Provisional	98.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.73
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.69
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.69
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.66
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.54
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.48
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.42
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.41
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.41
KOG3621	726	consensus WD40 repeat-containing protein [General	98.4
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.4
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.31
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.29
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.27
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.24
KOG3621	726	consensus WD40 repeat-containing protein [General	98.22
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.18
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.17
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.13
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.09
PRK02888	635	nitrous-oxide reductase; Validated	98.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.0
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.98
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.87
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.86
PRK02888	635	nitrous-oxide reductase; Validated	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.75
KOG2444	238	consensus WD40 repeat protein [General function pr	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.69
PHA02713	557	hypothetical protein; Provisional	97.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.62
COG3391	381	Uncharacterized conserved protein [Function unknow	97.51
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.49
KOG2395	644	consensus Protein involved in vacuole import and d	97.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.41
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.4
PHA02713	557	hypothetical protein; Provisional	97.39
COG3391	381	Uncharacterized conserved protein [Function unknow	97.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.34
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.24
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.22
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.22
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.21
PHA03098	534	kelch-like protein; Provisional	97.21
KOG2444	238	consensus WD40 repeat protein [General function pr	97.16
KOG2395	644	consensus Protein involved in vacuole import and d	97.09
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.04
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.99
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.88
PRK13616	591	lipoprotein LpqB; Provisional	96.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.78
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.77
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.61
PHA02790	480	Kelch-like protein; Provisional	96.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.55
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.34
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.33
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.21
PHA03098	534	kelch-like protein; Provisional	96.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.13
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.04
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.0
KOG2247	615	consensus WD40 repeat-containing protein [General	96.0
PHA02790	480	Kelch-like protein; Provisional	96.0
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	95.91
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.85
PRK13616	591	lipoprotein LpqB; Provisional	95.81
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.8
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.42
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.22
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.18
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.18
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.17
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.09
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.06
KOG2247	615	consensus WD40 repeat-containing protein [General	94.95
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.95
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.91
COG4590	733	ABC-type uncharacterized transport system, permeas	94.71
PRK13684	334	Ycf48-like protein; Provisional	94.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.65
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.2
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.86
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.82
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	93.59
COG5167	776	VID27 Protein involved in vacuole import and degra	93.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.22
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.13
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.13
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.07
COG4590	733	ABC-type uncharacterized transport system, permeas	92.78
PRK10115	686	protease 2; Provisional	92.67
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.63
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.52
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.48
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.4
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.21
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.88
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.87
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.76
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.36
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.32
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.0
COG5167	776	VID27 Protein involved in vacuole import and degra	90.87
COG5276	370	Uncharacterized conserved protein [Function unknow	90.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.68
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.57
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.12
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.45
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.81
COG5276	370	Uncharacterized conserved protein [Function unknow	87.58
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.49
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.37
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.21
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.79
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.08
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.59
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.42
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.92
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.76
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	84.29
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.21
PLN02153	341	epithiospecifier protein	84.05
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	83.56
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.46
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	83.43
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.4
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.76
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	82.56
KOG2377	657	consensus Uncharacterized conserved protein [Funct	82.05
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	82.04
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	81.98
PRK10115	686	protease 2; Provisional	81.83
PRK13684	334	Ycf48-like protein; Provisional	81.66

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-50  Score=307.52  Aligned_cols=297  Identities=20%  Similarity=0.325  Sum_probs=249.5

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      +-.++...+.||.++|.|++|+|    +|..||+|+.|. +++||+.+..+...++.     |..-|.+++|+  |||+ 
T Consensus       103 pvtrCssS~~GH~e~Vl~~~fsp----~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-----H~~WVlcvaws--PDgk-  170 (480)
T KOG0271|consen  103 PVTRCSSSIAGHGEAVLSVQFSP----TGSRLVTGSGDTTVRLWDLDTETPLFTCKG-----HKNWVLCVAWS--PDGK-  170 (480)
T ss_pred             ccceeccccCCCCCcEEEEEecC----CCceEEecCCCceEEeeccCCCCcceeecC-----CccEEEEEEEC--CCcc-
Confidence            44567788899999999999999    789999999999 99999999998888875     77888888887  9999 


Q ss_pred             EEEEeecCCeEEEEEccCccee-eeeccCCCceEEEEEeCC----CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      .||+|+.||+|++||..+++++ ..+.+|...|++++|.|-    ...+|++++.||.|+|||+..++++..+.   +|.
T Consensus       171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls---gHT  247 (480)
T KOG0271|consen  171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS---GHT  247 (480)
T ss_pred             hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---cCc
Confidence            9999999999999999998755 678999999999999872    45689999999999999999999999999   899


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceee--ee------ceeec-------------CCCCC----------
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV--EK------SFTWT-------------DLPSK----------  223 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~------~~~~~-------------~~~~~----------  223 (346)
                      .+|+|+.|-  +..++++|+.|++|++|+...+....  ..      .....             +....          
T Consensus       248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al  325 (480)
T KOG0271|consen  248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL  325 (480)
T ss_pred             cceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence            999999996  67899999999999999987722110  00      00000             00000          


Q ss_pred             -------------------------CCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          224 -------------------------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       224 -------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                                               .......+++..+.+|...|..+.|+  +.++++++.|..|++||.++++     
T Consensus       326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-----  400 (480)
T KOG0271|consen  326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-----  400 (480)
T ss_pred             HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc-----
Confidence                                     01222234566778899999999999  7899999999999999999998     


Q ss_pred             ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCC
Q 019117          277 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSV  345 (346)
Q Consensus       277 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~  345 (346)
                          .+..+.+|-+.|+.++|+.|.  ++|++|+.|.++++|++++.+...-.. +...+.++.|+|||.
T Consensus       401 ----~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  401 ----FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ  464 (480)
T ss_pred             ----hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence                789999999999999999999  799999999999999999987544332 445589999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.6e-48  Score=299.35  Aligned_cols=250  Identities=25%  Similarity=0.416  Sum_probs=231.4

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      +.....++|.||.+.|.++.|+|.+  ++.-+|+|+.|+ +++|++.....+..+..     |...|..++|.  |+|+ 
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-----H~~RVs~VafH--PsG~-  274 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLEG-----HLARVSRVAFH--PSGK-  274 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhhc-----chhhheeeeec--CCCc-
Confidence            3458889999999999999999953  367999999999 99999988877777765     66677666655  9999 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      +|++++.|.+-++||+.++..+....+|...|.+++|.| ++.++++|+.|..-+|||+++++++..+.   +|..+|.+
T Consensus       275 ~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k~I~~  350 (459)
T KOG0272|consen  275 FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIKEILS  350 (459)
T ss_pred             eeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEec---ccccceee
Confidence            999999999999999999999999999999999999999 99999999999999999999999999999   89999999


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEE
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK  256 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~  256 (346)
                      ++|+| +|..++||+.|++++|||++.                       ...+..+..|.+-|+.+.|+   |.+|+++
T Consensus       351 V~fsP-NGy~lATgs~Dnt~kVWDLR~-----------------------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  351 VAFSP-NGYHLATGSSDNTCKVWDLRM-----------------------RSELYTIPAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             EeECC-CceEEeecCCCCcEEEeeecc-----------------------cccceecccccchhhheEecccCCeEEEEc
Confidence            99999 999999999999999999998                       55688999999999999998   7899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +.|++++||...+..         +++.+.+|++.|.++++++|+  .++++++.|.++++|.
T Consensus       407 syD~t~kiWs~~~~~---------~~ksLaGHe~kV~s~Dis~d~--~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  407 SYDNTVKIWSTRTWS---------PLKSLAGHEGKVISLDISPDS--QAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCcceeeecCCCcc---------cchhhcCCccceEEEEeccCC--ceEEEeccCceeeecc
Confidence            999999999999887         899999999999999999999  6999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-46  Score=288.86  Aligned_cols=276  Identities=18%  Similarity=0.290  Sum_probs=246.4

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ..+...-.|-..+|..+.|++    +++.||||+-+| +++|+......+..+.+     |...+.++.|.+..++. .+
T Consensus       165 ~~l~~SQ~gd~rPis~~~fS~----ds~~laT~swsG~~kvW~~~~~~~~~~l~g-----H~~~v~~~~fhP~~~~~-~l  234 (459)
T KOG0272|consen  165 LELVCSQVGDTRPISGCSFSR----DSKHLATGSWSGLVKVWSVPQCNLLQTLRG-----HTSRVGAAVFHPVDSDL-NL  234 (459)
T ss_pred             hhhhhhhccCCCcceeeEeec----CCCeEEEeecCCceeEeecCCcceeEEEec-----cccceeeEEEccCCCcc-ce
Confidence            333444456788999999998    789999999999 99999988877777775     77788888887332244 89


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      |+|+.||++++|++.+..++..+.+|...|..++|+| ++++|+|++.|.+-++||++++..+....   +|...|.+++
T Consensus       235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QE---GHs~~v~~ia  310 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQE---GHSKGVFSIA  310 (459)
T ss_pred             eeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhc---ccccccceeE
Confidence            9999999999999999999999999999999999999 99999999999999999999998887777   8999999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD  259 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  259 (346)
                      |+| +|.+++||+.|..-+|||+++                       ...+..+.+|.+.|.++.|+  |..|+||+.|
T Consensus       311 f~~-DGSL~~tGGlD~~~RvWDlRt-----------------------gr~im~L~gH~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  311 FQP-DGSLAATGGLDSLGRVWDLRT-----------------------GRCIMFLAGHIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             ecC-CCceeeccCccchhheeeccc-----------------------CcEEEEecccccceeeEeECCCceEEeecCCC
Confidence            999 999999999999999999999                       55788899999999999999  7799999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEE
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHV  338 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~  338 (346)
                      ++++|||++..+         .+..+.+|..-|+.++|+|+.. .+|++++.|++++||...+..++. ...+.+.|.++
T Consensus       367 nt~kVWDLR~r~---------~ly~ipAH~nlVS~Vk~~p~~g-~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  367 NTCKVWDLRMRS---------ELYTIPAHSNLVSQVKYSPQEG-YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL  436 (459)
T ss_pred             CcEEEeeecccc---------cceecccccchhhheEecccCC-eEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence            999999999876         6889999999999999999433 799999999999999999998766 45677789999


Q ss_pred             EecCCCCC
Q 019117          339 KYNPQSVY  346 (346)
Q Consensus       339 ~~spdg~~  346 (346)
                      ..+|||.+
T Consensus       437 Dis~d~~~  444 (459)
T KOG0272|consen  437 DISPDSQA  444 (459)
T ss_pred             EeccCCce
Confidence            99999964

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.9e-44  Score=263.34  Aligned_cols=276  Identities=20%  Similarity=0.329  Sum_probs=241.8

Q ss_pred             cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCC
Q 019117           19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (346)
                      .+-.++..++|+||.+.|+++.|++    +.+++++++.|+ +.|||..+....+.+.-       ...+.+..+|+|.|
T Consensus        41 ~~i~~~~rr~LkGH~~Ki~~~~ws~----Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------~s~WVMtCA~sPSg  109 (343)
T KOG0286|consen   41 GRIQMRTRRTLKGHLNKIYAMDWST----DSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------PSSWVMTCAYSPSG  109 (343)
T ss_pred             eeeeeeeEEEecccccceeeeEecC----CcCeEEeeccCCeEEEEEcccccceeEEec-------CceeEEEEEECCCC
Confidence            4556778899999999999999999    789999999999 99999999888776653       23455666677999


Q ss_pred             CcEEEEeecCCeEEEEEccCc------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117           98 IPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG  171 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  171 (346)
                      + ++|.|+.|+...||++.+.      +..+.+.+|++.+.++.|-+  ...|++++.|.++.+||+++++.+..|.   
T Consensus       110 ~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~---  183 (343)
T KOG0286|consen  110 N-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFH---  183 (343)
T ss_pred             C-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEec---
Confidence            9 9999999999999999865      35567899999999999986  5789999999999999999999999999   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      +|.+.|.+++++|.+++.+++|+.|+..++||+|.                       ...+.++.+|+..|.++.|.  
T Consensus       184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-----------------------~~c~qtF~ghesDINsv~ffP~  240 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-----------------------GQCVQTFEGHESDINSVRFFPS  240 (343)
T ss_pred             CCcccEEEEecCCCCCCeEEecccccceeeeeccC-----------------------cceeEeecccccccceEEEccC
Confidence            89999999999998899999999999999999999                       56788999999999999998  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      |.-+++|+.|++.|+||++..+.         +..+.  ....+|++++||..|  ++|.+|..|..+.+||.-.++.+.
T Consensus       241 G~afatGSDD~tcRlyDlRaD~~---------~a~ys~~~~~~gitSv~FS~SG--RlLfagy~d~~c~vWDtlk~e~vg  309 (343)
T KOG0286|consen  241 GDAFATGSDDATCRLYDLRADQE---------LAVYSHDSIICGITSVAFSKSG--RLLFAGYDDFTCNVWDTLKGERVG  309 (343)
T ss_pred             CCeeeecCCCceeEEEeecCCcE---------EeeeccCcccCCceeEEEcccc--cEEEeeecCCceeEeeccccceEE
Confidence            88999999999999999998763         33332  235689999999999  799999999999999998887654


Q ss_pred             -eeeeeeeEEEEEecCCCC
Q 019117          328 -IARLICFSLHVKYNPQSV  345 (346)
Q Consensus       328 -~~~~~~~~~~~~~spdg~  345 (346)
                       ...+...+.++..+|||-
T Consensus       310 ~L~GHeNRvScl~~s~DG~  328 (343)
T KOG0286|consen  310 VLAGHENRVSCLGVSPDGM  328 (343)
T ss_pred             EeeccCCeeEEEEECCCCc
Confidence             345666799999999983

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-45  Score=279.50  Aligned_cols=250  Identities=20%  Similarity=0.304  Sum_probs=220.5

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEE---cCCCCc
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC---NVDGIP   99 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~   99 (346)
                      .+..+.++|...|.|++|+|    ||+.+|+|+.++ |++||..+++++..-.    ..|...|.+++|.+   .|..+ 
T Consensus       148 Tp~~t~KgH~~WVlcvawsP----Dgk~iASG~~dg~I~lwdpktg~~~g~~l----~gH~K~It~Lawep~hl~p~~r-  218 (480)
T KOG0271|consen  148 TPLFTCKGHKNWVLCVAWSP----DGKKIASGSKDGSIRLWDPKTGQQIGRAL----RGHKKWITALAWEPLHLVPPCR-  218 (480)
T ss_pred             CcceeecCCccEEEEEEECC----CcchhhccccCCeEEEecCCCCCcccccc----cCcccceeEEeecccccCCCcc-
Confidence            34567799999999999999    899999999999 9999999988754322    24889999999974   35677 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC--------
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--------  171 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------  171 (346)
                      +|++++.||.++|||+..++++..+.+|+.+|+|+.|-  +..++++|+.|++|++|+...|++.+.++...        
T Consensus       219 ~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal  296 (480)
T KOG0271|consen  219 RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL  296 (480)
T ss_pred             ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence            99999999999999999999999999999999999996  46799999999999999988766554444221        


Q ss_pred             --------------------------------------------------------------------CCCcceEEEEec
Q 019117          172 --------------------------------------------------------------------GHRNEVLSVDFH  183 (346)
Q Consensus       172 --------------------------------------------------------------------~~~~~v~~~~~~  183 (346)
                                                                                          +|...|+.+.|+
T Consensus       297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS  376 (480)
T ss_pred             cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence                                                                                788889999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      | ++.++++++.|..|++||.++                       ++.+.++.+|-..|..++|+  .++|++|+.|.+
T Consensus       377 P-d~r~IASaSFDkSVkLW~g~t-----------------------Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT  432 (480)
T KOG0271|consen  377 P-DGRYIASASFDKSVKLWDGRT-----------------------GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST  432 (480)
T ss_pred             C-CccEEEEeecccceeeeeCCC-----------------------cchhhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence            9 999999999999999999998                       55678899999999999999  569999999999


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +++|++++.+         ....+.+|...|.++.|+|||  ..+++|+.|..+++|.
T Consensus       433 LKvw~V~tkK---------l~~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  433 LKVWDVRTKK---------LKQDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEEeeeee---------ecccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence            9999999987         788899999999999999999  6899999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-43  Score=258.67  Aligned_cols=274  Identities=21%  Similarity=0.328  Sum_probs=226.7

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-----eeeeEeeeecCCCccceEEEEEEEcC
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      ...+..++.+|++.|+.++..+.   +.+.+++++.|. +.+|++....     .++.+.     +|...|..+.++  +
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s--~   73 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLS--S   73 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEc--c
Confidence            45667788999999999999983   358999999999 9999987543     333443     377788888777  8


Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                      +|+ +.++++.|+.+++||+.+++..+.+.+|...|.+++|++ +...+++|+.|.+|++|+.. +.+..++... .+.+
T Consensus        74 dg~-~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~-g~ck~t~~~~-~~~~  149 (315)
T KOG0279|consen   74 DGN-FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTL-GVCKYTIHED-SHRE  149 (315)
T ss_pred             CCc-eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeec-ccEEEEEecC-CCcC
Confidence            998 999999999999999999999999999999999999999 89999999999999999987 4555555421 2388


Q ss_pred             ceEEEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117          176 EVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  252 (346)
Q Consensus       176 ~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  252 (346)
                      .|.|+.|+|+. ..+|++++.|++|++||+++.                       +....+.+|+..++.+.++  |.+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----------------------~l~~~~~gh~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----------------------QLRTTFIGHSGYVNTVTVSPDGSL  206 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----------------------chhhccccccccEEEEEECCCCCE
Confidence            99999999943 688999999999999999993                       3455778899999999999  889


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      +++|+.||.+.+||++.++         .++.+. +...|.+++|+|+.   +.++...+..|+|||++++..+...++.
T Consensus       207 casGgkdg~~~LwdL~~~k---------~lysl~-a~~~v~sl~fspnr---ywL~~at~~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGK---------NLYSLE-AFDIVNSLCFSPNR---YWLCAATATSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             EecCCCCceEEEEEccCCc---------eeEecc-CCCeEeeEEecCCc---eeEeeccCCceEEEeccchhhhhhcccc
Confidence            9999999999999999887         455544 45689999999986   4444555667999999999876655443


Q ss_pred             e----------eEEEEEecCCCC
Q 019117          333 C----------FSLHVKYNPQSV  345 (346)
Q Consensus       333 ~----------~~~~~~~spdg~  345 (346)
                      .          ...+++||+||+
T Consensus       274 ~~g~s~~~~~~~clslaws~dG~  296 (315)
T KOG0279|consen  274 GIGPSSKAGDPICLSLAWSADGQ  296 (315)
T ss_pred             ccccccccCCcEEEEEEEcCCCc
Confidence            2          145699999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-41  Score=257.68  Aligned_cols=278  Identities=19%  Similarity=0.319  Sum_probs=244.2

Q ss_pred             cccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC
Q 019117           17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        17 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      ....++..+.+.+.+|..+|+.+-|+|    +..+++++++|. |++||..+++....+++     |...+..++|.  .
T Consensus        92 ~~wipRp~l~~~l~g~r~~vt~v~~hp----~~~~v~~as~d~tikv~D~~tg~~e~~LrG-----Ht~sv~di~~~--a  160 (406)
T KOG0295|consen   92 ALWIPRPNLVQKLAGHRSSVTRVIFHP----SEALVVSASEDATIKVFDTETGELERSLRG-----HTDSVFDISFD--A  160 (406)
T ss_pred             hhcCCCCCchhhhhccccceeeeeecc----CceEEEEecCCceEEEEEccchhhhhhhhc-----cccceeEEEEe--c
Confidence            344466677888899999999999999    678999999898 99999999999888886     55667777666  7


Q ss_pred             CCCcEEEEeecCCeEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           96 DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      .|+ +|++++.|-.+++||..+ .++++.+.+|.-.|.++.|-| .+.++++++.|.+|+.|++.++.++.++.   +|.
T Consensus       161 ~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~  235 (406)
T KOG0295|consen  161 SGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP---GHS  235 (406)
T ss_pred             Ccc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEecc---Cch
Confidence            898 999999999999999987 567888899999999999999 78999999999999999999999999999   899


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-----
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----  249 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----  249 (346)
                      ..|+.++.+. ++.++++++.|.++++|-+.+                       ..+...+..|+..|-|++|.     
T Consensus       236 ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t-----------------------~~~k~~lR~hEh~vEci~wap~~~~  291 (406)
T KOG0295|consen  236 EWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT-----------------------KQCKAELREHEHPVECIAWAPESSY  291 (406)
T ss_pred             HhEEEEEecC-CeeEEEecCCCceEEEEEecc-----------------------chhhhhhhccccceEEEEecccccC
Confidence            9999999996 999999999999999999988                       33455677788888888873     


Q ss_pred             -------C-----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          250 -------G-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       250 -------~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                             |     +++.+++.|++|++||+.++.         ++.++.+|...|..++|+|.|  +||+++.+|+++++
T Consensus       292 ~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---------cL~tL~ghdnwVr~~af~p~G--kyi~ScaDDktlrv  360 (406)
T KOG0295|consen  292 PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---------CLFTLVGHDNWVRGVAFSPGG--KYILSCADDKTLRV  360 (406)
T ss_pred             cchhhccCCCCCccEEEeecccceEEEEeccCCe---------EEEEEecccceeeeeEEcCCC--eEEEEEecCCcEEE
Confidence                   2     599999999999999999987         899999999999999999999  79999999999999


Q ss_pred             EEcCCCCcceeee-eeeeEEEEEecCCCC
Q 019117          318 WELQSSPPVLIAR-LICFSLHVKYNPQSV  345 (346)
Q Consensus       318 wd~~~~~~~~~~~-~~~~~~~~~~spdg~  345 (346)
                      ||+++++...... ++..++++.|..+-.
T Consensus       361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p  389 (406)
T KOG0295|consen  361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAP  389 (406)
T ss_pred             EEeccceeeeccCCCcceeEEEecCCCCc
Confidence            9999988766544 445588888876654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1e-39  Score=240.37  Aligned_cols=271  Identities=18%  Similarity=0.233  Sum_probs=217.3

Q ss_pred             ceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceE
Q 019117            9 EPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY   87 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~   87 (346)
                      ..-.|.++.....-..+++.|+||...|..++.++    +|++.++++.|+ +++||+.+++....+.+     |...|.
T Consensus        39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----dg~~alS~swD~~lrlWDl~~g~~t~~f~G-----H~~dVl  109 (315)
T KOG0279|consen   39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----DGNFALSASWDGTLRLWDLATGESTRRFVG-----HTKDVL  109 (315)
T ss_pred             EEEEEEeccCccccCceeeeeeccceEecceEEcc----CCceEEeccccceEEEEEecCCcEEEEEEe-----cCCceE
Confidence            34456666655555677889999999999999999    899999999999 99999999988777765     777887


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeE
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      +++++  +|++ .+++|+.|.+|++|+.... +..++..  +.+.|.|+.|+|.. ..+|++++.|++|++||+++.+..
T Consensus       110 sva~s--~dn~-qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~  185 (315)
T KOG0279|consen  110 SVAFS--TDNR-QIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR  185 (315)
T ss_pred             EEEec--CCCc-eeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence            77766  9998 9999999999999997644 4444433  37899999999943 679999999999999999999988


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ..+.   +|.+.++.++++| +|.++++|+.||.+.+||++..                       ..++ ...|...|.
T Consensus       186 ~~~~---gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-----------------------k~ly-sl~a~~~v~  237 (315)
T KOG0279|consen  186 TTFI---GHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-----------------------KNLY-SLEAFDIVN  237 (315)
T ss_pred             hccc---cccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-----------------------ceeE-eccCCCeEe
Confidence            8888   8999999999999 9999999999999999999983                       3333 345788899


Q ss_pred             EEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          245 CNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       245 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      +++|+ .++.++...+..|+|||+.+............-.........-.+++|++||  ..|.+|..|+.|++|.+..
T Consensus       238 sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG--~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  238 SLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG--QTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             eEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC--cEEEeeecCCcEEEEEeec
Confidence            99999 5577777777889999999886422211100000111223345678999999  6899999999999998753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-40  Score=261.13  Aligned_cols=261  Identities=20%  Similarity=0.343  Sum_probs=236.9

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ...|++++|+.    +|.+||+|+.+| +++|+ ..|..+..+..     |.++|.++.|.  ..|. ||++++.|+++.
T Consensus       235 nkdVT~L~Wn~----~G~~LatG~~~G~~riw~-~~G~l~~tl~~-----HkgPI~slKWn--k~G~-yilS~~vD~tti  301 (524)
T KOG0273|consen  235 NKDVTSLDWNN----DGTLLATGSEDGEARIWN-KDGNLISTLGQ-----HKGPIFSLKWN--KKGT-YILSGGVDGTTI  301 (524)
T ss_pred             cCCcceEEecC----CCCeEEEeecCcEEEEEe-cCchhhhhhhc-----cCCceEEEEEc--CCCC-EEEeccCCccEE
Confidence            35799999997    899999999999 99999 56666666654     88899999998  8898 999999999999


Q ss_pred             EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      +||..+++..+.+.-|..+-.+|.|-.  ...|++++.|+.|+|+.+....++.++.   +|.++|.++.|+| .+.+|+
T Consensus       302 lwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~-tg~LLa  375 (524)
T KOG0273|consen  302 LWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNP-TGSLLA  375 (524)
T ss_pred             EEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECC-CCceEE
Confidence            999999999999998998878999984  6789999999999999999999999999   8999999999999 999999


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-----------CCEEEEEeecC
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----------GDFILSKSVDN  260 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~l~~~~~d~  260 (346)
                      +++.|++++||.+..                       ......+..|...|..+.|+           +..+++++.|+
T Consensus       376 S~SdD~TlkiWs~~~-----------------------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds  432 (524)
T KOG0273|consen  376 SCSDDGTLKIWSMGQ-----------------------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS  432 (524)
T ss_pred             EecCCCeeEeeecCC-----------------------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence            999999999999877                       34566788899999999987           34899999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEe
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKY  340 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  340 (346)
                      +|++||+..+.         ++..+..|..+|.+++|+|++  +++|+|+.||.|.+|++++++....+.-.+.+..++|
T Consensus       433 tV~lwdv~~gv---------~i~~f~kH~~pVysvafS~~g--~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~W  501 (524)
T KOG0273|consen  433 TVKLWDVESGV---------PIHTLMKHQEPVYSVAFSPNG--RYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCW  501 (524)
T ss_pred             eEEEEEccCCc---------eeEeeccCCCceEEEEecCCC--cEEEecCCCCeeEeccccchheeEeecCCCeEEEEEE
Confidence            99999999887         788999999999999999999  7999999999999999999999888888888999999


Q ss_pred             cCCCCC
Q 019117          341 NPQSVY  346 (346)
Q Consensus       341 spdg~~  346 (346)
                      |-+|.+
T Consensus       502 n~~G~k  507 (524)
T KOG0273|consen  502 NAAGDK  507 (524)
T ss_pred             cCCCCE
Confidence            998853

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-40  Score=251.96  Aligned_cols=259  Identities=19%  Similarity=0.326  Sum_probs=232.9

Q ss_pred             ccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEc
Q 019117           16 TPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN   94 (346)
Q Consensus        16 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   94 (346)
                      .|+...+|++.+.+++|.+.|.|+++.|    ..++|++|+.|+ ++|||+.+++....+.+     |-..|..++++  
T Consensus       134 rPeWHapwKl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlatg~LkltltG-----hi~~vr~vavS--  202 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLATGQLKLTLTG-----HIETVRGVAVS--  202 (460)
T ss_pred             CccccCcceehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEcccCeEEEeecc-----hhheeeeeeec--
Confidence            3566678999999999999999999999    569999999999 99999999998888775     66677778776  


Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      +... |+++++.|+.|+.||+...+.++.+.+|-..|.+++.+| .-..|++|+.|.++++||+++...+..+.   +|.
T Consensus       203 ~rHp-YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~---GH~  277 (460)
T KOG0285|consen  203 KRHP-YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLS---GHT  277 (460)
T ss_pred             ccCc-eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEec---CCC
Confidence            6676 999999999999999999999999999999999999999 88999999999999999999999999999   899


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  252 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  252 (346)
                      .+|..+.+.| -...+++|+.|++|++||++.                       +.....+..|...+.+++.+  ...
T Consensus       278 ~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a-----------------------gkt~~tlt~hkksvral~lhP~e~~  333 (460)
T KOG0285|consen  278 NPVASVMCQP-TDPQVITGSHDSTVRLWDLRA-----------------------GKTMITLTHHKKSVRALCLHPKENL  333 (460)
T ss_pred             CcceeEEeec-CCCceEEecCCceEEEeeecc-----------------------CceeEeeecccceeeEEecCCchhh
Confidence            9999999998 556699999999999999999                       55677888999999999998  456


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      +++++.| .|+-|++..+.         .++.+.+|..-|.+++...|+   ++++|+++|.+.+||.+++...+
T Consensus       334 fASas~d-nik~w~~p~g~---------f~~nlsgh~~iintl~~nsD~---v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  334 FASASPD-NIKQWKLPEGE---------FLQNLSGHNAIINTLSVNSDG---VLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             hhccCCc-cceeccCCccc---------hhhccccccceeeeeeeccCc---eEEEcCCceEEEEEecCcCcccc
Confidence            7777776 59999998877         678899999999999999987   89999999999999999986443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1e-40  Score=277.73  Aligned_cols=249  Identities=21%  Similarity=0.333  Sum_probs=221.1

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--------eeeeE------------------eeeecC
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--------VIAAL------------------QSYVDE   80 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--------~~~~~------------------~~~~~~   80 (346)
                      ++.--...++|..|++    ++.++|.|-.|. |++|.+...+        .+..+                  ......
T Consensus       373 T~~nt~~~v~ca~fSd----dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSD----DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEcCCcceeEeecC----CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            3333456799999998    778999999888 9999986311        11111                  011123


Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                      +|.++|+.++|+  |+.+ +|++++.|+++++|.+.+..++-.+++|..+|+++.|+| .+.+|||++.|++-++|....
T Consensus       449 GH~GPVyg~sFs--Pd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  449 GHSGPVYGCSFS--PDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             cCCCceeeeeec--cccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeeccc
Confidence            588999988887  9998 999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      .++++.+.   +|-+.|.|+.|+| +..++++|+.|.+|++||+.+                       +..++.+.+|.
T Consensus       525 ~~PlRifa---ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~-----------------------G~~VRiF~GH~  577 (707)
T KOG0263|consen  525 NKPLRIFA---GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST-----------------------GNSVRIFTGHK  577 (707)
T ss_pred             CCchhhhc---ccccccceEEECC-cccccccCCCCceEEEEEcCC-----------------------CcEEEEecCCC
Confidence            89999988   8999999999999 999999999999999999999                       55688899999


Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      .+|.+++|+  |.+|++|+.||.|.+||+.+++         .+..+.+|.+.|.++.||.||  ..||+|+.|++|++|
T Consensus       578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDG--NVLASGGADNSVRLW  646 (707)
T ss_pred             CceEEEEEcCCCceEeecccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCC--CEEEecCCCCeEEEE
Confidence            999999999  9999999999999999999987         788999999999999999999  799999999999999


Q ss_pred             EcCC
Q 019117          319 ELQS  322 (346)
Q Consensus       319 d~~~  322 (346)
                      |+..
T Consensus       647 D~~~  650 (707)
T KOG0263|consen  647 DLTK  650 (707)
T ss_pred             Echh
Confidence            9875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.4e-39  Score=235.96  Aligned_cols=267  Identities=14%  Similarity=0.254  Sum_probs=225.7

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ...++..+++...+.|+.+...|    ++..||+++...|++||+.++... .+..|  +.|.+.|.++.|.  .+|+ .
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTp----dk~~LAaa~~qhvRlyD~~S~np~-Pv~t~--e~h~kNVtaVgF~--~dgr-W   97 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITP----DKKDLAAAGNQHVRLYDLNSNNPN-PVATF--EGHTKNVTAVGFQ--CDGR-W   97 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcC----CcchhhhccCCeeEEEEccCCCCC-ceeEE--eccCCceEEEEEe--ecCe-E
Confidence            34566777777778899999999    789999999999999999987753 22223  2377888888887  7899 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +++|++||+++|||++...+.+.++ |..+|+++..+| +...|++|..+|.|++||+....+...+..  .....|.++
T Consensus        98 MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liP--e~~~~i~sl  173 (311)
T KOG0315|consen   98 MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIP--EDDTSIQSL  173 (311)
T ss_pred             EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCC--CCCcceeeE
Confidence            9999999999999999977777666 779999999999 889999999999999999998877776653  345789999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      ...| ++.+++.+...|...+|++-....                 ...-.|+.++..|+..+..+.++  +++|++++.
T Consensus       174 ~v~~-dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  174 TVMP-DGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             EEcC-CCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence            9999 999999999999999999987221                 12245677899999999999999  789999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      |.+++||+.++.-        .....+.+|...++.++||.|+  .||++++.|+.+++|++..++.+..+
T Consensus       236 dktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg--~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  236 DKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADG--EYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             CceEEEEecCCce--------eeEEEeecCCceEEeeeeccCc--cEEEecCCCCceeecccccCceeeec
Confidence            9999999998761        2556778899999999999999  79999999999999999999855543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-40  Score=267.29  Aligned_cols=269  Identities=22%  Similarity=0.369  Sum_probs=233.1

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ..+++..|.++|.++.|+|+    ..++.++-.+| |.|||..+...++.+..     ...+|.+..|.  +..+ .+++
T Consensus         5 ~krk~~~rSdRVKsVd~HPt----ePw~la~LynG~V~IWnyetqtmVksfeV-----~~~PvRa~kfi--aRkn-Wiv~   72 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPT----EPWILAALYNGDVQIWNYETQTMVKSFEV-----SEVPVRAAKFI--ARKN-WIVT   72 (794)
T ss_pred             hhhHhhccCCceeeeecCCC----CceEEEeeecCeeEEEecccceeeeeeee-----cccchhhheee--eccc-eEEE
Confidence            34566779999999999994    45666666666 99999999888888775     55667777776  4444 9999


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEe
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      |+.|..|+||+.++++.+..+.+|.+.|.+++.+| ...+++++|+|-+|++||.+.+ .+.+++.   +|...|.+++|
T Consensus        73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfe---GH~HyVMqv~f  148 (794)
T KOG0276|consen   73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFE---GHEHYVMQVAF  148 (794)
T ss_pred             ecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEc---CcceEEEEEEe
Confidence            99999999999999999999999999999999999 7889999999999999999865 5566777   89999999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CC---EEEEEee
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD---FILSKSV  258 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---~l~~~~~  258 (346)
                      +|.+.+.+++++.|++|++|.+.+                       ..+.+++.+|...|.|+.|- +.   +|++|+.
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs-----------------------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGS-----------------------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCC-----------------------CCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence            999999999999999999999998                       66888999999999999998 44   9999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-eEEE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-FSLH  337 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~  337 (346)
                      |.+|+|||..+..         +++++.+|...|..+.|+|.-  .++++|++||+++||+..+-+......+.. .+++
T Consensus       206 D~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v~fhp~l--piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~  274 (794)
T KOG0276|consen  206 DLTIKVWDYQTKS---------CVQTLEGHTNNVSFVFFHPEL--PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWC  274 (794)
T ss_pred             CceEEEeecchHH---------HHHHhhcccccceEEEecCCC--cEEEEecCCccEEEecCcceehhhhhhcCCceEEE
Confidence            9999999999877         999999999999999999998  799999999999999999877655544432 3566


Q ss_pred             EEecCC
Q 019117          338 VKYNPQ  343 (346)
Q Consensus       338 ~~~spd  343 (346)
                      ++-.+.
T Consensus       275 I~~~k~  280 (794)
T KOG0276|consen  275 IAAHKG  280 (794)
T ss_pred             EeecCC
Confidence            654443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.2e-40  Score=244.23  Aligned_cols=275  Identities=20%  Similarity=0.361  Sum_probs=232.3

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ...+...+.+|++.|+.+.|+|    +|.+||+|+.|. |.+|+.... +....++     .|.+.|..+.|.  +|+. 
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~--~d~s-  103 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRAIVLWNVYGDCENFWVLK-----GHSGAVMELHGM--RDGS-  103 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECC----CCCeEeecCCcceEEEEeccccccceeeec-----cccceeEeeeec--cCCC-
Confidence            3445667799999999999999    789999999999 999995533 3333343     488899888887  8898 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      .|++++.|.+++.||+++|+.++.+++|.+-|+.+.-+..+..++.+++.|+++++||+++...++++.    ...++++
T Consensus       104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltA  179 (338)
T KOG0265|consen  104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTA  179 (338)
T ss_pred             EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEE
Confidence            999999999999999999999999999999999998666567788999999999999999999999886    6789999


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +.|.. .+..+++|+-|+.|++||++.                       ......+.+|.+.|+.+..+  |.++++-+
T Consensus       180 v~f~d-~s~qv~sggIdn~ikvWd~r~-----------------------~d~~~~lsGh~DtIt~lsls~~gs~llsns  235 (338)
T KOG0265|consen  180 VGFKD-TSDQVISGGIDNDIKVWDLRK-----------------------NDGLYTLSGHADTITGLSLSRYGSFLLSNS  235 (338)
T ss_pred             EEecc-cccceeeccccCceeeecccc-----------------------CcceEEeecccCceeeEEeccCCCcccccc
Confidence            99995 889999999999999999998                       56788999999999999998  89999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      .|.++++||++.....     ..++..+.+|    +.....++|+|++  ..+.+|+.|..+++||.....  ..+.+++
T Consensus       236 Md~tvrvwd~rp~~p~-----~R~v~if~g~~hnfeknlL~cswsp~~--~~i~ags~dr~vyvwd~~~r~--~lyklpG  306 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPS-----QRCVKIFQGHIHNFEKNLLKCSWSPNG--TKITAGSADRFVYVWDTTSRR--ILYKLPG  306 (338)
T ss_pred             ccceEEEEEecccCCC-----CceEEEeecchhhhhhhcceeeccCCC--CccccccccceEEEeeccccc--EEEEcCC
Confidence            9999999999876421     1134455543    2345678999999  789999999999999988754  3444444


Q ss_pred             ---eEEEEEecCCCC
Q 019117          334 ---FSLHVKYNPQSV  345 (346)
Q Consensus       334 ---~~~~~~~spdg~  345 (346)
                         .++++.|.|..+
T Consensus       307 h~gsvn~~~Fhp~e~  321 (338)
T KOG0265|consen  307 HYGSVNEVDFHPTEP  321 (338)
T ss_pred             cceeEEEeeecCCCc
Confidence               589999999765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.7e-39  Score=232.77  Aligned_cols=255  Identities=16%  Similarity=0.278  Sum_probs=212.3

Q ss_pred             ccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--eeeeec
Q 019117           49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFV  125 (346)
Q Consensus        49 ~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~  125 (346)
                      .-+||+++.|. |++|...+|.+...++.     .+..|..+.+.  |+++ .||+++ ...|++||+++++  ++.++.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh-----~dsqVNrLeiT--pdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e   80 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQH-----PDSQVNRLEIT--PDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE   80 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEec-----CccceeeEEEc--CCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe
Confidence            36899999998 99999999999999984     55678888777  9998 888887 4679999998875  688999


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                      +|+..|+.+.|.. ++..+++|++||+++|||++...+.+.++    |..+|+++..+| +...|++|..+|.|++||+.
T Consensus        81 ~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   81 GHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             ccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc----CCCCcceEEecC-CcceEEeecCCCcEEEEEcc
Confidence            9999999999999 99999999999999999999988888886    889999999999 77889999999999999999


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ  283 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  283 (346)
                      ......                      ..+......|.++...  |.+++.+...|..++|++.....   .....++.
T Consensus       155 ~~~c~~----------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~  209 (311)
T KOG0315|consen  155 ENSCTH----------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVH  209 (311)
T ss_pred             CCcccc----------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhh
Confidence            832100                      0111122334444443  99999999999999999987442   23445788


Q ss_pred             cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee---EEEEEecCCCCC
Q 019117          284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF---SLHVKYNPQSVY  346 (346)
Q Consensus       284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~spdg~~  346 (346)
                      +++.|.+.+..+.+|||+  ++||++|.|.+++||+.++. ......+.++   ++.++||-||+|
T Consensus       210 k~~ah~~~il~C~lSPd~--k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y  272 (311)
T KOG0315|consen  210 KFQAHNGHILRCLLSPDV--KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY  272 (311)
T ss_pred             heecccceEEEEEECCCC--cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE
Confidence            899999999999999999  79999999999999999987 4444455544   889999999987

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.5e-41  Score=259.66  Aligned_cols=264  Identities=19%  Similarity=0.287  Sum_probs=228.8

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      -+.+|..|.|.|    +|+.|++|+..| +.+|+...-.....+     ..|+..|.++.|+  ++|. ++++|+.+|.|
T Consensus        95 vkc~V~~v~WtP----eGRRLltgs~SGEFtLWNg~~fnFEtil-----QaHDs~Vr~m~ws--~~g~-wmiSgD~gG~i  162 (464)
T KOG0284|consen   95 VKCPVNVVRWTP----EGRRLLTGSQSGEFTLWNGTSFNFETIL-----QAHDSPVRTMKWS--HNGT-WMISGDKGGMI  162 (464)
T ss_pred             cccceeeEEEcC----CCceeEeecccccEEEecCceeeHHHHh-----hhhcccceeEEEc--cCCC-EEEEcCCCceE
Confidence            356799999999    889999999988 999996332222222     3589999999998  8898 99999999999


Q ss_pred             EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      ++|+.+-.........|...|++++|+| +...|+++++||+|+|||....+....+.   +|.-.|++++|+| ...++
T Consensus       163 KyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~---GHgwdVksvdWHP-~kgLi  237 (464)
T KOG0284|consen  163 KYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLR---GHGWDVKSVDWHP-TKGLI  237 (464)
T ss_pred             EecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheec---cCCCCcceeccCC-cccee
Confidence            9999765544333344559999999999 88999999999999999999998888887   8999999999999 88899


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      ++++.|..|++||.++                       ..++.++..|...|..+.|+  +++|+++|.|..++++|++
T Consensus       238 asgskDnlVKlWDprS-----------------------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRS-----------------------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             EEccCCceeEeecCCC-----------------------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence            9999999999999999                       56788999999999999999  8899999999999999999


Q ss_pred             CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCCCC
Q 019117          269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQSV  345 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spdg~  345 (346)
                      +.+         .+..+.+|...|+++.|+|-.+ .+|++|+.||.|..|.+...+++...  .+.+.+++++|+|=|-
T Consensus       295 ~mk---------El~~~r~Hkkdv~~~~WhP~~~-~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh  363 (464)
T KOG0284|consen  295 TMK---------ELFTYRGHKKDVTSLTWHPLNE-SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH  363 (464)
T ss_pred             HhH---------HHHHhhcchhhheeeccccccc-cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence            766         6899999999999999999887 69999999999999999866665543  4556699999999763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-38  Score=231.64  Aligned_cols=269  Identities=20%  Similarity=0.320  Sum_probs=214.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +...+.+++|.++|..++|+|.   .|.+||+|+.|+ |++|+...+.. ..+.......|...|..++|+  |.|+ +|
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAws--p~g~-~L   76 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPG---KGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWS--PHGR-YL   76 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccC---CceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeec--CCCc-EE
Confidence            4556788999999999999991   267999999999 99999875333 344444555799999999998  8899 99


Q ss_pred             EEeecCCeEEEEEccCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          102 VAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      ++|+.|.++.||.-..+  +++.++.+|...|.+++|++ ++++||++++|..|-||.+..+.........+.|...|..
T Consensus        77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            99999999999986544  57889999999999999999 9999999999999999999855444333333389999999


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +.|+| ...+|++++.|.+|++|+-....                    .-....++.+|...|.+++|+  |..|++++
T Consensus       156 V~WHP-t~dlL~S~SYDnTIk~~~~~~dd--------------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  156 VIWHP-TEDLLFSCSYDNTIKVYRDEDDD--------------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             EEEcC-CcceeEEeccCCeEEEEeecCCC--------------------CeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            99999 88999999999999999876311                    134567888899999999998  78999999


Q ss_pred             ecCeEEEEcCCCCCCC---------------------------------CCCcccccc-ccccCCCcCeeEEEEeecCCc
Q 019117          258 VDNEIVLWEPKMKEQS---------------------------------PGEGTADIL-QKYPVPECDIWFIKFSCDFHY  303 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~---------------------------------~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~  303 (346)
                      .|++++||...+.-..                                 +..+....+ .....|...|+++.|.|... 
T Consensus       215 dD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~-  293 (312)
T KOG0645|consen  215 DDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS-  293 (312)
T ss_pred             CCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC-
Confidence            9999999984322100                                 000111111 23345888999999999544 


Q ss_pred             ceEEEEcCCCcEEEEEcC
Q 019117          304 NAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       304 ~~l~~~~~dg~i~iwd~~  321 (346)
                      .+|++|+.||.|++|.+.
T Consensus       294 ~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  294 NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CceeecCCCceEEEEEec
Confidence            699999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-39  Score=238.87  Aligned_cols=246  Identities=17%  Similarity=0.266  Sum_probs=211.3

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee---eeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI---AALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      .+.-....|..++|+|    .|+++|.|+-|+ ..||++.+....   +..+.+  ..|..-+.++.|.  +|+  .|++
T Consensus        92 aipl~s~WVMtCA~sP----Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l--~gHtgylScC~f~--dD~--~ilT  161 (343)
T KOG0286|consen   92 AIPLPSSWVMTCAYSP----SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL--AGHTGYLSCCRFL--DDN--HILT  161 (343)
T ss_pred             EEecCceeEEEEEECC----CCCeEEecCcCceeEEEecccccccccceeeeee--cCccceeEEEEEc--CCC--ceEe
Confidence            3344567899999999    899999999998 999998854211   111111  2377777777775  555  6999


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      ++.|.++.+||+++++.+..+.+|.+.|.++.++|.+++.|++|+-|++.++||++.+.+.+.|.   +|+..|+++.|.
T Consensus       162 ~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ff  238 (343)
T KOG0286|consen  162 GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFF  238 (343)
T ss_pred             cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec---ccccccceEEEc
Confidence            99999999999999999999999999999999999889999999999999999999999999999   899999999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      | ++.-+++|+.|++.++||+|..+.                     ..++.-..-..+|++++|+  |++|.+|..|.+
T Consensus       239 P-~G~afatGSDD~tcRlyDlRaD~~---------------------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~  296 (343)
T KOG0286|consen  239 P-SGDAFATGSDDATCRLYDLRADQE---------------------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT  296 (343)
T ss_pred             c-CCCeeeecCCCceeEEEeecCCcE---------------------EeeeccCcccCCceeEEEcccccEEEeeecCCc
Confidence            9 999999999999999999998332                     2223333345679999998  999999999999


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +.+||.-.++         .+..+.+|+..|.++..+|||  ..+++|+.|..++||.
T Consensus       297 c~vWDtlk~e---------~vg~L~GHeNRvScl~~s~DG--~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  297 CNVWDTLKGE---------RVGVLAGHENRVSCLGVSPDG--MAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeEeeccccc---------eEEEeeccCCeeEEEEECCCC--cEEEecchhHheeecC
Confidence            9999998776         678888999999999999999  7999999999999994

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=100.00  E-value=2.7e-39  Score=243.36  Aligned_cols=326  Identities=49%  Similarity=0.891  Sum_probs=276.3

Q ss_pred             cccceeeeeec-ccCCCceEEEEEEeec-CCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           19 KKREYRVTNKL-QEGKRPLYAVVFNFID-SRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        19 ~~~~~~~~~~~-~~h~~~v~~~~~~p~~-~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      .++.|+....+ ..|+.+|+.++|++.. -.....+|+.+.+.+.+|.......+..++.+..+.+.+..+.++|++...
T Consensus        23 ~k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   23 GKRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             CccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            37888888877 5688999999999622 123478999999999999998888888999999988999999999998765


Q ss_pred             -CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           97 -GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        97 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                       +..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|...++++++|.|..|++|++++..++..+....+|..
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence             5669999999999999999999999999999999999999998889999999999999999999999999998889999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEcc--ccceeeeeceeecCCCCC--CCCccceeceE-EEeecccceEEEEecC
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRWLG  250 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~i~~~~~~~  250 (346)
                      .|.++.|++ ++.++++++.|.+|++|++.  ......+.++.+...+..  ++......+.+ +...|.+.|.|+.|-|
T Consensus       183 eVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g  261 (385)
T KOG1034|consen  183 EVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG  261 (385)
T ss_pred             cEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh
Confidence            999999998 88999999999999999999  566667777666665554  66666666665 6678999999999999


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCC-----CCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      +++++-+-++.|..|..-..+..     +.......+.++..+.+.|+-+.|+-|...++||.|...|.|++||+...++
T Consensus       262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            99999999999999998322221     3334445677888888999999999887668999999999999999999887


Q ss_pred             ceeeeee-----eeEEEEEecCCCC
Q 019117          326 VLIARLI-----CFSLHVKYNPQSV  345 (346)
Q Consensus       326 ~~~~~~~-----~~~~~~~~spdg~  345 (346)
                      .....+.     ..+...+||-||+
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCc
Confidence            4332222     2367789998886

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-40  Score=257.27  Aligned_cols=249  Identities=20%  Similarity=0.375  Sum_probs=218.7

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      |.....+++|.++|+++.|++    ++.++++|+.++ |++|+.. .+.++.++.+    |.+.|.+++|+  |+.. .+
T Consensus       128 fnFEtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ah----h~eaIRdlafS--pnDs-kF  195 (464)
T KOG0284|consen  128 FNFETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQPN-MNNVKIIQAH----HAEAIRDLAFS--PNDS-KF  195 (464)
T ss_pred             eeHHHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEecccc-hhhhHHhhHh----hhhhhheeccC--CCCc-ee
Confidence            444445689999999999999    889999999999 9999954 3445555543    66899999888  6555 79


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++++.||+|+|||....+....+.+|.-.|.+++|+| ...++++|+.|..|++||.++++++.++.   +|...|..+.
T Consensus       196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~  271 (464)
T KOG0284|consen  196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVK  271 (464)
T ss_pred             EEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEE
Confidence            9999999999999999998889999999999999999 88899999999999999999999999998   8999999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV  258 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~  258 (346)
                      |+| ++++|++++.|..++++|++.                       ...++.+.+|...++++.|+   ..+|.+|+.
T Consensus       272 f~~-n~N~Llt~skD~~~kv~DiR~-----------------------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~  327 (464)
T KOG0284|consen  272 FNP-NGNWLLTGSKDQSCKVFDIRT-----------------------MKELFTYRGHKKDVTSLTWHPLNESLFTSGGS  327 (464)
T ss_pred             EcC-CCCeeEEccCCceEEEEehhH-----------------------hHHHHHhhcchhhheeeccccccccceeeccC
Confidence            999 889999999999999999997                       34577889999999999998   789999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ||.|..|.+...++        ....-.+|...|++++|+|-|  .+|++|+.|..+++|.-.
T Consensus       328 Dgsvvh~~v~~~~p--------~~~i~~AHd~~iwsl~~hPlG--hil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  328 DGSVVHWVVGLEEP--------LGEIPPAHDGEIWSLAYHPLG--HILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CCceEEEecccccc--------ccCCCcccccceeeeeccccc--eeEeecCCCcceeeeccC
Confidence            99999999985442        233335688999999999999  799999999999999754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-38  Score=248.99  Aligned_cols=272  Identities=19%  Similarity=0.329  Sum_probs=232.4

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeee-----ecCCCccceEEEEEEEcCCCCc
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSY-----VDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ..|..+|.+.+|+|.   ...++|+++.+- .++|++....    ....++..     ........|++++|+  .+|. 
T Consensus       175 l~~~~~V~~~~WnP~---~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--~~G~-  248 (524)
T KOG0273|consen  175 LRHESEVFICAWNPL---RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--NDGT-  248 (524)
T ss_pred             ccCCCceEEEecCch---hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--CCCC-
Confidence            349999999999993   234889988887 9999987511    11111110     111244679999998  8898 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      +||+|+.||.+++|+ ..+..+.++..|.++|.+++|+. .+++|++++.|+++.+||..+++..+.+.   -|..+-..
T Consensus       249 ~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~---~~s~~~lD  323 (524)
T KOG0273|consen  249 LLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFE---FHSAPALD  323 (524)
T ss_pred             eEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeee---eccCCccc
Confidence            999999999999999 46788889999999999999999 89999999999999999999999998888   57777688


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +.|-  +...+++++.|+.|+++.+..                       ..|+.++.+|.+.|.++.|+  +.+|++++
T Consensus       324 VdW~--~~~~F~ts~td~~i~V~kv~~-----------------------~~P~~t~~GH~g~V~alk~n~tg~LLaS~S  378 (524)
T KOG0273|consen  324 VDWQ--SNDEFATSSTDGCIHVCKVGE-----------------------DRPVKTFIGHHGEVNALKWNPTGSLLASCS  378 (524)
T ss_pred             eEEe--cCceEeecCCCceEEEEEecC-----------------------CCcceeeecccCceEEEEECCCCceEEEec
Confidence            8997  566799999999999999988                       66888999999999999999  89999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC-------cceEEEEcCCCcEEEEEcCCCCcceee-
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------YNAAAIGNREGKIFVWELQSSPPVLIA-  329 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~-  329 (346)
                      .|++++||+.....         ....+.+|...|..+.|+|++.       ...+++++.|+.|++||+..+.++..+ 
T Consensus       379 dD~TlkiWs~~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~  449 (524)
T KOG0273|consen  379 DDGTLKIWSMGQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM  449 (524)
T ss_pred             CCCeeEeeecCCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence            99999999987765         6788899999999999999874       258999999999999999999988876 


Q ss_pred             eeeeeEEEEEecCCCCC
Q 019117          330 RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       330 ~~~~~~~~~~~spdg~~  346 (346)
                      ++..+|.+++|||+|+|
T Consensus       450 kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             cCCCceEEEEecCCCcE
Confidence            77788999999999987

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-38  Score=225.85  Aligned_cols=267  Identities=21%  Similarity=0.325  Sum_probs=226.3

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      +....+..|+++|.++.|+-    +|++.++++.|. |++|+...+..++++..     |+.+|...+..  .|+. .++
T Consensus         8 kr~~~l~~~qgaV~avryN~----dGnY~ltcGsdrtvrLWNp~rg~liktYsg-----hG~EVlD~~~s--~Dns-kf~   75 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNV----DGNYCLTCGSDRTVRLWNPLRGALIKTYSG-----HGHEVLDAALS--SDNS-KFA   75 (307)
T ss_pred             hhceeecccccceEEEEEcc----CCCEEEEcCCCceEEeecccccceeeeecC-----CCceeeecccc--cccc-ccc
Confidence            34556789999999999998    899999999999 99999999999888875     77888877776  5666 899


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--CeeEEEecccCCCCcceEEE
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +|+.|..+.+||+++|+..+.+.+|.+.|+.++|+. +...+++|+.|.++++||.++  .++++.+.   .....|.++
T Consensus        76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQild---ea~D~V~Si  151 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILD---EAKDGVSSI  151 (307)
T ss_pred             cCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhh---hhcCceeEE
Confidence            999999999999999999999999999999999999 889999999999999999975  46777777   577889999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      ...   +..|++|+.||+++.||++.+..                         ....-..+|+|+.|+  ++..+.++.
T Consensus       152 ~v~---~heIvaGS~DGtvRtydiR~G~l-------------------------~sDy~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  152 DVA---EHEIVAGSVDGTVRTYDIRKGTL-------------------------SSDYFGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             Eec---ccEEEeeccCCcEEEEEeeccee-------------------------ehhhcCCcceeEEecCCCCEEEEeec
Confidence            885   46799999999999999998432                         222345678999998  899999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee--EE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF--SL  336 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~  336 (346)
                      |+++++.|-.+++         ++..+++|...-..+..+-......+++|++||.|++||+.....+......+.  +.
T Consensus       204 ~stlrLlDk~tGk---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~  274 (307)
T KOG0316|consen  204 DSTLRLLDKETGK---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVT  274 (307)
T ss_pred             cceeeecccchhH---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEE
Confidence            9999999999988         899999998766555444443336899999999999999999987777666654  46


Q ss_pred             EEEecCC
Q 019117          337 HVKYNPQ  343 (346)
Q Consensus       337 ~~~~spd  343 (346)
                      ++.+.|.
T Consensus       275 dl~~hp~  281 (307)
T KOG0316|consen  275 DLSCHPT  281 (307)
T ss_pred             eeecccC
Confidence            6777774

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.6e-40  Score=248.20  Aligned_cols=236  Identities=23%  Similarity=0.362  Sum_probs=208.7

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      ...+.|+|+.+.      ...+++|..|+ |+|||..+..+...+.+     |.+.|.|+.+.    .+ .+++|+.|.+
T Consensus       195 e~skgVYClQYD------D~kiVSGlrDnTikiWD~n~~~c~~~L~G-----HtGSVLCLqyd----~r-viisGSSDsT  258 (499)
T KOG0281|consen  195 ENSKGVYCLQYD------DEKIVSGLRDNTIKIWDKNSLECLKILTG-----HTGSVLCLQYD----ER-VIVSGSSDST  258 (499)
T ss_pred             ccCCceEEEEec------chhhhcccccCceEEeccccHHHHHhhhc-----CCCcEEeeecc----ce-EEEecCCCce
Confidence            345789999984      47899999998 99999888888887765     77888777664    45 9999999999


Q ss_pred             EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      |++||+++++++.++-+|...|..+.|+.   .++++++.|.++.+||+.....+.......+|...|+.+.|+   .++
T Consensus       259 vrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~ky  332 (499)
T KOG0281|consen  259 VRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKY  332 (499)
T ss_pred             EEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cce
Confidence            99999999999999999999999999975   799999999999999998766444333334899999999996   359


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~  269 (346)
                      +++++.|.+|++|++.+                       ...+.++.+|...|.|+.+.++++++|+.|.+|++||+..
T Consensus       333 IVsASgDRTikvW~~st-----------------------~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTST-----------------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             EEEecCCceEEEEeccc-----------------------eeeehhhhcccccceehhccCeEEEecCCCceEEEEeccc
Confidence            99999999999999999                       5678899999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +.         +++.+.+|+.-|.++.|..    +.+++|+.||+|++||+..+.
T Consensus       390 G~---------cLRvLeGHEeLvRciRFd~----krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  390 GA---------CLRVLEGHEELVRCIRFDN----KRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             cH---------HHHHHhchHHhhhheeecC----ceeeeccccceEEEEeccccc
Confidence            87         8999999999999999975    469999999999999998865

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-38  Score=240.94  Aligned_cols=250  Identities=20%  Similarity=0.325  Sum_probs=226.4

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ...++...|+||.+.|.+|+|+.    .|+++|+++.|- +.+||..+ -++++.+.+     |...|.+++|.  |.|.
T Consensus       138 ~tg~~e~~LrGHt~sv~di~~~a----~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-----h~h~vS~V~f~--P~gd  206 (406)
T KOG0295|consen  138 ETGELERSLRGHTDSVFDISFDA----SGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-----HEHGVSSVFFL--PLGD  206 (406)
T ss_pred             cchhhhhhhhccccceeEEEEec----CccEEEecCCccchhheeHHHHHHHHHHhcC-----cccceeeEEEE--ecCC
Confidence            34556788899999999999998    789999999998 99999876 344444443     77788888888  7787


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                       ++++++.|.+|+.|++.++-++.++.+|...|..++.+. ++.++++++.|.+|++|-+.++++...++   .|+-+|.
T Consensus       207 -~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vE  281 (406)
T KOG0295|consen  207 -HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVE  281 (406)
T ss_pred             -eeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh---ccccceE
Confidence             999999999999999999999999999999999999999 99999999999999999999999988998   7999999


Q ss_pred             EEEecCC--------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          179 SVDFHPS--------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       179 ~~~~~~~--------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      +++|.|.              ++.++.+++.|++|++||+..                       +..+.++.+|.++|.
T Consensus       282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-----------------------g~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-----------------------GMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----------------------CeEEEEEecccceee
Confidence            9999772              235899999999999999999                       678999999999999


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      .++|+  |+||+++..|+++++||+++.+         ++..+..|..-+++++|..+.  .++++|+-|..+++|..
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~---------cmk~~~ah~hfvt~lDfh~~~--p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVWDLKNLQ---------CMKTLEAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEEEeccce---------eeeccCCCcceeEEEecCCCC--ceEEeccccceeeeeec
Confidence            99999  9999999999999999999987         788888999999999999998  79999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.5e-39  Score=245.73  Aligned_cols=255  Identities=18%  Similarity=0.373  Sum_probs=223.5

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ...+.+...|.||++.|.|+.|..      +++++|+.|. |++||..++++++.+-.     |.+.|..+.|+   +| 
T Consensus       224 ~n~~~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tge~l~tlih-----HceaVLhlrf~---ng-  288 (499)
T KOG0281|consen  224 KNSLECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTGEPLNTLIH-----HCEAVLHLRFS---NG-  288 (499)
T ss_pred             cccHHHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCCchhhHHhh-----hcceeEEEEEe---CC-
Confidence            455778888999999999999964      7999999998 99999999999888764     77888888875   22 


Q ss_pred             cEEEEeecCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           99 PFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                       ++++++.|.++.+||+....   +.+.+.+|...|+.+.|+.   +++++++.|.+|++|++.+++.++++.   +|..
T Consensus       289 -~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~---gHkR  361 (499)
T KOG0281|consen  289 -YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLN---GHKR  361 (499)
T ss_pred             -EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhh---cccc
Confidence             89999999999999998764   4467789999999999964   699999999999999999999999999   8999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS  255 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  255 (346)
                      .|-|+.+   .++++++|+.|.+|++||+..                       +..+..+++|+.-|.|+.|+.+.+++
T Consensus       362 GIAClQY---r~rlvVSGSSDntIRlwdi~~-----------------------G~cLRvLeGHEeLvRciRFd~krIVS  415 (499)
T KOG0281|consen  362 GIACLQY---RDRLVVSGSSDNTIRLWDIEC-----------------------GACLRVLEGHEELVRCIRFDNKRIVS  415 (499)
T ss_pred             cceehhc---cCeEEEecCCCceEEEEeccc-----------------------cHHHHHHhchHHhhhheeecCceeee
Confidence            9999886   578999999999999999998                       66788999999999999999999999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      |+.||+|++||+.+..........-++..+..|.+.|..+.|..    ..+++++.|.+|.|||+.++.+-
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~----fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE----FQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc----eEEEeccCCCeEEEEEcCCCCcc
Confidence            99999999999998875544444446777888999999999864    46899999999999999988654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.4e-37  Score=261.41  Aligned_cols=277  Identities=21%  Similarity=0.372  Sum_probs=226.6

Q ss_pred             ccceeeeeecccC-CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcC
Q 019117           20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        20 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      ...+.+...+.+| ...|.++.|+|    +|..+++++.++ +++|+.....  ....+     ..|...|..++|+  |
T Consensus       145 ~~~~~~~~~~~~~~~~sv~~~~fs~----~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-----~~h~~~v~~~~fs--~  213 (456)
T KOG0266|consen  145 SRVFSLEQTLAGHECPSVTCVDFSP----DGRALAAASSDGLIRIWKLEGIKSNLLREL-----SGHTRGVSDVAFS--P  213 (456)
T ss_pred             cccceeeeeecccccCceEEEEEcC----CCCeEEEccCCCcEEEeecccccchhhccc-----cccccceeeeEEC--C
Confidence            3445555556555 78999999999    789999998888 9999986655  33333     3488889888887  9


Q ss_pred             CCCcEEEEeecCCeEEEEEc-cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           96 DGIPFLVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      +++ ++++++.|++|+|||+ ..+..++++++|...|++++|+| .++++++|+.|++|++||+++++++..+.   +|.
T Consensus       214 d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---~hs  288 (456)
T KOG0266|consen  214 DGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLK---GHS  288 (456)
T ss_pred             CCc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeee---ccC
Confidence            999 9999999999999999 55689999999999999999999 66999999999999999999999999999   899


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc--eEEEEec--C
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--G  250 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~--~  250 (346)
                      ..|++++|++ ++.+|++++.|+.|++||+.+....                     ....+..+...  ++++.|+  +
T Consensus       289 ~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~~fsp~~  346 (456)
T KOG0266|consen  289 DGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------------------CLKLLSGAENSAPVTSVQFSPNG  346 (456)
T ss_pred             CceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------------------eeecccCCCCCCceeEEEECCCC
Confidence            9999999998 9999999999999999999984321                     23344444444  8899998  8


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC---eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD---IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      .+++++..|+.+++||+....         .+..+.+|...   +.+..+++.+  .++++|+.|+.|++||+.++..+.
T Consensus       347 ~~ll~~~~d~~~~~w~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~i~sg~~d~~v~~~~~~s~~~~~  415 (456)
T KOG0266|consen  347 KYLLSASLDRTLKLWDLRSGK---------SVGTYTGHSNLVRCIFSPTLSTGG--KLIYSGSEDGSVYVWDSSSGGILQ  415 (456)
T ss_pred             cEEEEecCCCeEEEEEccCCc---------ceeeecccCCcceeEecccccCCC--CeEEEEeCCceEEEEeCCccchhh
Confidence            899999999999999999876         56666666553   3344455666  799999999999999999977665


Q ss_pred             eeeee--eeEEEEEecCCCC
Q 019117          328 IARLI--CFSLHVKYNPQSV  345 (346)
Q Consensus       328 ~~~~~--~~~~~~~~spdg~  345 (346)
                      .....  ..+..+.|+|..+
T Consensus       416 ~l~~h~~~~~~~~~~~~~~~  435 (456)
T KOG0266|consen  416 RLEGHSKAAVSDLSSHPTEN  435 (456)
T ss_pred             hhcCCCCCceeccccCCCcC
Confidence            44433  4456677777654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-36  Score=242.51  Aligned_cols=297  Identities=18%  Similarity=0.274  Sum_probs=235.1

Q ss_pred             ccccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC
Q 019117            3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED   81 (346)
Q Consensus         3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~   81 (346)
                      |.++|+......+..  -++|+...+++.|..-|+|+.|+|    ||.+||+++.|+ +.+||=.+++.+..+..  ...
T Consensus       162 Ri~T~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysP----DG~~Fat~gsDgki~iyDGktge~vg~l~~--~~a  233 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSP----DGSRFATAGSDGKIYIYDGKTGEKVGELED--SDA  233 (603)
T ss_pred             EEEeccCCCeEEEee--CCCeeeeecccccccceeeEEECC----CCCeEEEecCCccEEEEcCCCccEEEEecC--CCC
Confidence            566777777766664  566777788899999999999999    899999999999 99999999999888875  456


Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-----------------------------------------
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----------------------------------------  120 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------------------------  120 (346)
                      |.+.|++++|+  ||++ .+++++.|.+++|||+.+.++                                         
T Consensus       234 HkGsIfalsWs--PDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  234 HKGSIFALSWS--PDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             ccccEEEEEEC--CCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence            99999999998  9999 999999999999999866432                                         


Q ss_pred             --eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe-----------cccC----------------
Q 019117          121 --HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-----------AGAG----------------  171 (346)
Q Consensus       121 --~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~~~~----------------  171 (346)
                        .+.+.+|...|+++..+| ++.+|++|+.||.|.-|+..++..-+..           ....                
T Consensus       311 ~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~  389 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI  389 (603)
T ss_pred             ChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence              344567999999999999 7899999999999999998765332211           0000                


Q ss_pred             ---------------------------------------------------CCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117          172 ---------------------------------------------------GHRNEVLSVDFHPSDIYRIASCGMDNTVK  200 (346)
Q Consensus       172 ---------------------------------------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  200 (346)
                                                                         .-.....+++++| ++..++.|+.|+.|+
T Consensus       390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvh  468 (603)
T KOG0318|consen  390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVH  468 (603)
T ss_pred             ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEE
Confidence                                                               1112345677777 777888888888888


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      +|.+....                     .........|...|++++|+  +.+|+++...+.+.+||..+.+.      
T Consensus       469 vysl~g~~---------------------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~------  521 (603)
T KOG0318|consen  469 VYSLSGDE---------------------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV------  521 (603)
T ss_pred             EEEecCCc---------------------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce------
Confidence            88877622                     12334567799999999999  88999999999999999998763      


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce--eeeeeeeEEEEEecCC
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--IARLICFSLHVKYNPQ  343 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~spd  343 (346)
                        ....+..|...|.+++|+|+.  .++|+|+.|-.|.||+++.-....  .-.+...++.+.|--+
T Consensus       522 --~~~~w~FHtakI~~~aWsP~n--~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde  584 (603)
T KOG0318|consen  522 --KTNRWAFHTAKINCVAWSPNN--KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE  584 (603)
T ss_pred             --ecceeeeeeeeEEEEEeCCCc--eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC
Confidence              455666799999999999999  799999999999999998744322  1223344888888543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.7e-38  Score=261.93  Aligned_cols=207  Identities=22%  Similarity=0.380  Sum_probs=193.2

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ...++.||.++|+.+.|+|    +.++|+++++|. |++|.+.+...+...++     |..+|+.+.|+  |.|- |+|+
T Consensus       443 ~~~~L~GH~GPVyg~sFsP----d~rfLlScSED~svRLWsl~t~s~~V~y~G-----H~~PVwdV~F~--P~Gy-YFat  510 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSP----DRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-----HLAPVWDVQFA--PRGY-YFAT  510 (707)
T ss_pred             eeEEeecCCCceeeeeecc----cccceeeccCCcceeeeecccceeEEEecC-----CCcceeeEEec--CCce-EEEe
Confidence            4455899999999999999    779999999998 99999999888777764     78889999987  8898 9999


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      ++.|++-++|......+.+.+.+|.+.|.|+.|+| +..++++||.|.+|++||+.+|..++.|.   ||.++|.+++|+
T Consensus       511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~S  586 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFS  586 (707)
T ss_pred             cCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEc
Confidence            99999999999999999999999999999999999 99999999999999999999999999998   899999999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      | +|.+|++|+.||.|.+||+..                       +..+..+.+|.+.|.++.|+  |..|++|+.|++
T Consensus       587 p-~Gr~LaSg~ed~~I~iWDl~~-----------------------~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  587 P-CGRYLASGDEDGLIKIWDLAN-----------------------GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             C-CCceEeecccCCcEEEEEcCC-----------------------CcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence            9 999999999999999999999                       55677889999999999999  999999999999


Q ss_pred             EEEEcCCCCC
Q 019117          262 IVLWEPKMKE  271 (346)
Q Consensus       262 i~iwd~~~~~  271 (346)
                      |++||+....
T Consensus       643 V~lWD~~~~~  652 (707)
T KOG0263|consen  643 VRLWDLTKVI  652 (707)
T ss_pred             EEEEEchhhc
Confidence            9999987643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.4e-36  Score=275.22  Aligned_cols=277  Identities=22%  Similarity=0.326  Sum_probs=222.4

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC----ceee-eEeeeecCCCccceEEEEEEEcCC-CCcEE
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----GVIA-ALQSYVDEDKEESFYTVSWACNVD-GIPFL  101 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l  101 (346)
                      +..|.+.|.+++|+|    ++++||+|+.|+ |+||+....    .... .....   .+...+.+++|.  +. +. +|
T Consensus       479 ~~~~~~~V~~i~fs~----dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~--~~~~~-~l  548 (793)
T PLN00181        479 LLNSSNLVCAIGFDR----DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWN--SYIKS-QV  548 (793)
T ss_pred             ccCCCCcEEEEEECC----CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEec--cCCCC-EE
Confidence            445899999999999    789999999998 999997532    1100 01111   134567777776  43 45 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++++.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|++|++||++++..+..+.    +...+.++.
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----~~~~v~~v~  624 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----TKANICCVQ  624 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----cCCCeEEEE
Confidence            9999999999999999999999999999999999997578899999999999999999999888886    446899999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecC
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDN  260 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~  260 (346)
                      |++.++.++++|+.||.|++||++...                      .+...+..|...|.++.|. +.+|++++.|+
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~----------------------~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~  682 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPK----------------------LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDN  682 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCC----------------------ccceEecCCCCCEEEEEEeCCCEEEEEECCC
Confidence            976578999999999999999998721                      2345667899999999997 88999999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee----------
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----------  330 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------  330 (346)
                      +|++||+......   .....+..+.+|...+..++|+|++  .+|++|+.|+.|++|+.....+...+.          
T Consensus       683 ~ikiWd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~~~--~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        683 TLKLWDLSMSISG---INETPLHSFMGHTNVKNFVGLSVSD--GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             EEEEEeCCCCccc---cCCcceEEEcCCCCCeeEEEEcCCC--CEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence            9999999754210   0122567788899999999999998  799999999999999987665433221          


Q ss_pred             ----eeeeEEEEEecCCCCC
Q 019117          331 ----LICFSLHVKYNPQSVY  346 (346)
Q Consensus       331 ----~~~~~~~~~~spdg~~  346 (346)
                          ....+.+++|+|+|.+
T Consensus       758 ~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCCe
Confidence                1234889999999863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-36  Score=251.83  Aligned_cols=277  Identities=16%  Similarity=0.253  Sum_probs=233.2

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCC--cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~--~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (346)
                      .+.+.+++.+.-...+|..++|+.    .|+++|.|+..  .+.||++....-+...++     |-..+.+++++  |||
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~----tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-----H~~~i~~l~YS--pDg  362 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNS----TGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-----HSDRITSLAYS--PDG  362 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecc----cCCEEEEcCCccceEEEEEeeccceeeeccc-----cccceeeEEEC--CCC
Confidence            467888888887888999999998    78999999987  499999998877666664     66677777666  999


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      + ++|+|+.||.|+|||..++-+..++..|+..|+.+.|+. .++.+++.+-||+|+.||+...+.-+++..  ..+-..
T Consensus       363 q-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~--P~p~Qf  438 (893)
T KOG0291|consen  363 Q-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--PEPIQF  438 (893)
T ss_pred             c-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecC--CCceee
Confidence            9 999999999999999999999999999999999999999 899999999999999999999999999974  234566


Q ss_pred             EEEEecCCCCcEEEEEecCCe-EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      .|++..| .+.+++.|+.|.. |.+|++.+                       ++.+-.+.+|+++|.+++|+  ++.|+
T Consensus       439 scvavD~-sGelV~AG~~d~F~IfvWS~qT-----------------------GqllDiLsGHEgPVs~l~f~~~~~~La  494 (893)
T KOG0291|consen  439 SCVAVDP-SGELVCAGAQDSFEIFVWSVQT-----------------------GQLLDILSGHEGPVSGLSFSPDGSLLA  494 (893)
T ss_pred             eEEEEcC-CCCEEEeeccceEEEEEEEeec-----------------------CeeeehhcCCCCcceeeEEccccCeEE
Confidence            7899998 8999999998874 99999999                       45677899999999999998  89999


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee----
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----  330 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----  330 (346)
                      ++++|.+||+||+-....        .+.++. +...+..++|.|||  +.|++++.||.|.+||.+.+..+..+.    
T Consensus       495 S~SWDkTVRiW~if~s~~--------~vEtl~-i~sdvl~vsfrPdG--~elaVaTldgqItf~d~~~~~q~~~IdgrkD  563 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSSG--------TVETLE-IRSDVLAVSFRPDG--KELAVATLDGQITFFDIKEAVQVGSIDGRKD  563 (893)
T ss_pred             eccccceEEEEEeeccCc--------eeeeEe-eccceeEEEEcCCC--CeEEEEEecceEEEEEhhhceeeccccchhh
Confidence            999999999999977631        222222 34589999999999  689999999999999998765331111    


Q ss_pred             e-----------------eeeEEEEEecCCCCC
Q 019117          331 L-----------------ICFSLHVKYNPQSVY  346 (346)
Q Consensus       331 ~-----------------~~~~~~~~~spdg~~  346 (346)
                      +                 ....+.+++|+||.+
T Consensus       564 ~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~  596 (893)
T KOG0291|consen  564 LSGGRKETDRITAENSAKGKTFTTICYSADGKC  596 (893)
T ss_pred             ccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence            0                 112467999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.9e-36  Score=241.84  Aligned_cols=270  Identities=25%  Similarity=0.410  Sum_probs=227.0

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ..++++|.++|++++|+|    ++++|++++.++ +.+|+..++.....+..     +...+..+.|.  ++++ +++++
T Consensus         2 ~~~~~~h~~~i~~~~~~~----~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~--~~~~-~l~~~   69 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSP----DGKLLATGSGDGTIKVWDLETGELLRTLKG-----HTGPVRDVAAS--ADGT-YLASG   69 (289)
T ss_pred             chHhcccCCCEEEEEEcC----CCCEEEEeecCcEEEEEEeeCCCcEEEEec-----CCcceeEEEEC--CCCC-EEEEE
Confidence            356789999999999999    678999999777 99999988775555543     55566566665  8887 99999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      +.+|.|++|++.+++.+..+..|...+.++.|++ ++.++++++.|+.|.+||+++++....+.   .|...+.+++|+|
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~  145 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSP  145 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcC
Confidence            9999999999999888888889999999999999 67888888889999999999888888887   6889999999998


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI  262 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i  262 (346)
                       ++.++++++.|+.|++||++.                       ......+..|...+.++.|+  ++.+++++.|+.|
T Consensus       146 -~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         146 -DGTFVASSSQDGTIKLWDLRT-----------------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             -cCCEEEEEcCCCcEEEEEccc-----------------------cccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence             788888888899999999986                       33455666788899999998  5589999999999


Q ss_pred             EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEec
Q 019117          263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYN  341 (346)
Q Consensus       263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s  341 (346)
                      ++||++..+         .+..+..|...+.+++|+|++  .++++++.||.|++||+.++++..... ....+.+++|+
T Consensus       202 ~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~  270 (289)
T cd00200         202 KLWDLSTGK---------CLGTLRGHENGVNSVAFSPDG--YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS  270 (289)
T ss_pred             EEEECCCCc---------eecchhhcCCceEEEEEcCCC--cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC
Confidence            999998765         556666777899999999996  688888889999999999877655443 33458899999


Q ss_pred             CCCCC
Q 019117          342 PQSVY  346 (346)
Q Consensus       342 pdg~~  346 (346)
                      |++++
T Consensus       271 ~~~~~  275 (289)
T cd00200         271 PDGKR  275 (289)
T ss_pred             CCCCE
Confidence            98763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-37  Score=223.90  Aligned_cols=265  Identities=18%  Similarity=0.322  Sum_probs=219.7

Q ss_pred             eEEEEEEeecCCCccEEEEEc--------CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           36 LYAVVFNFIDSRYFNVFATVG--------GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~--------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      =+++.|||.-.   ++||.+.        .+.+.|.+....+.+..++.+.   ..+.+..++|+.+.+  +.+++++.|
T Consensus        11 GysvqfSPf~~---nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d---~~D~LfdV~Wse~~e--~~~~~a~GD   82 (311)
T KOG0277|consen   11 GYSVQFSPFVE---NRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD---TEDGLFDVAWSENHE--NQVIAASGD   82 (311)
T ss_pred             cceeEeccccc---chhheeehhhcccccCceEEEEecCCCCCeEEEEeee---cccceeEeeecCCCc--ceEEEEecC
Confidence            46889999542   3333332        2338999987777777777664   567889999995444  478899999


Q ss_pred             CeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      |++++||+... .++..++.|...|.++.|++.....+++++.|++|++|+...++.+.++.   +|...|...+|+|..
T Consensus        83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~---gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN---GHNSCIYQAAFSPHI  159 (311)
T ss_pred             ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---CCccEEEEEecCCCC
Confidence            99999996443 57889999999999999999888899999999999999999999999999   899999999999999


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIV  263 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~  263 (346)
                      .+++++++.|+.+++||++..                       .....+..|...|.|+.|+   .+.++||+.|+.|+
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~-----------------------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSP-----------------------GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             CCeEEEccCCceEEEEEecCC-----------------------CceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence            999999999999999999982                       2233488899999999998   77999999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc-cee-eeeeeeEEEEEec
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-VLI-ARLICFSLHVKYN  341 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~s  341 (346)
                      .||++..+.        ++..+.+|.-.|..++|||... .+|++++.|-+++|||...+.- +.. ..+...+..+.||
T Consensus       217 ~wDir~~r~--------pl~eL~gh~~AVRkvk~Sph~~-~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws  287 (311)
T KOG0277|consen  217 GWDIRNLRT--------PLFELNGHGLAVRKVKFSPHHA-SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWS  287 (311)
T ss_pred             EEehhhccc--------cceeecCCceEEEEEecCcchh-hHhhhccccceEEecccccchhhhhhhhccceEEeccccc
Confidence            999998763        7888899999999999999876 7999999999999999986543 223 3445567778887


Q ss_pred             CC
Q 019117          342 PQ  343 (346)
Q Consensus       342 pd  343 (346)
                      +-
T Consensus       288 ~~  289 (311)
T KOG0277|consen  288 LF  289 (311)
T ss_pred             cc
Confidence            63

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-37  Score=258.62  Aligned_cols=292  Identities=17%  Similarity=0.249  Sum_probs=243.5

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      .|.....+|..++|+|    ...++.++--.+ |.+||..-+..+..+..     |+++|..++|.  |.+. ++++|+.
T Consensus         4 kfEskSsRvKglsFHP----~rPwILtslHsG~IQlWDYRM~tli~rFde-----HdGpVRgv~FH--~~qp-lFVSGGD   71 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHP----KRPWILTSLHSGVIQLWDYRMGTLIDRFDE-----HDGPVRGVDFH--PTQP-LFVSGGD   71 (1202)
T ss_pred             hhhcccccccceecCC----CCCEEEEeecCceeeeehhhhhhHHhhhhc-----cCCccceeeec--CCCC-eEEecCC
Confidence            3455678899999999    556888887777 99999999888887764     88899888876  8887 9999999


Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      |-.|++|+..+.+++.++.+|-+.|..+.|++ .-.+++++|+|.+|+||++.+++++..+.   +|...|.|..|+| .
T Consensus        72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavlt---GHnHYVMcAqFhp-t  146 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLT---GHNHYVMCAQFHP-T  146 (1202)
T ss_pred             ccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEe---cCceEEEeeccCC-c
Confidence            99999999999999999999999999999999 88999999999999999999999999999   8999999999999 8


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC------CCCccceeceEEEeecccceEEEEecC--CEEEEEee
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK------FPTKYVQFPVFIASVHSNYVDCNRWLG--DFILSKSV  258 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~  258 (346)
                      ..++++++-|.+|++||+...+.....+.........      ..........+.+.+|...|.-++|++  -++++|+.
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            8999999999999999998855433332221111111      111112233467889999999999996  68999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLH  337 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~  337 (346)
                      |..|++|.++..+.       -.+.+..+|.+.|.++-|+|..  .++++.|+|++|+|||+...+.++.++.. ..-+.
T Consensus       227 DRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q--~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~  297 (1202)
T KOG0292|consen  227 DRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ--DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI  297 (1202)
T ss_pred             cceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc--ceeEecCCCccEEEEecccccceeeeeccCCeEEE
Confidence            99999999987652       2467788999999999999988  79999999999999999998888877543 44677


Q ss_pred             EEecCCCC
Q 019117          338 VKYNPQSV  345 (346)
Q Consensus       338 ~~~spdg~  345 (346)
                      ++-.|...
T Consensus       298 laahP~lN  305 (1202)
T KOG0292|consen  298 LAAHPELN  305 (1202)
T ss_pred             EEecCCcc
Confidence            77777654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-37  Score=225.36  Aligned_cols=256  Identities=19%  Similarity=0.360  Sum_probs=213.5

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      +.......+. -.+.+++|+|++.   ..+.++++++|| ++|||+.  .....+..+  .+|..+|.++.|.  +..+.
T Consensus        49 ~gi~e~~s~d-~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~~--~~s~Pi~~~--kEH~~EV~Svdwn--~~~r~  118 (311)
T KOG0277|consen   49 KGIQECQSYD-TEDGLFDVAWSEN---HENQVIAASGDGSLRLFDLT--MPSKPIHKF--KEHKREVYSVDWN--TVRRR  118 (311)
T ss_pred             CCeEEEEeee-cccceeEeeecCC---CcceEEEEecCceEEEeccC--CCCcchhHH--HhhhhheEEeccc--cccce
Confidence            3344444432 4577999999983   456777777777 9999943  333344333  2488999999998  44444


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      .+++++.|++|++|+...++.+.++.+|..-|...+|+|..++++++++.|+++++||++.......+.   .|...+.+
T Consensus       119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~---ah~~Eil~  195 (311)
T KOG0277|consen  119 IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE---AHNSEILC  195 (311)
T ss_pred             eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE---eccceeEe
Confidence            788889999999999999999999999999999999999999999999999999999998654444466   69999999


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEE
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK  256 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~  256 (346)
                      +.|+..+.+.++||+.|+.|+.||+++.                      ..|+..+.+|.-.|+.+.|+   ...|+++
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~----------------------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa  253 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNL----------------------RTPLFELNGHGLAVRKVKFSPHHASLLASA  253 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhc----------------------cccceeecCCceEEEEEecCcchhhHhhhc
Confidence            9999988999999999999999999994                      45788999999999999999   5689999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      +.|-+++|||...+.        ..+.++..|..-+..+.||+-.. .++|+++.|+.++||+-
T Consensus       254 sYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~-~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  254 SYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFDP-GQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccceEEecccccch--------hhhhhhhccceEEeccccccccC-ceeeecccccceeeecc
Confidence            999999999998654        26777888998999999999754 69999999999999984

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=225.12  Aligned_cols=270  Identities=19%  Similarity=0.304  Sum_probs=226.0

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ..+.+|+.|+++|++++.+|    +.+++|||+.|. -.+|+..++.....+..     |++.|.++.|+  .+|. +||
T Consensus        55 dS~~tF~~H~~svFavsl~P----~~~l~aTGGgDD~AflW~~~~ge~~~eltg-----HKDSVt~~~Fs--hdgt-lLA  122 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHP----NNNLVATGGGDDLAFLWDISTGEFAGELTG-----HKDSVTCCSFS--HDGT-LLA  122 (399)
T ss_pred             cceeehhhcCCceEEEEeCC----CCceEEecCCCceEEEEEccCCcceeEecC-----CCCceEEEEEc--cCce-EEE
Confidence            34678899999999999999    678999999888 99999999986666554     88899888877  8899 999


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      +|+.+|.|+||+..++.....+...-..+.-+.|+| ....|++|+.||.+.+|.+.++...+.+.   +|..++++=.|
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~---Gh~~~ct~G~f  198 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMS---GHNSPCTCGEF  198 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEec---CCCCCcccccc
Confidence            999999999999999998888876777899999999 99999999999999999999888888888   89999999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeecee------ecC-------------------------------CC---C
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT------WTD-------------------------------LP---S  222 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~-------------------------------~~---~  222 (346)
                      .| +|+.++++..||+|++|++.+.+......-.      ...                               .+   .
T Consensus       199 ~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~  277 (399)
T KOG0296|consen  199 IP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE  277 (399)
T ss_pred             cC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence            99 8999999999999999999986543332200      000                               00   0


Q ss_pred             C-------------------CC-------------CccceeceEEEeecccceEEEEecC-CEEEEEeecCeEEEEcCCC
Q 019117          223 K-------------------FP-------------TKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       223 ~-------------------~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~  269 (346)
                      .                   ++             .......++..-.|+..|..+.|.+ .+|++++.+|.|+.||.++
T Consensus       278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt  357 (399)
T KOG0296|consen  278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART  357 (399)
T ss_pred             ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc
Confidence            0                   00             0000011334456888999999985 8999999999999999999


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++         ++..+.+|...|.+++++|+.  ++++++|.|+..+||++.
T Consensus       358 G~---------l~~~y~GH~~~Il~f~ls~~~--~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  358 GQ---------LKFTYTGHQMGILDFALSPQK--RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cc---------eEEEEecCchheeEEEEcCCC--cEEEEecCCCeEEEEecC
Confidence            98         899999999999999999998  799999999999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-36  Score=239.22  Aligned_cols=265  Identities=19%  Similarity=0.335  Sum_probs=228.4

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .++|.+++|+|.+|   .-+|++++-++.||+..+....+.+..|     ...+++++|.  .||+ +|++|...|.|+|
T Consensus        26 ~~~vssl~fsp~~P---~d~aVt~S~rvqly~~~~~~~~k~~srF-----k~~v~s~~fR--~DG~-LlaaGD~sG~V~v   94 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHP---YDFAVTSSVRVQLYSSVTRSVRKTFSRF-----KDVVYSVDFR--SDGR-LLAAGDESGHVKV   94 (487)
T ss_pred             cCcceeEecCCCCC---CceEEecccEEEEEecchhhhhhhHHhh-----ccceeEEEee--cCCe-EEEccCCcCcEEE
Confidence            46799999999655   5688888888999999888887777764     4567777777  8999 9999999999999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      +|+.+...++.+.+|..+|..+.|+|.++..|++|++|+.+++||+.+......+.   +|+..|+|.+|+|.++.+++|
T Consensus        95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---~htDYVR~g~~~~~~~hivvt  171 (487)
T KOG0310|consen   95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---GHTDYVRCGDISPANDHIVVT  171 (487)
T ss_pred             eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---CCcceeEeeccccCCCeEEEe
Confidence            99888778899999999999999999889999999999999999999888755676   899999999999977889999


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      |+.||.|++||++..                       .....--.|..+|..+.+-  |..+++++. ..|++||+-++
T Consensus       172 GsYDg~vrl~DtR~~-----------------------~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G  227 (487)
T KOG0310|consen  172 GSYDGKVRLWDTRSL-----------------------TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG  227 (487)
T ss_pred             cCCCceEEEEEeccC-----------------------CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC
Confidence            999999999999982                       1222333588889888886  577777765 57999999976


Q ss_pred             CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      .+        .+.....|...|+|+++..++  ..|++++-|+.+++||+.+.+.+....+++++.+++.+||++
T Consensus       228 ~q--------ll~~~~~H~KtVTcL~l~s~~--~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  228 GQ--------LLTSMFNHNKTVTCLRLASDS--TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ  292 (487)
T ss_pred             ce--------ehhhhhcccceEEEEEeecCC--ceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence            53        555556688999999999998  789999999999999999998889999999999999999875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.2e-37  Score=242.66  Aligned_cols=271  Identities=14%  Similarity=0.240  Sum_probs=218.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      -+....+.||+..|+++.|.|   ..+.+|++++.|+ |+||++.. +++++.+..     |..+|..++|+  ++|. .
T Consensus       204 kk~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-----H~k~Vrd~~~s--~~g~-~  272 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-----HRKPVRDASFN--NCGT-S  272 (503)
T ss_pred             HhheeeccCCccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhc-----chhhhhhhhcc--ccCC-e
Confidence            356778899999999999999   3578999999999 99999987 667777765     77888888887  8898 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +++++.|+.|++||+++|+++..+. ....++|+.|+|++.+.|++|+.|+.|+.||+++++.++.+.   .|-+.|..+
T Consensus       273 fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hLg~i~~i  348 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHLGAILDI  348 (503)
T ss_pred             eeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhhhheeee
Confidence            9999999999999999999999887 456789999999766999999999999999999999999998   699999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeee---------ceeecCCCCCCCCccceec--------------eEEEe
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK---------SFTWTDLPSKFPTKYVQFP--------------VFIAS  237 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--------------~~~~~  237 (346)
                      .|-+ ++..+++.+.|++++||+.+..-..-..         .+.......-+..+.....              ...+.
T Consensus       349 ~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe  427 (503)
T KOG0282|consen  349 TFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE  427 (503)
T ss_pred             EEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence            9998 9999999999999999999873211100         0000000000000111111              11223


Q ss_pred             ecc--cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117          238 VHS--NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  313 (346)
Q Consensus       238 ~~~--~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  313 (346)
                      +|.  +.-..+.|+  |.+|++|+.||.+.+||.++-+         .+..++.|.+++..+.|+|... ..+|+|+.||
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------l~~~lkah~~~ci~v~wHP~e~-Skvat~~w~G  497 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------LVSKLKAHDQPCIGVDWHPVEP-SKVATCGWDG  497 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------hhhccccCCcceEEEEecCCCc-ceeEecccCc
Confidence            343  334556777  8899999999999999999887         7889999999999999999876 6899999999


Q ss_pred             cEEEEE
Q 019117          314 KIFVWE  319 (346)
Q Consensus       314 ~i~iwd  319 (346)
                      .|++||
T Consensus       498 ~Ikiwd  503 (503)
T KOG0282|consen  498 LIKIWD  503 (503)
T ss_pred             eeEecC
Confidence            999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-36  Score=249.58  Aligned_cols=249  Identities=20%  Similarity=0.302  Sum_probs=215.3

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      .+.||.+.|.++....    +|.+|++|+.|. +++|.+.++.... ...-....|...|.+++++  ..+..+|++++.
T Consensus       360 ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~~-~~~a~~~gH~~svgava~~--~~~asffvsvS~  432 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSKS-LCVAQANGHTNSVGAVAGS--KLGASFFVSVSQ  432 (775)
T ss_pred             EEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcchh-hhhhhhcccccccceeeec--ccCccEEEEecC
Confidence            5689999999999333    578999999999 9999884433221 1112223588899988885  666669999999


Q ss_pred             CCeEEEEEccCcce-----e----eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          107 NGIIRVIDVSNEKL-----H----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       107 dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      |+++++|++...+.     +    .+...|...|++++++| +..+++|||.|.+.+||+++.......+.   +|...|
T Consensus       433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLs---GH~RGv  508 (775)
T KOG0319|consen  433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLS---GHTRGV  508 (775)
T ss_pred             CceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEee---CCccce
Confidence            99999999876221     1    23357999999999999 89999999999999999999999999999   899999


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      .++.|+| ....++|++.|++|+||.+.+                       ..++.++.+|...|..+.|-  +..|++
T Consensus       509 w~V~Fs~-~dq~laT~SgD~TvKIW~is~-----------------------fSClkT~eGH~~aVlra~F~~~~~qliS  564 (775)
T KOG0319|consen  509 WCVSFSK-NDQLLATCSGDKTVKIWSIST-----------------------FSCLKTFEGHTSAVLRASFIRNGKQLIS  564 (775)
T ss_pred             EEEEecc-ccceeEeccCCceEEEEEecc-----------------------ceeeeeecCccceeEeeeeeeCCcEEEe
Confidence            9999999 889999999999999999999                       45788999999999999997  899999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      ++.||-|++|++++++         ++.++..|+..|++++-++..  .++++|+.||.|.+|.=-+
T Consensus       565 ~~adGliKlWnikt~e---------C~~tlD~H~DrvWaL~~~~~~--~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  565 AGADGLIKLWNIKTNE---------CEMTLDAHNDRVWALSVSPLL--DMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             ccCCCcEEEEeccchh---------hhhhhhhccceeEEEeecCcc--ceeEecCCCeEEEEeecCc
Confidence            9999999999999987         899999999999999999999  6899999999999996444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9e-35  Score=241.23  Aligned_cols=265  Identities=22%  Similarity=0.367  Sum_probs=226.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-  107 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-  107 (346)
                      ......|+|.+|++    .-.+||++-..+ ..+|.+..-..++.+..     ...+|..++|.  ..|. .||.|+.. 
T Consensus       262 n~~~~kvtaa~fH~----~t~~lvvgFssG~f~LyelP~f~lih~LSi-----s~~~I~t~~~N--~tGD-WiA~g~~kl  329 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHK----GTNLLVVGFSSGEFGLYELPDFNLIHSLSI-----SDQKILTVSFN--STGD-WIAFGCSKL  329 (893)
T ss_pred             cccccceeeeeccC----CceEEEEEecCCeeEEEecCCceEEEEeec-----ccceeeEEEec--ccCC-EEEEcCCcc
Confidence            33447899999999    568999999999 77999888777777764     45677777776  6687 89888765 


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.+-||++.+...+...++|...+++++++| +++++++|++||.|+|||..++-+..+|.   .|.+.|+.+.|+. .+
T Consensus       330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt---eHts~Vt~v~f~~-~g  404 (893)
T KOG0291|consen  330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT---EHTSGVTAVQFTA-RG  404 (893)
T ss_pred             ceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec---cCCCceEEEEEEe-cC
Confidence            8999999999999999999999999999999 99999999999999999999999999999   7999999999997 99


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec--CCEEEEEeecC-eEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDN-EIV  263 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~~d~-~i~  263 (346)
                      +.+++.+.||+|+.||+.....                       .+++.. .+-...|++.+  |.++.+|+.|. .|.
T Consensus       405 ~~llssSLDGtVRAwDlkRYrN-----------------------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~If  461 (893)
T KOG0291|consen  405 NVLLSSSLDGTVRAWDLKRYRN-----------------------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF  461 (893)
T ss_pred             CEEEEeecCCeEEeeeecccce-----------------------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence            9999999999999999988332                       222221 22234566666  88888888875 499


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC-CcceeeeeeeeEEEEEecC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~sp  342 (346)
                      +|++++++         .+..+.+|+++|.+++|+|++  ..|+++|.|.+|++||+-.. ..+....+...+..++|+|
T Consensus       462 vWS~qTGq---------llDiLsGHEgPVs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP  530 (893)
T KOG0291|consen  462 VWSVQTGQ---------LLDILSGHEGPVSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP  530 (893)
T ss_pred             EEEeecCe---------eeehhcCCCCcceeeEEcccc--CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC
Confidence            99999998         899999999999999999999  79999999999999998775 3456777888899999999


Q ss_pred             CCC
Q 019117          343 QSV  345 (346)
Q Consensus       343 dg~  345 (346)
                      ||+
T Consensus       531 dG~  533 (893)
T KOG0291|consen  531 DGK  533 (893)
T ss_pred             CCC
Confidence            996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.8e-34  Score=228.35  Aligned_cols=326  Identities=18%  Similarity=0.236  Sum_probs=245.9

Q ss_pred             ccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc---EEEEEeccCceeeeEeeeecCC
Q 019117            5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDED   81 (346)
Q Consensus         5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~~   81 (346)
                      |.|+......+-........+..+++.-.++|.+++|++    ++++++..++++   .++|-..+|..+..+.+     
T Consensus        75 ASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~----ds~RI~avGEGrerfg~~F~~DSG~SvGei~G-----  145 (603)
T KOG0318|consen   75 ASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF----DSKRIAAVGEGRERFGHVFLWDSGNSVGEITG-----  145 (603)
T ss_pred             eecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC----CCcEEEEEecCccceeEEEEecCCCccceeec-----
Confidence            334444443444444556677777888899999999998    677777777664   44444457777777775     


Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      |...+.++.|-  |.....+++|+.|++|.+|+-.--+...++..|...|.++.|+| ++.+|++++.||++.+||-.++
T Consensus       146 hSr~ins~~~K--psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  146 HSRRINSVDFK--PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             cceeEeeeecc--CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc
Confidence            77788888877  55555799999999999999777777888899999999999999 8999999999999999999999


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec-----------C----------C
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------D----------L  220 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~----------~  220 (346)
                      +.+..+....+|.+.|.+++|+| ++..++|++.|.+++|||+...+......+...           .          .
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~  301 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT  301 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence            99999987778999999999999 999999999999999999988533222111111           0          0


Q ss_pred             CCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC--ccccc---------------
Q 019117          221 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADI---------------  281 (346)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~---------------  281 (346)
                      .. +.......++..+.+|...|+++..+  +.+|++|+.||.|.-|+..++...+..  .+...               
T Consensus       302 in-~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~  380 (603)
T KOG0318|consen  302 IN-YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI  380 (603)
T ss_pred             EE-EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence            00 11122223677889999999999998  789999999999999998776432110  00000               


Q ss_pred             -----------------------------------------------cccccC--------CCcCeeEEEEeecCCcceE
Q 019117          282 -----------------------------------------------LQKYPV--------PECDIWFIKFSCDFHYNAA  306 (346)
Q Consensus       282 -----------------------------------------------~~~~~~--------~~~~v~~~~~s~~~~~~~l  306 (346)
                                                                     +.-++.        ..-...+++++|++  ..+
T Consensus       381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~v  458 (603)
T KOG0318|consen  381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEV  458 (603)
T ss_pred             ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEE
Confidence                                                           000000        11235678899998  789


Q ss_pred             EEEcCCCcEEEEEcCCCCcc---eeeeeeeeEEEEEecCCCCC
Q 019117          307 AIGNREGKIFVWELQSSPPV---LIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       307 ~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~spdg~~  346 (346)
                      +.|+.||.|+||.+..++..   ....+.+.++.++|||||.|
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence            99999999999999987643   34566677999999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.3e-35  Score=247.53  Aligned_cols=247  Identities=26%  Similarity=0.452  Sum_probs=211.7

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+...+.+|...|++++|+|    ++.++++++.|. |+|||+. .+..++.+..     |...|++++|.  |+|+ ++
T Consensus       194 ~~~~~l~~h~~~v~~~~fs~----d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~--p~g~-~i  261 (456)
T KOG0266|consen  194 NLLRELSGHTRGVSDVAFSP----DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFS--PDGN-LL  261 (456)
T ss_pred             hhhccccccccceeeeEECC----CCcEEEEecCCceEEEeeccCCCeEEEEecC-----CCCceEEEEec--CCCC-EE
Confidence            46667789999999999999    788999999999 9999994 4466677764     77788777776  9996 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe--eEEEecccCCCCc--ce
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRN--EV  177 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~--~v  177 (346)
                      ++|+.|++|+|||+++++++..+.+|.+.|++++|++ ++.+|++++.|+.|++||+.++.  ++..+.   ++..  ++
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~  337 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLS---GAENSAPV  337 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeeccc---CCCCCCce
Confidence            9999999999999999999999999999999999999 89999999999999999999998  456666   3433  59


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE---Eec--CCE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN---RWL--GDF  252 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~--~~~  252 (346)
                      +++.|+| ++.++++++.|+.+++||++.                       ...+.....|...+.|+   ...  +.+
T Consensus       338 ~~~~fsp-~~~~ll~~~~d~~~~~w~l~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  338 TSVQFSP-NGKYLLSASLDRTLKLWDLRS-----------------------GKSVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             eEEEECC-CCcEEEEecCCCeEEEEEccC-----------------------CcceeeecccCCcceeEecccccCCCCe
Confidence            9999999 999999999999999999998                       34455666666654333   112  889


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQ  321 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~  321 (346)
                      +++|+.|+.|.+||+.+..         .+..+.+| ...+..+.++|..  .++++++  .|+.+++|...
T Consensus       394 i~sg~~d~~v~~~~~~s~~---------~~~~l~~h~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  394 IYSGSEDGSVYVWDSSSGG---------ILQRLEGHSKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEEeCCceEEEEeCCccc---------hhhhhcCCCCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence            9999999999999999866         78888888 8889999999998  6888888  78999999754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.6e-35  Score=228.61  Aligned_cols=281  Identities=18%  Similarity=0.263  Sum_probs=228.7

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee-eEee------e----ec--CCCccceEEEEEE
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-ALQS------Y----VD--EDKEESFYTVSWA   92 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~-~~~~------~----~~--~~~~~~v~~~~~~   92 (346)
                      ..+..|.-+|.+|+++|    +..+..+++.++ |.=|+..++.... .+..      +    ..  ..|...+.+++.+
T Consensus       136 ~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             eeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            45578999999999999    678999999998 9999988877441 1111      1    01  1355566555555


Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                        +||+ ||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-. +...+++++.|++|++|+++....+.++-   +
T Consensus       212 --~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetly---G  284 (479)
T KOG0299|consen  212 --SDGK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLY---G  284 (479)
T ss_pred             --CCCc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHh---C
Confidence              9999 999999999999999999999999999999999999998 88999999999999999999888888887   8


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CC
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD  251 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  251 (346)
                      |+..|.++.... .++.+-+|+.|+++++|++..                        .....+.+|...+.|++|- ..
T Consensus       285 Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e------------------------esqlifrg~~~sidcv~~In~~  339 (479)
T KOG0299|consen  285 HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE------------------------ESQLIFRGGEGSIDCVAFINDE  339 (479)
T ss_pred             Cccceeeechhc-ccceEEeccccceeEEEeccc------------------------cceeeeeCCCCCeeeEEEeccc
Confidence            999999999885 667666677999999999965                        2334567788899999997 88


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC----C
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS----P  324 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~----~  324 (346)
                      .+++|+.+|.|.+|++...++.........+...   ..+..+|++++..|..  .++++|+.+|.|++|-+.++    +
T Consensus       340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s--dL~asGS~~G~vrLW~i~~g~r~i~  417 (479)
T KOG0299|consen  340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS--DLLASGSWSGCVRLWKIEDGLRAIN  417 (479)
T ss_pred             ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC--ceEEecCCCCceEEEEecCCccccc
Confidence            9999999999999999988754332222222222   1122489999999988  79999999999999999988    3


Q ss_pred             cceeeeeeeeEEEEEecCCCC
Q 019117          325 PVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       325 ~~~~~~~~~~~~~~~~spdg~  345 (346)
                      ++....+.+.+++++|+++|+
T Consensus       418 ~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  418 LLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             eeeecccccEEEEEEEccCCC
Confidence            455667788999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8e-35  Score=240.86  Aligned_cols=279  Identities=15%  Similarity=0.214  Sum_probs=231.9

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ..+.++.+.+-|..+.|.+++|--   +..+.||+++... +++|++.+..+. .+     ++|.+.|.++...  .+|-
T Consensus       310 ~~~l~i~k~ivG~ndEI~Dm~~lG---~e~~~laVATNs~~lr~y~~~~~~c~-ii-----~GH~e~vlSL~~~--~~g~  378 (775)
T KOG0319|consen  310 EDELTIVKQIVGYNDEILDMKFLG---PEESHLAVATNSPELRLYTLPTSYCQ-II-----PGHTEAVLSLDVW--SSGD  378 (775)
T ss_pred             ccccEEehhhcCCchhheeeeecC---CccceEEEEeCCCceEEEecCCCceE-EE-----eCchhheeeeeec--ccCc
Confidence            466778888999999999999874   1457888887776 999987776654 33     3488999888844  5566


Q ss_pred             cEEEEeecCCeEEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE---Eec---
Q 019117           99 PFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL---IFA---  168 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~---  168 (346)
                       +|++|+.|.++++|.++++.    ++....+|+..|.+++++.....+|+++|.|+++++|++...+...   .+.   
T Consensus       379 -llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  379 -LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             -EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence             99999999999999885443    4566678999999999988778899999999999999997622111   110   


Q ss_pred             ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW  248 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  248 (346)
                      ....|...|++++.+| +..+++||+.|.+.++|++..                       ......+.+|...|.|+.|
T Consensus       458 t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~-----------------------~~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ-----------------------LRLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             HHHhhcccccceEecC-CCceEEecccccceeeecccC-----------------------ceEEEEeeCCccceEEEEe
Confidence            1126999999999999 899999999999999999997                       3457789999999999999


Q ss_pred             c--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       249 ~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      +  .+.++|+|.|++|+||.+.+..         +++++.+|...|..+.|-.++  ..|++++.||.|++|++++++..
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fS---------ClkT~eGH~~aVlra~F~~~~--~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFS---------CLKTFEGHTSAVLRASFIRNG--KQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccce---------eeeeecCccceeEeeeeeeCC--cEEEeccCCCcEEEEeccchhhh
Confidence            9  6699999999999999999877         899999999999999999999  78999999999999999999887


Q ss_pred             eeee-eeeeEEEEEecCCCC
Q 019117          327 LIAR-LICFSLHVKYNPQSV  345 (346)
Q Consensus       327 ~~~~-~~~~~~~~~~spdg~  345 (346)
                      .... +...+++++-+|++.
T Consensus       583 ~tlD~H~DrvWaL~~~~~~~  602 (775)
T KOG0319|consen  583 MTLDAHNDRVWALSVSPLLD  602 (775)
T ss_pred             hhhhhccceeEEEeecCccc
Confidence            7654 445688887777653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-33  Score=210.44  Aligned_cols=273  Identities=18%  Similarity=0.263  Sum_probs=217.2

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ++++.+.+..-.+.|.++.|++    +|.+|++++.|. ++|||..++.+++.+..     +.-.+..++|.  .... .
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~----~G~~litss~dDsl~LYd~~~g~~~~ti~s-----kkyG~~~~~Ft--h~~~-~   70 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSD----DGLLLITSSEDDSLRLYDSLSGKQVKTINS-----KKYGVDLACFT--HHSN-T   70 (311)
T ss_pred             ccccccccccCCCceeEEEecC----CCCEEEEecCCCeEEEEEcCCCceeeEeec-----ccccccEEEEe--cCCc-e
Confidence            4666777777888999999998    889999988775 99999999999998876     34455556776  3333 4


Q ss_pred             EEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          101 LVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       101 l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      ++.++.  |.+|+..++.+.+.++.+.||...|++++.+| .+..+++++.|++|++||++..++...+.     ...-.
T Consensus        71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~p  144 (311)
T KOG1446|consen   71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGRP  144 (311)
T ss_pred             EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe-----cCCCc
Confidence            555554  88999999999999999999999999999999 77999999999999999999888877775     23334


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~  255 (346)
                      .++|+| .|-+++++.....|++||+|.....+..                   ...+. ......+.+.|+  |++++.
T Consensus       145 i~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~-------------------tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  145 IAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFT-------------------TFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             ceeECC-CCcEEEEecCCCeEEEEEecccCCCCce-------------------eEccCCCCccceeeeEEcCCCCEEEE
Confidence            588999 8888888887779999999996432221                   11121 335667888898  999999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCc---CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee-
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC---DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-  331 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  331 (346)
                      +...+.+.+.|.-++.         .+..+..+..   --...+|+||+  +++++|+.||.|++|+++++..+....- 
T Consensus       205 sT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftPds--~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  205 STNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTPDS--KFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             EeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECCCC--cEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            9999999999999887         4444444322   22567899999  7999999999999999999987776654 


Q ss_pred             -eeeEEEEEecCC
Q 019117          332 -ICFSLHVKYNPQ  343 (346)
Q Consensus       332 -~~~~~~~~~spd  343 (346)
                       .+++.++.|+|.
T Consensus       274 ~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  274 NGGPVSCVRFNPR  286 (311)
T ss_pred             CCCCccccccCCc
Confidence             456788899985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=242.33  Aligned_cols=261  Identities=16%  Similarity=0.283  Sum_probs=205.9

Q ss_pred             eeeeeecc-cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-----------------------e----e
Q 019117           23 YRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-----------------------A----A   73 (346)
Q Consensus        23 ~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-----------------------~----~   73 (346)
                      ....+.+. +|.+.|+++.||+    +|++||+|+.|+ |+||.+...+..                       .    .
T Consensus       256 l~~~Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  256 LTVVQEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             eEEeeccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence            34455566 8999999999999    899999999999 999998761000                       0    0


Q ss_pred             ------------------Ee----------eeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec
Q 019117           74 ------------------LQ----------SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV  125 (346)
Q Consensus        74 ------------------~~----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  125 (346)
                                        +.          -....+|...|..++|+  .++  +|++++.|.+|++|++...++++.|.
T Consensus       332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~--fLLSSSMDKTVRLWh~~~~~CL~~F~  407 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNN--FLLSSSMDKTVRLWHPGRKECLKVFS  407 (712)
T ss_pred             ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc--cCC--eeEeccccccEEeecCCCcceeeEEe
Confidence                              00          00112477788888887  443  89999999999999999999999998


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                       |.+.|+||+|+|.+.++|++|+-||.|+||++...+.+.-..    -..-|++++|.| +|+..+.|+.+|.+++|+..
T Consensus       408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             -cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----hhhhheeEEecc-CCceEEEEEeccEEEEEEcc
Confidence             999999999999999999999999999999998777666554    568999999999 89999999999999999999


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                      ..+......+.....              .-..|. .|+.+.|.   .+.+++.+.|..|||+|.++.+         ++
T Consensus       482 ~lk~~~~~~I~~~~~--------------Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---------lv  537 (712)
T KOG0283|consen  482 GLKLVSDFHIRLHNK--------------KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---------LV  537 (712)
T ss_pred             CCeEEEeeeEeeccC--------------ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh---------hh
Confidence            865433332221110              111233 79999998   4468999999999999998766         67


Q ss_pred             ccccCCC--cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          283 QKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       283 ~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ..+++..  ..-....|+.||  ++++++++|..|++|++...
T Consensus       538 ~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  538 HKFKGFRNTSSQISASFSSDG--KHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             hhhcccccCCcceeeeEccCC--CEEEEeecCceEEEEeCCCC
Confidence            7777643  233567899999  79999999999999998543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-34  Score=208.78  Aligned_cols=269  Identities=16%  Similarity=0.162  Sum_probs=233.6

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      +.+++|...|.+|+|+.    +|..||+++.|+ +.+|++........+.   ...|...|-.++|.  |.....+++++
T Consensus        14 r~~~~~~~~v~Sv~wn~----~g~~lasgs~dktv~v~n~e~~r~~~~~~---~~gh~~svdql~w~--~~~~d~~atas   84 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC----DGTKLASGSFDKTVSVWNLERDRFRKELV---YRGHTDSVDQLCWD--PKHPDLFATAS   84 (313)
T ss_pred             HHhhhhhhcceEEEEcc----cCceeeecccCCceEEEEecchhhhhhhc---ccCCCcchhhheeC--CCCCcceEEec
Confidence            56789999999999998    899999999999 9999998775444333   34577788888887  55555899999


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      .|.+|++||.+.++++..+....+. .-+.|+| ++.+++.++.|..|.+.|.++.+.+...+    ....+..++|+. 
T Consensus        85 ~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~----~~~e~ne~~w~~-  157 (313)
T KOG1407|consen   85 GDKTIRIWDIRSGKCTARIETKGEN-INITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ----FKFEVNEISWNN-  157 (313)
T ss_pred             CCceEEEEEeccCcEEEEeeccCcc-eEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc----ccceeeeeeecC-
Confidence            9999999999999999888754444 4678999 89999999999999999999988887775    677888999995 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                      ++++++.....|+|.|.....                       -+++..+..|+....|+.|+  |++||+|+.|..+.
T Consensus       158 ~nd~Fflt~GlG~v~ILsyps-----------------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPS-----------------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             CCCEEEEecCCceEEEEeccc-----------------------cccccccccCCcceEEEEECCCCceEeeccccceee
Confidence            777777777789999988877                       45788999999999999999  99999999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      +||++..-         +++.+..+.-+|..+.||.||  ++||++|+|..|-|=++++|..+..+...+....++|+|.
T Consensus       215 LWD~~ELi---------C~R~isRldwpVRTlSFS~dg--~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  215 LWDVDELI---------CERCISRLDWPVRTLSFSHDG--RMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK  283 (313)
T ss_pred             ccChhHhh---------hheeeccccCceEEEEeccCc--ceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence            99998755         778888888999999999999  7999999999999999999999999999999999999997


Q ss_pred             CC
Q 019117          344 SV  345 (346)
Q Consensus       344 g~  345 (346)
                      ..
T Consensus       284 ~~  285 (313)
T KOG1407|consen  284 RP  285 (313)
T ss_pred             Cc
Confidence            54

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.9e-34  Score=216.44  Aligned_cols=257  Identities=19%  Similarity=0.272  Sum_probs=216.6

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..++..++.||-..|..+++|+    .-.+|.+++.|+ |+.||+...+.++.+.+     |-..|++++..  |.-. .
T Consensus       182 tg~LkltltGhi~~vr~vavS~----rHpYlFs~gedk~VKCwDLe~nkvIR~YhG-----HlS~V~~L~lh--PTld-v  249 (460)
T KOG0285|consen  182 TGQLKLTLTGHIETVRGVAVSK----RHPYLFSAGEDKQVKCWDLEYNKVIRHYHG-----HLSGVYCLDLH--PTLD-V  249 (460)
T ss_pred             cCeEEEeecchhheeeeeeecc----cCceEEEecCCCeeEEEechhhhhHHHhcc-----ccceeEEEecc--ccce-e
Confidence            4567778899999999999998    456999999999 99999999988877765     67788888877  6555 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      |++|+.|.+++|||+++...+..+.+|..+|..+.+.| -...+++|+.|++|++||++.++.+..+.   .|...|+++
T Consensus       250 l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral  325 (460)
T KOG0285|consen  250 LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRAL  325 (460)
T ss_pred             EEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeee---cccceeeEE
Confidence            99999999999999999999999999999999999999 67789999999999999999999999988   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeec
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVD  259 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d  259 (346)
                      +.+| ....+++++.| .|+-|++..                       +..+..+.+|...|.++..+ ..++++|+..
T Consensus       326 ~lhP-~e~~fASas~d-nik~w~~p~-----------------------g~f~~nlsgh~~iintl~~nsD~v~~~G~dn  380 (460)
T KOG0285|consen  326 CLHP-KENLFASASPD-NIKQWKLPE-----------------------GEFLQNLSGHNAIINTLSVNSDGVLVSGGDN  380 (460)
T ss_pred             ecCC-chhhhhccCCc-cceeccCCc-----------------------cchhhccccccceeeeeeeccCceEEEcCCc
Confidence            9999 88888888876 799999988                       44566688999999999998 7899999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      |.+.+||.+++-.............+. .+..|.+.+|...+  ..|++|..|.+|++|.-..
T Consensus       381 g~~~fwdwksg~nyQ~~~t~vqpGSl~-sEagI~as~fDktg--~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  381 GSIMFWDWKSGHNYQRGQTIVQPGSLE-SEAGIFASCFDKTG--SRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             eEEEEEecCcCcccccccccccCCccc-cccceeEEeecccC--ceEEeccCCcceEEEeccc
Confidence            999999999875321111000001111 24578889998888  7899999999999997544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.8e-33  Score=215.91  Aligned_cols=258  Identities=14%  Similarity=0.235  Sum_probs=217.3

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ...+..+++.||.++|.+++|.-.++ ....|++++.|+ +++|....+......... ..+|...|.+++..  ++|. 
T Consensus       132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~--~sgt-  206 (423)
T KOG0313|consen  132 LKGKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVD--SSGT-  206 (423)
T ss_pred             cCCceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEec--CCCC-
Confidence            34577788899999999888876443 234799999999 999998877654332211 12588899888876  8888 


Q ss_pred             EEEEeecCCeEEEEEccC-------------------------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEE
Q 019117          100 FLVAGGINGIIRVIDVSN-------------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR  154 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  154 (346)
                      .+++|+.|..|.||+..+                         +.++.++.+|.++|.++.|++  ...+++++.|.+|+
T Consensus       207 r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk  284 (423)
T KOG0313|consen  207 RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIK  284 (423)
T ss_pred             eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEE
Confidence            999999999999999321                         234667889999999999996  67999999999999


Q ss_pred             EEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117          155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  234 (346)
Q Consensus       155 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
                      .||+.++..+..+.    ....++++..+| ...+|++|+.|..|++||.+....                    .....
T Consensus       285 ~WDletg~~~~~~~----~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g--------------------s~v~~  339 (423)
T KOG0313|consen  285 VWDLETGGLKSTLT----TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG--------------------SVVSQ  339 (423)
T ss_pred             EEEeecccceeeee----cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC--------------------ceeEE
Confidence            99999999999887    678899999999 899999999999999999998432                    34567


Q ss_pred             EEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          235 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       235 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      ++.+|.+.|.++.|+   ..+|++++.|+++++||+++.+        .++..+.+|...|.++.|...+   ++++|+.
T Consensus       340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~~~~---~IvSGGa  408 (423)
T KOG0313|consen  340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWNEGG---LIVSGGA  408 (423)
T ss_pred             eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEeccCCc---eEEeccC
Confidence            899999999999999   5689999999999999999876        3788999999999999999764   8999999


Q ss_pred             CCcEEEEEcC
Q 019117          312 EGKIFVWELQ  321 (346)
Q Consensus       312 dg~i~iwd~~  321 (346)
                      |++|+|+.-.
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999998654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=218.40  Aligned_cols=276  Identities=16%  Similarity=0.244  Sum_probs=221.3

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      +.+..+.+..|.+.|+-+.||+    +|++||+++.|. ..+|.......++......  .|..+|..+.|+  ||.+ +
T Consensus       213 p~qt~qil~~htdEVWfl~FS~----nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wS--PDdr-y  283 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSH----NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWS--PDDR-Y  283 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcC----CCeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEEC--CCCC-e
Confidence            3455667899999999999999    899999999999 8899988777655544443  478888888887  9999 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      |++++.+..+.+||+.+|.....+. ++...+.+++|.| ++..+++|+.|+++..||+. |+.+...+.  .....|.+
T Consensus       284 LlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g--vr~~~v~d  359 (519)
T KOG0293|consen  284 LLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEG--VRDPKVHD  359 (519)
T ss_pred             EEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccc--cccceeEE
Confidence            9999999999999999999888776 3468899999999 89999999999999999986 666666652  13357999


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      ++..+ ++.++++.+.|..|++++.....                       .. .+.....+|+++..+  ++++++.-
T Consensus       360 lait~-Dgk~vl~v~~d~~i~l~~~e~~~-----------------------dr-~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  360 LAITY-DGKYVLLVTVDKKIRLYNREARV-----------------------DR-GLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EEEcC-CCcEEEEEecccceeeechhhhh-----------------------hh-ccccccCceeEEEEcCCCcEEEEEc
Confidence            99998 89999999999999999988721                       11 123345568888887  78999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcC--eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee-eeeee
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLICF  334 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~  334 (346)
                      .+..+++||+...+         .+.++.+|...  +..-+|.-..+ .++++||+|+.|+||+..+++++... .+...
T Consensus       415 ~~qei~LWDl~e~~---------lv~kY~Ghkq~~fiIrSCFgg~~~-~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~  484 (519)
T KOG0293|consen  415 QDQEIHLWDLEENK---------LVRKYFGHKQGHFIIRSCFGGGND-KFIASGSEDSKVYIWHRISGKLLAVLSGHSKT  484 (519)
T ss_pred             ccCeeEEeecchhh---------HHHHhhcccccceEEEeccCCCCc-ceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence            99999999999766         78888888754  33334544333 69999999999999999999866543 23345


Q ss_pred             EEEEEecCCCC
Q 019117          335 SLHVKYNPQSV  345 (346)
Q Consensus       335 ~~~~~~spdg~  345 (346)
                      +++++|||..+
T Consensus       485 vNcVswNP~~p  495 (519)
T KOG0293|consen  485 VNCVSWNPADP  495 (519)
T ss_pred             eeEEecCCCCH
Confidence            89999999754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=227.36  Aligned_cols=267  Identities=20%  Similarity=0.311  Sum_probs=220.1

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ....+..|.+.|..+.|-+    +...|++|+.|. |++|+....+  ....+.     +..+.+..+.+.  ++++ ++
T Consensus       167 ~~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-----Gs~g~it~~d~d--~~~~-~~  234 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLA-----GSLGNITSIDFD--SDNK-HV  234 (459)
T ss_pred             hhhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccchhhhhhhhh-----ccCCCcceeeec--CCCc-eE
Confidence            3445678999999999998    568999999999 9999976555  233333     255677777766  8898 88


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++++.|+.+++|++...+...++.+|++.|+++.|.. ....+++|+.|.+|++||+....+.+++-    ..+.+..++
T Consensus       235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~  309 (459)
T KOG0288|consen  235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIV  309 (459)
T ss_pred             EeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc----ccccccceE
Confidence            8999999999999999999999999999999999998 55569999999999999999988888775    567777887


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD  259 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  259 (346)
                      ..   ...+++|..|++|++||.+.                       ..+......+. .|+++..+  +..+++++.|
T Consensus       310 ~~---~~~~~SgH~DkkvRfwD~Rs-----------------------~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRD  362 (459)
T KOG0288|consen  310 CS---ISDVISGHFDKKVRFWDIRS-----------------------ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRD  362 (459)
T ss_pred             ec---ceeeeecccccceEEEeccC-----------------------CceeeEeecCc-ceeeEeeccCCeEEeeecCC
Confidence            75   35689999999999999998                       44566666665 79998887  7789999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--  333 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  333 (346)
                      .++.+.|+++.+         ..+.+...    ...++.+.|||++  .|+++||.||.|+||++.+++........+  
T Consensus       363 dtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSpd~--~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  363 DTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSPDG--SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             Cceeeeeccccc---------EEEEeeccccccccccceeEECCCC--ceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            999999999886         33333331    2458899999999  799999999999999999998776665543  


Q ss_pred             -eEEEEEecCCCCC
Q 019117          334 -FSLHVKYNPQSVY  346 (346)
Q Consensus       334 -~~~~~~~spdg~~  346 (346)
                       .+++++|+|.|.+
T Consensus       432 ~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  432 AAITSLSWNPSGSG  445 (459)
T ss_pred             cceEEEEEcCCCch
Confidence             3899999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-33  Score=208.14  Aligned_cols=268  Identities=16%  Similarity=0.235  Sum_probs=215.1

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ...+.+...+..|.++|++|+.+      +.++|+|+.|. |+|||..+...+..+..     |.+.|+++.|.......
T Consensus        30 ~~~l~~lF~~~aH~~sitavAVs------~~~~aSGssDetI~IYDm~k~~qlg~ll~-----HagsitaL~F~~~~S~s   98 (362)
T KOG0294|consen   30 KPTLKPLFAFSAHAGSITALAVS------GPYVASGSSDETIHIYDMRKRKQLGILLS-----HAGSITALKFYPPLSKS   98 (362)
T ss_pred             ceeeeccccccccccceeEEEec------ceeEeccCCCCcEEEEeccchhhhcceec-----cccceEEEEecCCcchh
Confidence            45566677789999999999996      58999999988 99999999888887775     78889999887432223


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                       .|++|+.||.|.+|+....+++..+++|.+.|+.++.+| .+.+.++.+.|+.+++||+-.|+.-..+.    -....+
T Consensus        99 -hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L~~~at  172 (362)
T KOG0294|consen   99 -HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN----LKNKAT  172 (362)
T ss_pred             -heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec----cCCcce
Confidence             799999999999999999999999999999999999999 88999999999999999999888766665    333445


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEe
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS  257 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~  257 (346)
                      .+.|+| .|.+++.++.+ .|-+|.+.+-.                        ++.....+..+.|+.|. +..|++|+
T Consensus       173 ~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~------------------------v~~~i~~~~r~l~~~~l~~~~L~vG~  226 (362)
T KOG0294|consen  173 LVSWSP-QGDHFVVSGRN-KIDIYQLDNAS------------------------VFREIENPKRILCATFLDGSELLVGG  226 (362)
T ss_pred             eeEEcC-CCCEEEEEecc-EEEEEecccHh------------------------HhhhhhccccceeeeecCCceEEEec
Confidence            599999 77777776654 68899888721                        12222233557777777 88999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC-----Ccceeeeee
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-----PPVLIARLI  332 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~  332 (346)
                      .|+.|++||.++..         ++..+.+|..+|..+.+--+....+|+++|.||.|++||+...     +++......
T Consensus       227 d~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~  297 (362)
T KOG0294|consen  227 DNEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTN  297 (362)
T ss_pred             CCceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecC
Confidence            99999999999865         7888999999999998665544479999999999999999886     233344444


Q ss_pred             eeEEEEE
Q 019117          333 CFSLHVK  339 (346)
Q Consensus       333 ~~~~~~~  339 (346)
                      ...+|+.
T Consensus       298 ~RltCl~  304 (362)
T KOG0294|consen  298 VRLTCLR  304 (362)
T ss_pred             Cccceee
Confidence            4455543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-34  Score=220.34  Aligned_cols=267  Identities=14%  Similarity=0.207  Sum_probs=217.8

Q ss_pred             cccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCC
Q 019117            4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK   82 (346)
Q Consensus         4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~   82 (346)
                      +..++..-+|...+...  +++.+++.+|..+|..+.|||    |.++|++|+.+. +.+||..+|.....+..    .+
T Consensus       242 aSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~tgd~~~~y~~----~~  311 (519)
T KOG0293|consen  242 ASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDTGDLRHLYPS----GL  311 (519)
T ss_pred             ccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCcchhhhhccc----Cc
Confidence            34455555666555333  899999999999999999999    668888888877 99999999998777663    25


Q ss_pred             ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      +..+.+++|.  |||. .+++|+.|+.+..||++. +.....++- ...|.+++..+ ++.++++...|..|++++.++.
T Consensus       312 ~~S~~sc~W~--pDg~-~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  312 GFSVSSCAWC--PDGF-RFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             CCCcceeEEc--cCCc-eeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhh
Confidence            6788889998  9999 999999999999999864 444444432 35699999999 8889998899999999999877


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      .....+.    ...+|++++.+. +++++++.-.+..|++||+..                       ...+..+.+|..
T Consensus       387 ~dr~lis----e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e-----------------------~~lv~kY~Ghkq  438 (519)
T KOG0293|consen  387 VDRGLIS----EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE-----------------------NKLVRKYFGHKQ  438 (519)
T ss_pred             hhhcccc----ccCceeEEEEcC-CCcEEEEEcccCeeEEeecch-----------------------hhHHHHhhcccc
Confidence            6665554    667999999997 999999999999999999997                       334555666665


Q ss_pred             ceE--EEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          242 YVD--CNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       242 ~i~--~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      .-.  .-+|-   ..++++|++|+.|+||+..+++         ++..+.+|...|.+++|+|... .++|++|+||+|+
T Consensus       439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------ll~~LsGHs~~vNcVswNP~~p-~m~ASasDDgtIR  508 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------LLAVLSGHSKTVNCVSWNPADP-EMFASASDDGTIR  508 (519)
T ss_pred             cceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------eeEeecCCcceeeEEecCCCCH-HHhhccCCCCeEE
Confidence            422  22333   3699999999999999999988         8999999999999999999876 6999999999999


Q ss_pred             EEEcCCC
Q 019117          317 VWELQSS  323 (346)
Q Consensus       317 iwd~~~~  323 (346)
                      ||.....
T Consensus       509 IWg~~~~  515 (519)
T KOG0293|consen  509 IWGPSDN  515 (519)
T ss_pred             EecCCcc
Confidence            9987653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=9.2e-34  Score=222.32  Aligned_cols=256  Identities=19%  Similarity=0.317  Sum_probs=212.3

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee----------eEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA----------ALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      -|.+.|+.+.+-|.   +..++|+.+.++ |.|||..+-....          .+.+     |...-+.++|.....|  
T Consensus       122 ~h~gEVnRaRymPQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-----H~~eg~glsWn~~~~g--  191 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-----HEKEGYGLSWNRQQEG--  191 (422)
T ss_pred             cCCccchhhhhCCC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-----ecccccccccccccce--
Confidence            58999999999994   457889888888 9999987533222          3333     4445566888855555  


Q ss_pred             EEEEeecCCeEEEEEccCcc-------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--CeeEEEeccc
Q 019117          100 FLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGA  170 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~  170 (346)
                      .|++++.|+.|++||+....       ....+.+|...|..++|++....+|+++++|+.+.|||+++  .++.....  
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--  269 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--  269 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--
Confidence            69999999999999996542       34567899999999999998899999999999999999994  45555555  


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                       +|.+.|.|++|+|.++.+|+||+.|++|.+||+|+.                      ..++.++..|.+.|.++.|+ 
T Consensus       270 -ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL----------------------~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  270 -AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL----------------------NKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             -ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc----------------------ccCceeccCCCcceEEEEeCC
Confidence             899999999999999999999999999999999994                      45788999999999999999 


Q ss_pred             --CCEEEEEeecCeEEEEcCCCCCCC-----CCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          250 --GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       250 --~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                        ...|++++.|+.+.+||+..-...     ...+..+++....+|...|..+.|+|... -.+++.++|+.+.||....
T Consensus       327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeeccc
Confidence              568999999999999999764322     23345566778888999999999999986 5889999999999999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.8e-33  Score=236.66  Aligned_cols=249  Identities=22%  Similarity=0.388  Sum_probs=218.9

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +.+...+.||.+.|++++|..    -+.+|++|+.|. +++||..++.+...+..     |...+.++...    .. ++
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-----h~stv~~~~~~----~~-~~  304 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQG-----HTSSVRCLTID----PF-LL  304 (537)
T ss_pred             eEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEecC-----CCceEEEEEcc----Cc-eE
Confidence            334444899999999999985    468999999898 99999999999999885     77777777654    23 78


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++|+.|.+|++|++.++..+..+.+|.++|.++..+   +.++++|+.|++|++||+.+++++..+.   +|..+|+++.
T Consensus       305 ~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~  378 (537)
T KOG0274|consen  305 VSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLI  378 (537)
T ss_pred             eeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEE
Confidence            899999999999999999999999999999999995   6899999999999999999999999999   8999999998


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCe
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE  261 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~  261 (346)
                      +.+ . ..+++|+.|++|++||+++..                      .++..+..|...+..+.+.+++|++++.|++
T Consensus       379 ~~~-~-~~~~Sgs~D~~IkvWdl~~~~----------------------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~  434 (537)
T KOG0274|consen  379 VDS-E-NRLLSGSLDTTIKVWDLRTKR----------------------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGT  434 (537)
T ss_pred             ecC-c-ceEEeeeeccceEeecCCchh----------------------hhhhhhcCCcccccccccccceeEecccccc
Confidence            874 3 889999999999999999921                      5788899999999999888999999999999


Q ss_pred             EEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                      |++||..+++         +++.+.+ |.+.|..+++.  .  ..+++++.||.+++||+++++....
T Consensus       435 Ik~WD~~~~~---------~~~~~~~~~~~~v~~l~~~--~--~~il~s~~~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  435 IKLWDAEEGE---------CLRTLEGRHVGGVSALALG--K--EEILCSSDDGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             EEEeecccCc---------eeeeeccCCcccEEEeecC--c--ceEEEEecCCeeEEEecccCchhhh
Confidence            9999999887         6777777 56788888887  2  4688999999999999999986653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-33  Score=226.59  Aligned_cols=258  Identities=19%  Similarity=0.289  Sum_probs=221.5

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ...+++.+.--.-||++.+|-+    ..+++++|++|. |+||+..+++.++.+..     |.+-+.+++..  |.-. +
T Consensus        44 tqtmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt~ekV~~FeA-----H~DyIR~iavH--Pt~P-~  111 (794)
T KOG0276|consen   44 TQTMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-----HSDYIRSIAVH--PTLP-Y  111 (794)
T ss_pred             cceeeeeeeecccchhhheeee----ccceEEEecCCceEEEEecccceeeEEeec-----cccceeeeeec--CCCC-e
Confidence            3455666666778899999998    568999999998 99999999999888875     77778878776  7777 9


Q ss_pred             EEEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          101 LVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      +++++.|-+|++||.+.+ .+.+++.+|+..|.+++|+|.+.+.|++++-|++|++|.+.+..+..++.   +|...|+|
T Consensus       112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~  188 (794)
T KOG0276|consen  112 VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNC  188 (794)
T ss_pred             EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcce
Confidence            999999999999999875 57889999999999999999999999999999999999999999999999   89999999


Q ss_pred             EEecCCCC--cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC--EEEE
Q 019117          180 VDFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILS  255 (346)
Q Consensus       180 ~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~  255 (346)
                      +.+.+ ++  .+|++|+.|.+|++||..+                       ..++.++.+|...|..+.|++.  .+++
T Consensus       189 Vdyy~-~gdkpylIsgaDD~tiKvWDyQt-----------------------k~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  189 VDYYT-GGDKPYLISGADDLTIKVWDYQT-----------------------KSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             EEecc-CCCcceEEecCCCceEEEeecch-----------------------HHHHHHhhcccccceEEEecCCCcEEEE
Confidence            99997 43  5899999999999999999                       6789999999999999999954  8999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      |++||++|||+..+.+         ....+...-.++++++-.+.+  ..++.|.++|.| +..+-.++|.....
T Consensus       245 gsEDGTvriWhs~Ty~---------lE~tLn~gleRvW~I~~~k~~--~~i~vG~Deg~i-~v~lgreeP~vsMd  307 (794)
T KOG0276|consen  245 GSEDGTVRIWNSKTYK---------LEKTLNYGLERVWCIAAHKGD--GKIAVGFDEGSV-TVKLGREEPAVSMD  307 (794)
T ss_pred             ecCCccEEEecCccee---------hhhhhhcCCceEEEEeecCCC--CeEEEeccCCcE-EEEccCCCCceeec
Confidence            9999999999999887         455666667799999988887  568888877765 44555555544433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.2e-33  Score=229.25  Aligned_cols=269  Identities=16%  Similarity=0.247  Sum_probs=226.6

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      .+.||+..|.++++|.    +..++++|+.+.+++|+..+.++++++..       +  +.++..|-|.++ ++++|...
T Consensus       368 ~~~GHR~dVRsl~vS~----d~~~~~Sga~~SikiWn~~t~kciRTi~~-------~--y~l~~~Fvpgd~-~Iv~G~k~  433 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSS----DSILLASGAGESIKIWNRDTLKCIRTITC-------G--YILASKFVPGDR-YIVLGTKN  433 (888)
T ss_pred             eeccchhheeEEEeec----CceeeeecCCCcEEEEEccCcceeEEecc-------c--cEEEEEecCCCc-eEEEeccC
Confidence            4589999999999997    66788888888899999999999888753       2  334445558888 99999999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-----Ce--eEEEecc--cCCCCcceE
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----GI--CILIFAG--AGGHRNEVL  178 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~--~~~~~~~--~~~~~~~v~  178 (346)
                      |.+.+||+.+...+.++++|.+.|++++.+| ++..+++||.|.+|++||..-     +.  ....+..  .-.-+..|.
T Consensus       434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL  512 (888)
T KOG0306|consen  434 GELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL  512 (888)
T ss_pred             CceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence            9999999999999999999999999999999 899999999999999999741     11  1111110  002467899


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      |+.++| ++.+|+.+--|.++++|-+.+.                       .-..++.+|.-+|.|+..+  +++++||
T Consensus       513 ~v~~Sp-dgk~LaVsLLdnTVkVyflDtl-----------------------KFflsLYGHkLPV~smDIS~DSklivTg  568 (888)
T KOG0306|consen  513 CVSVSP-DGKLLAVSLLDNTVKVYFLDTL-----------------------KFFLSLYGHKLPVLSMDISPDSKLIVTG  568 (888)
T ss_pred             EEEEcC-CCcEEEEEeccCeEEEEEecce-----------------------eeeeeecccccceeEEeccCCcCeEEec
Confidence            999999 9999999999999999999983                       2355788999999999988  8899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeE
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFS  335 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~  335 (346)
                      +.|..|++|-++-+.         +-..+-+|...|.++.|.|..  ..+.++|.|+.|+-||-...+.++. ..+...+
T Consensus       569 SADKnVKiWGLdFGD---------CHKS~fAHdDSvm~V~F~P~~--~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev  637 (888)
T KOG0306|consen  569 SADKNVKIWGLDFGD---------CHKSFFAHDDSVMSVQFLPKT--HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEV  637 (888)
T ss_pred             cCCCceEEeccccch---------hhhhhhcccCceeEEEEcccc--eeEEEecCcceEEeechhhhhhheeeccchhee
Confidence            999999999998766         788899999999999999987  6899999999999999888765443 3344558


Q ss_pred             EEEEecCCCCC
Q 019117          336 LHVKYNPQSVY  346 (346)
Q Consensus       336 ~~~~~spdg~~  346 (346)
                      ++++.+|+|+|
T Consensus       638 ~cLav~~~G~~  648 (888)
T KOG0306|consen  638 WCLAVSPNGSF  648 (888)
T ss_pred             eeeEEcCCCCe
Confidence            99999999975

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.1e-33  Score=212.02  Aligned_cols=264  Identities=19%  Similarity=0.277  Sum_probs=213.2

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      .|.+.|.+|...+      +.+++|+.|+ +++|| ..|+....+.+     |.+++..++|....+.+..|++++.|.+
T Consensus       103 ~hdDWVSsv~~~~------~~IltgsYDg~~riWd-~~Gk~~~~~~G-----ht~~ik~v~~v~~n~~~~~fvsas~Dqt  170 (423)
T KOG0313|consen  103 LHDDWVSSVKGAS------KWILTGSYDGTSRIWD-LKGKSIKTIVG-----HTGPIKSVAWVIKNSSSCLFVSASMDQT  170 (423)
T ss_pred             cchhhhhhhcccC------ceEEEeecCCeeEEEe-cCCceEEEEec-----CCcceeeeEEEecCCccceEEEecCCce
Confidence            4888888888765      8999999999 99999 56777776664     7888888888765554447999999999


Q ss_pred             EEEEEccCcce----eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-------------------------
Q 019117          110 IRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-------------------------  160 (346)
Q Consensus       110 i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------------------------  160 (346)
                      +++|.++.++.    +...++|...|.++...+ ++..+++|+.|.+|++|+..+                         
T Consensus       171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             EEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence            99999987753    334459999999999999 899999999999999999321                         


Q ss_pred             CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      +.++..+.   +|..+|.++.|++  ...+++++.|.+|+.||+.....                       ...+ ...
T Consensus       250 r~P~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~-----------------------~~~~-~~~  300 (423)
T KOG0313|consen  250 RTPLVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL-----------------------KSTL-TTN  300 (423)
T ss_pred             cCceEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeecccc-----------------------eeee-ecC
Confidence            12334444   8999999999985  67799999999999999998332                       2222 235


Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      ..+.|+.+.  .++|++|+.|..|++||.+++.      .....+.+.+|...|.++.|+|... ..|++|+.|+++++|
T Consensus       301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------gs~v~~s~~gH~nwVssvkwsp~~~-~~~~S~S~D~t~klW  373 (423)
T KOG0313|consen  301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------GSVVSQSLIGHKNWVSSVKWSPTNE-FQLVSGSYDNTVKLW  373 (423)
T ss_pred             cceeEeecccccceeeecCCCCceeecCCCCCC------CceeEEeeecchhhhhheecCCCCc-eEEEEEecCCeEEEE
Confidence            567777777  6799999999999999999875      2336788999999999999999987 589999999999999


Q ss_pred             EcCCCC-cce-eeeeeeeEEEEEecCC
Q 019117          319 ELQSSP-PVL-IARLICFSLHVKYNPQ  343 (346)
Q Consensus       319 d~~~~~-~~~-~~~~~~~~~~~~~spd  343 (346)
                      |+++.+ ++. +..+...+.++.|+.-
T Consensus       374 DvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  374 DVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             EeccCCCcceeeccCCceEEEEeccCC
Confidence            999866 444 3445566889998753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7e-33  Score=206.45  Aligned_cols=246  Identities=17%  Similarity=0.236  Sum_probs=209.4

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ...+++|.++|..+.|.+    ++..+++++.|+ |+.||.++|+..+..+.     |..-|.++.  +..-|..++.++
T Consensus        83 ~~~lkgHsgAVM~l~~~~----d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-----h~~~vNs~~--p~rrg~~lv~Sg  151 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMR----DGSHILSCGTDKTVRGWDAETGKRIRKHKG-----HTSFVNSLD--PSRRGPQLVCSG  151 (338)
T ss_pred             eeeeccccceeEeeeecc----CCCEEEEecCCceEEEEecccceeeehhcc-----ccceeeecC--ccccCCeEEEec
Confidence            345679999999999998    789999999999 99999999999888775     566666665  335676689999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      +.|+++++||+++...++++. ....++++.|.. .+..+.+|+-|+.|++||++.......+.   +|...|+.+..+|
T Consensus       152 sdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~  226 (338)
T KOG0265|consen  152 SDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSR  226 (338)
T ss_pred             CCCceEEEEeecccchhhccc-cceeEEEEEecc-cccceeeccccCceeeeccccCcceEEee---cccCceeeEEecc
Confidence            999999999999988888876 456799999998 88999999999999999999999999999   8999999999999


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--cc--eEEEEec--CCEEEEEee
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--NY--VDCNRWL--GDFILSKSV  258 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--i~~~~~~--~~~l~~~~~  258 (346)
                       ++.++.+-+.|.++++||++..-.                   .+..+..+.+|.  -.  ...++|+  ++.+.+|+.
T Consensus       227 -~gs~llsnsMd~tvrvwd~rp~~p-------------------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~  286 (338)
T KOG0265|consen  227 -YGSFLLSNSMDNTVRVWDVRPFAP-------------------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA  286 (338)
T ss_pred             -CCCccccccccceEEEEEecccCC-------------------CCceEEEeecchhhhhhhcceeeccCCCCccccccc
Confidence             999999999999999999998322                   112234444433  22  3455666  778999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      |..+++||.....         .+..+++|.+.|.+++|+|..  .+|.+++.|.+|++=
T Consensus       287 dr~vyvwd~~~r~---------~lyklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  287 DRFVYVWDTTSRR---------ILYKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYLG  335 (338)
T ss_pred             cceEEEeeccccc---------EEEEcCCcceeEEEeeecCCC--cEEEEeccCceeEee
Confidence            9999999998766         899999999999999999998  799999999999873

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.8e-34  Score=208.09  Aligned_cols=247  Identities=19%  Similarity=0.319  Sum_probs=205.4

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      -+-+|.||++.|+...++.    +..+.|+++.|- -++||..+|..+..+.      |..-|..++|.  .|.+ +|++
T Consensus        51 wigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgdelhsf~------hkhivk~~af~--~ds~-~llt  117 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDELHSFE------HKHIVKAVAFS--QDSN-YLLT  117 (334)
T ss_pred             cEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhhhhhhh------hhheeeeEEec--ccch-hhhc
Confidence            4567899999999999886    667888888887 9999999999888776      77778777776  7777 9999


Q ss_pred             eecCCeEEEEEccCcc-eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          104 GGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      |+.+..++|||++..+ +...+.+|++.|..+.|.. ..+.|++.++|++|++||.+++..++.+.    ...+|+++.+
T Consensus       118 gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEv  192 (334)
T KOG0278|consen  118 GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEV  192 (334)
T ss_pred             cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceee
Confidence            9999999999998765 5678899999999999999 88899999999999999999999999997    7889999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN  260 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~  260 (346)
                      ++ ++++|. ....+.|.+||..++...                       .... -+..|.+...+  ...+++|+.|.
T Consensus       193 s~-dG~ilT-ia~gssV~Fwdaksf~~l-----------------------Ks~k-~P~nV~SASL~P~k~~fVaGged~  246 (334)
T KOG0278|consen  193 SQ-DGRILT-IAYGSSVKFWDAKSFGLL-----------------------KSYK-MPCNVESASLHPKKEFFVAGGEDF  246 (334)
T ss_pred             cc-CCCEEE-EecCceeEEeccccccce-----------------------eecc-CccccccccccCCCceEEecCcce
Confidence            97 877554 455689999999984321                       1111 12223333333  67899999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccc-cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      .++.||..+++         .+..+ ++|.++|.++.|+|||  ...++||+||+|++|.+..++..
T Consensus       247 ~~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  247 KVYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDG--ELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EEEEEeccCCc---------eeeecccCCCCceEEEEECCCC--ceeeccCCCceEEEEEecCCCch
Confidence            99999999987         34444 8899999999999999  68999999999999998877643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.7e-32  Score=218.35  Aligned_cols=244  Identities=25%  Similarity=0.417  Sum_probs=207.3

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ....+.+|...+..+.|+|    +++++++++.++ |.+|+..+++....+..     +...+.++.|.  ++++ ++++
T Consensus        43 ~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~--~~~~-~~~~  110 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASA----DGTYLASGSSDKTIRLWDLETGECVRTLTG-----HTSYVSSVAFS--PDGR-ILSS  110 (289)
T ss_pred             cEEEEecCCcceeEEEECC----CCCEEEEEcCCCeEEEEEcCcccceEEEec-----cCCcEEEEEEc--CCCC-EEEE
Confidence            4456678999999999999    667899998777 99999988766665553     55678777776  7776 8888


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      ++.++.|.+||+.+++....+..|...+.++.|+| ++.++++++.|+.|++||+++++.+..+.   .|...+.+++|+
T Consensus       111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~  186 (289)
T cd00200         111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFS  186 (289)
T ss_pred             ecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEEC
Confidence            88899999999998888888889999999999999 67888888889999999999888888887   688899999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      | ++..+++++.++.|++||++.                       ...+..+..|...+.++.|+  +.++++++.|+.
T Consensus       187 ~-~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  242 (289)
T cd00200         187 P-DGEKLLSSSSDGTIKLWDLST-----------------------GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT  242 (289)
T ss_pred             C-CcCEEEEecCCCcEEEEECCC-----------------------CceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence            8 777888888899999999987                       23344555788899999998  567777777999


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      |++||+.+++         .+..+..|...|.+++|++++  .+|++++.||.|++|+
T Consensus       243 i~i~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iw~  289 (289)
T cd00200         243 IRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDG--KRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEEcCCce---------eEEEccccCCcEEEEEECCCC--CEEEEecCCCeEEecC
Confidence            9999998765         556666788899999999998  6899999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-33  Score=234.18  Aligned_cols=252  Identities=23%  Similarity=0.357  Sum_probs=212.0

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ..++..|.+|.++|..++|+|    .+.+|++|++|. |++|+..+.+++.++.+     |-+-|..+.|.  +.-. .+
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~rrclftL~G-----HlDYVRt~~FH--heyP-WI  108 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-----HLDYVRTVFFH--HEYP-WI  108 (1202)
T ss_pred             hhHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEecccceehhhhcc-----ccceeEEeecc--CCCc-eE
Confidence            346778899999999999999    678999999998 99999999999888876     55556656554  7776 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee------------------
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC------------------  163 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------  163 (346)
                      +++|.|.+|+||++.+++++..+.+|+-.|.|..|+| ...+++++|-|.+|++||+.--+.                  
T Consensus       109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            9999999999999999999999999999999999999 889999999999999999862110                  


Q ss_pred             -----------EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          164 -----------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       164 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                                 ...+   .+|...|+-++|+| .-.++++|+.|+.|++|.+...+                     ...
T Consensus       188 ~dLfg~~DaVVK~VL---EGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetK---------------------aWE  242 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVL---EGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK---------------------AWE  242 (1202)
T ss_pred             hhhcCCcCeeeeeee---cccccccceEEecC-CcceEEecCCcceeeEEEecccc---------------------cee
Confidence                       0112   28999999999999 88899999999999999998732                     234


Q ss_pred             eEEEeecccceEEEEecC--CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117          233 VFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       233 ~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      +-+..+|.+.|+++-|++  +++++.|+|++|+|||+...+         .++.+....+..+.++-+|..  +++++|-
T Consensus       243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---------~v~tfrrendRFW~laahP~l--NLfAAgH  311 (1202)
T KOG0292|consen  243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---------SVQTFRRENDRFWILAAHPEL--NLFAAGH  311 (1202)
T ss_pred             ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---------ceeeeeccCCeEEEEEecCCc--ceeeeec
Confidence            567889999999999995  899999999999999998766         677887777889999999988  5666554


Q ss_pred             CCCcEEEEEcCCCC
Q 019117          311 REGKIFVWELQSSP  324 (346)
Q Consensus       311 ~dg~i~iwd~~~~~  324 (346)
                       |+-+.+|.++...
T Consensus       312 -DsGm~VFkleREr  324 (1202)
T KOG0292|consen  312 -DSGMIVFKLERER  324 (1202)
T ss_pred             -CCceEEEEEcccC
Confidence             4445677776544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-32  Score=200.36  Aligned_cols=254  Identities=15%  Similarity=0.160  Sum_probs=213.7

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      .|+||..+++-|.|+.    +|.+|.+++.|. ..+|-...|+.+..+.+     |.+.|+++...  .+.+ .+++|+.
T Consensus         5 ~l~GHERplTqiKyN~----eGDLlFscaKD~~~~vw~s~nGerlGty~G-----HtGavW~~Did--~~s~-~liTGSA   72 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR----EGDLLFSCAKDSTPTVWYSLNGERLGTYDG-----HTGAVWCCDID--WDSK-HLITGSA   72 (327)
T ss_pred             ccccCccccceEEecC----CCcEEEEecCCCCceEEEecCCceeeeecC-----CCceEEEEEec--CCcc-eeeeccc
Confidence            3689999999999998    899999999999 99999889999888875     88999999887  5666 9999999


Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecC-------CCeeEEEecccCCCC
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQ-------TGICILIFAGAGGHR  174 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~-------~~~~~~~~~~~~~~~  174 (346)
                      |.++++||+.+|+++..++ ...+|..+.|++ ++++++...+     .+.|.++|++       ..++...+.   .+.
T Consensus        73 D~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~  147 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPD  147 (327)
T ss_pred             cceeEEEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCc
Confidence            9999999999999999988 567899999999 7777776654     4679999998       445566666   578


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  252 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  252 (346)
                      +.++.+-|.| -++.|++|..||.|.+||+++++                      ..+.+...|...|+.++++  ..+
T Consensus       148 skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~----------------------~~v~s~~~h~~~Ind~q~s~d~T~  204 (327)
T KOG0643|consen  148 SKITSALWGP-LGETIIAGHEDGSISIYDARTGK----------------------ELVDSDEEHSSKINDLQFSRDRTY  204 (327)
T ss_pred             cceeeeeecc-cCCEEEEecCCCcEEEEEcccCc----------------------eeeechhhhccccccccccCCcce
Confidence            9999999999 89999999999999999999843                      2445667799999999999  779


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCC----------------------------------------------cccccccccc
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGE----------------------------------------------GTADILQKYP  286 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~----------------------------------------------~~~~~~~~~~  286 (346)
                      +++++.|.+-++||..+.+.....                                              ...+.+..++
T Consensus       205 FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk  284 (327)
T KOG0643|consen  205 FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK  284 (327)
T ss_pred             EEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence            999999999999998765421100                                              0112345678


Q ss_pred             CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +|-++|++++|+|+|  ...++|++||.|++..+...
T Consensus       285 GHFGPINsvAfhPdG--ksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDG--KSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             ccccCcceeEECCCC--cccccCCCCceEEEEEeccc
Confidence            899999999999999  68999999999999877653

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.5e-31  Score=226.69  Aligned_cols=266  Identities=16%  Similarity=0.221  Sum_probs=190.7

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEee--------eecCCCccceEEEEEEEcC-CCCcEEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS--------YVDEDKEESFYTVSWACNV-DGIPFLVA  103 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~-~~~~~l~~  103 (346)
                      ..|.....++    ++..+++++.+. ...|+...+..+..+..        .....|.+.|.+++|+  | ++. +|++
T Consensus        21 ~~i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs--P~d~~-~LaS   93 (493)
T PTZ00421         21 LNVTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN--PFDPQ-KLFT   93 (493)
T ss_pred             eccccccccC----CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc--CCCCC-EEEE
Confidence            4455555555    445566666655 55665433322111110        0012477889888887  7 666 9999


Q ss_pred             eecCCeEEEEEccCc-------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117          104 GGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                      |+.|++|++||+.++       +.+..+.+|...|.+++|+|...++|++++.|++|++||+++++.+..+.   +|...
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~---~h~~~  170 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK---CHSDQ  170 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc---CCCCc
Confidence            999999999999765       34677889999999999999556799999999999999999999888887   79999


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce-EEEEec--CCEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFI  253 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l  253 (346)
                      |.+++|+| ++.+|++++.|+.|++||+++                       ...+..+..|...+ ..+.|.  +..+
T Consensus       171 V~sla~sp-dG~lLatgs~Dg~IrIwD~rs-----------------------g~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        171 ITSLEWNL-DGSLLCTTSKDKKLNIIDPRD-----------------------GTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             eEEEEEEC-CCCEEEEecCCCEEEEEECCC-----------------------CcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            99999999 899999999999999999998                       33455666776543 345565  4566


Q ss_pred             EEEe----ecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCCCCcce
Q 019117          254 LSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVL  327 (346)
Q Consensus       254 ~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~  327 (346)
                      ++++    .|+.|++||++....        ++.....+ ...+....|++++  .+|++++ .|+.|++||+.++++..
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~--------p~~~~~~d~~~~~~~~~~d~d~--~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMAS--------PYSTVDLDQSSALFIPFFDEDT--NLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCC--------ceeEeccCCCCceEEEEEcCCC--CEEEEEEeCCCeEEEEEeeCCceEE
Confidence            6654    479999999987542        22222222 2345566788998  5777766 59999999999988655


Q ss_pred             eeeee--eeEEEEEecCC
Q 019117          328 IARLI--CFSLHVKYNPQ  343 (346)
Q Consensus       328 ~~~~~--~~~~~~~~spd  343 (346)
                      .....  .....++|.|.
T Consensus       297 ~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        297 CSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EeeccCCCCCcceEeccc
Confidence            44332  22445666663

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=8e-32  Score=228.67  Aligned_cols=250  Identities=20%  Similarity=0.293  Sum_probs=217.7

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeee-EeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      |...+.+..|+.      ..+.+++.+. |++|+..++..+.. +.+     |.+.|+++++.  . +..+|++|+.|.+
T Consensus       207 ~~~~~~~~q~~~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-----H~g~V~~l~~~--~-~~~~lvsgS~D~t  272 (537)
T KOG0274|consen  207 DDHVVLCLQLHD------GFFKSGSDDSTLHLWDLNNGYLILTRLVG-----HFGGVWGLAFP--S-GGDKLVSGSTDKT  272 (537)
T ss_pred             Ccchhhhheeec------CeEEecCCCceeEEeecccceEEEeeccC-----CCCCceeEEEe--c-CCCEEEEEecCCc
Confidence            566788888875      6888888888 88999998887766 553     88999999985  3 3339999999999


Q ss_pred             EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      +++||..++++...+.+|.+.|.++...+   ..+++|+.|.+|++|++.++..+..+.   +|..+|+++..+   +.+
T Consensus       273 ~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~---~~~  343 (537)
T KOG0274|consen  273 ERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLD---EPL  343 (537)
T ss_pred             EEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEec---cccccEEEEEec---CCE
Confidence            99999999999999999999999998855   788999999999999999999999998   799999999985   678


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC-CEEEEEeecCeEEEEcCC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~  268 (346)
                      +++|+.|++|++||+..                       ...+..+.+|...|.++.+.+ .++++|+.|++|++||++
T Consensus       344 lvsgs~d~~v~VW~~~~-----------------------~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  344 LVSGSYDGTVKVWDPRT-----------------------GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             EEEEecCceEEEEEhhh-----------------------ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCC
Confidence            99999999999999998                       568899999999999999998 999999999999999999


Q ss_pred             CC-CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee--eeEEEEEe
Q 019117          269 MK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI--CFSLHVKY  340 (346)
Q Consensus       269 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~  340 (346)
                      +. +         ++..+.+|..-+..+.+.  +  ++|++++.|+.|++||..+++.+......  +.+..+++
T Consensus       401 ~~~~---------c~~tl~~h~~~v~~l~~~--~--~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~  462 (537)
T KOG0274|consen  401 TKRK---------CIHTLQGHTSLVSSLLLR--D--NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL  462 (537)
T ss_pred             chhh---------hhhhhcCCcccccccccc--c--ceeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence            88 4         889999998888666554  3  58999999999999999999987766653  44555544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-32  Score=216.35  Aligned_cols=244  Identities=21%  Similarity=0.280  Sum_probs=205.7

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      ++....+.|+++.|-.    ||++||.|...| |+|||..+...+..+..     |..++..+.|+  |.+...+++|+.
T Consensus        63 ~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-----h~apv~~~~f~--~~d~t~l~s~sD  131 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKSRVILRQLYA-----HQAPVHVTKFS--PQDNTMLVSGSD  131 (487)
T ss_pred             hHHhhccceeEEEeec----CCeEEEccCCcCcEEEeccccHHHHHHHhh-----ccCceeEEEec--ccCCeEEEecCC
Confidence            3445667899999997    899999999988 99999666555555654     77778888877  666659999999


Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCC
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      |+.+++||+.+......+.+|++.|.|.+|+|.++..++||+.||.|++||++.. ..+.++.    |..+|..+.+-| 
T Consensus       132 d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lp-  206 (487)
T KOG0310|consen  132 DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALP-  206 (487)
T ss_pred             CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcC-
Confidence            9999999999988777899999999999999977889999999999999999987 7778886    999999999999 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                      ++.++++++. ..|++||+..+.                      +.+.....|...|+|+.+.  +..|++++-|+.|+
T Consensus       207 sgs~iasAgG-n~vkVWDl~~G~----------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  207 SGSLIASAGG-NSVKVWDLTTGG----------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK  263 (487)
T ss_pred             CCCEEEEcCC-CeEEEEEecCCc----------------------eehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence            8888998874 589999999632                      3344455599999999998  68999999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      +||+.+.+         .+..+.. .++|.+++.+|++  ..++.|..||.+.+=+...
T Consensus       264 Vfd~t~~K---------vv~s~~~-~~pvLsiavs~dd--~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  264 VFDTTNYK---------VVHSWKY-PGPVLSIAVSPDD--QTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEEccceE---------EEEeeec-ccceeeEEecCCC--ceEEEecccceeeeehhhc
Confidence            99987766         5666654 3599999999998  6899999999887775444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=198.18  Aligned_cols=206  Identities=21%  Similarity=0.306  Sum_probs=185.6

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      ++++|.++.+.  -+|+ |.++++.|.+|++|+...+.+++++.+|...|..++.+. +...|++|+.|..+.+||+.+|
T Consensus        16 ~qgaV~avryN--~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   16 AQGAVRAVRYN--VDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             cccceEEEEEc--cCCC-EEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccC
Confidence            67788777776  8899 999999999999999999999999999999999999998 8889999999999999999999


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      +.++.++   +|.+.|+.+.|+. +...+++|+.|.++++||.++..                     ..|++.+....+
T Consensus        92 kv~Rr~r---gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s---------------------~ePiQildea~D  146 (307)
T KOG0316|consen   92 KVDRRFR---GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS---------------------FEPIQILDEAKD  146 (307)
T ss_pred             eeeeecc---cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---------------------CCccchhhhhcC
Confidence            9999999   8999999999996 89999999999999999999833                     357778888899


Q ss_pred             ceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       242 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      .|.++...+..+++|+.||++|.||++.++         ....+-  ..+|++++|++|+  +.+++++.|+.+++.|-.
T Consensus       147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~---------l~sDy~--g~pit~vs~s~d~--nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGT---------LSSDYF--GHPITSVSFSKDG--NCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             ceeEEEecccEEEeeccCCcEEEEEeecce---------eehhhc--CCcceeEEecCCC--CEEEEeeccceeeecccc
Confidence            999999999999999999999999999887         333333  3489999999999  678899999999999999


Q ss_pred             CCCcceee
Q 019117          322 SSPPVLIA  329 (346)
Q Consensus       322 ~~~~~~~~  329 (346)
                      +|+++..+
T Consensus       214 tGklL~sY  221 (307)
T KOG0316|consen  214 TGKLLKSY  221 (307)
T ss_pred             hhHHHHHh
Confidence            99876543

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.6e-30  Score=221.57  Aligned_cols=239  Identities=13%  Similarity=0.162  Sum_probs=175.8

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC-CCcEEEEeecCCeEEEEEccCcc--------eeeeeccCCCc
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDS  130 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~  130 (346)
                      +.+|+......+..+.     .|...|.+++|+  |+ +. +|++|+.||+|+|||+.++.        .+..+.+|...
T Consensus        56 I~L~~~~r~~~v~~L~-----gH~~~V~~lafs--P~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         56 IRLENQMRKPPVIKLK-----GHTSSILDLQFN--PCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             EEeeecCCCceEEEEc-----CCCCCEEEEEEc--CCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            8888866554444443     378889888887  75 45 99999999999999997642        34467889999


Q ss_pred             eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccccee
Q 019117          131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY  210 (346)
Q Consensus       131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  210 (346)
                      |.+++|+|....+|++++.|++|++||+++++.+..+.    |...|.+++|+| ++.+|++++.|+.|++||+++    
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs----  198 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK----  198 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC----
Confidence            99999999444466899999999999999998877775    667899999999 899999999999999999998    


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEE-----ec--CCEEEEEeecC----eEEEEcCCCCCCCCCCccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-----WL--GDFILSKSVDN----EIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~--~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~  279 (346)
                                         ...+..+..|.+.+.+..     |+  ++++++++.|+    .|+|||++....       
T Consensus       199 -------------------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-------  252 (568)
T PTZ00420        199 -------------------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-------  252 (568)
T ss_pred             -------------------CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-------
Confidence                               334566777877643322     22  57889888774    799999986431       


Q ss_pred             ccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee--eeeeeeEEEEEecCCC
Q 019117          280 DILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI--ARLICFSLHVKYNPQS  344 (346)
Q Consensus       280 ~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~spdg  344 (346)
                       ++..+.  .+.+.+...-..+++  .++++|+.|+.|++|++..+.....  +....+...++|.|.-
T Consensus       253 -pl~~~~ld~~~~~L~p~~D~~tg--~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        253 -ALVTMSIDNASAPLIPHYDESTG--LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             -ceEEEEecCCccceEEeeeCCCC--CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence             333322  222333333333445  6899999999999999987753322  2223345678888864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=7.5e-32  Score=214.93  Aligned_cols=282  Identities=15%  Similarity=0.204  Sum_probs=212.6

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ......|++|+..|.++++.|    .|..|++|+.|. |++||+..... .+.++... +.....|.++.|+  +.|. .
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys--~Tg~-~  228 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYS--VTGD-Q  228 (641)
T ss_pred             ccceEeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeec--CCCC-e
Confidence            345556789999999999999    899999999999 99999875432 22222221 2245677778777  7787 6


Q ss_pred             EEEeecCCeEEEEEccCccee------------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEe
Q 019117          101 LVAGGINGIIRVIDVSNEKLH------------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIF  167 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~  167 (346)
                      |++.+.....+|+|-+..+..            ..-++|...++|.+|+|.+...|++++.||++++||+...+ .+..+
T Consensus       229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi  308 (641)
T KOG0772|consen  229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI  308 (641)
T ss_pred             EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence            666666788999995443322            23367999999999999888999999999999999997543 33444


Q ss_pred             cc--cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--ce
Q 019117          168 AG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YV  243 (346)
Q Consensus       168 ~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i  243 (346)
                      +.  ..+..-.++.++|+| ++.+|++|..||.|.+|+.+....                    ......-..|..  .|
T Consensus       309 k~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v--------------------~p~~~vk~AH~~g~~I  367 (641)
T KOG0772|consen  309 KTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV--------------------RPVMKVKDAHLPGQDI  367 (641)
T ss_pred             eeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc--------------------ccceEeeeccCCCCce
Confidence            32  224456789999999 999999999999999999876221                    223344556777  89


Q ss_pred             EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcC------CC
Q 019117          244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNR------EG  313 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~------dg  313 (346)
                      +||.|+  |++|++-+.|+++++||++..+.        ++....+-  .-+-+.++|||+.  +++++|+.      .|
T Consensus       368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk--------pL~~~tgL~t~~~~tdc~FSPd~--kli~TGtS~~~~~~~g  437 (641)
T KOG0772|consen  368 TSISFSYDGNYLLSRGFDDTLKVWDLRQFKK--------PLNVRTGLPTPFPGTDCCFSPDD--KLILTGTSAPNGMTAG  437 (641)
T ss_pred             eEEEeccccchhhhccCCCceeeeecccccc--------chhhhcCCCccCCCCccccCCCc--eEEEecccccCCCCCc
Confidence            999999  99999999999999999998763        44433331  1245678999999  68888863      56


Q ss_pred             cEEEEEcCCCCcceeeeeee-eEEEEEecCC
Q 019117          314 KIFVWELQSSPPVLIARLIC-FSLHVKYNPQ  343 (346)
Q Consensus       314 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~spd  343 (346)
                      .+.+||..+.+.+..+.+.. .+..+.|+|-
T Consensus       438 ~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  438 TLFFFDRMTLDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             eEEEEeccceeeEEEecCCCceEEEEeecch
Confidence            89999999988777666554 5778899883

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.6e-31  Score=238.70  Aligned_cols=253  Identities=16%  Similarity=0.213  Sum_probs=200.1

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCe
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGI  109 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~  109 (346)
                      +...|.+++|+|.   .+.+||+++.|+ |++||+.+++.+..+..     |...|++++|.  | ++. +|++|+.||.
T Consensus       531 ~~~~v~~l~~~~~---~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-----H~~~V~~l~~~--p~~~~-~L~Sgs~Dg~  599 (793)
T PLN00181        531 SRSKLSGICWNSY---IKSQVASSNFEGVVQVWDVARSQLVTEMKE-----HEKRVWSIDYS--SADPT-LLASGSDDGS  599 (793)
T ss_pred             ccCceeeEEeccC---CCCEEEEEeCCCeEEEEECCCCeEEEEecC-----CCCCEEEEEEc--CCCCC-EEEEEcCCCE
Confidence            3467999999983   367899999998 99999988877666543     77889888886  5 566 9999999999


Q ss_pred             EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCc
Q 019117          110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      |++||+.+++.+..+..+ ..|.++.|++.++.+|++|+.||.|++||+++.+ .+..+.   +|...|.++.|.  ++.
T Consensus       600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~--~~~  673 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV--DSS  673 (793)
T ss_pred             EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe--CCC
Confidence            999999999888888754 6799999976578999999999999999998765 455665   799999999997  567


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  266 (346)
                      ++++++.|++|++||++.....                 ....++..+.+|...+.++.|+  +.+|++|+.|+.|++|+
T Consensus       674 ~lvs~s~D~~ikiWd~~~~~~~-----------------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        674 TLVSSSTDNTLKLWDLSMSISG-----------------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             EEEEEECCCEEEEEeCCCCccc-----------------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            8999999999999999752100                 0123566788899999999998  78999999999999999


Q ss_pred             CCCCCCCCCC--cccccc--ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          267 PKMKEQSPGE--GTADIL--QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       267 ~~~~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      ..........  .....+  .....+...|.+++|+|++  ..|++|+.||.|+||++
T Consensus       737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~--~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS--STLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC--CeEEEecCCCcEEEEec
Confidence            8755321000  000011  1123345679999999999  78999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=191.82  Aligned_cols=206  Identities=23%  Similarity=0.428  Sum_probs=176.9

Q ss_pred             CCccceEEEEEEEcCC-CCcEEEEeecCCeEEEEEccCc---ceeeee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEE
Q 019117           81 DKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNE---KLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRL  155 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  155 (346)
                      .|.+.+..++|.  |- |. .||+++.|..|++|+...+   .+...+ .+|+..|.+++|+| .+++|++++.|.++.|
T Consensus        12 gh~~r~W~~awh--p~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen   12 GHKDRVWSVAWH--PGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI   87 (312)
T ss_pred             CCCCcEEEEEec--cCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence            477789999987  66 77 9999999999999998753   233333 36999999999999 8999999999999999


Q ss_pred             EecCCC--eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          156 WNVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       156 wd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      |.-..+  +++..+.   +|+..|.+++|++ ++++|++++.|+.|-||.+.....                    -...
T Consensus        88 w~k~~~efecv~~lE---GHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------------------fec~  143 (312)
T KOG0645|consen   88 WKKEDGEFECVATLE---GHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------------------FECI  143 (312)
T ss_pred             eecCCCceeEEeeee---ccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------------------EEEE
Confidence            986543  5667777   8999999999998 999999999999999999985221                    3456


Q ss_pred             EEEeecccceEEEEecC--CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          234 FIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      ..+..|...|..+.|++  .+|++++.|++|++|+-....      ...+.+++.+|...|++++|++.|  ..|++++.
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd------dW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sd  215 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD------DWECVQTLDGHENTVWSLAFDNIG--SRLVSCSD  215 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC------CeeEEEEecCccceEEEEEecCCC--ceEEEecC
Confidence            78899999999999995  899999999999999877432      455889999999999999999999  68999999


Q ss_pred             CCcEEEEEcCC
Q 019117          312 EGKIFVWELQS  322 (346)
Q Consensus       312 dg~i~iwd~~~  322 (346)
                      |+.++||...+
T Consensus       216 D~tv~Iw~~~~  226 (312)
T KOG0645|consen  216 DGTVSIWRLYT  226 (312)
T ss_pred             CcceEeeeecc
Confidence            99999999653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=216.96  Aligned_cols=233  Identities=19%  Similarity=0.341  Sum_probs=194.3

Q ss_pred             cCCCccceEEEEEEEcC-CCCcEEEEeecCCeEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEE
Q 019117           79 DEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW  156 (346)
Q Consensus        79 ~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  156 (346)
                      ..+|...|.++.|.  | .+. +|++++.|+.|+||++.. +++++++.+|..+|.+++|++ .+..|++++.|+.|++|
T Consensus       210 ~~gH~kgvsai~~f--p~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWF--PKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLW  285 (503)
T ss_pred             ccCCccccchhhhc--cceee-EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeee
Confidence            34588999999998  6 555 999999999999999876 889999999999999999999 89999999999999999


Q ss_pred             ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      |+++|+++..+.    ....++|+.|+|++.+.+++|+.|+.|+.||+++                       +..+..+
T Consensus       286 DtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------------------~kvvqeY  338 (503)
T KOG0282|consen  286 DTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------------------GKVVQEY  338 (503)
T ss_pred             ccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------------------hHHHHHH
Confidence            999999999997    6778999999996669999999999999999999                       4456677


Q ss_pred             eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC-------------------------------------c
Q 019117          237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-------------------------------------G  277 (346)
Q Consensus       237 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------------------------~  277 (346)
                      ..|-+.|..+.|-  +.++++.+.|++++||+.+..-.....                                     -
T Consensus       339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence            7888999999997  889999999999999998765431110                                     0


Q ss_pred             cccccccccCCC--cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEEEEecCCC
Q 019117          278 TADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQS  344 (346)
Q Consensus       278 ~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg  344 (346)
                      .......+.+|.  +--..+.|||||  .+|++|..||.+.+||.++-+.+...+.. +.+..+.|.|-.
T Consensus       419 r~nkkK~feGh~vaGys~~v~fSpDG--~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  419 RLNKKKRFEGHSVAGYSCQVDFSPDG--RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             ccCHhhhhcceeccCceeeEEEcCCC--CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence            111223344553  345678999999  79999999999999999998766655443 668889999854

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-31  Score=216.20  Aligned_cols=251  Identities=23%  Similarity=0.370  Sum_probs=210.5

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc-
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-  126 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  126 (346)
                      ..+.||+|....|++|+..++........     ..+.|+++.|+  ++|. +|++|..+|.|.|||..+.+.+..+.+ 
T Consensus       187 s~n~laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws--~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  187 SANVLAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWS--PDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             cCCeEEEEecceEEEEecCCCceEEeEec-----CCCceEEEEEC--CCCC-EEEEeecCCeEEEEehhhccccccccCC
Confidence            36799999888899999888775444432     36788888888  9999 999999999999999999999999998 


Q ss_pred             CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE-ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                      |...|.+++|+   ...+.+|+.|+.|..+|++..+.... +.   +|...|..+.|++ ++.++++|+.|+.+.|||..
T Consensus       259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~---~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQ---GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhh---cccceeeeeEECC-CCCeeccCCCccceEeccCC
Confidence            99999999996   47999999999999999998876666 55   7999999999998 99999999999999999996


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee--cCeEEEEcCCCCCCCCCCcccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV--DNEIVLWEPKMKEQSPGEGTAD  280 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~  280 (346)
                      .                       ..+...+..|...|.+++|+   ..+||+|+.  |+.|++||..+++         
T Consensus       332 ~-----------------------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------  379 (484)
T KOG0305|consen  332 S-----------------------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------  379 (484)
T ss_pred             C-----------------------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------
Confidence            6                       56788999999999999999   779999865  9999999999887         


Q ss_pred             ccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEEEecCCCCC
Q 019117          281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       281 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~spdg~~  346 (346)
                      .+..... ...|..|.|++..++-....|..++.|.||+..+.+++. ...+...+..+++||||.+
T Consensus       380 ~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  380 RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET  445 (484)
T ss_pred             Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence            4444433 458999999999853233335578899999999966544 3345556899999999863

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=200.29  Aligned_cols=273  Identities=16%  Similarity=0.268  Sum_probs=231.2

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      -.+++.+.|.||++.|+.++-..    ...++.+++.|. -+||.++++.++..+.+     |.+.|.++.|.  +.+. 
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-----H~GSVNsikfh--~s~~-  203 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATYTG-----HTGSVNSIKFH--NSGL-  203 (481)
T ss_pred             eeEeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeeecc-----cccceeeEEec--cccc-
Confidence            46778888999999999999876    456999999998 99999999999888875     78889999887  7787 


Q ss_pred             EEEEeecCCeEEEEEcc------C----------------------------------cceeeeeccCCCceEEEEEeCC
Q 019117          100 FLVAGGINGIIRVIDVS------N----------------------------------EKLHKSFVGHGDSINEIRTQPL  139 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~------~----------------------------------~~~~~~~~~~~~~v~~~~~~~~  139 (346)
                      ++++++.|++-.||...      .                                  ..++..+.+|.+.|.+..|.. 
T Consensus       204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-  282 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-  282 (481)
T ss_pred             eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-
Confidence            99999999999999721      0                                  013456778999999999998 


Q ss_pred             CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecC
Q 019117          140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  219 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  219 (346)
                      +++.+++++.|.+-.+||+++++.+..+.   +|....+.++-+| ..+++++++.|.+.++||++..            
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea------------  346 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA------------  346 (481)
T ss_pred             CcceeeeeeccccceeeeeccCceecccc---CcchhccccccCC-cceEEEEeccCceeEeccchhh------------
Confidence            99999999999999999999999999999   8999999999999 8999999999999999999971            


Q ss_pred             CCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117          220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  298 (346)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  298 (346)
                                ...+..+.+|.+.|+++.|. +..+++|+.|.+|++||+++.+.        ++.++.. ..++..++.+
T Consensus       347 ----------I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--------plATIRt-dS~~NRvavs  407 (481)
T KOG0300|consen  347 ----------IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--------PLATIRT-DSPANRVAVS  407 (481)
T ss_pred             ----------cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC--------cceeeec-CCccceeEee
Confidence                      34567889999999999999 99999999999999999998762        5555544 3578889999


Q ss_pred             ecCCcceEEEEcCCCcEEEEEcCCCCcceee-----eeeeeEEEEEecCC
Q 019117          299 CDFHYNAAAIGNREGKIFVWELQSSPPVLIA-----RLICFSLHVKYNPQ  343 (346)
Q Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~spd  343 (346)
                      ..+  .+++.--.+..|++||+.........     .+...+.|++|.-+
T Consensus       408 ~g~--~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  408 KGH--PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             cCC--ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence            877  68999999999999999876643322     22334788998754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.3e-32  Score=205.54  Aligned_cols=254  Identities=17%  Similarity=0.204  Sum_probs=207.7

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeec---CCCccceEEEEEEEcCCCCcEEEEee
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVD---EDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .+.++.+-|..|||    ||++|++|+-|+ |.+||..+|+..+.++-...   -.++..|.|++|+  .|.. .|++|+
T Consensus       210 Fg~KSh~EcA~FSP----DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS--RDsE-MlAsGs  282 (508)
T KOG0275|consen  210 FGQKSHVECARFSP----DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS--RDSE-MLASGS  282 (508)
T ss_pred             cccccchhheeeCC----CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec--ccHH-HhhccC
Confidence            35567788999999    899999999999 99999999887665542211   1256778777665  8888 999999


Q ss_pred             cCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          106 INGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      .||.|++|.+.+|.+++.+. +|+..|+++.|+. ++..+++++.|.++++--+.+|++++.++   +|.+.|+...|.+
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~ft~  358 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATFTD  358 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhc---CccccccceEEcC
Confidence            99999999999999999987 8999999999999 88899999999999999999999999999   8999999999998


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe--ecccceEEEEec---CCEEEEEeec
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL---GDFILSKSVD  259 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~l~~~~~d  259 (346)
                       +|..+++++.||+|++|+..+..                       ++.++.  +....|.++..-   +..++++...
T Consensus       359 -dG~~iisaSsDgtvkvW~~Ktte-----------------------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  359 -DGHHIISASSDGTVKVWHGKTTE-----------------------CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             -CCCeEEEecCCccEEEecCcchh-----------------------hhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence             99999999999999999998832                       222221  223344444443   6789999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      ++|.|.++...          .++.+..   ..+...+.+.||.|  .++.+.++|+.++.|.+.+|+......
T Consensus       415 ntv~imn~qGQ----------vVrsfsSGkREgGdFi~~~lSpkG--ewiYcigED~vlYCF~~~sG~LE~tl~  476 (508)
T KOG0275|consen  415 NTVYIMNMQGQ----------VVRSFSSGKREGGDFINAILSPKG--EWIYCIGEDGVLYCFSVLSGKLERTLP  476 (508)
T ss_pred             CeEEEEeccce----------EEeeeccCCccCCceEEEEecCCC--cEEEEEccCcEEEEEEeecCceeeeee
Confidence            99999998753          3444432   24567778899999  799999999999999999998655443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-31  Score=215.48  Aligned_cols=242  Identities=17%  Similarity=0.276  Sum_probs=207.7

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      +.+.|+++.|++    +|.+||+|..++ |.|||..+.+.+..+...    |...|.+++|.    +. .+.+|+.++.|
T Consensus       216 ~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~----h~~rvg~laW~----~~-~lssGsr~~~I  282 (484)
T KOG0305|consen  216 GEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS----HASRVGSLAWN----SS-VLSSGSRDGKI  282 (484)
T ss_pred             CCCceEEEEECC----CCCEEEEeecCCeEEEEehhhccccccccCC----cCceeEEEecc----Cc-eEEEecCCCcE
Confidence            388999999999    899999999999 999999888887777643    78889999996    33 89999999999


Q ss_pred             EEEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          111 RVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       111 ~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      ..+|++..+.... +.+|...|..++|++ ++.++++|+.|+.+.|||....+++..+.   .|..+|.+++|+|....+
T Consensus       283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~l  358 (484)
T KOG0305|consen  283 LNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGL  358 (484)
T ss_pred             EEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCc
Confidence            9999998875544 889999999999999 99999999999999999998888888888   799999999999988899


Q ss_pred             EEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C-CEEEEEe-ecCeEE
Q 019117          190 IASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKS-VDNEIV  263 (346)
Q Consensus       190 l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~-~d~~i~  263 (346)
                      |++|+  .|+.|++||..++                       ..+... .....|.+|.|+  . +++.+-+ .++.|.
T Consensus       359 LAsGGGs~D~~i~fwn~~~g-----------------------~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~  414 (484)
T KOG0305|consen  359 LATGGGSADRCIKFWNTNTG-----------------------ARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQIT  414 (484)
T ss_pred             eEEcCCCcccEEEEEEcCCC-----------------------cEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence            99975  5899999999983                       223333 245679999999  3 3444433 377899


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      ||+..+.+         .+..+.+|...|..++++||+  ..+++|+.|.++++|++-+..+
T Consensus       415 lw~~ps~~---------~~~~l~gH~~RVl~la~SPdg--~~i~t~a~DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  415 LWKYPSMK---------LVAELLGHTSRVLYLALSPDG--ETIVTGAADETLRFWNLFDERP  465 (484)
T ss_pred             EEeccccc---------eeeeecCCcceeEEEEECCCC--CEEEEecccCcEEeccccCCCC
Confidence            99999866         788999999999999999999  7899999999999999988543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-32  Score=197.13  Aligned_cols=266  Identities=13%  Similarity=0.202  Sum_probs=220.1

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      -.||..+|-.++|||.-| +|-+|++++.|+ =.+-+-.+|.-+.++.+     |.+.|+..++.  .+.. ..++++.|
T Consensus        10 c~ghtrpvvdl~~s~itp-~g~flisa~kd~~pmlr~g~tgdwigtfeg-----hkgavw~~~l~--~na~-~aasaaad   80 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITP-DGYFLISASKDGKPMLRNGDTGDWIGTFEG-----HKGAVWSATLN--KNAT-RAASAAAD   80 (334)
T ss_pred             EcCCCcceeEEeccCCCC-CceEEEEeccCCCchhccCCCCCcEEeeec-----cCcceeeeecC--chhh-hhhhhccc
Confidence            479999999999999655 899999999998 55666667887777765     78888887775  5555 78899999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      -+-++||.-+|..+..+. |.-.|..++|+. +.++|++|+.+..++|||++..+ +..++.   +|.+.|+.+.|.. .
T Consensus        81 ftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg~Ir~v~wc~-e  154 (334)
T KOG0278|consen   81 FTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTGGIRTVLWCH-E  154 (334)
T ss_pred             chhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc---CCCCcceeEEEec-c
Confidence            999999999999999887 889999999999 89999999999999999997654 344555   8999999999997 7


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW  265 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iw  265 (346)
                      .+.+++++.|++||+||.+++                       ..+.++. -+..|+++.++ ...+++-...+.|.+|
T Consensus       155 D~~iLSSadd~tVRLWD~rTg-----------------------t~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fw  210 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTG-----------------------TEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFW  210 (334)
T ss_pred             CceEEeeccCCceEEEEeccC-----------------------cEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEe
Confidence            888999899999999999993                       3344443 34567888887 4455666677889999


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQ  343 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spd  343 (346)
                      |.++..         ++..+..+ ..|.+..++|+.  ..+++|++|..++.||..+++-+..+  .+.+++.++.|+||
T Consensus       211 daksf~---------~lKs~k~P-~nV~SASL~P~k--~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd  278 (334)
T KOG0278|consen  211 DAKSFG---------LLKSYKMP-CNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD  278 (334)
T ss_pred             cccccc---------ceeeccCc-cccccccccCCC--ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence            999876         56666654 478899999998  68999999999999999999866653  45677999999999


Q ss_pred             CC
Q 019117          344 SV  345 (346)
Q Consensus       344 g~  345 (346)
                      |.
T Consensus       279 GE  280 (334)
T KOG0278|consen  279 GE  280 (334)
T ss_pred             Cc
Confidence            95

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.4e-29  Score=214.76  Aligned_cols=249  Identities=14%  Similarity=0.139  Sum_probs=181.8

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee----eeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      .+.+|.+.|++++|+|.   ++.+||+++.|+ |++||+.++...    ..+..+  ..|...|.+++|.  |++.++|+
T Consensus        70 ~l~GH~~~V~~v~fsP~---d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~--P~~~~iLa  142 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPF---DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFH--PSAMNVLA  142 (493)
T ss_pred             eEeCCCCCEEEEEEcCC---CCCEEEEEeCCCEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeC--cCCCCEEE
Confidence            46899999999999983   357999999999 999998765321    112222  2377889888887  76544999


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc-eEEEE
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE-VLSVD  181 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~  181 (346)
                      +++.|++|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+.   +|.+. +..+.
T Consensus       143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~  218 (493)
T PTZ00421        143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCL  218 (493)
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEE
Confidence            999999999999999999999999999999999999 89999999999999999999999888887   67654 45677


Q ss_pred             ecCCCCcEEEEEe----cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEE
Q 019117          182 FHPSDIYRIASCG----MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFIL  254 (346)
Q Consensus       182 ~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~  254 (346)
                      |.+ ++..+++++    .|+.|++||+++...                      ++.....+. ..+....|+  +++|+
T Consensus       219 w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------p~~~~~~d~~~~~~~~~~d~d~~~L~  275 (493)
T PTZ00421        219 WAK-RKDLIITLGCSKSQQRQIMLWDTRKMAS----------------------PYSTVDLDQSSALFIPFFDEDTNLLY  275 (493)
T ss_pred             EcC-CCCeEEEEecCCCCCCeEEEEeCCCCCC----------------------ceeEeccCCCCceEEEEEcCCCCEEE
Confidence            888 666666654    478999999987321                      222222222 234444555  77888


Q ss_pred             EEe-ecCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          255 SKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       255 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +++ .|+.|++||+.+++.         +..... ...++..++|.|..    .+-...--..++|.+...
T Consensus       276 lggkgDg~Iriwdl~~~~~---------~~~~~~~s~~~~~g~~~~pk~----~~dv~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        276 IGSKGEGNIRCFELMNERL---------TFCSSYSSVEPHKGLCMMPKW----SLDTRKCEIARFYALTYH  333 (493)
T ss_pred             EEEeCCCeEEEEEeeCCce---------EEEeeccCCCCCcceEecccc----cccccceeeeEEEEecCC
Confidence            887 499999999998762         222222 33467788888854    222222234466766543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=4.4e-30  Score=191.76  Aligned_cols=274  Identities=11%  Similarity=0.158  Sum_probs=204.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ..-.+.|.+|+|||.   ...+++.++-|+ |++|++... ......    ...+.++|.+++|+  .||. .+++|+.|
T Consensus        24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~Ws--ddgs-kVf~g~~D   93 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWS--DDGS-KVFSGGCD   93 (347)
T ss_pred             CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCcccchh----hhccCCCeEEEEEc--cCCc-eEEeeccC
Confidence            345788999999992   456777788777 999999874 332211    12378899989888  8887 99999999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc--eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      +.+++||+.+++ +..+..|.++|..+.|-+ ...  .|++||.|.+|+.||.+...++..+.    ..+.++++..-  
T Consensus        94 k~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----LPeRvYa~Dv~--  165 (347)
T KOG0647|consen   94 KQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----LPERVYAADVL--  165 (347)
T ss_pred             CceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee----ccceeeehhcc--
Confidence            999999999995 566777999999999988 555  89999999999999999999999987    77888888764  


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                       ..+++.+..++.|.+|++++........                     ...-.-.++|++..  .+..+.|+-+|.+-
T Consensus       166 -~pm~vVata~r~i~vynL~n~~te~k~~---------------------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  166 -YPMAVVATAERHIAVYNLENPPTEFKRI---------------------ESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             -CceeEEEecCCcEEEEEcCCCcchhhhh---------------------cCcccceeeEEEEEecCCceEeeeecceEE
Confidence             3578888899999999998733211110                     00012234555544  56679999999999


Q ss_pred             EEcCCCCCCCCCCcccccccc---ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeEEEEE
Q 019117          264 LWEPKMKEQSPGEGTADILQK---YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFSLHVK  339 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~  339 (346)
                      |..++...+...... .+-+.   ....-..|.+++|+|..  ..|++.+.||.+.+||-.....+.. ..+...+++..
T Consensus       224 iq~id~~~~~~nFtF-kCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~  300 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTF-KCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS  300 (347)
T ss_pred             EEecCCCCccCceeE-EEeccCCCCCCceEEecceEeeccc--ceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence            999988643111110 01111   01112368889999976  6899999999999999887665554 56677899999


Q ss_pred             ecCCCCC
Q 019117          340 YNPQSVY  346 (346)
Q Consensus       340 ~spdg~~  346 (346)
                      |+.+|.+
T Consensus       301 fn~~G~i  307 (347)
T KOG0647|consen  301 FNRNGSI  307 (347)
T ss_pred             ecCCCCE
Confidence            9999974

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.6e-31  Score=204.22  Aligned_cols=251  Identities=14%  Similarity=0.242  Sum_probs=204.7

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ..+..|.||.+.|.|++=+|.   .-..+|+|+.|| |+|||+....+...+..     |.+.|..+++..    . .++
T Consensus        57 PFv~~L~gHrdGV~~lakhp~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-----H~G~V~Gi~v~~----~-~~~  123 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPN---KLSTVASGSCDGEVKIWNLSQRECIRTFKA-----HEGLVRGICVTQ----T-SFF  123 (433)
T ss_pred             cchhhccccccccchhhcCcc---hhhhhhccccCceEEEEehhhhhhhheeec-----ccCceeeEEecc----c-ceE
Confidence            345677999999999999982   236899999999 99999999888888875     677788888763    2 677


Q ss_pred             EeecCCeEEEEEcc--------------------------------------CcceeeeeccCCCceEEEEEeCCCCceE
Q 019117          103 AGGINGIIRVIDVS--------------------------------------NEKLHKSFVGHGDSINEIRTQPLKPSLV  144 (346)
Q Consensus       103 ~~~~dg~i~iwd~~--------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l  144 (346)
                      +++.|.+|+.|.+.                                      ...+++.+.--.+.|.++.|+|.....|
T Consensus       124 tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL  203 (433)
T KOG0268|consen  124 TVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL  203 (433)
T ss_pred             EecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence            88888888888632                                      1123333333446788999999888889


Q ss_pred             EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117          145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  224 (346)
Q Consensus       145 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (346)
                      ++++.|+.|.+||++++.+++.+.    ..-.-+.++|+| +...+++++.|..+..||++..                 
T Consensus       204 as~~sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-----------------  261 (433)
T KOG0268|consen  204 ASCASDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-----------------  261 (433)
T ss_pred             eeeccCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhh-----------------
Confidence            999999999999999999988876    566778999999 8889999999999999999984                 


Q ss_pred             CCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117          225 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                           ..++.....|...|.+++|+  |+-+++||.|.+|+||..+.+..      .+...+-  .-..|.++.||.|. 
T Consensus       262 -----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S------RdiYhtk--RMq~V~~Vk~S~Ds-  327 (433)
T KOG0268|consen  262 -----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS------RDIYHTK--RMQHVFCVKYSMDS-  327 (433)
T ss_pred             -----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc------hhhhhHh--hhheeeEEEEeccc-
Confidence                 45777888999999999999  99999999999999999988752      1111111  12478999999999 


Q ss_pred             cceEEEEcCCCcEEEEEcCCCC
Q 019117          303 YNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                       .++++||+|+.|++|.....+
T Consensus       328 -kyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  328 -KYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             -cEEEecCCCcceeeeecchhh
Confidence             799999999999999887654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=7.5e-30  Score=187.43  Aligned_cols=228  Identities=14%  Similarity=0.185  Sum_probs=201.9

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                      .|+.+++.+.+.  .+|. +|.+++.|.+..+|-..+|+.+.++.+|++.|+++.... +...+++|+.|.++++||+++
T Consensus         8 GHERplTqiKyN--~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    8 GHERPLTQIKYN--REGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cCccccceEEec--CCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            377888888776  8898 999999999999999989999999999999999999998 889999999999999999999


Q ss_pred             CeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      |+.+..++    ...+|..+.|++ ++++++.+..     .+.|.++|++.....                .....|...
T Consensus        84 Gk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----------------~~s~ep~~k  142 (327)
T KOG0643|consen   84 GKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSD----------------IDSEEPYLK  142 (327)
T ss_pred             CcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhh----------------hcccCceEE
Confidence            99999997    788999999998 8887776643     468999999963211                112456778


Q ss_pred             EeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117          236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  313 (346)
Q Consensus       236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  313 (346)
                      +..+...++..-|.  +++|++|..||.|.+||+++++.        .+.....|...|+.+.+++|.  .++++++.|.
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--------~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dt  212 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--------LVDSDEEHSSKINDLQFSRDR--TYFITGSKDT  212 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--------eeechhhhccccccccccCCc--ceEEecccCc
Confidence            88888999999998  89999999999999999999863        666667788899999999999  7999999999


Q ss_pred             cEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          314 KIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      +-++||+.+-+.+..+....++++.+++|-
T Consensus       213 takl~D~~tl~v~Kty~te~PvN~aaisP~  242 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTERPVNTAAISPL  242 (327)
T ss_pred             cceeeeccceeeEEEeeecccccceecccc
Confidence            999999999999999999999999999994

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.4e-31  Score=220.58  Aligned_cols=231  Identities=18%  Similarity=0.279  Sum_probs=184.0

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-------------------------------------------
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-------------------------------------------  117 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------------------------  117 (346)
                      .|.+.|+++.|+  +||+ |||+|+.||.|+||.+..                                           
T Consensus       265 ah~gaIw~mKFS--~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFS--HDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEEeC--CCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            588999999887  9999 999999999999998744                                           


Q ss_pred             -----------------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          118 -----------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       118 -----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                                       .++++.+.+|.+.|.++.|+.  .++|++++.|.+|++|++...+++..|.    |...|+|+
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcV  415 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCV  415 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEE
Confidence                             022456688999999999996  6899999999999999999999999997    99999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      +|+|.+.+++++|+-|+.|+||++...                        .+.-...-.+-|++++|.  |++.++|+.
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~------------------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~  471 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDK------------------------KVVDWNDLRDLITAVCYSPDGKGAVIGTF  471 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcC------------------------eeEeehhhhhhheeEEeccCCceEEEEEe
Confidence            999999999999999999999999872                        222333334789999998  999999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee---eeE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---CFS  335 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~  335 (346)
                      +|.+++|+....+.......... ..-+.....|+++.|.|... ..+++.+.|..|+|+|..+.+++..++-.   ...
T Consensus       472 ~G~C~fY~t~~lk~~~~~~I~~~-~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ  549 (712)
T KOG0283|consen  472 NGYCRFYDTEGLKLVSDFHIRLH-NKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ  549 (712)
T ss_pred             ccEEEEEEccCCeEEEeeeEeec-cCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence            99999999988764222111100 11111123899999998765 46778889999999999887766554421   113


Q ss_pred             EEEEecCCCCC
Q 019117          336 LHVKYNPQSVY  346 (346)
Q Consensus       336 ~~~~~spdg~~  346 (346)
                      ....|+.||+|
T Consensus       550 ~~Asfs~Dgk~  560 (712)
T KOG0283|consen  550 ISASFSSDGKH  560 (712)
T ss_pred             eeeeEccCCCE
Confidence            56888899886

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=9e-30  Score=198.94  Aligned_cols=253  Identities=15%  Similarity=0.247  Sum_probs=208.5

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .+.-+.+..|+||...|+.+.|+|    +...+++++.|. |+||.............     |.++|+.+...  |.|.
T Consensus       248 ~~s~q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws~~~~s~~~~~~~-----h~~~V~~ls~h--~tge  316 (506)
T KOG0289|consen  248 KPSNQILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWSVPLSSEPTSSRP-----HEEPVTGLSLH--PTGE  316 (506)
T ss_pred             cchhhhhhhccCcceEEEEEEecc----chhheeecCCcceEEeeccccccCcccccc-----ccccceeeeec--cCCc
Confidence            345567788899999999999999    678899999998 99999876665444443     78888888776  8898


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                       ||++++.|++....|+.++..+.....  ..-.+++.+|+| ++.+|.+|..|+.|++||+.++..+..|.   +|.++
T Consensus       317 -YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fp---ght~~  391 (506)
T KOG0289|consen  317 -YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFP---GHTGP  391 (506)
T ss_pred             -EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCC---CCCCc
Confidence             999999999999999999998776653  234689999999 99999999999999999999999898998   89999


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      |..++|+. +|.+|+++..|+.|++||+|..+.                     .+...+. ....+.++.|+  |.+|+
T Consensus       392 vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n---------------------~kt~~l~-~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  392 VKAISFSE-NGYWLATAADDGSVKLWDLRKLKN---------------------FKTIQLD-EKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             eeEEEecc-CceEEEEEecCCeEEEEEehhhcc---------------------cceeecc-ccccceeEEEcCCCCeEE
Confidence            99999996 999999999999999999998431                     1111222 12368888887  99999


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      .++.|=.|++++-.+..       ...+..+..|.+..+.+.|..+.  .++++++.|..++++.+
T Consensus       449 ~~g~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  449 IAGSDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRLYAL  505 (506)
T ss_pred             eecceeEEEEEeccccc-------ceeeehhhhcccccceeeecccc--eEEeeccchhheEEeec
Confidence            99888777777754432       33667777788889999999888  69999999999888764

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=6.2e-29  Score=211.89  Aligned_cols=235  Identities=13%  Similarity=0.154  Sum_probs=174.3

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-ee----eEeeeecCCCccceEEEEEEEcCCC
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IA----ALQSYVDEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-~~----~~~~~~~~~~~~~v~~~~~~~~~~~   97 (346)
                      .....+.+|.++|.+++|+|.   ++.+||+|+.|+ |+|||+.++.. ..    .+..+  ..|...|.+++|.  |++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~---~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~--P~g  137 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPC---FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWN--PMN  137 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCC---CCCEEEEEeCCCeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEEC--CCC
Confidence            456678999999999999992   268999999999 99999876432 11    11111  2377889888887  877


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      ..+|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+.   +|.+.+
T Consensus       138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~  212 (568)
T PTZ00420        138 YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGK  212 (568)
T ss_pred             CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCc
Confidence            7467899999999999999998777776 667899999999 89999999999999999999999998887   787765


Q ss_pred             EEE-----EecCCCCcEEEEEecCC----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cccceEEE
Q 019117          178 LSV-----DFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCN  246 (346)
Q Consensus       178 ~~~-----~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~  246 (346)
                      ...     .|++ ++.++++++.|+    .|++||++...                      .++.....  +...+...
T Consensus       213 ~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~----------------------~pl~~~~ld~~~~~L~p~  269 (568)
T PTZ00420        213 NTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTT----------------------SALVTMSIDNASAPLIPH  269 (568)
T ss_pred             eeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCC----------------------CceEEEEecCCccceEEe
Confidence            432     3456 777888887764    79999999622                      22322222  22222222


Q ss_pred             Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117          247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                      ...  +.++++|+.|++|++|++..+..       ..+..+. +..+..+++|.|..
T Consensus       270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~~-------~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        270 YDESTGLIYLIGKGDGNCRYYQHSLGSI-------RKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeCCCCCEEEEEECCCeEEEEEccCCcE-------Eeecccc-cCCCccceEEcccc
Confidence            112  77899999999999999976531       1233333 45678889999975

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=4.4e-30  Score=211.63  Aligned_cols=267  Identities=19%  Similarity=0.253  Sum_probs=218.1

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEE-EEEEEcCCCC
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~   98 (346)
                      ..|++.+.+.||...|..+++.+     +..+++++.|+ +++|+-...+.+.... +  ..+.+-+.. +++.. .++.
T Consensus         2 ~~Y~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~-~--~~~~g~i~~~i~y~e-~~~~   72 (745)
T KOG0301|consen    2 PQYKLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHA-F--EGPKGFIANSICYAE-SDKG   72 (745)
T ss_pred             CcceeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCccccccee-c--ccCcceeeccceecc-ccCc
Confidence            35788999999999999999875     56889999888 9999965444333211 1  224444444 55553 2333


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                       .+++|+.|.+|.+|...+..+...+++|...|.++.... ++. +++||.|.++++|..  +++...+.   +|+..|.
T Consensus        73 -~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~---gH~asVW  144 (745)
T KOG0301|consen   73 -RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQ---GHTASVW  144 (745)
T ss_pred             -ceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccC---Ccchhee
Confidence             699999999999999999999999999999999999876 444 999999999999976  56666677   8999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEe
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS  257 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~  257 (346)
                      +++.-| +. .++||+.|.+|++|.-..                         .+.++.+|.+.|+.+++- ...+++++
T Consensus       145 Av~~l~-e~-~~vTgsaDKtIklWk~~~-------------------------~l~tf~gHtD~VRgL~vl~~~~flScs  197 (745)
T KOG0301|consen  145 AVASLP-EN-TYVTGSADKTIKLWKGGT-------------------------LLKTFSGHTDCVRGLAVLDDSHFLSCS  197 (745)
T ss_pred             eeeecC-CC-cEEeccCcceeeeccCCc-------------------------hhhhhccchhheeeeEEecCCCeEeec
Confidence            999998 44 899999999999998755                         577899999999999998 66999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-eEE
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-FSL  336 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~  336 (346)
                      .||.|++|++. ++         .+.++.+|..-|.+++..+++  ..++++++|++++||+..  +..+.+.+++ .++
T Consensus       198 NDg~Ir~w~~~-ge---------~l~~~~ghtn~vYsis~~~~~--~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW  263 (745)
T KOG0301|consen  198 NDGSIRLWDLD-GE---------VLLEMHGHTNFVYSISMALSD--GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIW  263 (745)
T ss_pred             CCceEEEEecc-Cc---------eeeeeeccceEEEEEEecCCC--CeEEEecCCceEEEeecC--ceEEEEecCccceE
Confidence            99999999994 44         788999999999999966666  589999999999999987  6677777776 577


Q ss_pred             EEEecCCCC
Q 019117          337 HVKYNPQSV  345 (346)
Q Consensus       337 ~~~~spdg~  345 (346)
                      ++.+-++|.
T Consensus       264 sa~~L~NgD  272 (745)
T KOG0301|consen  264 SAKVLLNGD  272 (745)
T ss_pred             EEEEeeCCC
Confidence            777666553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=3.5e-29  Score=210.33  Aligned_cols=288  Identities=18%  Similarity=0.177  Sum_probs=227.9

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      +.-+.+.+++++.+.|+++.=+|    --+.+|.|..+| |.+++++.++.+..++.     ..+.|+.++|.  .||.+
T Consensus       190 rt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifNlK~dkil~sFk~-----d~g~VtslSFr--tDG~p  258 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFNLKFDKILMSFKQ-----DWGRVTSLSFR--TDGNP  258 (910)
T ss_pred             ccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEEcccCcEEEEEEc-----cccceeEEEec--cCCCe
Confidence            45678889999999999999998    568999999999 99999999999888872     24788888776  89998


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCC---
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHR---  174 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~---  174 (346)
                      .+++|+..|.+.+||++..+.+..+. .|.+.|....|.| +...+++++.|..+++|=.+++.- -+.++...+|.   
T Consensus       259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp  337 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP  337 (910)
T ss_pred             eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence            99999999999999999888776665 7889999999999 889999999999998885442211 00011111222   


Q ss_pred             --------------------------------------------------------------------------------
Q 019117          175 --------------------------------------------------------------------------------  174 (346)
Q Consensus       175 --------------------------------------------------------------------------------  174 (346)
                                                                                                      
T Consensus       338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~  417 (910)
T KOG1539|consen  338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA  417 (910)
T ss_pred             hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence                                                                                            


Q ss_pred             -------------------------------cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117          175 -------------------------------NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  223 (346)
Q Consensus       175 -------------------------------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (346)
                                                     ..+++++.++ .|++.+.|...|.|-+|++.++                
T Consensus       418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG----------------  480 (910)
T KOG1539|consen  418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG----------------  480 (910)
T ss_pred             ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC----------------
Confidence                                           3455666665 6666666666666666666652                


Q ss_pred             CCCccceeceEEE---eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC-----------------------
Q 019117          224 FPTKYVQFPVFIA---SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG-----------------------  275 (346)
Q Consensus       224 ~~~~~~~~~~~~~---~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~-----------------------  275 (346)
                             ....++   ..|...|+.++.+  ++.+++++.+|-+++||.........                       
T Consensus       481 -------i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  481 -------IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             -------eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence                   222233   5799999999998  77899999999999999987652100                       


Q ss_pred             ---------CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          276 ---------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       276 ---------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                               ......++.+.+|...|++++|||||  ++|++++.|++|++||+.++..+-.+.+......+.|||+|.|
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~  631 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF  631 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence                     01223567888999999999999999  8999999999999999999999999999999999999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.5e-30  Score=204.33  Aligned_cols=231  Identities=19%  Similarity=0.319  Sum_probs=191.6

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----------eeeeeccCCCceEEEEEeCCCCceEEEeeCC
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD  150 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  150 (346)
                      .|.+.|..+...  |....++++.+..+.+.|||..+..          +-..+.+|.+.-.++.|++.....|++++.|
T Consensus       122 ~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            366677666666  7666689999999999999985432          2237788998889999999888899999999


Q ss_pred             CCEEEEecCCCee-------EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117          151 ESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  223 (346)
Q Consensus       151 ~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (346)
                      ++|++||+.....       ...+.   +|...|..++|++....++.+++.|+.+.|||+|...               
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~---~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---------------  261 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFS---GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---------------  261 (422)
T ss_pred             CcEEEEeccccccCCccccceEEee---cCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---------------
Confidence            9999999975432       33444   8999999999999888999999999999999999621               


Q ss_pred             CCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          224 FPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                            ..+......|...|.|++|+   +..||+|+.|++|.+||++..+.        ++..+.+|...|..+.|||+
T Consensus       262 ------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------~lh~~e~H~dev~~V~WSPh  327 (422)
T KOG0264|consen  262 ------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------PLHTFEGHEDEVFQVEWSPH  327 (422)
T ss_pred             ------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------CceeccCCCcceEEEEeCCC
Confidence                  34556778899999999998   67999999999999999998763        78999999999999999999


Q ss_pred             CCcceEEEEcCCCcEEEEEcCCCC------------cceeeeeeee---EEEEEecCCCCC
Q 019117          301 FHYNAAAIGNREGKIFVWELQSSP------------PVLIARLICF---SLHVKYNPQSVY  346 (346)
Q Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~---~~~~~~spdg~~  346 (346)
                      .+ ..||+++.|+.+.+||+..-.            +...+.+.||   |..+.|+|+.++
T Consensus       328 ~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  328 NE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             CC-ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence            87 799999999999999996521            3345666666   677899998653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-30  Score=187.71  Aligned_cols=257  Identities=20%  Similarity=0.277  Sum_probs=198.8

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ..|.+.|-++...-    .|++|||++.|+ |+||....+.....+..+.  .|.++|+.++|+--.-|. +||+++.||
T Consensus         8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--Gh~GPVwqv~wahPk~G~-iLAScsYDg   80 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--GHSGPVWKVAWAHPKFGT-ILASCSYDG   80 (299)
T ss_pred             hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCCceeeeEec--CCCCCeeEEeecccccCc-EeeEeecCc
Confidence            67888888877766    789999999999 9999998776644444432  488999999998444677 999999999


Q ss_pred             eEEEEEccCcc--eeeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          109 IIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       109 ~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      .|.||.-.+++  .......|...|++++|.|.+ +-.|++++.||.|.|.+.+....-..-+....|.-.|++++|.|.
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            99999988775  344567799999999999943 346888999999999998765211111222279999999999982


Q ss_pred             C--C-----------cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC--
Q 019117          186 D--I-----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG--  250 (346)
Q Consensus       186 ~--~-----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  250 (346)
                      .  +           +.|++|+.|..|+||+..+..                     -.....+..|.+.|+.++|.+  
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---------------------w~~e~~l~~H~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---------------------WKLERTLEGHKDWVRDVAWAPSV  219 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcc---------------------hhhhhhhhhcchhhhhhhhcccc
Confidence            1  2           569999999999999998831                     112234889999999999982  


Q ss_pred             ----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          251 ----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       251 ----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                          .++++++.||++.||..+......   ...++..   ....++.+.||+.|  ++|++++.|+.|.+|.-..
T Consensus       220 gl~~s~iAS~SqDg~viIwt~~~e~e~w---k~tll~~---f~~~~w~vSWS~sG--n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  220 GLPKSTIASCSQDGTVIIWTKDEEYEPW---KKTLLEE---FPDVVWRVSWSLSG--NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CCCceeeEEecCCCcEEEEEecCccCcc---ccccccc---CCcceEEEEEeccc--cEEEEecCCcEEEEEEeCC
Confidence                389999999999999887331111   1123333   34579999999999  7999999999999997543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.8e-28  Score=173.73  Aligned_cols=278  Identities=17%  Similarity=0.257  Sum_probs=210.9

Q ss_pred             cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec------cCc----eeeeEeeeecCCCccceE
Q 019117           19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL------EGG----VIAALQSYVDEDKEESFY   87 (346)
Q Consensus        19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~------~~~----~~~~~~~~~~~~~~~~v~   87 (346)
                      .++.|..+..|. ....|.+++|+|    .|.+.|+|+... .+|--..      .+.    ....+.......|.+.|+
T Consensus        19 ~k~~f~~i~~l~-dsqairav~fhp----~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy   93 (350)
T KOG0641|consen   19 EKKHFEAINILE-DSQAIRAVAFHP----AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY   93 (350)
T ss_pred             cccceEEEEEec-chhheeeEEecC----CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence            345666666653 456799999999    789999999887 5554321      111    111222223345889999


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-----eeeeccCCCceEEEEEeCC---CCceEEEee-CCCCEEEEec
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHGDSINEIRTQPL---KPSLVVSAS-KDESVRLWNV  158 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~d~~i~iwd~  158 (346)
                      |.+|+  |.|. +|++|++|.+|++..++...+     -..+.-|.+.|..++|..+   ++.+|++++ .|..|++-|.
T Consensus        94 c~~ws--~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen   94 CTAWS--PCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             EEEec--CccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            99998  9999 999999999999987765432     2356679999999999752   345677665 4677888899


Q ss_pred             CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-
Q 019117          159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-  237 (346)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (346)
                      ..|+....+.   +|.+.|.++- +- ++.++++|+.|.+|++||++-..                       .+..+. 
T Consensus       171 ~~g~~~~a~s---ghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~-----------------------~v~~l~~  222 (350)
T KOG0641|consen  171 GRGQGFHALS---GHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNS-----------------------CVNTLDN  222 (350)
T ss_pred             CCCCcceeec---CCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccc-----------------------eeeeccC
Confidence            9999999988   8999998874 33 78899999999999999999722                       222221 


Q ss_pred             ------ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          238 ------VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       238 ------~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                            .....|.+++.+  |++|++|-.|....+||++.++         .++.+..|...|.++.|||.-  .+|++|
T Consensus       223 ~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---------~iq~f~phsadir~vrfsp~a--~yllt~  291 (350)
T KOG0641|consen  223 DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---------MIQRFHPHSADIRCVRFSPGA--HYLLTC  291 (350)
T ss_pred             cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---------eeeeeCCCccceeEEEeCCCc--eEEEEe
Confidence                  123457777776  8999999999999999999987         789999999999999999998  699999


Q ss_pred             cCCCcEEEEEcCCCC-----cceeeeeeeeEEEEEecCC
Q 019117          310 NREGKIFVWELQSSP-----PVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       310 ~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~spd  343 (346)
                      +.|..|++-|++..-     .....+++..+..+.|.|.
T Consensus       292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             cccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence            999999999997632     1223344555677888875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.4e-29  Score=209.20  Aligned_cols=249  Identities=17%  Similarity=0.259  Sum_probs=216.3

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ...++.+++..  +-+.+..|-|    .+.++++|...| +.+||+.....+..++.     |.+.++.++..  ||++ 
T Consensus       402 ~t~kciRTi~~--~y~l~~~Fvp----gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-----HdgaIWsi~~~--pD~~-  467 (888)
T KOG0306|consen  402 DTLKCIRTITC--GYILASKFVP----GDRYIVLGTKNGELQVFDLASASLVETIRA-----HDGAIWSISLS--PDNK-  467 (888)
T ss_pred             cCcceeEEecc--ccEEEEEecC----CCceEEEeccCCceEEEEeehhhhhhhhhc-----cccceeeeeec--CCCC-
Confidence            34666666643  3788999999    568899998888 99999999988887774     88999999888  9998 


Q ss_pred             EEEEeecCCeEEEEEccC-----cce--e------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117          100 FLVAGGINGIIRVIDVSN-----EKL--H------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~-----~~~--~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                      .+++|+.|.+|++||..-     +..  +      +++. -.+.|.|+.++| ++.+|+.+--|.+|+||-+.+.+....
T Consensus       468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFfls  545 (888)
T KOG0306|consen  468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLS  545 (888)
T ss_pred             ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeee
Confidence            999999999999999732     111  1      1222 357899999999 999999999999999999999888888


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      +-   ||.-+|.|+..+| ++.+++||+.|.+|++|-+.-                       +.+..++-.|.+.|.++
T Consensus       546 LY---GHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF-----------------------GDCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  546 LY---GHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF-----------------------GDCHKSFFAHDDSVMSV  598 (888)
T ss_pred             ec---ccccceeEEeccC-CcCeEEeccCCCceEEecccc-----------------------chhhhhhhcccCceeEE
Confidence            87   8999999999999 999999999999999999887                       55777889999999999


Q ss_pred             Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      .|.  ...+.++|.|+.|+-||-...+         .++.+.+|...|++++.+|+|  .+++++|.|.+|++|.-...
T Consensus       599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe---------~iq~L~~H~~ev~cLav~~~G--~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  599 QFLPKTHLFFTCGKDGKVKQWDGEKFE---------EIQKLDGHHSEVWCLAVSPNG--SFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             EEcccceeEEEecCcceEEeechhhhh---------hheeeccchheeeeeEEcCCC--CeEEeccCCceeEeeeccCc
Confidence            998  5689999999999999998766         789999999999999999999  79999999999999997653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3e-28  Score=175.20  Aligned_cols=258  Identities=14%  Similarity=0.195  Sum_probs=203.9

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC--CCcEEE
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--GIPFLV  102 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~l~  102 (346)
                      .+.-+.|++.|+|++|+|    +|+++|+|+.|. |++.-+....+...=.......|.+.|..++|.-.|.  |. +|+
T Consensus        82 ~kr~khhkgsiyc~~ws~----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~  156 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSP----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILA  156 (350)
T ss_pred             eeeccccCccEEEEEecC----ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEE
Confidence            334477999999999999    899999999998 7776554333222212222234889999999986554  34 666


Q ss_pred             Eee-cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC----CCCcce
Q 019117          103 AGG-INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG----GHRNEV  177 (346)
Q Consensus       103 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v  177 (346)
                      +++ .|..|.+-|..+++..+.+.+|++-|.++---  ++-.+++|+.|.+|++||++-..++..+....    -..+.|
T Consensus       157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence            654 46788888989999999999999998877432  67899999999999999999888888775321    123689


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      .+++..| .+++|++|..|....+||++.                       ..++..+..|...|.|+.|+  ..++++
T Consensus       235 aav~vdp-sgrll~sg~~dssc~lydirg-----------------------~r~iq~f~phsadir~vrfsp~a~yllt  290 (350)
T KOG0641|consen  235 AAVAVDP-SGRLLASGHADSSCMLYDIRG-----------------------GRMIQRFHPHSADIRCVRFSPGAHYLLT  290 (350)
T ss_pred             EEEEECC-CcceeeeccCCCceEEEEeeC-----------------------CceeeeeCCCccceeEEEeCCCceEEEE
Confidence            9999999 999999999999999999998                       56788899999999999999  569999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++.|..|++-|+...-.     +.-++.....|...+..+.|+|..  .-+++.+.|.++.+|-+.
T Consensus       291 ~syd~~ikltdlqgdla-----~el~~~vv~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  291 CSYDMKIKLTDLQGDLA-----HELPIMVVAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN  349 (350)
T ss_pred             ecccceEEEeecccchh-----hcCceEEEEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence            99999999999976421     111233344577788889999987  678899999999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=8.9e-29  Score=185.39  Aligned_cols=263  Identities=14%  Similarity=0.229  Sum_probs=195.9

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      -.+.|..|.|+|.   .+.+||+. -|+ +++|+.........+.      ++.++.+++|.  ++.  .+++|+.||.|
T Consensus        12 P~d~IS~v~f~~~---~~~LLvss-WDgslrlYdv~~~~l~~~~~------~~~plL~c~F~--d~~--~~~~G~~dg~v   77 (323)
T KOG1036|consen   12 PEDGISSVKFSPS---SSDLLVSS-WDGSLRLYDVPANSLKLKFK------HGAPLLDCAFA--DES--TIVTGGLDGQV   77 (323)
T ss_pred             ChhceeeEEEcCc---CCcEEEEe-ccCcEEEEeccchhhhhhee------cCCceeeeecc--CCc--eEEEeccCceE
Confidence            3678999999972   23455555 555 9999988876555554      78888888886  544  69999999999


Q ss_pred             EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      +.+|+.+++... +-.|..+|.+|..++ ....+++|+.|++|++||.+.......+.    ....|.++...   ++.|
T Consensus        78 r~~Dln~~~~~~-igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~---g~~L  148 (323)
T KOG1036|consen   78 RRYDLNTGNEDQ-IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS---GNRL  148 (323)
T ss_pred             EEEEecCCccee-eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc----cCceEEEEecc---CCEE
Confidence            999999887544 455999999999999 88999999999999999999866666665    56689998874   5678


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      +.|+.|..|.+||+++......                  .....+   .-.++|++.-  +.-+++++-||.|.+=.++
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q------------------~reS~l---kyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQ------------------RRESSL---KYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             EEeecCceEEEEEcccccchhh------------------hccccc---eeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            8999999999999999543110                  001112   2234455544  5778899999999987777


Q ss_pred             CCCCCCCCccccccccccCC---------CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEE
Q 019117          269 MKEQSPGEGTADILQKYPVP---------ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHV  338 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~  338 (346)
                      ..+...     .....++.|         --+|.+|+|+|-.  ..|+||+.||.|.+||+.+.+.+. ..+.+..+..+
T Consensus       208 ~s~~~~-----skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl  280 (323)
T KOG1036|consen  208 DSEEAQ-----SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL  280 (323)
T ss_pred             CchHHh-----hhceeEEeeecccCCceEEEEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCCCCceEEE
Confidence            652110     112222222         2479999999986  689999999999999999977554 34455668899


Q ss_pred             EecCCCC
Q 019117          339 KYNPQSV  345 (346)
Q Consensus       339 ~~spdg~  345 (346)
                      +|+-||.
T Consensus       281 sfs~dG~  287 (323)
T KOG1036|consen  281 SFSMDGS  287 (323)
T ss_pred             EeccCCC
Confidence            9999885

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.7e-29  Score=189.61  Aligned_cols=259  Identities=17%  Similarity=0.244  Sum_probs=200.6

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc------------Cc---eeeeEeeeecCCCccceEEE
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE------------GG---VIAALQSYVDEDKEESFYTV   89 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~------------~~---~~~~~~~~~~~~~~~~v~~~   89 (346)
                      ...+..|+.++.+-+|+|    ||.++|+|+.|. |+|+|...            +.   ....++.+  ..|.+.|.++
T Consensus       105 t~ylt~HK~~cR~aafs~----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl--YDH~devn~l  178 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSP----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL--YDHVDEVNDL  178 (430)
T ss_pred             eEEEeecccceeeeeeCC----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh--hhccCcccce
Confidence            445688999999999999    899999999999 99999861            10   00112222  2477888888


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           90 SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      .|.  |... .|++|+.|++|+++|+......+.++  ....+|.++.|+| .+.+|+.|.+--++++||+++-++...-
T Consensus       179 ~FH--Pre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  179 DFH--PRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             eec--chhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeec
Confidence            776  8787 99999999999999997654333222  2567899999999 9999999999999999999999988777


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecc-cceEE
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHS-NYVDC  245 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~  245 (346)
                      ....+|.+.|+++.+++ .+++.++++.||.|++||=.+                       ..++.++. .|. ..|.+
T Consensus       255 nPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS-----------------------~rCv~t~~~AH~gsevcS  310 (430)
T KOG0640|consen  255 NPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS-----------------------NRCVRTIGNAHGGSEVCS  310 (430)
T ss_pred             CcccccccceeEEEecC-CccEEEEeccCCcEEeecccc-----------------------HHHHHHHHhhcCCceeee
Confidence            66668999999999998 999999999999999999877                       22333332 343 45777


Q ss_pred             EEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc---------------------------------------ccccc-c
Q 019117          246 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG---------------------------------------TADIL-Q  283 (346)
Q Consensus       246 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------~~~~~-~  283 (346)
                      ..|.  ++++++.+.|..+++|.+.+++......                                       ....+ .
T Consensus       311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l  390 (430)
T KOG0640|consen  311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL  390 (430)
T ss_pred             EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence            8887  8999999999999999998876411100                                       00000 1


Q ss_pred             cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      --.+|.+.+..+.-||.+  ..+++|+.|-.+++|--
T Consensus       391 ~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  391 LSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cccCCCCCceEEEeCCCC--Cceeeecccceeeeeee
Confidence            113478888999999988  68999999999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.9e-29  Score=216.78  Aligned_cols=257  Identities=15%  Similarity=0.161  Sum_probs=205.9

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC---------------ceeeeEeeeecCCCccceE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG---------------GVIAALQSYVDEDKEESFY   87 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~---------------~~~~~~~~~~~~~~~~~v~   87 (346)
                      +++.+...|.+.|+|+.|+|    ||++||+|++|+ |.||.....               +..+.+..+  ..|...|.
T Consensus        60 k~l~~m~~h~~sv~CVR~S~----dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l--~~H~~DV~  133 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSP----DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL--RGHDSDVL  133 (942)
T ss_pred             hhheeeccccCceeEEEECC----CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE--ecCCCccc
Confidence            45566688999999999999    899999999999 999997730               011222222  23888999


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      .++|+  |++. +|++++.|++|.||+..+.+.+..+.+|.+.|..+.|.| -+++|++-++|++|++|++.+-...+.+
T Consensus       134 Dv~Ws--p~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  134 DVNWS--PDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             eeccC--CCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee
Confidence            99998  8898 999999999999999999999999999999999999999 8999999999999999998776666666


Q ss_pred             cccCC---CCcceEEEEecCCCCcEEEEEec----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          168 AGAGG---HRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       168 ~~~~~---~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      .....   -...++.+.|+| +|.+|++...    ..++.|.+-.+                       ...-..+-+|.
T Consensus       210 t~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t-----------------------Wk~~~~LvGH~  265 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT-----------------------WKVDKDLVGHS  265 (942)
T ss_pred             ccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC-----------------------ceeeeeeecCC
Confidence            53222   234678899999 9999988743    23566665544                       23345788999


Q ss_pred             cceEEEEec-------CC------------EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117          241 NYVDCNRWL-------GD------------FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       241 ~~i~~~~~~-------~~------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                      .++.++.|+       .+            .+|+|+.|++|.||.....++        .+-........|..++|+|||
T Consensus       266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP--------l~vi~~lf~~SI~DmsWspdG  337 (942)
T KOG0973|consen  266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP--------LFVIHNLFNKSIVDMSWSPDG  337 (942)
T ss_pred             CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--------hhhhhhhhcCceeeeeEcCCC
Confidence            999999997       12            688999999999999976653        222223345689999999999


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCC
Q 019117          302 HYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                        ..|.++|.||+|.+..++..+
T Consensus       338 --~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  338 --FSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             --CeEEEEecCCeEEEEEcchHH
Confidence              789999999999999998754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-29  Score=197.46  Aligned_cols=255  Identities=16%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             EEEEEEee---cCCCccEEEEEcCCc-EEEEEeccCceeeeE----------------eeeecCCCccceEEEEEEEcCC
Q 019117           37 YAVVFNFI---DSRYFNVFATVGGNR-VTVYQCLEGGVIAAL----------------QSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        37 ~~~~~~p~---~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      .|++|.-.   +...|+++|.|..+. |.|||+.-...+...                +.+....|...|..++|.  ..
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n--~~  254 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN--RN  254 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--cc
Confidence            46666542   334578999999998 999998643322111                122233467777777776  44


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRN  175 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~  175 (346)
                      -++.||+|+.|.+|++||+.++++..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+... .-..++    ..+
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g  330 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDG  330 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE----ecc
Confidence            555999999999999999999999999999999999999999999999999999999999999432 223333    678


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDF  252 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~  252 (346)
                      .|-.++|.|.....++++..||+++-+|+|+.                      +.++.++..|.+.|.+++++   +.+
T Consensus       331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~----------------------~~~vwt~~AHd~~ISgl~~n~~~p~~  388 (463)
T KOG0270|consen  331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP----------------------GKPVWTLKAHDDEISGLSVNIQTPGL  388 (463)
T ss_pred             ceEEEEecCCCceeEEEecCCceEEeeecCCC----------------------CCceeEEEeccCCcceEEecCCCCcc
Confidence            89999999988889999999999999999993                      46899999999999999998   779


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      +++++.|+.|++|++.......       +......-+...|.++.|+-. -+++.|+..+.++|||+.+..++.
T Consensus       389 l~t~s~d~~Vklw~~~~~~~~~-------v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  389 LSTASTDKVVKLWKFDVDSPKS-------VKEHSFKLGRLHCFALDPDVA-FTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eeeccccceEEEEeecCCCCcc-------cccccccccceeecccCCCcc-eEEEecCccceEEEeecccChhHH
Confidence            9999999999999998665321       111111123466777778765 488889999999999999887643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=179.71  Aligned_cols=253  Identities=17%  Similarity=0.221  Sum_probs=205.1

Q ss_pred             cccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCC
Q 019117            4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK   82 (346)
Q Consensus         4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~   82 (346)
                      .+.+....++++...   .+......++|.+.|-.++|+|..   ..+|++++.|. |++||...+++...+..     .
T Consensus        38 gs~dktv~v~n~e~~---r~~~~~~~~gh~~svdql~w~~~~---~d~~atas~dk~ir~wd~r~~k~~~~i~~-----~  106 (313)
T KOG1407|consen   38 GSFDKTVSVWNLERD---RFRKELVYRGHTDSVDQLCWDPKH---PDLFATASGDKTIRIWDIRSGKCTARIET-----K  106 (313)
T ss_pred             cccCCceEEEEecch---hhhhhhcccCCCcchhhheeCCCC---CcceEEecCCceEEEEEeccCcEEEEeec-----c
Confidence            344455556555542   344444568999999999999954   47888888888 99999999998877764     3


Q ss_pred             ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      .+.+. +.|+  |+|+ +++.++.|..|...|.++.+.+...+ ....+..+.|+. .+++|+....-|+|.|.....-+
T Consensus       107 ~eni~-i~ws--p~g~-~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLk  180 (313)
T KOG1407|consen  107 GENIN-ITWS--PDGE-YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLK  180 (313)
T ss_pred             CcceE-EEEc--CCCC-EEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-CCCEEEEecCCceEEEEeccccc
Confidence            33443 4555  9999 99999999999999999887776655 456788899986 66666666667999999999999


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      ++..++   +|.....|+.|+| +++++++|+.|-.+.+||+..                       -.+++.+..+.-+
T Consensus       181 pv~si~---AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E-----------------------LiC~R~isRldwp  233 (313)
T KOG1407|consen  181 PVQSIK---AHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE-----------------------LICERCISRLDWP  233 (313)
T ss_pred             cccccc---cCCcceEEEEECC-CCceEeeccccceeeccChhH-----------------------hhhheeeccccCc
Confidence            999999   8999999999999 999999999999999999998                       4567788889999


Q ss_pred             eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      |+.+.|+  |++||++++|..|-|=+..++.         .+..++ ++++...++|+|..  .+||-+..|
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd---------~~~eI~-~~~~t~tVAWHPk~--~LLAyA~dd  293 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGD---------RVWEIP-CEGPTFTVAWHPKR--PLLAYACDD  293 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCC---------eEEEee-ccCCceeEEecCCC--ceeeEEecC
Confidence            9999998  9999999999999999999987         344443 35688899999988  677776654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=4.1e-29  Score=215.88  Aligned_cols=275  Identities=20%  Similarity=0.315  Sum_probs=211.8

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEc--CCc-EEEEEeccC--------ceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEG--------GVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~--~~~-v~i~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      +...|++++.+|    ++..+|||+  .|+ ++||+...-        ..+..... .-..|.+.|.|+.|+  +||+ +
T Consensus        12 ~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~-~m~~h~~sv~CVR~S--~dG~-~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLC-TMDDHDGSVNCVRFS--PDGS-Y   83 (942)
T ss_pred             CCeeEEEEEecC----CceeEecCCccccccceeeccccccchhhhhhcccchhhe-eeccccCceeEEEEC--CCCC-e
Confidence            356799999999    899999999  666 889986421        10111111 112488899999888  9999 9


Q ss_pred             EEEeecCCeEEEEEccC------------------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117          101 LVAGGINGIIRVIDVSN------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      ||+|+.|+.|.||+...                  .+.+..+.+|...|.+++|+| ++.+|++++.|++|.+||.++.+
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~  162 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFE  162 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccce
Confidence            99999999999999762                  135678889999999999999 99999999999999999999999


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      .+..++   +|.+.|..+.|.| -|++|++-+.|++|++|++.+........                .+ +.-..-...
T Consensus       163 ~~~vl~---~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It----------------~p-f~~~~~~T~  221 (942)
T KOG0973|consen  163 LLKVLR---GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSIT----------------KP-FEESPLTTF  221 (942)
T ss_pred             eeeeee---cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeec----------------cc-hhhCCCcce
Confidence            999999   8999999999999 99999999999999999977622111000                00 000111234


Q ss_pred             eEEEEec--CCEEEEEee----cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec--------C---C---
Q 019117          243 VDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD--------F---H---  302 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~---~---  302 (346)
                      ...+.|+  |++|++...    -.++.|.+-.+.+         .-..+-+|.+++.+++|+|-        |   +   
T Consensus       222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~  292 (942)
T KOG0973|consen  222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC  292 (942)
T ss_pred             eeecccCCCcCeecchhhccCCcceeEEEecCCce---------eeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence            5677887  889988743    4567787776655         56778899999999999982        1   1   


Q ss_pred             -cceEEEEcCCCcEEEEEcCCCCcceeee--eeeeEEEEEecCCCC
Q 019117          303 -YNAAAIGNREGKIFVWELQSSPPVLIAR--LICFSLHVKYNPQSV  345 (346)
Q Consensus       303 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~spdg~  345 (346)
                       +..+|+|+.|++|.||.....+|+....  ....+.+++|||||.
T Consensus       293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF  338 (942)
T ss_pred             ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence             1278999999999999998877766443  234589999999994

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4e-30  Score=210.44  Aligned_cols=251  Identities=18%  Similarity=0.299  Sum_probs=204.7

Q ss_pred             cCCCceE---EEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEe-eeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           31 EGKRPLY---AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ-SYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        31 ~h~~~v~---~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .|...|.   .+..++   ..+++|.+|+.|+ |++|+.........-. .-.-+.|.+-|..+..+  .+++ .|++++
T Consensus        19 qn~~~v~~~~~Lq~da---~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~--~~~~-tlIS~S   92 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDA---PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC--GNGK-TLISAS   92 (735)
T ss_pred             hccccccchhhccccC---CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh--cCCC-ceEEec
Confidence            4555565   444443   3567899999999 9999976543311000 00112366777777777  6677 899999


Q ss_pred             cCCeEEEEEccCc--ceeeeeccCCCceEEEEE-eCCCCceEEEeeCCCCEEEEecCCCe--eEEEecc------cCCCC
Q 019117          106 INGIIRVIDVSNE--KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKDESVRLWNVQTGI--CILIFAG------AGGHR  174 (346)
Q Consensus       106 ~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~------~~~~~  174 (346)
                      .|-+|++|+...+  -+..++..|.+.|.|++. .+ +..++++|+-|+.|.+||++++.  .+..+..      ..++.
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            9999999999877  577888999999999999 55 88899999999999999999772  3322221      11688


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  252 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  252 (346)
                      ..|++++.++ .+..+++|+..+.+++||.++                       ...+..+.+|.+.|.++..+  |..
T Consensus       172 ~siYSLA~N~-t~t~ivsGgtek~lr~wDprt-----------------------~~kimkLrGHTdNVr~ll~~dDGt~  227 (735)
T KOG0308|consen  172 DSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT-----------------------CKKIMKLRGHTDNVRVLLVNDDGTR  227 (735)
T ss_pred             cceeeeecCC-cceEEEecCcccceEEecccc-----------------------ccceeeeeccccceEEEEEcCCCCe
Confidence            8999999998 889999999999999999999                       55677888999999999998  999


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +++++.||+|++||+...+         ++.++..|...|+++..+|+-  ..+.+|+.||.|..=|+.+.
T Consensus       228 ~ls~sSDgtIrlWdLgqQr---------Cl~T~~vH~e~VWaL~~~~sf--~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  228 LLSASSDGTIRLWDLGQQR---------CLATYIVHKEGVWALQSSPSF--THVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EeecCCCceEEeeeccccc---------eeeeEEeccCceEEEeeCCCc--ceEEecCCCCcEEecccCCc
Confidence            9999999999999999877         888999999999999999887  79999999999999999983

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.9e-28  Score=184.57  Aligned_cols=286  Identities=16%  Similarity=0.159  Sum_probs=205.7

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      +..|++|.+.|++++|+.    +|+.||+++.|+ |++|++.+-..  -+.++.-.   .-+..+.+.|+  ||.+.+++
T Consensus        79 ~~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv---e~dhpT~V~Fa--pDc~s~vv  149 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV---EYDHPTRVVFA--PDCKSVVV  149 (420)
T ss_pred             hhhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhhhhHhhccc---cCCCceEEEEC--CCcceEEE
Confidence            345799999999999998    899999999999 99999875221  11111111   11233445555  99886777


Q ss_pred             EeecCCeEEEEEccCcce---e---------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117          103 AGGINGIIRVIDVSNEKL---H---------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~---~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  170 (346)
                      +.-...++++|.+...+.   .         .--+.|.-.+..+-... ++.+|++++.|..|.+|+++ |+.+..+.  
T Consensus       150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~id--  225 (420)
T KOG2096|consen  150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSID--  225 (420)
T ss_pred             EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeec--
Confidence            777778999998754321   1         01123556677777776 88999999999999999998 99998887  


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                       .....-+..+.+| +|+++++++..--|++|.+--.+....               .....++.+.+|...|..++|+ 
T Consensus       226 -tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~f---------------qev~rvf~LkGH~saV~~~aFsn  288 (420)
T KOG2096|consen  226 -TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTF---------------QEVKRVFSLKGHQSAVLAAAFSN  288 (420)
T ss_pred             -cccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcch---------------hhhhhhheeccchhheeeeeeCC
Confidence             4566677889999 999999999999999999865322111               1134577899999999999999 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc----CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                       ...+++.+.||+++|||++-.-....  ....+....    ...+....+.++|++  ..||.. ....++++..++++
T Consensus       289 ~S~r~vtvSkDG~wriwdtdVrY~~~q--Dpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s-~gs~l~~~~se~g~  363 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDTDVRYEAGQ--DPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVS-FGSDLKVFASEDGK  363 (420)
T ss_pred             CcceeEEEecCCcEEEeeccceEecCC--CchHhhcCCcchhhcCCCceEEEeCCCC--cEEEee-cCCceEEEEcccCc
Confidence             67999999999999999874321111  111222221    122334589999999  455544 34579999999987


Q ss_pred             cceee--eeeeeEEEEEecCCCCC
Q 019117          325 PVLIA--RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       325 ~~~~~--~~~~~~~~~~~spdg~~  346 (346)
                      ....+  .+.+.+.+++|+|||+|
T Consensus       364 ~~~~~e~~h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  364 DYPELEDIHSTTISSISYSSDGKY  387 (420)
T ss_pred             cchhHHHhhcCceeeEEecCCCcE
Confidence            55433  35567899999999987

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.8e-30  Score=193.89  Aligned_cols=264  Identities=19%  Similarity=0.252  Sum_probs=218.7

Q ss_pred             cceeeeccccccc---cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCc
Q 019117            8 CEPLVGSLTPSKK---REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE   83 (346)
Q Consensus         8 ~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~   83 (346)
                      +...+|.+...+.   ..|+....|--+.++|.|+.||.    |..+||+|+.|+ |++|.+.+|.+++.+..    .|.
T Consensus       235 GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR----DsEMlAsGsqDGkIKvWri~tG~ClRrFdr----AHt  306 (508)
T KOG0275|consen  235 GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR----DSEMLASGSQDGKIKVWRIETGQCLRRFDR----AHT  306 (508)
T ss_pred             ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc----cHHHhhccCcCCcEEEEEEecchHHHHhhh----hhc
Confidence            3444555554222   23334444555789999999998    789999999999 99999999999888763    488


Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      ..|+++.|+  .|+. .+++++.|.++++.-+.+|++++.+++|+..|+...|.+ ++..+++++.||+|++|+..+.++
T Consensus       307 kGvt~l~FS--rD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC  382 (508)
T KOG0275|consen  307 KGVTCLSFS--RDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTEC  382 (508)
T ss_pred             cCeeEEEEc--cCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhh
Confidence            889888877  8888 899999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee---cc
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV---HS  240 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  240 (346)
                      +.+++.. +...+|+++-.-|.+...++.|...++|.+-++..                        ..+.++..   ..
T Consensus       383 ~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------------------------QvVrsfsSGkREg  437 (508)
T KOG0275|consen  383 LSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------------------------QVVRSFSSGKREG  437 (508)
T ss_pred             hhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------------------------eEEeeeccCCccC
Confidence            9999854 36678999999998889999999999999988876                        12222221   11


Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      +...+...+  |.++.+.+.|+.++.|...+++         ....+..|+..+..++-+|..  +++|+-++||.+++|
T Consensus       438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~---------LE~tl~VhEkdvIGl~HHPHq--NllAsYsEDgllKLW  506 (508)
T KOG0275|consen  438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK---------LERTLPVHEKDVIGLTHHPHQ--NLLASYSEDGLLKLW  506 (508)
T ss_pred             CceEEEEecCCCcEEEEEccCcEEEEEEeecCc---------eeeeeecccccccccccCccc--chhhhhcccchhhhc
Confidence            222333333  8999999999999999999987         677888899999999999988  799999999999999


Q ss_pred             E
Q 019117          319 E  319 (346)
Q Consensus       319 d  319 (346)
                      .
T Consensus       507 k  507 (508)
T KOG0275|consen  507 K  507 (508)
T ss_pred             C
Confidence            5

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.1e-29  Score=209.04  Aligned_cols=250  Identities=17%  Similarity=0.289  Sum_probs=197.0

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ...+|..++    +...++.++..-+.||..........+.......  ..-....+.|. ..+.+ +||+++..|.|.+
T Consensus        41 ~~nAIs~nr----~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~N-lIAT~s~nG~i~v  114 (839)
T KOG0269|consen   41 KANAISVNR----DINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSN-LIATCSTNGVISV  114 (839)
T ss_pred             ccceEeecC----CcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhh-hheeecCCCcEEE
Confidence            455666666    5677888877778888876544333322211110  11223335666 33444 9999999999999


Q ss_pred             EEccC---cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          113 IDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       113 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      ||+..   .+.+..+..|...++++.|++...++|++|+.||+|++||++..+...++.   +....|+.+.|+|..++.
T Consensus       115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~~~~  191 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGYGNK  191 (839)
T ss_pred             EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCCCce
Confidence            99987   567778899999999999999999999999999999999999999888888   688899999999978899


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~  267 (346)
                      ++++...|.+++||+|..                      ..+...+..|.+.|.|+.|+  +.+||+||.|+.|+|||.
T Consensus       192 F~s~~dsG~lqlWDlRqp----------------------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  192 FASIHDSGYLQLWDLRQP----------------------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             EEEecCCceEEEeeccCc----------------------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            999999999999999983                      34667888999999999999  679999999999999999


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcCCCC
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSSP  324 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~~~~  324 (346)
                      .+.+..       .+..+. ...+|.+++|-|+.+ ..|++++  .|-.|+|||+...-
T Consensus       250 t~~~~~-------~~~tIn-Tiapv~rVkWRP~~~-~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  250 TDSRAK-------PKHTIN-TIAPVGRVKWRPARS-YHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             cCCCcc-------ceeEEe-ecceeeeeeeccCcc-chhhhhhccccceEEEEeecccc
Confidence            876532       122221 235899999999987 5788877  47799999998743

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.1e-27  Score=183.39  Aligned_cols=231  Identities=19%  Similarity=0.277  Sum_probs=192.8

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      |...|.+++..  |+.+ ++++|+.|..-.+|++.++.....+.+|.+.|+++.|+. ++.+|++|+-+|.|+||+..++
T Consensus        63 H~~svFavsl~--P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   63 HTDSVFAVSLH--PNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             cCCceEEEEeC--CCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccC
Confidence            78888888877  7666 999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      .....+.   ..-..+.-+.|+| ....|+.|+.||.+-+|.+.+                       +.....+.+|..
T Consensus       139 ~~~~~~~---~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~-----------------------~~~~kv~~Gh~~  191 (399)
T KOG0296|consen  139 GEQWKLD---QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPS-----------------------QALCKVMSGHNS  191 (399)
T ss_pred             ceEEEee---cccCceEEEEecc-cccEEEeecCCCcEEEEECCC-----------------------cceeeEecCCCC
Confidence            9888886   4667888999999 999999999999999999988                       345667888999


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc------------------------------------------
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG------------------------------------------  277 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------  277 (346)
                      .+++=.|.  |+.++++..||+|++||+.++++.....                                          
T Consensus       192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence            99998887  8899999999999999998875410000                                          


Q ss_pred             --------------------------------------------cccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117          278 --------------------------------------------TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  313 (346)
Q Consensus       278 --------------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  313 (346)
                                                                  ....++..-.|...|..+.|-+ .  .+|++++.||
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t--~~l~t~c~~g  348 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T--DYLLTACANG  348 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c--chheeeccCc
Confidence                                                        0001122233667889999998 3  5899999999


Q ss_pred             cEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117          314 KIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       314 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                      .|+.||.++|..+..+. +..++.+++.+||+++
T Consensus       349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL  382 (399)
T ss_pred             eEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence            99999999998665443 3445889999999874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=7.7e-28  Score=188.23  Aligned_cols=263  Identities=17%  Similarity=0.241  Sum_probs=210.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..|.++...|    ....+++|+.|. +.++|...++.+..+.+     |...|..+.+.  ++.. .+++++.|..|+|
T Consensus       220 pgi~ald~~~----s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-----h~kki~~v~~~--~~~~-~v~~aSad~~i~v  287 (506)
T KOG0289|consen  220 PGITALDIIP----SSSKILTGGEDKTAVLFDKPSNQILATLKG-----HTKKITSVKFH--KDLD-TVITASADEIIRV  287 (506)
T ss_pred             CCeeEEeecC----CCCcceecCCCCceEEEecchhhhhhhccC-----cceEEEEEEec--cchh-heeecCCcceEEe
Confidence            4577777777    357899999995 99999888888877765     66667666655  7777 8999999999999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      |.............|..+|+.+..+| .+.+|++++.|++..+.|++++..+...... ...-.+++.+||| ++.+|.+
T Consensus       288 ws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgt  364 (506)
T KOG0289|consen  288 WSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGT  364 (506)
T ss_pred             eccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEec
Confidence            99988777788888999999999999 8999999999999999999999988877621 1234689999999 9999999


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      |..|+.|+|||+.+                       +..+..+.+|+.+|..++|+  |-+|++++.|+.|++||++..
T Consensus       365 gt~d~~vkiwdlks-----------------------~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKS-----------------------QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             cCCCceEEEEEcCC-----------------------ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            99999999999998                       45677888999999999999  779999999999999999987


Q ss_pred             CCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee---eeeeeEEEEEecCCCC
Q 019117          271 EQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA---RLICFSLHVKYNPQSV  345 (346)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~spdg~  345 (346)
                      +         ...++...+ ..+.++.|.+.|  .+|+.++.|=.|++++-.+.+-....   .+.+..+.+.|..+-+
T Consensus       422 ~---------n~kt~~l~~~~~v~s~~fD~SG--t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq  489 (506)
T KOG0289|consen  422 K---------NFKTIQLDEKKEVNSLSFDQSG--TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ  489 (506)
T ss_pred             c---------ccceeeccccccceeEEEcCCC--CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence            6         333333322 368899999999  78999988867777764444332222   2233456666665433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=8.1e-27  Score=185.94  Aligned_cols=268  Identities=14%  Similarity=0.303  Sum_probs=206.5

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+..++.|...+|+|.+   .+++++++.+.+..|++..+...+....|..... .-|.+++|.  ++|.  +++|..+|
T Consensus       196 vk~sne~v~~a~FHPtd---~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~--engd--viTgDS~G  267 (626)
T KOG2106|consen  196 VKTSNEVVFLATFHPTD---PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFL--ENGD--VITGDSGG  267 (626)
T ss_pred             ceeccceEEEEEeccCC---CcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEc--CCCC--EEeecCCc
Confidence            34456778899999965   4899999999999999999888887777765544 666666665  8886  89999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc------------------
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA------------------  170 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------  170 (346)
                      .|.||+..+.+..+....|.+.|.++.... ++ .|++|+.|+.|..||- .-+.++....+                  
T Consensus       268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~v  344 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILV  344 (626)
T ss_pred             eEEEEeCCCceEEeEeeecCCceEEEEEec-Cc-cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEE
Confidence            999999988888877779999999999987 54 5666999999999983 22222211111                  


Q ss_pred             --------------------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccce
Q 019117          171 --------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  230 (346)
Q Consensus       171 --------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
                                          .+|......++.+| +.+++++++.|+.+++|+ ..                        
T Consensus       345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~~------------------------  398 (626)
T KOG2106|consen  345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-DH------------------------  398 (626)
T ss_pred             eeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc-CC------------------------
Confidence                                16778888999999 889999999999999999 22                        


Q ss_pred             eceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          231 FPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       231 ~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                      ++..+. .-.++..|+.|+ ...++.|...|...+.|..+..         .+.... ...+++.++|+|+|  .+||.|
T Consensus       399 k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---------lv~~~~-d~~~ls~v~ysp~G--~~lAvg  465 (626)
T KOG2106|consen  399 KLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD---------LVTIHT-DNEQLSVVRYSPDG--AFLAVG  465 (626)
T ss_pred             ceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccce---------eEEEEe-cCCceEEEEEcCCC--CEEEEe
Confidence            112221 234567788887 3399999999999999998854         333333 37799999999999  799999


Q ss_pred             cCCCcEEEEEcCCCCcceee--ee-eeeEEEEEecCCCCC
Q 019117          310 NREGKIFVWELQSSPPVLIA--RL-ICFSLHVKYNPQSVY  346 (346)
Q Consensus       310 ~~dg~i~iwd~~~~~~~~~~--~~-~~~~~~~~~spdg~~  346 (346)
                      +.|+.|+||.+..+......  +. ..+++++.||+|++|
T Consensus       466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~  505 (626)
T KOG2106|consen  466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF  505 (626)
T ss_pred             cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence            99999999999876533221  22 256899999999986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-29  Score=209.02  Aligned_cols=248  Identities=18%  Similarity=0.305  Sum_probs=198.2

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      .+.+|+|+..   +.+++|+++.+| |.+||+......+.+..|  ..|...+.++.|.  +-..++|++|+.||+|++|
T Consensus        89 S~~DVkW~~~---~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f--~EH~Rs~~~ldfh--~tep~iliSGSQDg~vK~~  161 (839)
T KOG0269|consen   89 SAADVKWGQL---YSNLIATCSTNGVISVWDLNKSIRNKLLTVF--NEHERSANKLDFH--STEPNILISGSQDGTVKCW  161 (839)
T ss_pred             ehhhcccccc---hhhhheeecCCCcEEEEecCccccchhhhHh--hhhccceeeeeec--cCCccEEEecCCCceEEEE
Confidence            3567888852   568999999999 999999873333333333  2388888888887  4444599999999999999


Q ss_pred             EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      |++..+...++.+....|.+|+|+|..++.|+++.+.|.+.+||++.. ++...+.   +|.++|.|+.|+| ++.+|+|
T Consensus       162 DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhP-nr~~lAT  237 (839)
T KOG0269|consen  162 DLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHP-NREWLAT  237 (839)
T ss_pred             eeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh---cccCceEEEeecC-CCceeee
Confidence            999999999999999999999999988899999999999999999854 3445555   8999999999999 9999999


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee--cCeEEEEcC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV--DNEIVLWEP  267 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~--d~~i~iwd~  267 (346)
                      ||.|+.|+|||+...+.                     .++.++ ....+|.++.|.   ..+|++++.  |-.|+|||+
T Consensus       238 GGRDK~vkiWd~t~~~~---------------------~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv  295 (839)
T KOG0269|consen  238 GGRDKMVKIWDMTDSRA---------------------KPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV  295 (839)
T ss_pred             cCCCccEEEEeccCCCc---------------------cceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence            99999999999987321                     222222 234578899998   457888765  889999999


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +..-.        +...+..|...++.++|-.... ..|.+++.||.|..-.+++..
T Consensus       296 rRPYI--------P~~t~~eH~~~vt~i~W~~~d~-~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  296 RRPYI--------PYATFLEHTDSVTGIAWDSGDR-INLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ccccc--------cceeeeccCccccceeccCCCc-eeeEeecCccHHHHhhhhccc
Confidence            86542        6677888999999999987333 689999999998776666543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6.5e-28  Score=189.89  Aligned_cols=255  Identities=16%  Similarity=0.238  Sum_probs=198.5

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ++|...|.+++.+|    ++++||+|+.|. |.||+..+.+.++.+..     |.+.|.+++|-   .|.+.|++++.|+
T Consensus       199 ~~h~keil~~avS~----Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-----hr~~V~~L~fr---~gt~~lys~s~Dr  266 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS----DGKYLATGGRDRHVQIWDCDTLEHVKVFKG-----HRGAVSSLAFR---KGTSELYSASADR  266 (479)
T ss_pred             ccccceeEEEEEcC----CCcEEEecCCCceEEEecCcccchhhcccc-----cccceeeeeee---cCccceeeeecCC
Confidence            48999999999999    899999999999 88999999998888664     88889999885   4444899999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      .|++|+++....+.++.+|.+.|..|.... .+..+.+|+.|+++++|++..... ..+.   ++.+.+-|++|-  +..
T Consensus       267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesq-lifr---g~~~sidcv~~I--n~~  339 (479)
T KOG0299|consen  267 SVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQ-LIFR---GGEGSIDCVAFI--NDE  339 (479)
T ss_pred             ceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccce-eeee---CCCCCeeeEEEe--ccc
Confidence            999999999999999999999999999987 677777788999999999954433 3444   688999999998  567


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  266 (346)
                      .+++|+.+|.|.+|++...+............+           ......++.+|++++..  .+++++|+.+|.|++|.
T Consensus       340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~-----------~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP-----------ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             ceeeccCCceEEEeeecccCceeEeeccccccC-----------CccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            899999999999999988443222211100000           00011223588888887  78999999999999999


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +..+-.     ...++..++ -.+-|++++|+++|+ .+++..+....+--|-..
T Consensus       409 i~~g~r-----~i~~l~~ls-~~GfVNsl~f~~sgk-~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  409 IEDGLR-----AINLLYSLS-LVGFVNSLAFSNSGK-RIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             ecCCcc-----ccceeeecc-cccEEEEEEEccCCC-EEEEecccccccceeeEe
Confidence            988732     223555555 457899999999995 366666666666556443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=8.3e-28  Score=198.32  Aligned_cols=242  Identities=20%  Similarity=0.390  Sum_probs=203.9

Q ss_pred             cceeeeeecccCCCceEE-EEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           21 REYRVTNKLQEGKRPLYA-VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ..+-....+.+|.+-|.+ ++|-+   .++.++++|+.|. |.+|......+...+.+     |...|.+++..  .++ 
T Consensus        45 ~~~l~~~~~~~~~g~i~~~i~y~e---~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-----H~snVC~ls~~--~~~-  113 (745)
T KOG0301|consen   45 KQYLETHAFEGPKGFIANSICYAE---SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-----HKSNVCSLSIG--EDG-  113 (745)
T ss_pred             cccccceecccCcceeeccceecc---ccCcceEeecccceEEEEecCCCCchhhhhc-----cccceeeeecC--CcC-
Confidence            444445567888888877 88876   2556789999998 99999988888888876     67777666654  555 


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                       .+++|+.|.++++|..  +++...+++|+..|++++.-| +. .++||+.|.+|++|.-  ++.+++|.   +|...|+
T Consensus       114 -~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VR  183 (745)
T KOG0301|consen  114 -TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVR  183 (745)
T ss_pred             -ceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhc---cchhhee
Confidence             4899999999999975  566677999999999999998 44 9999999999999975  78889998   8999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      ++++-+ + ..+++++.||.|+.|++..                        ..+..+.+|+..|.++...  ++.++++
T Consensus       184 gL~vl~-~-~~flScsNDg~Ir~w~~~g------------------------e~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  184 GLAVLD-D-SHFLSCSNDGSIRLWDLDG------------------------EVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeEEec-C-CCeEeecCCceEEEEeccC------------------------ceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            999996 4 4589999999999999954                        5678899999999999954  7899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ++|++++||+...           +.+.+..+...|+++++-++|.   +++|+.||.|+||.....
T Consensus       238 gEDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  238 GEDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             cCCceEEEeecCc-----------eEEEEecCccceEEEEEeeCCC---EEEeccCceEEEEEeccc
Confidence            9999999999872           6777777888999999999984   888999999999988743

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.3e-28  Score=181.31  Aligned_cols=259  Identities=16%  Similarity=0.246  Sum_probs=201.9

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC----c---------------------------
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----G---------------------------   69 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~----~---------------------------   69 (346)
                      ..+++.++.||.+.|++++|++    .+.+++++++|+ -.||...-.    +                           
T Consensus       179 sg~CL~~Y~GH~GSVNsikfh~----s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~  254 (481)
T KOG0300|consen  179 SGACLATYTGHTGSVNSIKFHN----SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSE  254 (481)
T ss_pred             cccceeeecccccceeeEEecc----ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccc
Confidence            4678889999999999999999    789999999998 888862100    0                           


Q ss_pred             -----ee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCce
Q 019117           70 -----VI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL  143 (346)
Q Consensus        70 -----~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  143 (346)
                           .+ ..+..  ...|...|.+..|.  ..|+ .+++++.|.+-.+||+++++.+..+.+|....+-++-+| ...+
T Consensus       255 ~sD~~tiRvPl~~--ltgH~~vV~a~dWL--~gg~-Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL  328 (481)
T KOG0300|consen  255 KSDGHTIRVPLMR--LTGHRAVVSACDWL--AGGQ-QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL  328 (481)
T ss_pred             ccCCceeeeeeee--eeccccceEehhhh--cCcc-eeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence                 00 00111  12355666666665  5576 999999999999999999999999999999999999999 8899


Q ss_pred             EEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117          144 VVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  222 (346)
Q Consensus       144 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  222 (346)
                      +++.+.|.+.++||++.. ..+..|+   +|...|+++.|.-  +..+++|+.|.+|++||++++.              
T Consensus       329 VvTsSrDtTFRLWDFReaI~sV~VFQ---GHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMR--------------  389 (481)
T KOG0300|consen  329 VVTSSRDTTFRLWDFREAIQSVAVFQ---GHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMR--------------  389 (481)
T ss_pred             EEEeccCceeEeccchhhcceeeeec---ccccceeEEEEec--CCceeecCCCceEEEeeecccc--------------
Confidence            999999999999999832 3344555   9999999999984  5679999999999999999943              


Q ss_pred             CCCCccceeceEEEeecccceEEEEec-CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          223 KFPTKYVQFPVFIASVHSNYVDCNRWL-GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                              .++.++.. ...+..++.+ |. .++.--.+..|++||++..+....     +...-.+|...|.|++|..+
T Consensus       390 --------splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----PrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  390 --------SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             --------Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----Ccccccccceeeeeeecccc
Confidence                    34444443 4557777777 55 666666778899999998763221     22244578889999999988


Q ss_pred             CCcceEEEEcCCCcEEEEEcCCC
Q 019117          301 FHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ..-.-|.+++.|..+.-|++...
T Consensus       456 hp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  456 HPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CcccccccccccceeeeeEeccc
Confidence            75456889999999999998754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.4e-28  Score=182.62  Aligned_cols=213  Identities=16%  Similarity=0.318  Sum_probs=173.5

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC------------c------ceeeeeccCCCceEEEEEeCCCCce
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------E------KLHKSFVGHGDSINEIRTQPLKPSL  143 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~~  143 (346)
                      |...+.+-+|+  +||. ++++|+.|..|+|.|+..            +      -.++++-.|.++|+++.|+| ....
T Consensus       111 HK~~cR~aafs--~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~I  186 (430)
T KOG0640|consen  111 HKSPCRAAAFS--PDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETI  186 (430)
T ss_pred             cccceeeeeeC--CCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhhe
Confidence            66666655555  9999 999999999999999851            1      24677788999999999999 8999


Q ss_pred             EEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117          144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  223 (346)
Q Consensus       144 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (346)
                      |++|+.|++|+++|+......+.++.. ....+|+++.|+| .|.+++.|..-.++++||+.+.+....           
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs-----------  253 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS-----------  253 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee-----------
Confidence            999999999999999754333333221 2567999999999 999999999999999999998543221           


Q ss_pred             CCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-C-CcCeeEEEEee
Q 019117          224 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-P-ECDIWFIKFSC  299 (346)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~  299 (346)
                               ...-..|.+.|+++.++  +++.++++.||.|++||--+++         ++.++.. | ...|.+..|..
T Consensus       254 ---------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---------Cv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  254 ---------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---------CVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             ---------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---------HHHHHHhhcCCceeeeEEEcc
Confidence                     11334689999999999  8899999999999999998877         5655543 3 35699999999


Q ss_pred             cCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          300 DFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                      ++  +++++.+.|..+++|.+.++..+..+.-
T Consensus       316 n~--kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  316 NG--KYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             CC--eEEeecCCcceeeeeeecCCceEEEEec
Confidence            99  7999999999999999999987766543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=188.56  Aligned_cols=254  Identities=17%  Similarity=0.204  Sum_probs=202.1

Q ss_pred             cEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117           50 NVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH  127 (346)
Q Consensus        50 ~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  127 (346)
                      .+++++...+  +.+|.+.+.....  +.   ....+.+.+++-.  |+|. +|+.|...|.|++|.+.+|+.+..+.+|
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~---~v~Pg~v~al~s~--n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aH  122 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV--QY---IVLPGPVHALASS--NLGY-FLLAGTISGNLYLWELSSGILLNVLSAH  122 (476)
T ss_pred             hheeeecccCccccccccCchhhhh--hh---cccccceeeeecC--CCce-EEEeecccCcEEEEEeccccHHHHHHhh
Confidence            5677776665  9999987655544  11   1245667666655  8898 8888889999999999999999999999


Q ss_pred             CCceEEEEEeCCCCceEEEeeCCCCEEEEecC---------CCeeEEEecccCCCCcceEEEEecCCC--CcEEEEEecC
Q 019117          128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TGICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMD  196 (346)
Q Consensus       128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d  196 (346)
                      -..|+++.|+. ++.+|++|+.||.|.+|.+.         +-+++..+.   .|.-+|+.+...+ +  ..+++|++.|
T Consensus       123 YQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~---~HtlsITDl~ig~-Gg~~~rl~TaS~D  197 (476)
T KOG0646|consen  123 YQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS---DHTLSITDLQIGS-GGTNARLYTASED  197 (476)
T ss_pred             ccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeec---cCcceeEEEEecC-CCccceEEEecCC
Confidence            99999999998 99999999999999999874         345666776   7999999999886 4  4689999999


Q ss_pred             CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCC-
Q 019117          197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS-  273 (346)
Q Consensus       197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-  273 (346)
                      .++++||+..+.                       .+.++ ..+..+.+++.+  +..+.+|+.+|.|.+.++...... 
T Consensus       198 ~t~k~wdlS~g~-----------------------LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~  253 (476)
T KOG0646|consen  198 RTIKLWDLSLGV-----------------------LLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS  253 (476)
T ss_pred             ceEEEEEeccce-----------------------eeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence            999999999832                       22222 346678888888  789999999999999988765411 


Q ss_pred             ------CCCccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecC
Q 019117          274 ------PGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNP  342 (346)
Q Consensus       274 ------~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~sp  342 (346)
                            ...........+.+|.+  .|+|++.+-|+  .+|++|+.||.+.|||+.+.+.+.... ..+.|+-+.++|
T Consensus       254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDG--TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             ccccccccccccceeeeeccccCCcceeEEEEecCc--cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence                  11223445667788887  99999999999  899999999999999999988776655 677777776644

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.9e-26  Score=172.89  Aligned_cols=284  Identities=14%  Similarity=0.231  Sum_probs=204.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+|.+-|.|+.|.+    .|+.+|+|+.|+ |+|||..++.....+...- ..|.+.|..+.|+...-|+ .+|+++.|+
T Consensus        10 s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGq-vvA~cS~Dr   83 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQ-VVATCSYDR   83 (361)
T ss_pred             cCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccc-eEEEEecCC
Confidence            68999999999999    899999999999 9999975544322222111 2388999999999655677 999999999


Q ss_pred             eEEEEEccCc---------ceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEE------Eec----
Q 019117          109 IIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICIL------IFA----  168 (346)
Q Consensus       109 ~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~------~~~----  168 (346)
                      ++.||+-...         ....++......|++|.|.|. -+-.+++++.||.++||+....-.+.      +++    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            9999985211         134456667789999999993 24578999999999999875432222      221    


Q ss_pred             ccCCCCcceEEEEecCC--CCcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          169 GAGGHRNEVLSVDFHPS--DIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~--~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      .+..+..+..|+.|+|.  ...+|+.|+.+     +.+.||.......                   .-..+..+..|++
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-------------------Kw~kva~L~d~~d  224 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-------------------KWLKVAELPDHTD  224 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-------------------eeeeehhcCCCCC
Confidence            12246677889999972  24567777655     4788887766221                   0224556779999


Q ss_pred             ceEEEEec---C---CEEEEEeecCeEEEEcCCCCCC-----------CCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117          242 YVDCNRWL---G---DFILSKSVDNEIVLWEPKMKEQ-----------SPGEGTADILQKYPVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       242 ~i~~~~~~---~---~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  304 (346)
                      +|+.++|.   |   .+|++++.|| |+||.+.....           ....-....+..+..|.+.|+.+.|.-.|  .
T Consensus       225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG--t  301 (361)
T KOG2445|consen  225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG--T  301 (361)
T ss_pred             cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee--e
Confidence            99999998   3   3799999999 99999985321           11112334566788899999999999999  8


Q ss_pred             eEEEEcCCCcEEEEEcCCCC---cceeeeeeeeEEEEEec
Q 019117          305 AAAIGNREGKIFVWELQSSP---PVLIARLICFSLHVKYN  341 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~s  341 (346)
                      .|++.+.||.|++|...-..   ....++..+++....|+
T Consensus       302 iLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~  341 (361)
T KOG2445|consen  302 ILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS  341 (361)
T ss_pred             EEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence            99999999999999764432   33344555555444443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.4e-28  Score=188.96  Aligned_cols=246  Identities=13%  Similarity=0.190  Sum_probs=197.1

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ..+..+|.|..++|++++|.+    ++..+++++.|+ +++|+....+....+.+     |.+.|+++.|.  .... .+
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~----~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-----HtdkVt~ak~~--~~~~-~v  276 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDS----DNKHVIAASNDKNLRLWNVDSLRLRHTLSG-----HTDKVTAAKFK--LSHS-RV  276 (459)
T ss_pred             hhhhhhhhccCCCcceeeecC----CCceEEeecCCCceeeeeccchhhhhhhcc-----cccceeeehhh--cccc-ce
Confidence            667788899999999999998    667777777777 99999999888888875     78888888876  3343 59


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++|+.|.+|++||+....+.+++. ....+.+|..+   ...+++|..|++|++||.++..+.....    -.+.|+++.
T Consensus       277 Vsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~  348 (459)
T KOG0288|consen  277 VSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLD  348 (459)
T ss_pred             eeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEee----cCcceeeEe
Confidence            999999999999999988887765 34556777775   4789999999999999999999999887    456999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD  259 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  259 (346)
                      .++ ++..+++++.|.++.+.|+++........                  -..+. .....+.+.|+  +.|+++|+.|
T Consensus       349 ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~s------------------A~g~k-~asDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  349 LSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFS------------------AEGFK-CASDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             ecc-CCeEEeeecCCCceeeeecccccEEEEee------------------ccccc-cccccceeEECCCCceeeeccCC
Confidence            998 88889999999999999999843211100                  00011 11226777887  7899999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      |.|+||++.+++         +...+.....  .|++++|+|.|  ..|++++.++.+.+|.
T Consensus       409 gsv~iW~v~tgK---------lE~~l~~s~s~~aI~s~~W~~sG--~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  409 GSVYIWSVFTGK---------LEKVLSLSTSNAAITSLSWNPSG--SGLLSADKQKAVTLWT  459 (459)
T ss_pred             CcEEEEEccCce---------EEEEeccCCCCcceEEEEEcCCC--chhhcccCCcceEecC
Confidence            999999999987         4444444333  59999999999  6899999999999993

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=6.5e-28  Score=192.22  Aligned_cols=269  Identities=14%  Similarity=0.223  Sum_probs=214.3

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      -.|.+-|.++.+|.    ..+.+.||+.++|+|||+........+..+.-...+.-+..+.+.  |||+ .|++|+.-.+
T Consensus       416 L~HGEvVcAvtIS~----~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--pdgr-tLivGGeast  488 (705)
T KOG0639|consen  416 LAHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--PDGR-TLIVGGEAST  488 (705)
T ss_pred             hccCcEEEEEEecC----CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec--CCCc-eEEeccccce
Confidence            35888899999986    568999999999999998754332222222111244455555555  9999 8999999999


Q ss_pred             EEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          110 IRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       110 i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      +.|||+......  ..+....-....++.+| +.+..+++..||.|.|||+++...++.|+   +|...+.|+..++ ++
T Consensus       489 lsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqfq---GhtDGascIdis~-dG  563 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISK-DG  563 (705)
T ss_pred             eeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeeccc---CCCCCceeEEecC-CC
Confidence            999999876543  33333345678899999 88999999999999999999999999999   8999999999998 99


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  265 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  265 (346)
                      ..|-||+-|.+|+.||++.......                       . .....|.++.++  +++++.|-..+.+.+-
T Consensus       564 tklWTGGlDntvRcWDlregrqlqq-----------------------h-dF~SQIfSLg~cP~~dWlavGMens~vevl  619 (705)
T KOG0639|consen  564 TKLWTGGLDNTVRCWDLREGRQLQQ-----------------------H-DFSSQIFSLGYCPTGDWLAVGMENSNVEVL  619 (705)
T ss_pred             ceeecCCCccceeehhhhhhhhhhh-----------------------h-hhhhhheecccCCCccceeeecccCcEEEE
Confidence            9999999999999999998432111                       1 123456677666  8899999999988888


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      .....+          ...+..|+..|.++.|++.|  +++++.+.|+.+..|...-|..+...+....|.++..|-|.+
T Consensus       620 h~skp~----------kyqlhlheScVLSlKFa~cG--kwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddk  687 (705)
T KOG0639|consen  620 HTSKPE----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDK  687 (705)
T ss_pred             ecCCcc----------ceeecccccEEEEEEecccC--ceeeecCchhhhhhccCccccceeeccccCcceeeeeccCce
Confidence            776543          34566688999999999999  799999999999999999998877777777889888888876


Q ss_pred             C
Q 019117          346 Y  346 (346)
Q Consensus       346 ~  346 (346)
                      |
T Consensus       688 y  688 (705)
T KOG0639|consen  688 Y  688 (705)
T ss_pred             E
Confidence            5

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=1.7e-27  Score=183.16  Aligned_cols=213  Identities=17%  Similarity=0.295  Sum_probs=173.7

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----------------cceeeeeccCCCceEEEEEeCCCCceEE
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------------EKLHKSFVGHGDSINEIRTQPLKPSLVV  145 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~  145 (346)
                      |.+.+..+....-++.. +.++-+..|.|+||++..                .+++.++.+|...-+.++|+|.....|+
T Consensus       150 h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             cccccceeeecccCCcc-eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            34444444444223444 777788899999999843                2467888899999999999997667799


Q ss_pred             EeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117          146 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  225 (346)
Q Consensus       146 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (346)
                      +|..-+.|++|...++.-..--....+|...|-.++|+|.....|++|+.||+|+|||+|...                 
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-----------------  291 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-----------------  291 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-----------------
Confidence            999889999999988765444444447999999999999888999999999999999999943                 


Q ss_pred             CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117          226 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  303 (346)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  303 (346)
                          ..+......|...|.-|.|+  -.+|++|+.||+++|||++..+      ...++..++.|..+|+++.|+|... 
T Consensus       292 ----~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~-  360 (440)
T KOG0302|consen  292 ----KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHED-  360 (440)
T ss_pred             ----ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccC-
Confidence                22334458899999999999  3389999999999999999877      3358889999999999999999876 


Q ss_pred             ceEEEEcCCCcEEEEEcCCC
Q 019117          304 NAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       304 ~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ..+++++.|..|.+||+.-.
T Consensus       361 s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  361 SVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             ceEEeccCCCcEEEEEeecc
Confidence            68999999999999999654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.5e-29  Score=208.15  Aligned_cols=222  Identities=19%  Similarity=0.324  Sum_probs=195.6

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      |...+.++..-  ..++ .+++|+.|..+-+|.+.....+..+.+|..+|.++.|++ ...+|++|+.+|+|++||+...
T Consensus        27 hsaav~~lk~~--~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   27 HSAAVGCLKIR--KSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhceeeee--ccce-eeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence            44555556553  4566 899999999999999988888888999999999999999 8899999999999999999999


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      +.++++.   +|...+..+.|+| -+.+.++|+.|+.+++||++.                       ..+.+.+.+|..
T Consensus       103 k~vrtLt---gh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk-----------------------~Gc~~~~~s~~~  155 (825)
T KOG0267|consen  103 KIVRTLT---GHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK-----------------------KGCSHTYKSHTR  155 (825)
T ss_pred             hhhhhhh---ccccCcceeeecc-ceEEeccccccccceehhhhc-----------------------cCceeeecCCcc
Confidence            9999888   8999999999999 888899999999999999997                       457788888999


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      .+.++.|.  |.++++++.|.+++|||+..++         .+..|..|++.+.++.|+|..  -++++|+.|+.+++||
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFWD  224 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccc---------cccccccccccccccccCchh--hhhccCCCCceeeeec
Confidence            99999999  7899999999999999999887         788999999999999999988  6899999999999999


Q ss_pred             cCCCCcceeeee-eeeEEEEEecCCCC
Q 019117          320 LQSSPPVLIARL-ICFSLHVKYNPQSV  345 (346)
Q Consensus       320 ~~~~~~~~~~~~-~~~~~~~~~spdg~  345 (346)
                      +++.+.+..... ...+.+.+|+|+|+
T Consensus       225 letfe~I~s~~~~~~~v~~~~fn~~~~  251 (825)
T KOG0267|consen  225 LETFEVISSGKPETDGVRSLAFNPDGK  251 (825)
T ss_pred             cceeEEeeccCCccCCceeeeecCCce
Confidence            998765443222 34588999999985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=5.7e-26  Score=169.58  Aligned_cols=226  Identities=15%  Similarity=0.293  Sum_probs=175.5

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee----------eeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----------AALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      +.|.+.|+++...+.   .|+++++|+.|+ |.+||++.....          ..+.......|.-.|..+.|-+...| 
T Consensus        40 r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-  115 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-  115 (397)
T ss_pred             ccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-
Confidence            679999999999874   589999999999 999999754311          11122223356778888888854444 


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                       .+.+++.|.++++||.++.+....++ -.+.|.+-+++|..  ..++++|.+|-.|++.|+.+|.....+.   +|...
T Consensus       116 -mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls---GHr~~  190 (397)
T KOG4283|consen  116 -MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS---GHRDG  190 (397)
T ss_pred             -eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec---cccCc
Confidence             79999999999999999988877776 56788888888842  3578889999999999999999999999   89999


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      |.++.|+|.....|++|+.||.|++||++....-.    ...+....   +. ...+..-..|.+.+..++|.  +.+++
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf----~~lD~hn~---k~-~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF----RVLDQHNT---KR-PPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeeccccee----EEeecccC---cc-Cccccccccccceeeeeeecccchhhh
Confidence            99999999778889999999999999999832110    00000000   00 11122456788999999998  88999


Q ss_pred             EEeecCeEEEEcCCCCCC
Q 019117          255 SKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~  272 (346)
                      +++.|..+++|+...++.
T Consensus       263 ~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             hccCccceEEeecccCcc
Confidence            999999999999998864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=4.1e-27  Score=181.07  Aligned_cols=263  Identities=19%  Similarity=0.292  Sum_probs=194.1

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-------ce----eeeEeeeecCCCccceEEEEEEEc
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-------GV----IAALQSYVDEDKEESFYTVSWACN   94 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-------~~----~~~~~~~~~~~~~~~v~~~~~~~~   94 (346)
                      .....|.+.++.+.-++..  +..+.|+-+..| |.||++...       +.    ...-..|....|...-+.++|++.
T Consensus       145 ~~~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence            3446788889988888743  446777777777 999997521       00    001112233447777888999865


Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG  171 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  171 (346)
                      ..|.  |++|.--+.|++|...++.-   ...+.+|+..|..++|+|.....|++||.||+|+|||++.+.....+.. .
T Consensus       223 ~~g~--LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  223 KTGR--LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             cccc--cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence            5664  88998889999999988752   2346679999999999998889999999999999999998832222211 1


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      .|.+.|+-+.|+. ...+|++|+.||+++|||+|..+.                    ..++..+..|..+|+++.|+  
T Consensus       300 Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~--------------------~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  300 AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS--------------------GQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC--------------------CCcceeEEeccCCeeEEEeccc
Confidence            6999999999997 666999999999999999999553                    46888999999999999999  


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCC------C----ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPG------E----GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~------~----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                       ...|++++.|..|.+||+........      .    ...+++.... ....+..+.|++.-. .+|++.+.|| +.||
T Consensus       359 e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiP-G~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIP-GLLVSTAIDG-FNVF  435 (440)
T ss_pred             cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCC-CeEEEecccc-eeEE
Confidence             56899999999999999975432100      0    0111111111 234677888998776 4888888888 4444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.1e-27  Score=184.40  Aligned_cols=256  Identities=13%  Similarity=0.187  Sum_probs=201.1

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      .++|.|++-+|    .|.+|+.|.-.+ +++|.+.+|..+..+..     |=..|+++.|+  .||. +|++|+.||.|.
T Consensus        81 Pg~v~al~s~n----~G~~l~ag~i~g~lYlWelssG~LL~v~~a-----HYQ~ITcL~fs--~dgs-~iiTgskDg~V~  148 (476)
T KOG0646|consen   81 PGPVHALASSN----LGYFLLAGTISGNLYLWELSSGILLNVLSA-----HYQSITCLKFS--DDGS-HIITGSKDGAVL  148 (476)
T ss_pred             ccceeeeecCC----CceEEEeecccCcEEEEEeccccHHHHHHh-----hccceeEEEEe--CCCc-EEEecCCCccEE
Confidence            57799999988    788888885555 99999999998887754     77789888887  8898 999999999999


Q ss_pred             EEEcc---------CcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          112 VIDVS---------NEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       112 iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      +|.+.         +-++.+.+..|+-+|+++...+. ....++|+|.|.++++||+..+..+..+.    .+..+.+++
T Consensus       149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----fp~si~av~  224 (476)
T KOG0646|consen  149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----FPSSIKAVA  224 (476)
T ss_pred             EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----cCCcceeEE
Confidence            99873         23577888999999999999872 24589999999999999999999999986    889999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--ceEEEEec--CCEEEEEe
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GDFILSKS  257 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~  257 (346)
                      .+| .+..++.|+.+|.|.+.++........      +.. ..........+..+.+|.+  .|+|++.+  |.+|++|+
T Consensus       225 lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~------~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  225 LDP-AERVVYIGTEEGKIFQNLLFKLSGQSA------GVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             Ecc-cccEEEecCCcceEEeeehhcCCcccc------ccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            999 899999999999999998877332111      000 0111122345667788888  99999998  99999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .||.|.|||+.+.+         +++++....++|+.+.+.|-.+ ..+..-...-.+-.|++..
T Consensus       297 ~dg~VcvWdi~S~Q---------~iRtl~~~kgpVtnL~i~~~~~-~~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  297 EDGKVCVWDIYSKQ---------CIRTLQTSKGPVTNLQINPLER-GIILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             CCCCEEEEecchHH---------HHHHHhhhccccceeEeecccc-ceecccccCccCCchHhhc
Confidence            99999999999877         6777766678899998866543 1233233334455555543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-27  Score=172.10  Aligned_cols=220  Identities=21%  Similarity=0.380  Sum_probs=174.1

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      .+.+++.+|+||.+||+.++|..  |..|.+||+++.|+ |.||....+ .......+  ..|...|++++|+++.-|- 
T Consensus        44 ~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~--~~h~~SVNsV~wapheygl-  117 (299)
T KOG1332|consen   44 GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENG-RWTKAYEH--AAHSASVNSVAWAPHEYGL-  117 (299)
T ss_pred             CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCC-chhhhhhh--hhhcccceeecccccccce-
Confidence            33578899999999999999974  56899999999999 999996665 33333323  4589999999999887787 


Q ss_pred             EEEEeecCCeEEEEEccCc---ceeeeeccCCCceEEEEEeCCC--C-----------ceEEEeeCCCCEEEEecCCCee
Q 019117          100 FLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLK--P-----------SLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~--~-----------~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      .|++++.||.|.|.+.++.   ...+....|.-.|+++.|.|..  +           ..|++|+.|..|+||+..+++-
T Consensus       118 ~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w  197 (299)
T KOG1332|consen  118 LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW  197 (299)
T ss_pred             EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch
Confidence            9999999999999998765   2334556799999999999931  2           5699999999999999987632


Q ss_pred             --EEEecccCCCCcceEEEEecCCC---CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          164 --ILIFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       164 --~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                        ...+.   +|...|+.++|.|..   ...|+++++||++.||..+....                    ......+..
T Consensus       198 ~~e~~l~---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e--------------------~wk~tll~~  254 (299)
T KOG1332|consen  198 KLERTLE---GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE--------------------PWKKTLLEE  254 (299)
T ss_pred             hhhhhhh---hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC--------------------ccccccccc
Confidence              23344   899999999999943   36899999999999998874111                    112223334


Q ss_pred             cccceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117          239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  269 (346)
                      .+..+..+.|+  |+.|++++.|+.|.+|.-+.
T Consensus       255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            56778999998  99999999999999997654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5e-26  Score=193.51  Aligned_cols=267  Identities=14%  Similarity=0.184  Sum_probs=207.3

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      .+|...-+.|+|.|    +|+++.+++.|+ |++|+.... +....+..     ++..+.+++.    .+. +|++|+.+
T Consensus        10 yaht~G~t~i~~d~----~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-----~g~~v~~ia~----~s~-~f~~~s~~   75 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP----DGEFICTCGSDGDIRKWKTNSDEEEPETIDI-----SGELVSSIAC----YSN-HFLTGSEQ   75 (933)
T ss_pred             hhccCceEEEEEcC----CCCEEEEecCCCceEEeecCCcccCCchhhc-----cCceeEEEee----ccc-ceEEeecc
Confidence            46888899999999    789999999999 999997665 33333321     4555655554    344 89999999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      ++|.+|.+.+++.-..+..-+-++.+++|+- ++.+++.||+|-.|++-++.+......++   +|.++|.++.|+| .+
T Consensus        76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lr---gh~apVl~l~~~p-~~  150 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLR---GHDAPVLQLSYDP-KG  150 (933)
T ss_pred             ceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeec---ccCCceeeeeEcC-CC
Confidence            9999999998876655655677899999998 89999999999999999999999999998   8999999999999 99


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEEEeecCeEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSVDNEIVL  264 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~d~~i~i  264 (346)
                      ++|++.+.||.|++||+.++.......    ...            ...... ...+..++|+  +..++..+.|+.|++
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~----~v~------------k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLT----GVD------------KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV  214 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcc----cCC------------ccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence            999999999999999999833211000    000            000111 3445567777  678888999999999


Q ss_pred             EcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117          265 WEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       265 wd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                      |+..+...         ...+..  +...+..+.|+|.|  .|||+++.||.|.|||+++-+   .......|.+++|-|
T Consensus       215 y~r~~we~---------~f~Lr~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~vWnv~t~~---~~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  215 YSRKGWEL---------QFKLRDKLSSSKFSDLQWSPNG--KYIAASTLDGQILVWNVDTHE---RHEFKRAVCCEAWKP  280 (933)
T ss_pred             EccCCcee---------heeecccccccceEEEEEcCCC--cEEeeeccCCcEEEEecccch---hccccceeEEEecCC
Confidence            99998873         333322  34458999999999  799999999999999999832   233444588899998


Q ss_pred             CCC
Q 019117          343 QSV  345 (346)
Q Consensus       343 dg~  345 (346)
                      ++.
T Consensus       281 ~~n  283 (933)
T KOG1274|consen  281 NAN  283 (933)
T ss_pred             CCC
Confidence            864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.4e-27  Score=194.28  Aligned_cols=264  Identities=15%  Similarity=0.220  Sum_probs=207.8

Q ss_pred             ceeeeccccccc-cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCcc
Q 019117            9 EPLVGSLTPSKK-REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEE   84 (346)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~   84 (346)
                      ....|+...... ++-.....++.|.+.|++++..-    +++.|++++.|. |++|+...+.  ++..+..     |.+
T Consensus        48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-----H~D  118 (735)
T KOG0308|consen   48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-----HKD  118 (735)
T ss_pred             eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccCcchhHhhhhc-----ccc
Confidence            344455443222 22334677899999999999987    778999999998 9999988774  5555554     777


Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--ee--------eeec-cCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LH--------KSFV-GHGDSINEIRTQPLKPSLVVSASKDESV  153 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~--------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i  153 (346)
                      -|.|++.. -++.. ++|+|+-|+.|.+||++++.  .+        ..+. ++...|++++.++ .+..|++|+..+.+
T Consensus       119 YVkcla~~-ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~l  195 (735)
T KOG0308|consen  119 YVKCLAYI-AKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDL  195 (735)
T ss_pred             hheeeeec-ccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccce
Confidence            88888883 15555 99999999999999999772  22        2233 7888999999999 88999999999999


Q ss_pred             EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      ++||.++++.+..++   +|...|+.+..++ +|..+++++.||+|++||+..                       +.++
T Consensus       196 r~wDprt~~kimkLr---GHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgq-----------------------QrCl  248 (735)
T KOG0308|consen  196 RLWDPRTCKKIMKLR---GHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQ-----------------------QRCL  248 (735)
T ss_pred             EEeccccccceeeee---ccccceEEEEEcC-CCCeEeecCCCceEEeeeccc-----------------------ccee
Confidence            999999999999999   8999999999997 999999999999999999998                       7788


Q ss_pred             EEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      .++..|.+.|.++..+  =..+.+|+.||.|..=|+++...         ...+-....+|..+..+.+.+  -+-+++.
T Consensus       249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~---------~tlick~daPv~~l~~~~~~~--~~WvtTt  317 (735)
T KOG0308|consen  249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK---------STLICKEDAPVLKLHLHEHDN--SVWVTTT  317 (735)
T ss_pred             eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh---------heEeecCCCchhhhhhccccC--Cceeeec
Confidence            9999999999999988  46899999999999999998542         111122234555555554332  2356667


Q ss_pred             CCcEEEEEcCC
Q 019117          312 EGKIFVWELQS  322 (346)
Q Consensus       312 dg~i~iwd~~~  322 (346)
                      |+.|+-|..+-
T Consensus       318 ds~I~rW~~~~  328 (735)
T KOG0308|consen  318 DSSIKRWKLEP  328 (735)
T ss_pred             cccceecCCcc
Confidence            78888887654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.2e-25  Score=168.00  Aligned_cols=225  Identities=15%  Similarity=0.232  Sum_probs=179.2

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC--CCCEEEEecC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNVQ  159 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~  159 (346)
                      ....+.++.|+  ++|. ++++++.|.++++||..+++.++++..+.-.+..++|.. ....++.++.  |.+|+..++.
T Consensus        13 ~~~~i~sl~fs--~~G~-~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   13 TNGKINSLDFS--DDGL-LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             CCCceeEEEec--CCCC-EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEee
Confidence            35567666665  9999 999999999999999999999999998888899999987 5666666665  8899999999


Q ss_pred             CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117          160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  239 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
                      +.+.++.|.   ||...|.+++.+| .++.+++++.|++|++||++..                       .+...+...
T Consensus        89 dNkylRYF~---GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~-----------------------~cqg~l~~~  141 (311)
T KOG1446|consen   89 DNKYLRYFP---GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVK-----------------------KCQGLLNLS  141 (311)
T ss_pred             cCceEEEcC---CCCceEEEEEecC-CCCeEEecccCCeEEeeEecCC-----------------------CCceEEecC
Confidence            999999999   8999999999999 7799999999999999999972                       222333333


Q ss_pred             ccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc---CCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       240 ~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      ..+|.+..-.|-++|++.....|++||++.....+       ...+.   ......+.+.|||||  ++++.+...+.++
T Consensus       142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP-------F~tf~i~~~~~~ew~~l~FS~dG--K~iLlsT~~s~~~  212 (311)
T KOG1446|consen  142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP-------FTTFSITDNDEAEWTDLEFSPDG--KSILLSTNASFIY  212 (311)
T ss_pred             CCcceeECCCCcEEEEecCCCeEEEEEecccCCCC-------ceeEccCCCCccceeeeEEcCCC--CEEEEEeCCCcEE
Confidence            33343333337788888888899999999875322       22222   335688999999999  6888889999999


Q ss_pred             EEEcCCCCcceeeeeeee----EEEEEecCCCCC
Q 019117          317 VWELQSSPPVLIARLICF----SLHVKYNPQSVY  346 (346)
Q Consensus       317 iwd~~~~~~~~~~~~~~~----~~~~~~spdg~~  346 (346)
                      +.|.-+|.....+.....    .....|+|||+|
T Consensus       213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            999999986665554332    357899999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=5.1e-27  Score=187.18  Aligned_cols=237  Identities=15%  Similarity=0.193  Sum_probs=198.5

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      ..+-|+++.+.|    +|+-|++|+.-. +.|||+......-...     -......|.+++.+||.+ ..+++..||.|
T Consensus       464 rdnyiRSckL~p----dgrtLivGGeastlsiWDLAapTprikae-----ltssapaCyALa~spDak-vcFsccsdGnI  533 (705)
T KOG0639|consen  464 RDNYIRSCKLLP----DGRTLIVGGEASTLSIWDLAAPTPRIKAE-----LTSSAPACYALAISPDAK-VCFSCCSDGNI  533 (705)
T ss_pred             cccceeeeEecC----CCceEEeccccceeeeeeccCCCcchhhh-----cCCcchhhhhhhcCCccc-eeeeeccCCcE
Confidence            456789999999    789999998866 9999998655422211     122334455666679999 99999999999


Q ss_pred             EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      .|||+.+...++.+++|++.+.||.+++ ++..|.+|+-|.+|+.||+++++.+....    ..+.|.++.++| .+.++
T Consensus       534 ~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP-~~dWl  607 (705)
T KOG0639|consen  534 AVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCP-TGDWL  607 (705)
T ss_pred             EEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCC-Cccce
Confidence            9999999999999999999999999999 89999999999999999999998887765    788999999999 99999


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      +.|-.++.+.+.....                        ...+.+..|+..|.++.|.  |+++++.+.|+.+..|...
T Consensus       608 avGMens~vevlh~sk------------------------p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  608 AVGMENSNVEVLHTSK------------------------PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             eeecccCcEEEEecCC------------------------ccceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence            9999999998887766                        2345677899999999998  9999999999999999988


Q ss_pred             CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      .+.         .+...+ ....|.++.+|.|.  +++++|+.|....+|.+
T Consensus       664 yGa---------siFqsk-E~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  664 YGA---------SIFQSK-ESSSVLSCDISFDD--KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccc---------ceeecc-ccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence            765         222222 24589999999999  79999999999888875

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=1.5e-26  Score=189.70  Aligned_cols=145  Identities=18%  Similarity=0.208  Sum_probs=117.6

Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---C
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G  250 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~  250 (346)
                      ...|+.+.|.|.+...|+.++.||.|++|.+......                +....+...+..|...|+++.|+   .
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~eKI~slRfHPLAa  690 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHGEKITSLRFHPLAA  690 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeecccceEEEEEecchhh
Confidence            3568889999988899999999999999999873221                11234566788999999999999   7


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      +.|++++.|-+|++||+.+.+         ....+.+|.+.|..++|||||  +.+|+.+.||+|++|+-.+++. .+++
T Consensus       691 dvLa~asyd~Ti~lWDl~~~~---------~~~~l~gHtdqIf~~AWSpdG--r~~AtVcKDg~~rVy~Prs~e~-pv~E  758 (1012)
T KOG1445|consen  691 DVLAVASYDSTIELWDLANAK---------LYSRLVGHTDQIFGIAWSPDG--RRIATVCKDGTLRVYEPRSREQ-PVYE  758 (1012)
T ss_pred             hHhhhhhccceeeeeehhhhh---------hhheeccCcCceeEEEECCCC--cceeeeecCceEEEeCCCCCCC-cccc
Confidence            899999999999999999887         677889999999999999999  7999999999999999988653 2222


Q ss_pred             eee----eEEEEEecCCCCC
Q 019117          331 LIC----FSLHVKYNPQSVY  346 (346)
Q Consensus       331 ~~~----~~~~~~~spdg~~  346 (346)
                      -++    .--++.|--||+|
T Consensus       759 g~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  759 GKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             CCCCccCcceeEEEEecCcE
Confidence            222    2345777777664

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.9e-28  Score=199.72  Aligned_cols=236  Identities=19%  Similarity=0.305  Sum_probs=202.9

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      +.+..|...|.++..-.    .++.+++|+.+. +-+|.+.+-..+..+.     .|...|.++.|.  ++.. +|++|+
T Consensus        22 ~~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-----~hespIeSl~f~--~~E~-Llaags   89 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLT-----GHESPIESLTFD--TSER-LLAAGS   89 (825)
T ss_pred             hhhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheee-----ccCCcceeeecC--cchh-hhcccc
Confidence            55678899999998744    678999999998 7799987766655544     388889988887  6666 999999


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      .+|+|++||+..++.++++.+|...+.++.|+| -+.++++|+.|+.+++||.+...+...+.   +|...|..+.|+| 
T Consensus        90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP-  164 (825)
T KOG0267|consen   90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSP-  164 (825)
T ss_pred             cCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeec---CCcceeEEEeecC-
Confidence            999999999999999999999999999999999 88999999999999999999888999998   7999999999999 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                      +|.++++++.|.++++||+..                       +..+..+..|+..+.++.|+  .-++++|+.|++++
T Consensus       165 ~Gr~v~~g~ed~tvki~d~~a-----------------------gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  165 DGRWVASGGEDNTVKIWDLTA-----------------------GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             CCceeeccCCcceeeeecccc-----------------------cccccccccccccccccccCchhhhhccCCCCceee
Confidence            999999999999999999987                       44566778899999999988  45788999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  313 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  313 (346)
                      +||+++.+         .+.........|.+.+|+|++  ..+++|..+.
T Consensus       222 f~dletfe---------~I~s~~~~~~~v~~~~fn~~~--~~~~~G~q~s  260 (825)
T KOG0267|consen  222 FWDLETFE---------VISSGKPETDGVRSLAFNPDG--KIVLSGEQIS  260 (825)
T ss_pred             eeccceeE---------EeeccCCccCCceeeeecCCc--eeeecCchhh
Confidence            99999765         455555556789999999999  5677766543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=183.80  Aligned_cols=249  Identities=13%  Similarity=0.238  Sum_probs=180.9

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEee-------eecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQS-------YVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ....|+++.|+|+.   +.+|+..+....+|+|...-......++       ....+|...+++-+|.  |..+..++++
T Consensus       213 E~h~i~sl~ys~Tg---~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~wh--P~~k~~FlT~  287 (641)
T KOG0772|consen  213 ETHQINSLQYSVTG---DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWH--PDNKEEFLTC  287 (641)
T ss_pred             cccccceeeecCCC---CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccc--cCcccceEEe
Confidence            34569999999932   3455555555599999543333332221       2234577788888887  8777789999


Q ss_pred             ecCCeEEEEEccCcc-eeeeec-----cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe--eEEEecccCCCCc-
Q 019117          105 GINGIIRVIDVSNEK-LHKSFV-----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRN-  175 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~-  175 (346)
                      +.||+++|||++..+ .++.++     +-.-+++.++|++ ++.+||+|..||.|.+|+.....  +...++  .+|.. 
T Consensus       288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~~g  364 (641)
T KOG0772|consen  288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHLPG  364 (641)
T ss_pred             cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEee--eccCCC
Confidence            999999999997654 333333     2234789999999 89999999999999999975432  222333  26766 


Q ss_pred             -ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cccceEEEEec--C
Q 019117          176 -EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWL--G  250 (346)
Q Consensus       176 -~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~  250 (346)
                       .|+|+.|++ ++++|++-+.|+++++||+++++..                      +....+  ....-+.++|+  .
T Consensus       365 ~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkp----------------------L~~~tgL~t~~~~tdc~FSPd~  421 (641)
T KOG0772|consen  365 QDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKP----------------------LNVRTGLPTPFPGTDCCFSPDD  421 (641)
T ss_pred             CceeEEEecc-ccchhhhccCCCceeeeeccccccc----------------------hhhhcCCCccCCCCccccCCCc
Confidence             999999998 9999999999999999999995532                      221111  22234556777  5


Q ss_pred             CEEEEEee------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          251 DFILSKSV------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       251 ~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      +++++|..      .|++.+||..+.+         .++++......|..+.|+|--  +.+.+|+.||.+++|--.+
T Consensus       422 kli~TGtS~~~~~~~g~L~f~d~~t~d---------~v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  422 KLILTGTSAPNGMTAGTLFFFDRMTLD---------TVYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             eEEEecccccCCCCCceEEEEecccee---------eEEEecCCCceEEEEeecchh--hheeeecCCCceEEEECcc
Confidence            57777753      5789999998876         677777778889999999987  6788889999999975444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=2.7e-24  Score=176.14  Aligned_cols=268  Identities=16%  Similarity=0.174  Sum_probs=182.7

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +....+.++. .+.+++|+|    ++..+ ++++.++ |++||..+++....+..      ...+..+  .++|+++ .+
T Consensus        22 ~~~~~~~~~~-~~~~l~~~~----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~--~~~~~g~-~l   87 (300)
T TIGR03866        22 EVTRTFPVGQ-RPRGITLSK----DGKLLYVCASDSDTIQVIDLATGEVIGTLPS------GPDPELF--ALHPNGK-IL   87 (300)
T ss_pred             ceEEEEECCC-CCCceEECC----CCCEEEEEECCCCeEEEEECCCCcEEEeccC------CCCccEE--EECCCCC-EE
Confidence            3455555554 367899998    56655 5666665 99999888776554432      1223334  4458888 55


Q ss_pred             -EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC-CEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          102 -VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-SVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       102 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                       ++++.++.|++||+.+.+.+..+.. ...+.+++|+| ++.++++++.++ .+.+||.++++....+.    ....+.+
T Consensus        88 ~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~  161 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL----VDQRPRF  161 (300)
T ss_pred             EEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE----cCCCccE
Confidence             4556689999999998887777653 33468899999 888888887765 46778998887766554    3345678


Q ss_pred             EEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--ceEEEEec--CCEEE
Q 019117          180 VDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GDFIL  254 (346)
Q Consensus       180 ~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~  254 (346)
                      ++|+| ++.++ +++..++.|++||+.+.+........                  ....+..  ....+.|+  +++++
T Consensus       162 ~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~------------------~~~~~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       162 AEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFE------------------IPGVHPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             EEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeec------------------ccccccccCCccceEECCCCCEEE
Confidence            99998 66666 45556899999999874321110000                  0000111  12345566  66644


Q ss_pred             E-EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE-cCCCcEEEEEcCCCCcceeeeee
Q 019117          255 S-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       255 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      + .+.++.+.+||+++++         .+..+. +...+.+++|+|++  .+|+++ +.+|.|.+||+.+++.+..+.+.
T Consensus       223 ~~~~~~~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~~~~g--~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYE---------VLDYLL-VGQRVWQLAFTPDE--KYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EEcCCCCeEEEEECCCCc---------EEEEEE-eCCCcceEEECCCC--CEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            4 4557789999998765         222222 23468899999999  566665 57999999999999988888888


Q ss_pred             eeEEEEEecC
Q 019117          333 CFSLHVKYNP  342 (346)
Q Consensus       333 ~~~~~~~~sp  342 (346)
                      ..++.++++|
T Consensus       291 ~~~~~~~~~~  300 (300)
T TIGR03866       291 RLPWGVVVRP  300 (300)
T ss_pred             cccceeEeCC
Confidence            8889999987

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=8.8e-26  Score=184.84  Aligned_cols=277  Identities=18%  Similarity=0.240  Sum_probs=193.9

Q ss_pred             EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      .+..|++ -++...+||.+.+++ |.++|...-... +..+-.....|...|..+.|.  | |+..|++++.|.++++||
T Consensus        53 f~~sFs~-~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa--p-ge~~lVsasGDsT~r~Wd  128 (720)
T KOG0321|consen   53 FADSFSA-APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA--P-GESLLVSASGDSTIRPWD  128 (720)
T ss_pred             ccccccC-CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC--C-CceeEEEccCCceeeeee
Confidence            3477877 344678999999998 999997643322 111112223588999999998  6 555999999999999999


Q ss_pred             ccCcceeee--eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe--------------------eEEEe----c
Q 019117          115 VSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--------------------CILIF----A  168 (346)
Q Consensus       115 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------~~~~~----~  168 (346)
                      +++.+++..  +.+|.+.|.+++|.|.+...|++|+.||.|.|||++...                    +...+    .
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            999998876  899999999999999999999999999999999997432                    00000    0


Q ss_pred             ccCCCCcc----eEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec---c
Q 019117          169 GAGGHRNE----VLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH---S  240 (346)
Q Consensus       169 ~~~~~~~~----v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  240 (346)
                      ...++...    |+.+.|-  |...|++++. |+.|++||++.........               ......+..|   .
T Consensus       209 k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~e---------------p~~~~~~~t~skrs  271 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQE---------------PRGSDKYPTHSKRS  271 (720)
T ss_pred             ccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccC---------------CCcccCccCcccce
Confidence            00123333    4445553  7888998888 9999999999844322111               1112222223   3


Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC--eeEEEEeecCCcceEEEEcCCCcEE
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      ..+.++..+  |.+|.+.+.|+.|.+|++.+....       ++..+.++...  -..-..+||+  .++++|+.|...+
T Consensus       272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-------P~~~~sg~~~~sf~vks~lSpd~--~~l~SgSsd~~ay  342 (720)
T KOG0321|consen  272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-------PVAEFSGKLNSSFYVKSELSPDD--CSLLSGSSDEQAY  342 (720)
T ss_pred             eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-------chhhccCcccceeeeeeecCCCC--ceEeccCCCccee
Confidence            456667666  888888888999999999887532       33344433211  1122478888  7999999999999


Q ss_pred             EEEcCCCCcc--eeeeeeeeEEEEEecCC
Q 019117          317 VWELQSSPPV--LIARLICFSLHVKYNPQ  343 (346)
Q Consensus       317 iwd~~~~~~~--~~~~~~~~~~~~~~spd  343 (346)
                      +|.+.+-+.-  ...-+.-.+++++|.|.
T Consensus       343 iw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  343 IWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             eeeecCccCChhhhhCcceEEEEEeeccc
Confidence            9999886532  23334455888999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.9e-24  Score=175.82  Aligned_cols=254  Identities=15%  Similarity=0.247  Sum_probs=201.6

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .-...+|.++||+.    ..+.||.+-.++ |.+|++..+-.....-.   ......|..++|+  +.+  .|.+.+.+|
T Consensus        22 d~~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~---g~~drsIE~L~W~--e~~--RLFS~g~sg   90 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVIH---GPEDRSIESLAWA--EGG--RLFSSGLSG   90 (691)
T ss_pred             eeeccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEEe---cCCCCceeeEEEc--cCC--eEEeecCCc
Confidence            44578899999998    556788888888 99999887554333221   2467889999998  555  588999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      .|.-||+.++++...+....+.|++++.+| .+..++.|++||.+..++...++...... .....+.|.+++|+| ++.
T Consensus        91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~-~~~  167 (691)
T KOG2048|consen   91 SITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNP-TGT  167 (691)
T ss_pred             eEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecC-Ccc
Confidence            999999999999999999999999999999 88999999999988888887666544322 113568999999999 888


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec-CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL-GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~l~~~~~d~~i~iwd  266 (346)
                      .+++|+.||.|++||............                .+..+.. .+--|.++.|- ...|++|...|+|.+||
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~----------------~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITM----------------QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWD  231 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeee----------------cccccccCCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence            899999999999999998443221000                0111111 22335556554 78999999999999999


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ...+.         +++.+..|.+.|.+++..+++  .++.+++.|+.|..+...++.
T Consensus       232 ~~~gT---------LiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  232 SIFGT---------LIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             ccCcc---------hhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEEEecCCc
Confidence            99876         889999999999999999998  789999999999999888764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=6.2e-24  Score=173.99  Aligned_cols=247  Identities=12%  Similarity=0.126  Sum_probs=173.1

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEccCcceeeeeccC
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGH  127 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~  127 (346)
                      .++++++.++ +.+||..+++....+..      ...+..++|.  |+++ .+ ++++.++.|++||..+++.+..+..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~------~~~~~~l~~~--~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPV------GQRPRGITLS--KDGK-LLYVCASDSDTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEEC------CCCCCceEEC--CCCC-EEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence            5788888888 99999988877666652      2234445554  8888 55 67778899999999998887777655


Q ss_pred             CCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-eEEEEEcc
Q 019117          128 GDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMK  205 (346)
Q Consensus       128 ~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~  205 (346)
                      .. +..++|+| +++.+ ++++.|+.|++||+++.+.+..+.    +...+.+++|+| ++.+++++..++ .+.+||..
T Consensus        73 ~~-~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        73 PD-PELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIP----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             CC-ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEee----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCC
Confidence            44 56889999 66655 455678999999999888877775    344578899999 888888887765 46778887


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCcccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                      +...                       ..... ......++.|+  ++++++ +..++.|++||+.+++.         +
T Consensus       146 ~~~~-----------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~  192 (300)
T TIGR03866       146 TYEI-----------------------VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------I  192 (300)
T ss_pred             CCeE-----------------------EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------e
Confidence            6221                       11111 12234566776  677754 45699999999998752         2


Q ss_pred             ccccC-----C--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          283 QKYPV-----P--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       283 ~~~~~-----~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ..+..     +  ......++|+|+++ ..+++.+.++.+.+||+.+++..........+.+++|+|+|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~  262 (300)
T TIGR03866       193 KKITFEIPGVHPEAVQPVGIKLTKDGK-TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKY  262 (300)
T ss_pred             eeeeecccccccccCCccceEECCCCC-EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCE
Confidence            21111     1  11234688999994 2344455677899999998876655545556889999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2e-24  Score=162.14  Aligned_cols=241  Identities=14%  Similarity=0.143  Sum_probs=178.9

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      -.|..++.+++|.+     ....++|+-|+ |+.+|+.++.....-.      |.+.+.++...  +... .+++|+.|+
T Consensus        51 ~~~~~plL~c~F~d-----~~~~~~G~~dg~vr~~Dln~~~~~~igt------h~~~i~ci~~~--~~~~-~vIsgsWD~  116 (323)
T KOG1036|consen   51 FKHGAPLLDCAFAD-----ESTIVTGGLDGQVRRYDLNTGNEDQIGT------HDEGIRCIEYS--YEVG-CVISGSWDK  116 (323)
T ss_pred             eecCCceeeeeccC-----CceEEEeccCceEEEEEecCCcceeecc------CCCceEEEEee--ccCC-eEEEcccCc
Confidence            35899999999986     45677777777 9999998877654433      88999999887  4444 799999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +|++||.+.......+. ....|.++...   ++.|+.|..|..+.+||+++.......+ .......++|+++.| ++.
T Consensus       117 ~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~p-n~e  190 (323)
T KOG1036|consen  117 TIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVP-NGE  190 (323)
T ss_pred             cEEEEeccccccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-cccceeEEEEEEEec-CCC
Confidence            99999998766665555 34478888874   5789999999999999999765544222 113567899999999 777


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  266 (346)
                      -++.++-||.|.+=.+...+....+.+.+.-+...........          +|.+++|+  .+.|+||+.||.|.+||
T Consensus       191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y----------PVNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY----------PVNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE----------EeceeEeccccceEEecCCCceEEEcc
Confidence            7888899999888655553333333333333322222222222          46677776  67899999999999999


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      +.+.+         .+..+......|.+++|+.+|  ..||+++.
T Consensus       261 ~~~rK---------rl~q~~~~~~SI~slsfs~dG--~~LAia~s  294 (323)
T KOG1036|consen  261 LFNRK---------RLKQLAKYETSISSLSFSMDG--SLLAIASS  294 (323)
T ss_pred             Ccchh---------hhhhccCCCCceEEEEeccCC--CeEEEEec
Confidence            99887         566666667789999999999  67888763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=3.5e-25  Score=181.36  Aligned_cols=276  Identities=13%  Similarity=0.141  Sum_probs=193.6

Q ss_pred             Ccceeeeccccccccceee----eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC
Q 019117            7 GCEPLVGSLTPSKKREYRV----TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED   81 (346)
Q Consensus         7 g~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~   81 (346)
                      +.++.-..+.+.....+++    +.....|...|.+++|-|    ....|+++++|. +++||+...+....-. +  .+
T Consensus        70 adE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~l~G~~~-~--~G  142 (720)
T KOG0321|consen   70 ADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSRLVGGRL-N--LG  142 (720)
T ss_pred             ecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC----CceeEEEccCCceeeeeeeccceeeccee-e--cc
Confidence            4444445555555555552    233478999999999999    457889998888 9999999887765521 1  24


Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc---------------------------eeeeeccCCCceEE-
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------------------------LHKSFVGHGDSINE-  133 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~-  133 (346)
                      |...|.++||.  +.+...|++|+.||.|.|||++-..                           .+..-+.+...|.+ 
T Consensus       143 H~~SvkS~cf~--~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss  220 (720)
T KOG0321|consen  143 HTGSVKSECFM--PTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS  220 (720)
T ss_pred             cccccchhhhc--cCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence            88888888888  7666699999999999999985321                           01112234444444 


Q ss_pred             --EEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccC-----CC---CcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117          134 --IRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAG-----GH---RNEVLSVDFHPSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       134 --~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~---~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  202 (346)
                        +.+.. +...|++++. |+.|+|||++............     .|   .-.+.++.... .|.+|++...|+.|.+|
T Consensus       221 vTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  221 VTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFY  298 (720)
T ss_pred             eEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEE
Confidence              44445 7788998887 9999999999765443332211     12   33567777775 55556555569999999


Q ss_pred             EccccceeeeeceeecCCCCCCCCccceeceEEEeecccc----eEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY----VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      ++.....                     .++..+.++...    -.++.+++.++++|+.|....+|.+.+.+.      
T Consensus       299 nm~s~s~---------------------sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~------  351 (720)
T KOG0321|consen  299 NMRSLSI---------------------SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA------  351 (720)
T ss_pred             eccccCc---------------------CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC------
Confidence            9998432                     122222222211    123455589999999999999999998763      


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                        ....+.+|.-.|++++|.|..- .-++++++|..+++|++..+
T Consensus       352 --~~~~l~Ght~eVt~V~w~pS~~-t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  352 --PPALLLGHTREVTTVRWLPSAT-TPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             --ChhhhhCcceEEEEEeeccccC-CCceeeccCcceEEEeccCc
Confidence              5667788999999999999765 35677799999999999665

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=4.3e-24  Score=170.56  Aligned_cols=279  Identities=14%  Similarity=0.158  Sum_probs=204.4

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc---------EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---------VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~---------v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      .+.+.+|...|.|++.+|    +.-++|+|...+         +++||..+...+..+..     ....|.+++|+....
T Consensus        97 Qr~y~GH~ddikc~~vHP----dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-----f~~GV~~vaFsk~~~  167 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHP----DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-----FDRGVTCVAFSKING  167 (626)
T ss_pred             cccccCCCCceEEEeecC----CceeeccCcccccCCCcCCCeeeecccccceeeeeecc-----ccccceeeeecccCC
Confidence            345579999999999999    556667554322         89999877776666652     566789999997767


Q ss_pred             CCcEEEEe--ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-
Q 019117           97 GIPFLVAG--GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-  173 (346)
Q Consensus        97 ~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-  173 (346)
                      |. +|+.-  +.+..+.+||...+......+..+..|....|+|.+.+++++.+. +.+.+|+++.+...+.....+.+ 
T Consensus       168 G~-~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~e  245 (626)
T KOG2106|consen  168 GS-LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKRE  245 (626)
T ss_pred             Cc-eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccccc
Confidence            76 66554  345679999999988888888888899999999988888888875 88999999988666554332232 


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCE
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDF  252 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~  252 (346)
                      ...|.|++|.+ ++. +++|..+|.|.||+...                       .........|++.|.++..- ...
T Consensus       246 kk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~-----------------------~~~~k~~~aH~ggv~~L~~lr~Gt  300 (626)
T KOG2106|consen  246 KKFVLCVTFLE-NGD-VITGDSGGNILIWSKGT-----------------------NRISKQVHAHDGGVFSLCMLRDGT  300 (626)
T ss_pred             ceEEEEEEEcC-CCC-EEeecCCceEEEEeCCC-----------------------ceEEeEeeecCCceEEEEEecCcc
Confidence            36899999997 766 88999999999999977                       22333444899999999987 556


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCC-----c--------cc------------------cccccccCCCcCeeEEEEeecC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGE-----G--------TA------------------DILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~-----~--------~~------------------~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                      |++|+.|..|..||-+-.+....+     +        ..                  ..-....+|....+.++.+|+.
T Consensus       301 llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~  380 (626)
T KOG2106|consen  301 LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK  380 (626)
T ss_pred             EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence            777999999999994433221110     0        00                  0011223466788889999988


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117          302 HYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg  344 (346)
                        ..+++++.|+.+++|+  ..++...........++.|.|.|
T Consensus       381 --~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg  419 (626)
T KOG2106|consen  381 --NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG  419 (626)
T ss_pred             --hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc
Confidence              6899999999999999  44445555555555556666654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-26  Score=200.10  Aligned_cols=253  Identities=15%  Similarity=0.244  Sum_probs=205.3

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc---CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ..+-+.++|.+..+....++|.|.+|| |.+||...   +.....+..+  ..|.+.|..+.|.  +...++||+|+.||
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN--~~q~nlLASGa~~g  139 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFN--PFQGNLLASGADDG  139 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeecc--ccCCceeeccCCCC
Confidence            456789999995433334699999999 99999875   3433333333  2488889887776  66656999999999


Q ss_pred             eEEEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC--cceEEEEecC
Q 019117          109 IIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR--NEVLSVDFHP  184 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~  184 (346)
                      .|.|||+++.+.-...  ....+.|.+++|+......|++++.+|.+.|||++..+.+..+..   +.  ..+..++|+|
T Consensus       140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGRMHCSVLAWHP  216 (1049)
T ss_pred             cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCccceeeeeeCC
Confidence            9999999876544333  224678999999987778899999999999999999888888763   33  3578999999


Q ss_pred             CCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee
Q 019117          185 SDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV  258 (346)
Q Consensus       185 ~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~  258 (346)
                      ++...+++++.|.   .|.+||+|..                      ..++..+..|...|.++.|+   .++|++++.
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~a----------------------ssP~k~~~~H~~GilslsWc~~D~~lllSsgk  274 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFA----------------------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGK  274 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeeccccc----------------------CCchhhhcccccceeeeccCCCCchhhhcccC
Confidence            7778888887764   6999999982                      34677889999999999999   479999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      |+.|.+|+.++++         .+..+.....++..+.|+|... .++++.+-||.|.|+.+.+..
T Consensus       275 D~~ii~wN~~tgE---------vl~~~p~~~nW~fdv~w~pr~P-~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  275 DNRIICWNPNTGE---------VLGELPAQGNWCFDVQWCPRNP-SVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCeeEecCCCce---------EeeecCCCCcceeeeeecCCCc-chhhhheeccceeeeeeecCC
Confidence            9999999999987         7888888888999999999875 589999999999999998865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.2e-24  Score=160.45  Aligned_cols=228  Identities=16%  Similarity=0.247  Sum_probs=175.0

Q ss_pred             EEEEcCCc-EEEEEeccCc-------eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117           52 FATVGGNR-VTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS  123 (346)
Q Consensus        52 la~~~~~~-v~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  123 (346)
                      +++|+... |.-+++....       .....+.|..+.|..++++++++    +. ++|+|+.|-+|+|||+.+...+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~-~~aSGssDetI~IYDm~k~~qlg~   78 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GP-YVASGSSDETIHIYDMRKRKQLGI   78 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ce-eEeccCCCCcEEEEeccchhhhcc
Confidence            44555554 4444443221       22333455666799999988875    66 999999999999999999999999


Q ss_pred             eccCCCceEEEEEeCCCCc--eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          124 FVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       124 ~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                      +..|.+.|+++.|.+ ...  .|++|++||.|.+|+...-+++..++   +|.+.|+.++.+| .+++.++.+.|+.++.
T Consensus        79 ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK---~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~  153 (362)
T KOG0294|consen   79 LLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLK---AHKGQVTDLSIHP-SGKLALSVGGDQVLRT  153 (362)
T ss_pred             eeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeec---ccccccceeEecC-CCceEEEEcCCceeee
Confidence            999999999999998 443  89999999999999999999999999   8999999999999 9999999999999999


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  279 (346)
                      ||+..++....                       ... ...-+.+.|+  |.+++.++.+ .|-+|.+.+..        
T Consensus       154 WNLV~Gr~a~v-----------------------~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~--------  200 (362)
T KOG0294|consen  154 WNLVRGRVAFV-----------------------LNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS--------  200 (362)
T ss_pred             ehhhcCcccee-----------------------ecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh--------
Confidence            99998543221                       111 1122337777  8888888776 58999998765        


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                       ....+..+ ..+.++.|-..   ..|++|++|+.|.+||..+..+..
T Consensus       201 -v~~~i~~~-~r~l~~~~l~~---~~L~vG~d~~~i~~~D~ds~~~~~  243 (362)
T KOG0294|consen  201 -VFREIENP-KRILCATFLDG---SELLVGGDNEWISLKDTDSDTPLT  243 (362)
T ss_pred             -Hhhhhhcc-ccceeeeecCC---ceEEEecCCceEEEeccCCCccce
Confidence             33333322 35666666654   489999999999999999866544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.7e-25  Score=171.43  Aligned_cols=195  Identities=16%  Similarity=0.233  Sum_probs=162.4

Q ss_pred             CCcEEEEeecCCeEEEEEccCcce---------------------eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEE
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKL---------------------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL  155 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  155 (346)
                      |+ |+|.|..|..|.|||+.-...                     -..-.+|++.|..+.|+..-.+.|++||.|.+|++
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            44 999999999999999853110                     01123699999999999877889999999999999


Q ss_pred             EecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      ||+.++++...+.   .|.+.|.++.|+|.....|++|+.|++|.+.|.|....                       ...
T Consensus       271 WD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------------------s~~  324 (463)
T KOG0270|consen  271 WDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------------------SGK  324 (463)
T ss_pred             EEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------------------cCc
Confidence            9999999999998   69999999999998899999999999999999996211                       111


Q ss_pred             EeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          236 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       236 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      .-.-.+.|-.+.|+   ...++++..||+|+-+|++...        +++.++..|.+.|.++++++.-. .+|++++.|
T Consensus       325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--------~~vwt~~AHd~~ISgl~~n~~~p-~~l~t~s~d  395 (463)
T KOG0270|consen  325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--------KPVWTLKAHDDEISGLSVNIQTP-GLLSTASTD  395 (463)
T ss_pred             eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------CceeEEEeccCCcceEEecCCCC-cceeecccc
Confidence            11234567778887   6789999999999999999864        38999999999999999999876 589999999


Q ss_pred             CcEEEEEcCCCCcce
Q 019117          313 GKIFVWELQSSPPVL  327 (346)
Q Consensus       313 g~i~iwd~~~~~~~~  327 (346)
                      +.|++|++....+..
T Consensus       396 ~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKS  410 (463)
T ss_pred             ceEEEEeecCCCCcc
Confidence            999999998876543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=8.9e-24  Score=158.29  Aligned_cols=233  Identities=12%  Similarity=0.139  Sum_probs=180.8

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      ....|.++|.+++|+.    +|..+++|+.|+ +++||+.+++....-.      |..+|..+.|...+.-. .|++|+.
T Consensus        67 a~~~~~~PvL~v~Wsd----dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~------Hd~pvkt~~wv~~~~~~-cl~TGSW  135 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSD----DGSKVFSGGCDKQAKLWDLASGQVSQVAA------HDAPVKTCHWVPGMNYQ-CLVTGSW  135 (347)
T ss_pred             hhhccCCCeEEEEEcc----CCceEEeeccCCceEEEEccCCCeeeeee------cccceeEEEEecCCCcc-eeEeccc
Confidence            3467999999999997    788899988888 9999999986544332      88999999998555544 9999999


Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      |.+|+.||++...++.++. -.+.+.++..-   ...++.+..++.|.+|+++.+......... ...-.++|++..+ +
T Consensus       136 DKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~S-pLk~Q~R~va~f~-d  209 (347)
T KOG0647|consen  136 DKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIES-PLKWQTRCVACFQ-D  209 (347)
T ss_pred             ccceeecccCCCCeeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcC-cccceeeEEEEEe-c
Confidence            9999999999998888877 45677777764   368888888999999999866443322110 2345789999997 7


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc---------cceEEEEec--CCEEEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---------NYVDCNRWL--GDFILS  255 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~--~~~l~~  255 (346)
                      ....+.|+-+|.+.+..+.....                     ..-+.+..|.         -.|.+|+|+  -..|++
T Consensus       210 ~~~~alGsiEGrv~iq~id~~~~---------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  210 KDGFALGSIEGRVAIQYIDDPNP---------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             CCceEeeeecceEEEEecCCCCc---------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence            77779999999999998887321                     1223344443         246778888  668999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                      ++.||+..+||-+...         .+.....+..+|++.+|+.+|  .++|.+
T Consensus       269 aGsDGtf~FWDkdar~---------kLk~s~~~~qpItcc~fn~~G--~ifaYA  311 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDART---------KLKTSETHPQPITCCSFNRNG--SIFAYA  311 (347)
T ss_pred             ecCCceEEEecchhhh---------hhhccCcCCCccceeEecCCC--CEEEEE
Confidence            9999999999988765         677778889999999999999  455443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.3e-24  Score=160.55  Aligned_cols=268  Identities=16%  Similarity=0.142  Sum_probs=191.5

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      -.|+.|++    .|.+||+|..+| |.|||+.+-..-+.+..     |..+|.+++|+  ++|+ .|++++.|..|.+||
T Consensus        26 a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS--~dgr-~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFSR----WGDYLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWS--RDGR-KLLTSSRDWSIKLWD   93 (405)
T ss_pred             cceEEecc----CcceeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEec--CCCC-EeeeecCCceeEEEe
Confidence            67999999    899999999999 99999998886666654     78889999998  9999 999999999999999


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC-CCcceEEEEecCCCCcEEEEE
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG-HRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~  193 (346)
                      +..|.+++.+. ...+|+.+.|+|.+.+.+++.-.+..-.+-++..++....-....+ ......+..|++ .++++++|
T Consensus        94 l~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitG  171 (405)
T KOG1273|consen   94 LLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITG  171 (405)
T ss_pred             ccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEe
Confidence            99999988887 6789999999997666666665555566666655332221111111 112223446787 89999999


Q ss_pred             ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117          194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ...|.+.++|..+.                       ..+..+.-.. ..|..+.++  |+.|+.-+.|..||.|++..-
T Consensus       172 tsKGkllv~~a~t~-----------------------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  172 TSKGKLLVYDAETL-----------------------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             cCcceEEEEecchh-----------------------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence            99999999999983                       2333333333 567777777  999999999999999998743


Q ss_pred             CCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCCCCcceeeeeee--eEEEEEecC
Q 019117          271 EQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARLIC--FSLHVKYNP  342 (346)
Q Consensus       271 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~sp  342 (346)
                      ...-.....++.+++..  ....-.+++||.+|  .|+++++ ....++||.-..|.++.+..-..  ....+.|.|
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg--eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG--EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCc--cEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence            21111111122222221  23355678999999  5666555 56689999999998776654322  134455555

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.7e-26  Score=173.99  Aligned_cols=224  Identities=14%  Similarity=0.250  Sum_probs=176.8

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                      +|.+.|.+++=.  |..-..+++|+.||.|+|||+.+.++..+++.|.+.|..|++..   ..++++++|.+|+.|-+.-
T Consensus        64 gHrdGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   64 GHRDGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             ccccccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccC
Confidence            477888777655  65533799999999999999999999999999999999999975   6788889999988887431


Q ss_pred             ---------------------------C-----------eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117          161 ---------------------------G-----------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       161 ---------------------------~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  202 (346)
                                                 |           .++..+.   --...|.++.|+|-....|++|+.|+.|.+|
T Consensus       139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~sms---wG~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMS---WGADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             CcceeeeccccccccccccccccccccCceeeecccccCCccceee---cCCCceeEEecCCCcchheeeeccCCceEEE
Confidence                                       1           1122222   1234577888999777889999999999999


Q ss_pred             EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccc
Q 019117          203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD  280 (346)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  280 (346)
                      |++..                       .|+..... ...-..|+|+  +-.++++++|..++.||++..+.        
T Consensus       216 D~R~~-----------------------~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--------  263 (433)
T KOG0268|consen  216 DLRQA-----------------------SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--------  263 (433)
T ss_pred             ecccC-----------------------Cccceeee-eccccceecCccccceeeccccccceehhhhhhcc--------
Confidence            99983                       23332221 1223467888  55789999999999999998763        


Q ss_pred             ccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee--eeEEEEEecCCCCC
Q 019117          281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI--CFSLHVKYNPQSVY  346 (346)
Q Consensus       281 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~spdg~~  346 (346)
                      ++..+.+|...|.+++|||.|  .-+++||.|.+|+||.+..+....++...  .++.++.||-|.+|
T Consensus       264 p~~v~~dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  264 PLNVHKDHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY  329 (433)
T ss_pred             cchhhcccceeEEEeccCCCc--chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence            788899999999999999999  57999999999999999998765555433  36899999999886

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=170.62  Aligned_cols=287  Identities=15%  Similarity=0.178  Sum_probs=204.4

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      .+......+-+.++|++++|+|..  ..+++|+|...| |-+||+.+.+.. ..+.  ....|..+|.++.|+  |.+..
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~--~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~--~f~~hs~~Vs~l~F~--P~n~s  248 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTE--NRKLVAVGDKGGQVGLWNFGTQEKDKDGVY--LFTPHSGPVSGLKFS--PANTS  248 (498)
T ss_pred             cceecceeEecccceEEEEecccC--cceEEEEccCCCcEEEEecCCCCCccCceE--EeccCCccccceEec--CCChh
Confidence            344555667789999999999954  347889998888 999999532221 1122  223478889989888  65555


Q ss_pred             EEEEeecCCeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCCcc
Q 019117          100 FLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNE  176 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  176 (346)
                      .+++.+.||+|++-|+++...  +.........+.++.|+. +...++.+..=|...+||++++.. ...+.   -|...
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~---lh~kK  324 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLR---LHKKK  324 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhh---hhhcc
Confidence            799999999999999987753  333333556778889988 666677777767999999998765 44444   58889


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      |++++++|....+++|++.|++.+|||++.....                   ..|......|...|.+..|+  +..|+
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K-------------------~sp~lst~~HrrsV~sAyFSPs~gtl~  385 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK-------------------ASPFLSTLPHRRSVNSAYFSPSGGTLL  385 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCC-------------------CCcceecccccceeeeeEEcCCCCceE
Confidence            9999999988899999999999999999984321                   11355667799999999999  45599


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccccccccccC-----CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      +.+.|..|+|||..--..     ...++..+..     .--......|.|+.  .++++|-.-..|-|+|-..++.+..+
T Consensus       386 TT~~D~~IRv~dss~~sa-----~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~--~li~vg~~~r~IDv~~~~~~q~v~el  458 (498)
T KOG4328|consen  386 TTCQDNEIRVFDSSCISA-----KDEPLGTIPHNNRTGRWLTPFKAAWDPDY--NLIVVGRYPRPIDVFDGNGGQMVCEL  458 (498)
T ss_pred             eeccCCceEEeecccccc-----cCCccceeeccCcccccccchhheeCCCc--cEEEEeccCcceeEEcCCCCEEeeec
Confidence            999999999999841100     0001111111     11123446799977  79999999999999998888644433


Q ss_pred             eeee--eE-EEEEecCCC
Q 019117          330 RLIC--FS-LHVKYNPQS  344 (346)
Q Consensus       330 ~~~~--~~-~~~~~spdg  344 (346)
                      ..+.  .+ .-..|+|-+
T Consensus       459 ~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  459 HDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             cCccccccccceeecccc
Confidence            2221  12 225677643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.6e-24  Score=167.29  Aligned_cols=286  Identities=15%  Similarity=0.180  Sum_probs=209.1

Q ss_pred             cccccceeeeeec-ccC--CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEE
Q 019117           17 PSKKREYRVTNKL-QEG--KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA   92 (346)
Q Consensus        17 ~~~~~~~~~~~~~-~~h--~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   92 (346)
                      |...-.++.++.. .+|  .+.|++|.|+|    ...+|.+++.|+ ++||.+. |+.-..++....  ..-++.+.+|+
T Consensus       194 p~~tl~~krlkDaNa~~ps~~~I~sv~FHp----~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l--~~fPi~~a~f~  266 (514)
T KOG2055|consen  194 PPGTLNIKRLKDANAAHPSHGGITSVQFHP----TAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHL--EKFPIQKAEFA  266 (514)
T ss_pred             CCceeeeEeecccccCCcCcCCceEEEecC----CCceEEEecCCCcEEEEEec-CccChhheeeee--ccCccceeeec
Confidence            3344445544444 233  47899999999    678999999998 9999865 333223332211  34556666666


Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceee--eeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  169 (346)
                        |+|...+++++....++.||+.+.+..+  ...++. ..+.....++ ++++|+..+..|.|.+....+++.+..++ 
T Consensus       267 --p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-  342 (514)
T KOG2055|consen  267 --PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-  342 (514)
T ss_pred             --CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-
Confidence              8898789999999999999998877443  333333 4677888899 88899999999999999999999999997 


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce--EEEE
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV--DCNR  247 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~  247 (346)
                         -.+.|..++|+. ++..|+.++.+|.|.+||++..                       ..+..+. ..+.|  ++++
T Consensus       343 ---ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~-----------------------~~~~rf~-D~G~v~gts~~  394 (514)
T KOG2055|consen  343 ---IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQN-----------------------SCLHRFV-DDGSVHGTSLC  394 (514)
T ss_pred             ---eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCc-----------------------ceEEEEe-ecCccceeeee
Confidence               789999999996 8888888889999999999983                       2222222 22223  3334


Q ss_pred             --ecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcCCC
Q 019117          248 --WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSS  323 (346)
Q Consensus       248 --~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~~~  323 (346)
                        .++.+||+|+..|.|.|||.++....   ..+.++..+..-...|+++.|++|.  .+||.+|  .+..+++-.+.+.
T Consensus       395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s---~~PkPik~~dNLtt~Itsl~Fn~d~--qiLAiaS~~~knalrLVHvPS~  469 (514)
T KOG2055|consen  395 ISLNGSYLATGSDSGIVNIYDGNSCFAS---TNPKPIKTVDNLTTAITSLQFNHDA--QILAIASRVKKNALRLVHVPSC  469 (514)
T ss_pred             ecCCCceEEeccCcceEEEeccchhhcc---CCCCchhhhhhhheeeeeeeeCcch--hhhhhhhhccccceEEEeccce
Confidence              33899999999999999997764321   1233566666667789999999999  5676666  5778999998886


Q ss_pred             Ccceee----eeeeeEEEEEecCCCCC
Q 019117          324 PPVLIA----RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       324 ~~~~~~----~~~~~~~~~~~spdg~~  346 (346)
                      ....-+    .--++++|++|||.|.|
T Consensus       470 TVFsNfP~~n~~vg~vtc~aFSP~sG~  496 (514)
T KOG2055|consen  470 TVFSNFPTSNTKVGHVTCMAFSPNSGY  496 (514)
T ss_pred             eeeccCCCCCCcccceEEEEecCCCce
Confidence            533322    22356899999998865

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2e-24  Score=161.44  Aligned_cols=260  Identities=17%  Similarity=0.308  Sum_probs=192.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+|+-.|..+.|-|.|   ..+|.+++-|. +++||..+.+....+.      -++.|+..++++-.-...++|+|..+-
T Consensus        98 ~~Hky~iss~~WyP~D---tGmFtssSFDhtlKVWDtnTlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~  168 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPID---TGMFTSSSFDHTLKVWDTNTLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDV  168 (397)
T ss_pred             ccceeeeeeeEEeeec---CceeecccccceEEEeecccceeeEEee------cCceeehhhcChhhhcceEEEEecCCC
Confidence            5688899999999954   46888888888 9999988877666555      567788888874433333888899999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEe-----------cccCCCCcc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIF-----------AGAGGHRNE  176 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~-----------~~~~~~~~~  176 (346)
                      .|++.|+.+|....++.+|.+.|.++.|+|...-.|++|+.||.|++||++.. .+...+           +....|.+.
T Consensus       169 ~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk  248 (397)
T KOG4283|consen  169 QVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK  248 (397)
T ss_pred             cEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence            99999999999999999999999999999977778999999999999999843 222222           222368899


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK  256 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  256 (346)
                      |.+++|.. ++.++++++.|..+++|+..++...+.......           ......+..|   +.+.  +...++--
T Consensus       249 vngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-----------~n~~~~~~~~---~~~~--~s~vfv~~  311 (397)
T KOG4283|consen  249 VNGLAWTS-DARYLASCGTDDRIRVWNMESGRNTLREFGPII-----------HNQTTSFAVH---IQSM--DSDVFVLF  311 (397)
T ss_pred             eeeeeecc-cchhhhhccCccceEEeecccCccccccccccc-----------ccccccceEE---Eeec--ccceEEEE
Confidence            99999997 999999999999999999998654322111000           0000011111   1111  12333333


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      -.++.+.++++-.+.         .+..+..|-..|.+..+-|+-  ....+|..|+.|..|-..-..+.
T Consensus       312 p~~~~lall~~~sgs---------~ir~l~~h~k~i~c~~~~~~f--q~~~tg~~d~ni~~w~p~l~~pt  370 (397)
T KOG4283|consen  312 PNDGSLALLNLLEGS---------FVRRLSTHLKRINCAAYRPDF--EQCFTGDMNGNIYMWSPALKSPT  370 (397)
T ss_pred             ecCCeEEEEEccCce---------EEEeeecccceeeEEeecCch--hhhhccccCCccccccccccCCc
Confidence            445778888877765         567777777788999999988  57889999999999987544443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.5e-23  Score=173.46  Aligned_cols=325  Identities=16%  Similarity=0.184  Sum_probs=228.3

Q ss_pred             ccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee-----------
Q 019117            5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-----------   72 (346)
Q Consensus         5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~-----------   72 (346)
                      |.|......-+......+|+....+.||.+.|.+++|..... +.-+||+++.|. |+||.+..+....           
T Consensus       163 a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~  241 (764)
T KOG1063|consen  163 ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTL  241 (764)
T ss_pred             EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccc
Confidence            445555555555555678999999999999999999998442 457899999999 9999986443111           


Q ss_pred             ----------eEee-----eecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-------eeeeccCCCc
Q 019117           73 ----------ALQS-----YVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDS  130 (346)
Q Consensus        73 ----------~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~  130 (346)
                                .++-     -...+|.+=|+++.|.  |++. .|++++.|.++.+|...+..-       +..+.+....
T Consensus       242 ~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~--p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G  318 (764)
T KOG1063|consen  242 SNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH--PEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG  318 (764)
T ss_pred             cCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc--cchh-hheecccCcceEEEecCCccceEEEEEEeecccccccc
Confidence                      1110     0012578889889888  8887 899999999999998766521       1222334556


Q ss_pred             eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc----
Q 019117          131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE----  206 (346)
Q Consensus       131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----  206 (346)
                      .....|+| +++.+++-+..|..++|...+...-.......+|...|+.++|+| .+.+|++.+.|.+-|+|-.-.    
T Consensus       319 F~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~  396 (764)
T KOG1063|consen  319 FWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQE  396 (764)
T ss_pred             eeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccc
Confidence            88999999 889999999999999998443333223333348999999999999 899999999998888764330    


Q ss_pred             ------ccee---------eeeceeecC--------------------------------------------C--CCCCC
Q 019117          207 ------FWTY---------VEKSFTWTD--------------------------------------------L--PSKFP  225 (346)
Q Consensus       207 ------~~~~---------~~~~~~~~~--------------------------------------------~--~~~~~  225 (346)
                            ++.+         +.....+..                                            +  ...++
T Consensus       397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence                  0000         000000000                                            0  00000


Q ss_pred             --C---cc----c-------------------------eeceEEEeecccceEEEEec--CCEEEEEeec-----CeEEE
Q 019117          226 --T---KY----V-------------------------QFPVFIASVHSNYVDCNRWL--GDFILSKSVD-----NEIVL  264 (346)
Q Consensus       226 --~---~~----~-------------------------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-----~~i~i  264 (346)
                        .   ..    .                         -..+.++.+|...|.+++.+  ++++++++..     ..|++
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l  556 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL  556 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence              0   00    0                         00134566788899999999  8999999764     45999


Q ss_pred             EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-----eeeeeeeEEEEE
Q 019117          265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-----IARLICFSLHVK  339 (346)
Q Consensus       265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~  339 (346)
                      |+..+..         ..+.+.+|.-.|+.++||||+  ++|++.+.|..+.+|.........     ...+..-++++.
T Consensus       557 w~t~~W~---------~~~~L~~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs  625 (764)
T KOG1063|consen  557 WNTANWL---------QVQELEGHSLTVTRLAFSPDG--RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS  625 (764)
T ss_pred             Eeccchh---------hhheecccceEEEEEEECCCC--cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence            9998876         567889999999999999999  799999999999999986643211     222334478999


Q ss_pred             ecCCCCC
Q 019117          340 YNPQSVY  346 (346)
Q Consensus       340 ~spdg~~  346 (346)
                      |+||+.|
T Consensus       626 W~pde~~  632 (764)
T KOG1063|consen  626 WSPDEKY  632 (764)
T ss_pred             cCcccce
Confidence            9999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.9e-24  Score=175.93  Aligned_cols=256  Identities=12%  Similarity=0.089  Sum_probs=185.3

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      +-.+...++||++.|.+|...|    .|.+||+|+.|| |+||.+.++.++..++      ..+.|.+++|++.++-. .
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp----~G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~~~-v  457 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDP----SGEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSDLC-V  457 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecC----CcceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCCce-e
Confidence            3345556699999999999998    799999999999 9999999999999887      56789999999655554 5


Q ss_pred             EEEeecCCeEEEEEccCc-------------------------------------ceeeeeccCCCceEEEEEeCCCCce
Q 019117          101 LVAGGINGIIRVIDVSNE-------------------------------------KLHKSFVGHGDSINEIRTQPLKPSL  143 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~  143 (346)
                      ||++-... +.|.+..-|                                     .-++..-.|...|..+.|+. .+.+
T Consensus       458 LAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDY  535 (733)
T KOG0650|consen  458 LAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDY  535 (733)
T ss_pred             EEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCce
Confidence            55554333 444432111                                     00112223556666666666 5666


Q ss_pred             EEEeeCC---CCEEEE-----------------------------------------ecCCCeeEEEecccCCCCcceEE
Q 019117          144 VVSASKD---ESVRLW-----------------------------------------NVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       144 l~s~~~d---~~i~iw-----------------------------------------d~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      |++..-+   ..|.|.                                         |+...+.++.+.   .....|..
T Consensus       536 latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~---tg~kwiS~  612 (733)
T KOG0650|consen  536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL---TGSKWISS  612 (733)
T ss_pred             EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh---cCCeeeee
Confidence            6654332   234444                                         444433333333   34567888


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC--CEEEEEe
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG--DFILSKS  257 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~  257 (346)
                      ++.+| +|..|+.++.|+.+..||+.-.                      ..+...+..|...+++++|++  .++++|+
T Consensus       613 msihp-~GDnli~gs~d~k~~WfDldls----------------------skPyk~lr~H~~avr~Va~H~ryPLfas~s  669 (733)
T KOG0650|consen  613 MSIHP-NGDNLILGSYDKKMCWFDLDLS----------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGS  669 (733)
T ss_pred             eeecC-CCCeEEEecCCCeeEEEEcccC----------------------cchhHHhhhhhhhhhhhhhccccceeeeec
Confidence            99998 8888999999999999999872                      346778889999999999995  4799999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcC----eeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD----IWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      .||++.||.-.-..........-++..+.+|...    |..+.|+|..  .+|.+++.||.|++|
T Consensus       670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q--pWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ--PWLFSAGADGTIRLF  732 (733)
T ss_pred             CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC--ceEEecCCCceEEee
Confidence            9999999975544332222334467777887655    8889999988  799999999999998

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=2.6e-24  Score=160.31  Aligned_cols=262  Identities=18%  Similarity=0.220  Sum_probs=198.8

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCC--------cEEEEEeccCcee------eeEeeeecCCCccceEEEEEE
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGVI------AALQSYVDEDKEESFYTVSWA   92 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~--------~v~i~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~   92 (346)
                      +.|..|.+.|+.++-+|.   +..+|+++..+        +..||.+.+....      ..+..+. ..+-+.+.|+.|.
T Consensus        57 kvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld-teavg~i~cvew~  132 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD-TEAVGKINCVEWE  132 (370)
T ss_pred             hhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC-HHHhCceeeEEEc
Confidence            445678899999999994   45788887653        2789987643322      1222221 1234588889888


Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcce-eeeec-----cCCCceEEEEEeC-CCCceEEEeeCCCCEEEEecCCCeeEE
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFV-----GHGDSINEIRTQP-LKPSLVVSASKDESVRLWNVQTGICIL  165 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~  165 (346)
                        |++. .+++-. |..|.+|++..+.. +..+.     ++....++-+|+| .+++.+++.+ |+++..||+++.++..
T Consensus       133 --Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~  207 (370)
T KOG1007|consen  133 --PNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNN  207 (370)
T ss_pred             --CCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhc
Confidence              7777 666665 88999999987765 33332     2556788899999 4566666654 7999999999988887


Q ss_pred             EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE
Q 019117          166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  245 (346)
Q Consensus       166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (346)
                      .+..  +|...|+.+.|+|+...+|++|+.||.|++||.|..                      ..++..+..|...|.+
T Consensus       208 sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t----------------------k~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  208 SIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT----------------------KFPVQELPGHSHWVWA  263 (370)
T ss_pred             chhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC----------------------CccccccCCCceEEEE
Confidence            7765  789999999999977788999999999999999983                      4688899999999999


Q ss_pred             EEec---CCEEEEEeecCeEEEEcCCCCCCC--------------------CCCccccccccccCCCcCeeEEEEeecCC
Q 019117          246 NRWL---GDFILSKSVDNEIVLWEPKMKEQS--------------------PGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       246 ~~~~---~~~l~~~~~d~~i~iwd~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                      +.|+   .+++++++.|..|.+|...+-...                    ........+.++..|+..|.+++||.-..
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            9998   779999999999999976543210                    00012234567888999999999998764


Q ss_pred             cceEEEEcCCCcEEEEEcCC
Q 019117          303 YNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd~~~  322 (346)
                       =++|+-+.||.+.|=.+..
T Consensus       344 -WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  344 -WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             -eeEEEeccCceEEeecCCh
Confidence             3788999999998877654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=159.42  Aligned_cols=270  Identities=16%  Similarity=0.239  Sum_probs=198.7

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--------eeeeEeeeecCCCccceEEEEEEE-----cCCCCcEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--------VIAALQSYVDEDKEESFYTVSWAC-----NVDGIPFL  101 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~l  101 (346)
                      ...+.|+|    ||..+++-+.|. +.+|++-...        .......-.....++.|+..+|-.     .|+.. ++
T Consensus        52 ~kgckWSP----DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~  126 (406)
T KOG2919|consen   52 LKGCKWSP----DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LF  126 (406)
T ss_pred             hccceeCC----CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-ee
Confidence            44678999    788888888777 9999874211        101111111112567788888752     25555 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeecc--CCC---ceEEEEEeCCCCceEEEeeCCCCEEEEec-CCCeeEEEecc----cC
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVG--HGD---SINEIRTQPLKPSLVVSASKDESVRLWNV-QTGICILIFAG----AG  171 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~----~~  171 (346)
                      ++.+.+.-|++||.-+|+....+.+  |.+   ...+++|+| ++..|++|. ..+|+++|+ +.|.....+..    ..
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence            9999999999999999998877764  322   456999999 888888765 589999999 54433222111    12


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      +..+-+.+++|+|.+...++.++....+-||.-..                       +.++..+.+|.+.|+.+.|.  
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----------------------~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----------------------RRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCC-----------------------CCceeeecccCCCeeeEEeccC
Confidence            34678999999998888999999888888877666                       56788899999999999999  


Q ss_pred             CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCc-CeeEEEEeecCCcceEEEEcCCCcEEEEEcCC-CCcc
Q 019117          250 GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPV  326 (346)
Q Consensus       250 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~-~~~~  326 (346)
                      |+.|.+|.. |..|..||++..+.        ++..+..|.+ .-..|-|.-+..+++|++|+.||.|++||+++ +..+
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~--------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRD--------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccc--------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            889988876 78899999998663        6667766665 45566676655558999999999999999998 6644


Q ss_pred             eee-eeeeeEEEEEecCC
Q 019117          327 LIA-RLICFSLHVKYNPQ  343 (346)
Q Consensus       327 ~~~-~~~~~~~~~~~spd  343 (346)
                      ... ....-++.++++|-
T Consensus       334 sv~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  334 SVTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             cccccccccccceecCcc
Confidence            433 34445777888874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.1e-23  Score=155.81  Aligned_cols=261  Identities=19%  Similarity=0.240  Sum_probs=186.3

Q ss_pred             CcccccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC------ceeee
Q 019117            1 MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG------GVIAA   73 (346)
Q Consensus         1 ~~~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~------~~~~~   73 (346)
                      ||..+.+....++.+ ......|.+....+.|.+.|..|.|.+  |+.|+.+|+++.|+ +.||.-...      .....
T Consensus        28 mAtCSsDq~vkI~d~-~~~s~~W~~Ts~Wrah~~Si~rV~WAh--PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~  104 (361)
T KOG2445|consen   28 MATCSSDQTVKIWDS-TSDSGTWSCTSSWRAHDGSIWRVVWAH--PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR  104 (361)
T ss_pred             eeeccCCCcEEEEec-cCCCCceEEeeeEEecCCcEEEEEecC--ccccceEEEEecCCceeeeeecccccccccceeEE
Confidence            344444444555554 335678899999999999999999986  45999999999999 999986311      11122


Q ss_pred             EeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc------ceeeeec-------cCCCceEEEEEeCC-
Q 019117           74 LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------KLHKSFV-------GHGDSINEIRTQPL-  139 (346)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~-------~~~~~v~~~~~~~~-  139 (346)
                      ....  ......|+.++|++..-|- .||+++.||.++||+.-..      .+...++       .+..+..|+.|+|. 
T Consensus       105 ~ttl--~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr  181 (361)
T KOG2445|consen  105 RTTL--VDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR  181 (361)
T ss_pred             EEEe--ecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccc
Confidence            2222  2366789999999888888 9999999999999986442      2222222       36677889999983 


Q ss_pred             -CCceEEEeeCC-----CCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCC---cEEEEEecCCeEEEEEccccce
Q 019117          140 -KPSLVVSASKD-----ESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       140 -~~~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                       ...+|+.|+.+     +.++||....+. .........+|..+|+.++|.|+-+   .+|++++.|| |+||.++....
T Consensus       182 ~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s  260 (361)
T KOG2445|consen  182 MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS  260 (361)
T ss_pred             ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc
Confidence             34578888766     478999775433 4444444448999999999999433   6889999999 99999987433


Q ss_pred             eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      .....   .........+.....+..+..|...|..+.|+  |..|++.|.||.||+|...-..
T Consensus       261 ~i~~e---e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  261 AIEEE---EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             hhhhh---cccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            22111   11112222233344566788999999999999  9999999999999999876543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=2e-24  Score=179.50  Aligned_cols=251  Identities=15%  Similarity=0.153  Sum_probs=196.6

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      ..-.+.+++.+|    +|+.||+|...| ++||++...+....+..     |+.+|.|+.+++-.-+..+||+++.|..|
T Consensus       458 ~r~G~R~~~vSp----~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-----HesEilcLeyS~p~~~~kLLASasrdRlI  528 (1080)
T KOG1408|consen  458 SRFGFRALAVSP----DGQHLASGDRGGNLRVYDLQELEYTCFMEA-----HESEILCLEYSFPVLTNKLLASASRDRLI  528 (1080)
T ss_pred             cccceEEEEECC----CcceecccCccCceEEEEehhhhhhhheec-----ccceeEEEeecCchhhhHhhhhccCCceE
Confidence            345699999999    899999999888 99999988777666653     88899999988644444599999999999


Q ss_pred             EEEEccCc-ceeeeeccCCCceEEEEEeCCCC-ceEEEeeCCCCEEEEecCCCeeEEEecc--cCCCCcceEEEEecCCC
Q 019117          111 RVIDVSNE-KLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       111 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~  186 (346)
                      +|||+... .+++++.+|...|+++.|...+. ..+++++.|..|.+--.+...-...+..  ..-....++.++..| .
T Consensus       529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~  607 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-T  607 (1080)
T ss_pred             EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-C
Confidence            99998654 57789999999999999988332 5788999998876432221111122221  001235788999999 8


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL  264 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~i  264 (346)
                      ..++++++.|+.|+|||+.+++.                    .+....-..|++...-+..+  |.|+++...|.++.+
T Consensus       608 ~k~v~t~cQDrnirif~i~sgKq--------------------~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~  667 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGKQ--------------------VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF  667 (1080)
T ss_pred             cceEEEEecccceEEEeccccce--------------------eeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence            89999999999999999998442                    11111222355555555555  889999999999999


Q ss_pred             EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +|..+++         ++.+..+|..-|+.+.|++|-  +.|++.+.||.|.||.+...
T Consensus       668 ~Df~sgE---------cvA~m~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  668 VDFVSGE---------CVAQMTGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             EEeccch---------hhhhhcCcchheeeeeecccc--hhheeecCCceEEEEECchh
Confidence            9999988         899999999999999999998  78999999999999999764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=5.4e-24  Score=176.99  Aligned_cols=286  Identities=13%  Similarity=0.144  Sum_probs=196.5

Q ss_pred             EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEE----------cCCCCcEEEEee
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC----------NVDGIPFLVAGG  105 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~l~~~~  105 (346)
                      .++.|.|    ....|...-.|. ++|||+.+-..+.....+..  |...|+.+...+          -|.+  .+++++
T Consensus       328 IA~~Fde----t~~klscVYndhSlYvWDvrD~~kvgk~~s~ly--HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCS  399 (1080)
T KOG1408|consen  328 IACQFDE----TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY--HSACIWDVENLPCNVHSPTAACLPRG--CFTTCS  399 (1080)
T ss_pred             eEEEecC----CCceEEEEEcCceEEEEeccccccccceeeeee--ccceeeeeccccccccCcccccCCcc--ceeEec
Confidence            3567877    345666665666 99999987665554443332  555565554331          1444  589999


Q ss_pred             cCCeEEEEEccCcceeee-------------------------------------eccCCCceEEEEEeCCCCceEEEee
Q 019117          106 INGIIRVIDVSNEKLHKS-------------------------------------FVGHGDSINEIRTQPLKPSLVVSAS  148 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~l~s~~  148 (346)
                      .|++|++|++..+..-..                                     .......+.+++.+| ++++|++|.
T Consensus       400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGD  478 (1080)
T KOG1408|consen  400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGD  478 (1080)
T ss_pred             CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccC
Confidence            999999999865211000                                     001234689999999 999999999


Q ss_pred             CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEEccccceee---------eeceee
Q 019117          149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYV---------EKSFTW  217 (346)
Q Consensus       149 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~  217 (346)
                      .-|+++||++...+.+..+.   +|+..|.|+.|+..  ..++|++++.|+-|++||+...-...         ..++.+
T Consensus       479 r~GnlrVy~Lq~l~~~~~~e---AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKF  555 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFME---AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKF  555 (1080)
T ss_pred             ccCceEEEEehhhhhhhhee---cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEE
Confidence            99999999999888887777   89999999999841  34789999999999999997621111         001111


Q ss_pred             cCCC--CC-----------CCCcc-----ceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc
Q 019117          218 TDLP--SK-----------FPTKY-----VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG  277 (346)
Q Consensus       218 ~~~~--~~-----------~~~~~-----~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~  277 (346)
                      ....  ..           +....     ...+..+.......+..++..  .+++++++.|..|+|||+.+++      
T Consensus       556 a~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK------  629 (1080)
T KOG1408|consen  556 ACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK------  629 (1080)
T ss_pred             eecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc------
Confidence            1100  00           00000     000001111112235555555  6799999999999999999998      


Q ss_pred             cccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEEEecCCCC
Q 019117          278 TADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHVKYNPQSV  345 (346)
Q Consensus       278 ~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~spdg~  345 (346)
                         ..+.|++   |++....+...|.+  .|+++...|.++.++|+.+++.+. .+.+...++.+.|.||-+
T Consensus       630 ---q~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  630 ---QVKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK  696 (1080)
T ss_pred             ---eeeeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence               4444544   66778888888888  899999999999999999999765 455666689999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=4.9e-24  Score=161.49  Aligned_cols=271  Identities=14%  Similarity=0.188  Sum_probs=199.7

Q ss_pred             eeeeec--ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           24 RVTNKL--QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        24 ~~~~~~--~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ++++.+  ..|.+.-+.++|+-+-.....++|.++.-| |+|.|+.+++..+.+..     |+..|..+.+.  |+..++
T Consensus        78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g-----hG~sINeik~~--p~~~ql  150 (385)
T KOG1034|consen   78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG-----HGGSINEIKFH--PDRPQL  150 (385)
T ss_pred             eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec-----cCccchhhhcC--CCCCcE
Confidence            444444  347888999999973321245788888777 99999999998888875     88899999888  777669


Q ss_pred             EEEeecCCeEEEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE------------
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL------------  165 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------  165 (346)
                      +++++.|..|++|++++..++..+   .+|.+.|.++.|++ ++.+|++++.|.+|++|++...+...            
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~  229 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK  229 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence            999999999999999999988876   56999999999999 88899999999999999998332111            


Q ss_pred             -------------EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          166 -------------IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       166 -------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                                   .+....-|...|-|+.|-   ++++++-+.++.|..|..........         ...+.+.....
T Consensus       230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~---------~vkp~es~~Ti  297 (385)
T KOG1034|consen  230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIH---------NVKPPESATTI  297 (385)
T ss_pred             ccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhh---------ccCCCccceee
Confidence                         111122467777778775   47899999999999998854222100         00111112223


Q ss_pred             eEEEeecccceEEEEec----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE
Q 019117          233 VFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  308 (346)
Q Consensus       233 ~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  308 (346)
                      +..+......|.-+.|.    ++.|+.|...|.|.+||++..++..   .  ...........|...+||.|+  .+|+.
T Consensus       298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~---~--ttl~~s~~~~tVRQ~sfS~dg--s~lv~  370 (385)
T KOG1034|consen  298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK---C--TTLTHSKSGSTVRQTSFSRDG--SILVL  370 (385)
T ss_pred             eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc---C--ceEEeccccceeeeeeecccC--cEEEE
Confidence            44555556667777776    7899999999999999999876421   0  111112234578999999999  78999


Q ss_pred             EcCCCcEEEEEcC
Q 019117          309 GNREGKIFVWELQ  321 (346)
Q Consensus       309 ~~~dg~i~iwd~~  321 (346)
                      ..+|+.|.-||.-
T Consensus       371 vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  371 VCDDGTVWRWDRV  383 (385)
T ss_pred             EeCCCcEEEEEee
Confidence            9999999999853

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=6.8e-24  Score=169.22  Aligned_cols=260  Identities=13%  Similarity=0.253  Sum_probs=194.6

Q ss_pred             eEEEEEEeecCCCccEEEEEcC--Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~--~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      +..+.|+.     ...|++++.  |. |++|. +.++ ...++..... .++.-.|++..  .... |+++|+..+.|+|
T Consensus        37 ~~s~~w~~-----~n~lvvas~~gdk~~~~~~-K~g~-~~~Vp~~~k~-~gd~~~Cv~~~--s~S~-y~~sgG~~~~Vki  105 (673)
T KOG4378|consen   37 DFSFNWQR-----RNFLVVASMAGDKVMRIKE-KDGK-TPEVPRVRKL-TGDNAFCVACA--SQSL-YEISGGQSGCVKI  105 (673)
T ss_pred             ceeeeccc-----cceEEEeecCCceeEEEec-ccCC-CCccceeecc-ccchHHHHhhh--hcce-eeeccCcCceeee
Confidence            88999986     234555554  44 67776 4443 2222221111 22223333332  3345 9999999999999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      ||++...+.+.+++|...|+++.++. ...+|++++..|.|.|..+.++.....|..  +....|+-+.|+|....+|.+
T Consensus       106 wdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr~lL~~  182 (673)
T KOG4378|consen  106 WDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKRFLLSI  182 (673)
T ss_pred             hhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec--CCCCeEEEeecccccceeeEe
Confidence            99997778889999999999999998 889999999999999999999988888873  234567799999966778888


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~  269 (346)
                      ++.+|.|.+||+.....                      ...-...|..+...++|+   ..+|++.+.|..|.+||+..
T Consensus       183 asd~G~VtlwDv~g~sp----------------------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSP----------------------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             eccCCeEEEEeccCCCc----------------------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            99999999999988321                      122345688888899998   56899999999999999997


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC-cceee-eeeeeEEEEEecCC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVLIA-RLICFSLHVKYNPQ  343 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~~~~~~spd  343 (346)
                      .+         ....+. -..+...++|+++|  .+|++|...|.|..||++..+ |+... .+...|++++|-|.
T Consensus       241 ~~---------s~~~l~-y~~Plstvaf~~~G--~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  241 QA---------STDRLT-YSHPLSTVAFSECG--TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             cc---------ccceee-ecCCcceeeecCCc--eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            65         222222 24578899999999  799999999999999998854 44333 34455899998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=7.2e-23  Score=169.45  Aligned_cols=276  Identities=20%  Similarity=0.262  Sum_probs=205.0

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEe
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      .+.||.+.|+++.|+|    .+..|++++.|. +.+|...+..-+..-..-..+.  .....+..-|+  |++. .+++-
T Consensus       262 ll~GHeDWV~sv~W~p----~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~--~n~~-~ii~~  334 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHP----EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS--PNSN-VIIAH  334 (764)
T ss_pred             hhcCcccceEEEEEcc----chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc--CCCC-EEEEe
Confidence            3469999999999999    677888888888 9999876653333222222222  23346666665  8887 88899


Q ss_pred             ecCCeEEEEEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CC----------------eeE
Q 019117          105 GINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TG----------------ICI  164 (346)
Q Consensus       105 ~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~----------------~~~  164 (346)
                      +..|..++|.....   .+...+.+|.+.|.+++|.| .+.+|++.+.|.+-+++-.- ..                +++
T Consensus       335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~  413 (764)
T KOG1063|consen  335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL  413 (764)
T ss_pred             cccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence            99999999983322   24456679999999999999 88999999999998887532 00                111


Q ss_pred             E------------------EecccC-------------------------------------------------------
Q 019117          165 L------------------IFAGAG-------------------------------------------------------  171 (346)
Q Consensus       165 ~------------------~~~~~~-------------------------------------------------------  171 (346)
                      .                  .|..+.                                                       
T Consensus       414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~  493 (764)
T KOG1063|consen  414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL  493 (764)
T ss_pred             ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence            1                  111000                                                       


Q ss_pred             -----------------------------CCCcceEEEEecCCCCcEEEEEecC-----CeEEEEEccccceeeeeceee
Q 019117          172 -----------------------------GHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTW  217 (346)
Q Consensus       172 -----------------------------~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~  217 (346)
                                                   +|...|++++.+| ++++++++...     ..|++|+..+           
T Consensus       494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~-----------  561 (764)
T KOG1063|consen  494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN-----------  561 (764)
T ss_pred             ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc-----------
Confidence                                         8999999999998 99999998654     3689999887           


Q ss_pred             cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEE
Q 019117          218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  295 (346)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  295 (346)
                                  -.....+.+|.-.|+.+.|+  +++|++.+.|.++.+|.........     ......+.|.--|+++
T Consensus       562 ------------W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdc  624 (764)
T KOG1063|consen  562 ------------WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDC  624 (764)
T ss_pred             ------------hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEc
Confidence                        34455789999999999999  8999999999999999985543211     0133367788889999


Q ss_pred             EEeecCCcceEEEEcCCCcEEEEEcCCC--Ccce---eeeeeeeEEEEEecC
Q 019117          296 KFSCDFHYNAAAIGNREGKIFVWELQSS--PPVL---IARLICFSLHVKYNP  342 (346)
Q Consensus       296 ~~s~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~---~~~~~~~~~~~~~sp  342 (346)
                      .|+|++  .+++|+|.|.+|++|.....  +.+.   ..++...++.++|-|
T Consensus       625 sW~pde--~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  625 SWSPDE--KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             ccCccc--ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            999999  67999999999999999887  3222   234455677777765

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=5.8e-24  Score=158.42  Aligned_cols=239  Identities=19%  Similarity=0.261  Sum_probs=181.4

Q ss_pred             cceeeeeecc-cCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           21 REYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ..++++..|. .+-+.|.||.|.|    ++..+++-.++.|.+|++..+.. ...+.......+....++-+|+++.+|.
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~P----ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEP----NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcC----CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence            3467777774 6667999999999    67889988878899999988776 4444443333456677888899888998


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcc
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNE  176 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~  176 (346)
                       .+++.+ |+++..||+++.+....+ .+|...|..+.|+|....+|++|++||.|++||.+.. .++..+.   +|.-.
T Consensus       186 -qv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHW  260 (370)
T KOG1007|consen  186 -QVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHW  260 (370)
T ss_pred             -eEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceE
Confidence             776665 899999999988776665 4688899999999977778999999999999999854 4666776   89999


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC-----CCCc-cceeceEEEeecccceEEEEec-
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK-----FPTK-YVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      |.++.|+|....++++++.|..|.+|............+........     ...+ .....+.++..|++.|.+++|+ 
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence            99999999778899999999999999887743222111111110000     0001 1122355788999999999999 


Q ss_pred             --CCEEEEEeecCeEEEEcCC
Q 019117          250 --GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       250 --~~~l~~~~~d~~i~iwd~~  268 (346)
                        +=.+++-+.||++.|=.+.
T Consensus       341 adPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  341 ADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             CCCeeEEEeccCceEEeecCC
Confidence              5589999999999887664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5e-25  Score=191.85  Aligned_cols=228  Identities=14%  Similarity=0.261  Sum_probs=180.9

Q ss_pred             CccceEEEEEEEcCCCCc---EEEEeecCCeEEEEEccCc------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC
Q 019117           82 KEESFYTVSWACNVDGIP---FLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES  152 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  152 (346)
                      ...+.+.++|.  +.|..   +|+.|..||.|.+||...-      ..+.+...|++.|..+.|++..+++|++|+.||.
T Consensus        63 s~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   63 SSNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE  140 (1049)
T ss_pred             ccccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence            45678889998  43432   5999999999999998652      3456777899999999999977789999999999


Q ss_pred             EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       153 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                      |.|||+...+.-.... .....+.|.+++|+......|++++.+|.+.|||++.                       ..+
T Consensus       141 I~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-----------------------~~p  196 (1049)
T KOG0307|consen  141 ILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-----------------------KKP  196 (1049)
T ss_pred             EEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccC-----------------------CCc
Confidence            9999998754443332 1135688999999986778899999999999999998                       344


Q ss_pred             eEEEeeccc--ceEEEEec---CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117          233 VFIASVHSN--YVDCNRWL---GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       233 ~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  304 (346)
                      +..+..+..  .+..+.|+   ...+++++.|.   .|.+||++...        .+++.+.+|...|.++.|++.+. .
T Consensus       197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~GilslsWc~~D~-~  267 (1049)
T KOG0307|consen  197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLSWCPQDP-R  267 (1049)
T ss_pred             ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------CchhhhcccccceeeeccCCCCc-h
Confidence            555555554  36678888   34667766653   59999998754        37888899999999999999876 6


Q ss_pred             eEEEEcCCCcEEEEEcCCCCcceeeeeeee-EEEEEecCCC
Q 019117          305 AAAIGNREGKIFVWELQSSPPVLIARLICF-SLHVKYNPQS  344 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~spdg  344 (346)
                      +|++++.|+.|.+|+.++++.+..+...+. +..+.|.|..
T Consensus       268 lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~  308 (1049)
T KOG0307|consen  268 LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN  308 (1049)
T ss_pred             hhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence            999999999999999999997776665443 6679998854

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=6.4e-23  Score=153.04  Aligned_cols=282  Identities=16%  Similarity=0.288  Sum_probs=202.2

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-----CcEEEEEecc--CceeeeEeeeecCCCccceEEEEEEEc
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----NRVTVYQCLE--GGVIAALQSYVDEDKEESFYTVSWACN   94 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-----~~v~i~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~   94 (346)
                      ..+....+.. .-+++++.|+.. +....+||.|+-     +.|.|..+..  ++.+..-    ...|.-+++.+.|.++
T Consensus        34 r~~eiy~Y~a-p~~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a----~fd~~YP~tK~~wiPd  107 (364)
T KOG0290|consen   34 RRKEIYTYNA-PWPLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA----NFDHPYPVTKLMWIPD  107 (364)
T ss_pred             ccceEEEecC-CCceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccC----CCCCCCCccceEecCC
Confidence            3333444433 346899999963 335678888874     2366665543  2222221    1347778888888866


Q ss_pred             CCCC--cEEEEeecCCeEEEEEccCcc--e--eee-----eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117           95 VDGI--PFLVAGGINGIIRVIDVSNEK--L--HKS-----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus        95 ~~~~--~~l~~~~~dg~i~iwd~~~~~--~--~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      +.|.  .+||+.+  ..+++|.+...+  .  ...     -..+..++++..|+..+.+++.+++-|-+..|||++++..
T Consensus       108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~  185 (364)
T KOG0290|consen  108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS  185 (364)
T ss_pred             ccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc
Confidence            5432  2566554  479999987422  1  111     1236679999999998999999999999999999998732


Q ss_pred             ---EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          164 ---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       164 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                         ...+-   +|..+|..++|...+...+++.+.||.+++||+|.....                    ..++.-....
T Consensus       186 ~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--------------------TIIYE~p~~~  242 (364)
T KOG0290|consen  186 GTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--------------------TIIYEDPSPS  242 (364)
T ss_pred             cceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--------------------eEEecCCCCC
Confidence               23333   699999999999755688999999999999999983320                    0111111114


Q ss_pred             cceEEEEec---CCEEEEEeec-CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          241 NYVDCNRWL---GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       241 ~~i~~~~~~---~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      .+...++|+   .+++++-..| ..|.|-|++...        .++.++.+|.+.|..++|.|... ..+++++.|..+.
T Consensus       243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~VNgIaWaPhS~-~hictaGDD~qal  313 (364)
T KOG0290|consen  243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQASVNGIAWAPHSS-SHICTAGDDCQAL  313 (364)
T ss_pred             CcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCcccccceEecCCCC-ceeeecCCcceEE
Confidence            456777887   6688887665 569999999865        37889999999999999999887 6999999999999


Q ss_pred             EEEcCCCC------cceeeeeeeeEEEEEecCC
Q 019117          317 VWELQSSP------PVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       317 iwd~~~~~------~~~~~~~~~~~~~~~~spd  343 (346)
                      +||+....      ++..+...+.++.+.|+|.
T Consensus       314 iWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  314 IWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             EEecccccccCCCCchhhhhccceeeeeeeccc
Confidence            99997632      4556677778999999974

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=158.76  Aligned_cols=238  Identities=16%  Similarity=0.233  Sum_probs=185.6

Q ss_pred             CCceEEEEEEe----ecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccce-EEEEEEEcCCCCcEEEEeec
Q 019117           33 KRPLYAVVFNF----IDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESF-YTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        33 ~~~v~~~~~~p----~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~  106 (346)
                      ...|+.-+|-+    .+| +..++|+.+.+. |++||..+|+....+..+.   |.+.+ .+.++.|+|||. +|++|. 
T Consensus       104 g~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~yd---h~de~taAhsL~Fs~DGe-qlfaGy-  177 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYD---HQDEYTAAHSLQFSPDGE-QLFAGY-  177 (406)
T ss_pred             CCEEEEEEeeeccccCCC-ccceeeeccccCceeeeeccccccccchhhhh---hHHhhhhheeEEecCCCC-eEeecc-
Confidence            45688888875    233 557888888888 9999999999887776653   33333 335667779999 887776 


Q ss_pred             CCeEEEEEc-cCcce--eeee-----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          107 NGIIRVIDV-SNEKL--HKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       107 dg~i~iwd~-~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      ...|+++|+ +.|+.  +...     .+..+.+.+++|+|.+...++.|+...++-|+.-..+.++..+.   +|.+.|+
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvT  254 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVT  254 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCee
Confidence            678999998 45542  1111     23467899999999888899999999999999988899999888   8999999


Q ss_pred             EEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-ceEEEEec----CCE
Q 019117          179 SVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWL----GDF  252 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~----~~~  252 (346)
                      .+.|.+ +++.|++|.. |..|..||+|..                      ..++..+..|.. .-..|.|+    +++
T Consensus       255 hL~~~e-dGn~lfsGaRk~dkIl~WDiR~~----------------------~~pv~~L~rhv~~TNQRI~FDld~~~~~  311 (406)
T KOG2919|consen  255 HLQWCE-DGNKLFSGARKDDKILCWDIRYS----------------------RDPVYALERHVGDTNQRILFDLDPKGEI  311 (406)
T ss_pred             eEEecc-CcCeecccccCCCeEEEEeehhc----------------------cchhhhhhhhccCccceEEEecCCCCce
Confidence            999998 8888888876 678999999983                      446666766665 44556665    889


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      |++|+.||.|++||++..-        ..+..+..+...+..++++|--  .++|+++..
T Consensus       312 LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd~vNgvslnP~m--pilatssGq  361 (406)
T KOG2919|consen  312 LASGDTDGSVRVWDLKDLG--------NEVSVTGNYSDTVNGVSLNPIM--PILATSSGQ  361 (406)
T ss_pred             eeccCCCccEEEEecCCCC--------CcccccccccccccceecCccc--ceeeeccCc
Confidence            9999999999999999843        1455666677889999999986  678887754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=164.62  Aligned_cols=252  Identities=17%  Similarity=0.254  Sum_probs=192.2

Q ss_pred             eeecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ++.+.-...+|.+.+|.|    +|. .+++++... ++.||+.+.+..+.-+....  ....+.  .|..+++++ +|+.
T Consensus       250 lqS~~l~~fPi~~a~f~p----~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~--e~~~~e--~FeVShd~~-fia~  320 (514)
T KOG2055|consen  250 LQSIHLEKFPIQKAEFAP----NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV--EEKSME--RFEVSHDSN-FIAI  320 (514)
T ss_pred             heeeeeccCccceeeecC----CCceEEEecccceEEEEeeccccccccccCCCCc--ccchhh--eeEecCCCC-eEEE
Confidence            334444567899999999    666 777777777 99999987765433222111  122332  355569999 9999


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce--EEEE
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV--LSVD  181 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~  181 (346)
                      .+..|.|.+....+++.+..++ -.+.|..++|+. ++..|++++.+|.|.+||++...++..+.    ..+.|  ++++
T Consensus       321 ~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~----D~G~v~gts~~  394 (514)
T KOG2055|consen  321 AGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFV----DDGSVHGTSLC  394 (514)
T ss_pred             cccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEe----ecCccceeeee
Confidence            9999999999999999998888 568899999998 77888888889999999999999999997    44444  4666


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  258 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  258 (346)
                      .++ ++.+|++|+..|.|.|||..+..                 ....+.|+..+..-...|+++.|+  .++|+.++. 
T Consensus       395 ~S~-ng~ylA~GS~~GiVNIYd~~s~~-----------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~  456 (514)
T KOG2055|consen  395 ISL-NGSYLATGSDSGIVNIYDGNSCF-----------------ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV  456 (514)
T ss_pred             ecC-CCceEEeccCcceEEEeccchhh-----------------ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence            677 88899999999999999987621                 111245666666667789999998  677777765 


Q ss_pred             -cCeEEEEcCCCCCCCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          259 -DNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       259 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                       +..+|+-.+.+..         ....++.   .-+.|+|++|||.+  .+||.|..+|.+.+|.+.
T Consensus       457 ~knalrLVHvPS~T---------VFsNfP~~n~~vg~vtc~aFSP~s--G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  457 KKNALRLVHVPSCT---------VFSNFPTSNTKVGHVTCMAFSPNS--GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             cccceEEEecccee---------eeccCCCCCCcccceEEEEecCCC--ceEEeecCCCceeeEeec
Confidence             6789998887654         2223322   34679999999988  699999999999999875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=2.7e-23  Score=164.00  Aligned_cols=232  Identities=11%  Similarity=0.119  Sum_probs=177.9

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN  157 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  157 (346)
                      +.+.|.+++|.+..+-+ ++++|...|.|-+||+.+.+    -+..+..|..+|.++.|+|.+...+++.|.||+|++-|
T Consensus       185 ~~~Rit~l~fHPt~~~~-lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRK-LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             cccceEEEEecccCcce-EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            67789999988554445 99999999999999996332    35567789999999999999899999999999999999


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      ++.......+.. ......+..+.|+. +...++.++.=|...+||++...                      .....+.
T Consensus       264 ~~~~i~e~v~s~-~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~----------------------s~~~~~~  319 (498)
T KOG4328|consen  264 FEGNISEEVLSL-DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDG----------------------SEYENLR  319 (498)
T ss_pred             ecchhhHHHhhc-CccceeeeeccccC-CCccEEEeecccceEEEEeecCC----------------------ccchhhh
Confidence            986644333321 02456778888987 66666667666799999999833                      2345667


Q ss_pred             ecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117          238 VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       238 ~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                      .|...|.+++++   ..+|++++.|++.+|||++.......     ++-..-.|...|.++.|||++  -.|++.+.|..
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~--gtl~TT~~D~~  392 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG--GTLLTTCQDNE  392 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC--CceEeeccCCc
Confidence            788899999998   67999999999999999997653221     223334578899999999999  45999999999


Q ss_pred             EEEEEc----CCCCcceeeeeeee------EEEEEecCCCC
Q 019117          315 IFVWEL----QSSPPVLIARLICF------SLHVKYNPQSV  345 (346)
Q Consensus       315 i~iwd~----~~~~~~~~~~~~~~------~~~~~~spdg~  345 (346)
                      |+|||.    ...++...+.+...      .....|.||-.
T Consensus       393 IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~  433 (498)
T KOG4328|consen  393 IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN  433 (498)
T ss_pred             eEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence            999999    45555556555433      23477888754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.7e-23  Score=156.05  Aligned_cols=223  Identities=13%  Similarity=0.180  Sum_probs=168.3

Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      +.++.|++.|. +||+|..||.|.|||+.+...-+.+.+|..+|.+++|++ ++..|+++|.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEE
Confidence            35556669999 999999999999999999998899999999999999999 9999999999999999999999999999


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  247 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  247 (346)
                      +    ..++|..+.|+|.+.+..+..-.+..-.+-++........ +..           . ...+...      -.+..
T Consensus       104 r----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L-p~d-----------~-d~dln~s------as~~~  160 (405)
T KOG1273|consen  104 R----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL-PKD-----------D-DGDLNSS------ASHGV  160 (405)
T ss_pred             E----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec-cCC-----------C-ccccccc------ccccc
Confidence            8    8999999999996667666666665555555554111000 000           0 0000000      11123


Q ss_pred             ec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC--
Q 019117          248 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS--  322 (346)
Q Consensus       248 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~--  322 (346)
                      |+  |+++++|...|.+.++|..+.+         ++..++... ..|..+.++..|  ++|+.-+.|..|+.|+++.  
T Consensus       161 fdr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  161 FDRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYEISDID  229 (405)
T ss_pred             ccCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEehhhhc
Confidence            43  9999999999999999999876         555555444 678899999999  7899999999999999873  


Q ss_pred             -----CCcceeeeeeee-----EEEEEecCCCCC
Q 019117          323 -----SPPVLIARLICF-----SLHVKYNPQSVY  346 (346)
Q Consensus       323 -----~~~~~~~~~~~~-----~~~~~~spdg~~  346 (346)
                           +++....++..-     ..+++||.||.|
T Consensus       230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             ccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence                 223223333322     346888988876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.91  E-value=2.5e-24  Score=181.64  Aligned_cols=268  Identities=13%  Similarity=0.229  Sum_probs=211.1

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      +..+....|.||.++|+|+.|..    .|.++.+|++|. |+||...++.++..+.+     |.+.++.++..  .++. 
T Consensus       178 qkmk~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rG-----hs~ditdlavs--~~n~-  245 (1113)
T KOG0644|consen  178 QKMKNIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRG-----HSGDITDLAVS--SNNT-  245 (1113)
T ss_pred             HHHHHHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCC-----Cccccchhccc--hhhh-
Confidence            45667778899999999999987    889999999999 99999999988888876     77778888876  4555 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC-CCCcceE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-GHRNEVL  178 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~  178 (346)
                      ++++++.|..|++|.+.++.++..+.+|++.|++++|+| -.    +.+.||++++||.+-.-.+..-.... .....+.
T Consensus       246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~  320 (1113)
T KOG0644|consen  246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-RA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD  320 (1113)
T ss_pred             hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-cc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence            899999999999999999999999999999999999999 32    77899999999988221111111100 1234566


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~  255 (346)
                      ++.|.. .+.-++|++.|+.-..|.+..                             +..+...+.-+.++   ..+.++
T Consensus       321 s~~~~~-~~~~f~Tgs~d~ea~n~e~~~-----------------------------l~~~~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  321 SILFEN-NGDRFLTGSRDGEARNHEFEQ-----------------------------LAWRSNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             eeeccc-cccccccccCCcccccchhhH-----------------------------hhhhccceEEEecccccccccee
Confidence            677765 788899999999998887765                             12222222222222   356777


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-ee
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CF  334 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~  334 (346)
                      +-.+..+.+|++.++.         .++.+.+|...+..+.++|-.. +...+++.||+..|||+..|.+...+... +.
T Consensus       371 ar~~~~~~vwnl~~g~---------l~H~l~ghsd~~yvLd~Hpfn~-ri~msag~dgst~iwdi~eg~pik~y~~gh~k  440 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQ---------LLHNLMGHSDEVYVLDVHPFNP-RIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK  440 (1113)
T ss_pred             eeeeeEeeeeecccch---------hhhhhcccccceeeeeecCCCc-HhhhhccCCCceEeeecccCCcceeeecccce
Confidence            7788899999999887         6788889999999999999775 67888999999999999999988877643 23


Q ss_pred             EEEEEecCCCC
Q 019117          335 SLHVKYNPQSV  345 (346)
Q Consensus       335 ~~~~~~spdg~  345 (346)
                      ....+||+||.
T Consensus       441 l~d~kFSqdgt  451 (1113)
T KOG0644|consen  441 LVDGKFSQDGT  451 (1113)
T ss_pred             eeccccCCCCc
Confidence            66789999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.3e-23  Score=163.78  Aligned_cols=253  Identities=14%  Similarity=0.181  Sum_probs=186.1

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe--ecCCeEEEEEccCc--ceeeeec
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNE--KLHKSFV  125 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~--~~~~~~~  125 (346)
                      ++.+..++|.+++||.........+..+..   ...+..++|.  ..+  +|+++  +.|..+++|.-...  +....-+
T Consensus         4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~--~~n--~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k   76 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQ--RRN--FLVVASMAGDKVMRIKEKDGKTPEVPRVRK   76 (673)
T ss_pred             ceeeeccCCceEEeecccccCccccccCCC---CCcceeeecc--ccc--eEEEeecCCceeEEEecccCCCCccceeec
Confidence            466666677899999987766555554432   2337777776  333  34444  56778999974322  1212112


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                      ...+.-.|++... ...++++|+..+.|+|||++...+.+.++   +|...|+++.++. ...+|++++..|-|.+..+.
T Consensus        77 ~~gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk---dh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~  151 (673)
T KOG4378|consen   77 LTGDNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLK---DHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTK  151 (673)
T ss_pred             cccchHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhcc---CCcceeEEEEecC-CcceeEEeccCCcEEEEecc
Confidence            2223445666555 55799999999999999999766666777   8999999999996 78899999999999999998


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      +...                       ...+... ...|+-+.|+   ..+|.+++.+|.|.+||.....+        .
T Consensus       152 t~~~-----------------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------~  200 (673)
T KOG4378|consen  152 TKQK-----------------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------I  200 (673)
T ss_pred             cCcc-----------------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------c
Confidence            8332                       1122222 2335567776   45788899999999999987653        3


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ..-...|..+...++|+|..+ .+|++.+.|..|.+||..............+...++|+|+|-|
T Consensus       201 ~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  201 FHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTY  264 (673)
T ss_pred             cchhhhccCCcCcceecCCcc-ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceE
Confidence            444566888999999999887 7999999999999999998877777777778889999999965

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.90  E-value=3e-22  Score=149.52  Aligned_cols=257  Identities=15%  Similarity=0.209  Sum_probs=190.6

Q ss_pred             ccCCCceEEEEEEeecC-CCccEEEEEcCCcEEEEEeccCcee----eeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           30 QEGKRPLYAVVFNFIDS-RYFNVFATVGGNRVTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~-~~~~~la~~~~~~v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ..|.-+++.+-|.|+.. ..-++||++ +|.+++|.+...+..    ..+.......+..++++..|.  .-..+++.+.
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn--e~dp~~igtS  169 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN--EVDPNLIGTS  169 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc--cCCcceeEee
Confidence            35888999999999431 122455555 678999998743221    122222333455677777776  3333399999


Q ss_pred             ecCCeEEEEEccCcce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          105 GINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      +-|-+..|||++++..   ...+-+|..+|.+|+|...+.+.|++.+.||.|++||++..+.-..+-.......+...++
T Consensus       170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS  249 (364)
T ss_pred             cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence            9999999999998733   4456679999999999986678999999999999999998766555543323356888999


Q ss_pred             ecCCCCcEEEEEecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEe
Q 019117          182 FHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKS  257 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~  257 (346)
                      |++++.+++++-..|. .|.+.|+|..                      ..++..+..|...|..++|.   ...|++++
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P----------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVP----------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCC----------------------CcceehhhcCcccccceEecCCCCceeeecC
Confidence            9998889999887765 5999999983                      35788899999999999998   67999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      .|..+.+||+...-..   ....++..+. -.+.|..+.|++... .+++.+... ++.+
T Consensus       308 DD~qaliWDl~q~~~~---~~~dPilay~-a~~EVNqi~Ws~~~~-Dwiai~~~k-klei  361 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRE---NGEDPILAYT-AGGEVNQIQWSSSQP-DWIAICFGK-KLEI  361 (364)
T ss_pred             CcceEEEEeccccccc---CCCCchhhhh-ccceeeeeeecccCC-CEEEEEecC-eeeE
Confidence            9999999999875431   1222344444 456899999997654 688877643 4443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-21  Score=167.29  Aligned_cols=228  Identities=14%  Similarity=0.150  Sum_probs=180.4

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                      |....+.++|.  |+|+ +|++++.||.|++|+.... +.-..+..+...|.+++..   .++|++|+.+++|.+|.+..
T Consensus        12 ht~G~t~i~~d--~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   12 HTGGLTLICYD--PDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             ccCceEEEEEc--CCCC-EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCC
Confidence            55566667766  9999 9999999999999997665 4444555578888888875   46999999999999999998


Q ss_pred             CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      ++.-..+.   ...-++++++|+. +|.+++.|+.|-.|++-++..                       ......+.+|.
T Consensus        86 ~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-----------------------~s~~~~lrgh~  138 (933)
T KOG1274|consen   86 GEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-----------------------SSQEKVLRGHD  138 (933)
T ss_pred             CCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-----------------------cchheeecccC
Confidence            87665555   3667899999997 999999999999999999988                       34567889999


Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      .+|.++.|+  +++||+.+.||.|++||+.++..........  ...... ...+..++|+|++  ..++..+.|+.|++
T Consensus       139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~--k~n~~~~s~i~~~~aW~Pk~--g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD--KDNEFILSRICTRLAWHPKG--GTLAVPPVDNTVKV  214 (933)
T ss_pred             CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC--ccccccccceeeeeeecCCC--CeEEeeccCCeEEE
Confidence            999999999  8899999999999999999876322211111  111111 3456778999998  56888888999999


Q ss_pred             EEcCCCCcceeeeeee---eEEEEEecCCCCC
Q 019117          318 WELQSSPPVLIARLIC---FSLHVKYNPQSVY  346 (346)
Q Consensus       318 wd~~~~~~~~~~~~~~---~~~~~~~spdg~~  346 (346)
                      |+..+.+.........   ....++|||+|+|
T Consensus       215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             EccCCceeheeecccccccceEEEEEcCCCcE
Confidence            9999998766554432   2678999999987

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=2.5e-21  Score=163.81  Aligned_cols=255  Identities=18%  Similarity=0.198  Sum_probs=191.9

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      -...|+|++|+|.+   ..++|.|..+| |.+||+..+..  ...+. .....|...+..+.|..++.+. -+++++.||
T Consensus       241 ~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~~vvW~~~~~~~-~f~s~ssDG  315 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVTAVVWLQNEHNT-EFFSLSSDG  315 (555)
T ss_pred             cCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeEEEEEeccCCCC-ceEEEecCC
Confidence            45789999999954   58999999998 99999987765  33333 3334588999999999777664 788999999


Q ss_pred             eEEEEEccCcce-e-----eeec------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE----E-ecccC
Q 019117          109 IIRVIDVSNEKL-H-----KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL----I-FAGAG  171 (346)
Q Consensus       109 ~i~iwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~-~~~~~  171 (346)
                      .|..|+++.-.. .     ....      .-...+++++|.+.+...|+.|+++|.|.--+....+.-.    + .....
T Consensus       316 ~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~  395 (555)
T KOG1587|consen  316 SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI  395 (555)
T ss_pred             cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence            999998764321 1     1111      1234689999999899999999999998773332221111    1 11122


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      .|.++|+++.++|.....+++++ |.++++|....                      ...|+..+..+.+.|++++|+  
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~----------------------~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV----------------------IASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             ccCcceEeeecCCCccceeeeec-cceeEeccccC----------------------CCCcchhhhhccceeeeeEEcCc
Confidence            68899999999996666666666 99999999873                      145777888888899999999  


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                       +..|+++..||.+.+||+......       ++.+..........+.|++.+  ++|++|...|.+++|++...
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~-------Pv~s~~~~~~~l~~~~~s~~g--~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEE-------PVLSQKVCSPALTRVRWSPNG--KLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccC-------CcccccccccccceeecCCCC--cEEEEecCCCcEEEEEcCch
Confidence             668999999999999999876532       334444445566778888888  79999999999999999653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-20  Score=156.16  Aligned_cols=253  Identities=16%  Similarity=0.195  Sum_probs=191.2

Q ss_pred             ceeeeeecccC-CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .|-+...+.++ ...|-+++|++    .+++|-++..+.|.-||+.++++...+..     ..+.+++++.+  |.+. .
T Consensus        57 ~w~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-----~gg~IWsiai~--p~~~-~  124 (691)
T KOG2048|consen   57 NWFLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHTLKQKYNIDS-----NGGAIWSIAIN--PENT-I  124 (691)
T ss_pred             CceeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEecccCceeEEecC-----CCcceeEEEeC--Cccc-e
Confidence            45556666666 46799999996    44555555444499999999998877764     67889999887  7777 9


Q ss_pred             EEEeecCCeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-----cCCC
Q 019117          101 LVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-----AGGH  173 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~  173 (346)
                      ++.|+.||.+..++...++..  ..+...++.|.+++|+| ++..+++|+.||.|++||...+..+.....     ....
T Consensus       125 l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~  203 (691)
T KOG2048|consen  125 LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE  203 (691)
T ss_pred             EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence            999999998888887777644  34445678999999999 888999999999999999999887762221     1113


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD  251 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  251 (346)
                      ..-|.++.|-  ....|++|...|+|.+||...                       ...+.....|...|.+++..  ++
T Consensus       204 ~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~-----------------------gTLiqS~~~h~adVl~Lav~~~~d  258 (691)
T KOG2048|consen  204 PTIVWSVLFL--RDSTIASGDSAGTVTFWDSIF-----------------------GTLIQSHSCHDADVLALAVADNED  258 (691)
T ss_pred             ceEEEEEEEe--ecCcEEEecCCceEEEEcccC-----------------------cchhhhhhhhhcceeEEEEcCCCC
Confidence            3457788877  345799999999999999988                       44566788899999999998  68


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++.+++.|+.|.-+...+.+..     .........|...|.+++..++    .+++|+.|..+.+--..
T Consensus       259 ~vfsaGvd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~~----~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  259 RVFSAGVDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIEN----ALISGGRDFTLAICSSR  319 (691)
T ss_pred             eEEEccCCCceEEEEecCCccc-----eeeeccccCCcccceeeeeecc----eEEecceeeEEEEcccc
Confidence            9999999999999998877531     1123334456667888877764    46677777666655443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.8e-22  Score=150.11  Aligned_cols=193  Identities=17%  Similarity=0.270  Sum_probs=144.1

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee--ecc
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVG  126 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~  126 (346)
                      ..+|++-+++ |++||..+++.+..++.+     ...+..+.|.-. ++.+.+.+++.||+|++||++.......  +..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-----~~~~N~vrf~~~-ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-----PATTNGVRFISC-DSPHGVISCSSDGTVRLWDIRSQAESARISWTQ  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC-----CCcccceEEecC-CCCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence            3455555555 999999999988888764     444555666532 2333799999999999999988764433  344


Q ss_pred             CC-CceEEEEEeCCCCceEEEeeC----CCCEEEEecCCCee-EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117          127 HG-DSINEIRTQPLKPSLVVSASK----DESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  200 (346)
Q Consensus       127 ~~-~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  200 (346)
                      +. .+..+++.+. +.+.+++|..    +..|.+||++..+. +..+..  .|...|+++.|+|++.++|++|+.||.|.
T Consensus       115 ~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--SH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  115 QSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--SHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             CCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhh--hccCcceeEEecCCCCCeEEeecccceEE
Confidence            44 5677888776 6778888753    67899999998766 666554  69999999999999999999999999999


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC---CEEEEEeecCeEEEEcCCCCC
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      +||+.....                    ...+...-.|...|.++.|.+   +.+.+-+...+..+|+++.+.
T Consensus       192 lfD~~~d~E--------------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  192 LFDTKKDNE--------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             eeecCCCcc--------------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            999987311                    123334445667788888872   268888888889999887664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=2.7e-21  Score=163.40  Aligned_cols=245  Identities=17%  Similarity=0.245  Sum_probs=189.9

Q ss_pred             CceEEEEEEeecCC-CccEEEEEcCCc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           34 RPLYAVVFNFIDSR-YFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        34 ~~v~~~~~~p~~~~-~~~~la~~~~~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      .+|..++|.-.-.. ..+.++..-++. .+.|+..+... ...+..-..  ....+.+.+++.++-|+ +.+.|+..|.|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~--~~~~~~~~av~vs~CGN-F~~IG~S~G~I  472 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF--KKDDINATAVCVSFCGN-FVFIGYSKGTI  472 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc--cccCcceEEEEEeccCc-eEEEeccCCeE
Confidence            45666666531100 113344433333 99999876543 223321111  12334445555557788 99999999999


Q ss_pred             EEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          111 RVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       111 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      -+|++++|-....+   +.|.++|+.++... -++.+++++.+|.+++||......+..++    -...+.++..+. ..
T Consensus       473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~----l~~~~~~iv~hr-~s  546 (910)
T KOG1539|consen  473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR----LGSSITGIVYHR-VS  546 (910)
T ss_pred             EEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec----cCCCcceeeeee-hh
Confidence            99999999988888   58999999999988 77899999999999999999888888886    667888888886 77


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  265 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  265 (346)
                      .+++.+..|-.|+++|+.+                       ...++.+.+|.+.|+.++|+  |++|++++.|++|++|
T Consensus       547 ~l~a~~~ddf~I~vvD~~t-----------------------~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w  603 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVT-----------------------RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW  603 (910)
T ss_pred             hhhhhhcCceeEEEEEchh-----------------------hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence            8889999999999999998                       55677899999999999999  8999999999999999


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-CcEEEEEcCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-GKIFVWELQS  322 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-g~i~iwd~~~  322 (346)
                      |+.++.         ++..+.. ..+..++.|||+|  .+||+...| .-|++|.-.+
T Consensus       604 Dlpt~~---------lID~~~v-d~~~~sls~SPng--D~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  604 DLPTGT---------LIDGLLV-DSPCTSLSFSPNG--DFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eccCcc---------eeeeEec-CCcceeeEECCCC--CEEEEEEecCceEEEEEchh
Confidence            999987         4444433 3578899999999  799999988 6799997544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=6e-22  Score=145.91  Aligned_cols=250  Identities=15%  Similarity=0.184  Sum_probs=177.6

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      ..|++|.+.|+++.|-.     ..+|.+|..-| |.+|++.+......+..+    +...|+.+...  |++  .+.+-+
T Consensus         8 fvLRp~~~~v~s~~fqa-----~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~----g~~~it~lq~~--p~d--~l~tqg   74 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQA-----NERLMSGLSVGIVKMWVLQTERDLPLIRLF----GRLFITNLQSI--PND--SLDTQG   74 (323)
T ss_pred             eEeccccchheehhhcc-----chhhhcccccceEEEEEeecCccchhhhhh----ccceeeceeec--CCc--chhhcC
Confidence            34669999999999986     34588888777 999999988877666643    45556555554  554  588999


Q ss_pred             cCCeEEEEEccCccee---------------------------eeec--------------------------cCCCceE
Q 019117          106 INGIIRVIDVSNEKLH---------------------------KSFV--------------------------GHGDSIN  132 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~---------------------------~~~~--------------------------~~~~~v~  132 (346)
                      .|+.+.+|++.-+..+                           ..+.                          +..+.+.
T Consensus        75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM  154 (323)
T ss_pred             CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence            9999999998542110                           0000                          0123445


Q ss_pred             EEEEeCCCC--ceEEEeeCCCCEEEEecCCCeeEEEecc-------cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117          133 EIRTQPLKP--SLVVSASKDESVRLWNVQTGICILIFAG-------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       133 ~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  203 (346)
                      +..+.-..+  -++++|.++|.+.+||+.++..+..+..       ...|..+|.++.+.+ ....=++|+.+..+..|+
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeee
Confidence            554332222  2567888999999999998743333221       115889999999987 555567888888999998


Q ss_pred             ccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      +......+                  +.+. ........|..+...  ++.++++++|++||||+.++.+         +
T Consensus       234 l~~s~gsl------------------q~~~-e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---------p  285 (323)
T KOG0322|consen  234 LNHSTGSL------------------QIRK-EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---------P  285 (323)
T ss_pred             eccccCcc------------------cccc-eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---------c
Confidence            87621100                  1111 112222335545444  8899999999999999999987         7


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      +..++.|.+.|.+++|+|+.  .++|+++.|+.|.+|++
T Consensus       286 LAVLkyHsagvn~vAfspd~--~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLKYHSAGVNAVAFSPDC--ELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhhcceeEEEeCCCC--chhhhccCCceEEeeec
Confidence            88889999999999999997  69999999999999987

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=1.6e-20  Score=146.38  Aligned_cols=289  Identities=21%  Similarity=0.317  Sum_probs=191.0

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce------eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ...+|+.+.|.++   ....+|||+.|. |++|.+..+..      +..+..+  ..|...|+++.|+  |+|. +|++|
T Consensus        12 ~~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L--s~H~~aVN~vRf~--p~ge-lLASg   83 (434)
T KOG1009|consen   12 DHEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL--SRHTRAVNVVRFS--PDGE-LLASG   83 (434)
T ss_pred             CCCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeecc--cCCcceeEEEEEc--CCcC-eeeec
Confidence            3568999999983   234999999998 99999875432      2222222  3488899999887  9999 99999


Q ss_pred             ecCCeEEEEEcc--------C--------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117          105 GINGIIRVIDVS--------N--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus       105 ~~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      +.+|.|.+|-..        +        ....+.+.+|...|..++|+| ++.++++++-|..+++||+..|+.+..+.
T Consensus        84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeecc
Confidence            999999999865        2        123456678999999999999 99999999999999999999999999988


Q ss_pred             ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc----eE
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY----VD  244 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~  244 (346)
                         .|...+..++|.| -..++++-+.|...+.+.+...+....-.  ....+.......... ... -.|.+.    ..
T Consensus       163 ---dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~--~~~m~~~~~~~~e~~-s~r-LfhDeTlksFFr  234 (434)
T KOG1009|consen  163 ---DHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHG--LDIMPAKAFNEREGK-STR-LFHDETLKSFFR  234 (434)
T ss_pred             ---ccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeee--eeEeeecccCCCCcc-eee-eeecCchhhhhh
Confidence               7999999999999 88889999999877777665522111100  000000000000000 001 122222    23


Q ss_pred             EEEec--CCEEEEEee----c-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC------------
Q 019117          245 CNRWL--GDFILSKSV----D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF------------  301 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------  301 (346)
                      .++|.  |.++++...    .     ++.++|+-...+        .+...+.........+.|+|--            
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~  306 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL  306 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence            34454  556665432    1     233444443322        1444555555566666666521            


Q ss_pred             ---Cc-ceEEEEcCCCcEEEEEcCCCCcceeee--eeeeEEEEEecCCCCC
Q 019117          302 ---HY-NAAAIGNREGKIFVWELQSSPPVLIAR--LICFSLHVKYNPQSVY  346 (346)
Q Consensus       302 ---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~spdg~~  346 (346)
                         .+ ..+|.++ .+.|++||.++-.|.....  +-..++.++||+||.+
T Consensus       307 ~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~  356 (434)
T KOG1009|consen  307 FVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSV  356 (434)
T ss_pred             cccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcE
Confidence               01 2445555 4589999999987765432  2234789999999863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.3e-20  Score=142.69  Aligned_cols=282  Identities=13%  Similarity=0.138  Sum_probs=178.4

Q ss_pred             ccccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCC-cEEEEEeccCc---eeeeE---e
Q 019117            3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN-RVTVYQCLEGG---VIAAL---Q   75 (346)
Q Consensus         3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~-~v~i~~~~~~~---~~~~~---~   75 (346)
                      .++.+.....|.+.+-..++.+..+.- -.-+.-+.++|+|+   ...+++++-.+ .+++|...+.+   .....   .
T Consensus       103 t~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapD---c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D  178 (420)
T KOG2096|consen  103 TISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPD---CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHID  178 (420)
T ss_pred             EEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCC---cceEEEEEccCCEEEEEEeeecccCCCCccccccc
Confidence            344455566666665444444433321 11234678999992   22344444433 39999875322   11111   1


Q ss_pred             eeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEE
Q 019117           76 SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL  155 (346)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  155 (346)
                      .+. ......+..+.+-...+++ +|++++.|..|.+|+++ |+.+..+......-+..+.+| ++.++++++.---|++
T Consensus       179 ~~~-f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkV  254 (420)
T KOG2096|consen  179 NLE-FERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKV  254 (420)
T ss_pred             ccc-cchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceE
Confidence            000 0112233334444336677 99999999999999998 999998887777788999999 9999999999899999


Q ss_pred             EecC---CC-----eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          156 WNVQ---TG-----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       156 wd~~---~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                      |.+-   .|     ..+..++   +|...|..++|+| +...+++.+.||++++||+.-.-.....+....         
T Consensus       255 wE~~f~kdG~fqev~rvf~Lk---GH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk---------  321 (420)
T KOG2096|consen  255 WEPIFTKDGTFQEVKRVFSLK---GHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK---------  321 (420)
T ss_pred             EEEEeccCcchhhhhhhheec---cchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhh---------
Confidence            9873   22     2334455   8999999999998 899999999999999999876211100000000         


Q ss_pred             cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcce
Q 019117          228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  305 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  305 (346)
                      ....+   +......-..+..+  |+.|+. +....++++..++++.        .-.-...|...|.+++|+++|  ++
T Consensus       322 ~g~~p---l~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~--------~~~~e~~h~~~Is~is~~~~g--~~  387 (420)
T KOG2096|consen  322 EGSAP---LHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKD--------YPELEDIHSTTISSISYSSDG--KY  387 (420)
T ss_pred             cCCcc---hhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCcc--------chhHHHhhcCceeeEEecCCC--cE
Confidence            00000   00011111134444  555554 4456799999998763        112224578899999999999  78


Q ss_pred             EEEEcCCCcEEEEEc
Q 019117          306 AAIGNREGKIFVWEL  320 (346)
Q Consensus       306 l~~~~~dg~i~iwd~  320 (346)
                      +++++ |..++++.-
T Consensus       388 ~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  388 IATCG-DRYVRVIRN  401 (420)
T ss_pred             Eeeec-ceeeeeecC
Confidence            99887 567888763

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.6e-21  Score=149.74  Aligned_cols=286  Identities=12%  Similarity=0.130  Sum_probs=199.3

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc---eeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG---VIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      +.+.+.+|.+.|+++.|+.    ++++||+|++|. +++|+....-   ..+.+.. ....|...|.+++|.  ..++ +
T Consensus        48 ~qKD~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~--~~N~-~  119 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFD--LENR-F  119 (609)
T ss_pred             hhhhhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEc--cCCe-e
Confidence            3445689999999999998    689999999998 9999976321   1122221 223366788888775  6666 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcce
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEV  177 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v  177 (346)
                      +++|..+++|...|+.+.+.+..+..  ..+.|..+..+| ..+.|++.+.++.|.+||.+... .+..+- ........
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F  197 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNF  197 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccc
Confidence            99999999999999999888776652  234899999999 68899999999999999998765 332222 11356778


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeee---------------ceeecCCCCCCCCcccee-----------
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK---------------SFTWTDLPSKFPTKYVQF-----------  231 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-----------  231 (346)
                      ..+.|+|....+|++.+..+-+.+||.+.....+..               ...|......+.......           
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            899999977899999999999999999984332211               111221111111111111           


Q ss_pred             -ceEEEee------cccceEEEEecC-CEEEEEeecCeEEEEcCCCCCCCCC--------------CccccccccccCCC
Q 019117          232 -PVFIASV------HSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMKEQSPG--------------EGTADILQKYPVPE  289 (346)
Q Consensus       232 -~~~~~~~------~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~  289 (346)
                       ++.....      ....+.+++|.+ .-+++|+.+-.|.+|.+........              .-....+..+++|.
T Consensus       278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR  357 (609)
T KOG4227|consen  278 CFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR  357 (609)
T ss_pred             ceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc
Confidence             1111111      112356677774 4588999999999999864332111              01122355678899


Q ss_pred             cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       290 ~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .-+..+.|+|..  .+|++.+-.+.++||.-..
T Consensus       358 Sv~NQVRF~~H~--~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  358 SVPNQVRFSQHN--NLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             ccccceeecCCc--ceEeccchhhheecccccc
Confidence            999999999998  6888999999999997554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.1e-20  Score=146.88  Aligned_cols=207  Identities=19%  Similarity=0.342  Sum_probs=157.7

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV  153 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  153 (346)
                      +|...|..+.|++.  +.+.||+|+.|.+|.||.+-.+       +++..+.+|...|.-++|+|.-.+.|++++.|.+|
T Consensus        79 GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             CccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            48889999999954  4448999999999999998543       45678889999999999999888999999999999


Q ss_pred             EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      .+||+.+++.+..+.    |...|.++.|+. +|.++++.+.|..|+|||.+..                       ..+
T Consensus       157 ~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-----------------------~~v  208 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-----------------------TVV  208 (472)
T ss_pred             EEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-----------------------cEe
Confidence            999999999999886    999999999997 9999999999999999999983                       334


Q ss_pred             EEEeecccc--eEEEEec-CCEEEEEe----ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceE
Q 019117          234 FIASVHSNY--VDCNRWL-GDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  306 (346)
Q Consensus       234 ~~~~~~~~~--i~~~~~~-~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  306 (346)
                      .....|.+.  ...+-.. +. +++.+    .+..+-+||....+.      .-.+..+.... .|.-=-|.+|.. -+.
T Consensus       209 ~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------P~~~~elDtSn-Gvl~PFyD~dt~-ivY  279 (472)
T KOG0303|consen  209 SEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------PIALQELDTSN-GVLLPFYDPDTS-IVY  279 (472)
T ss_pred             eecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------cceeEEeccCC-ceEEeeecCCCC-EEE
Confidence            444455543  2333333 55 44443    367899999887652      11333443333 333333566663 355


Q ss_pred             EEEcCCCcEEEEEcCCCCcc
Q 019117          307 AIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       307 ~~~~~dg~i~iwd~~~~~~~  326 (346)
                      ++|-.|+.|+.|.+....+.
T Consensus       280 l~GKGD~~IRYyEit~d~P~  299 (472)
T KOG0303|consen  280 LCGKGDSSIRYFEITNEPPF  299 (472)
T ss_pred             EEecCCcceEEEEecCCCce
Confidence            66778999999999887653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=1e-20  Score=156.72  Aligned_cols=257  Identities=14%  Similarity=0.214  Sum_probs=195.6

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      .|+.++|.|    ||..|+.+.++.+.+||..+|..+.+++.     |.+.|++++|+  .||+ .+++|+.|..|.+|.
T Consensus        14 ci~d~afkP----DGsqL~lAAg~rlliyD~ndG~llqtLKg-----HKDtVycVAys--~dGk-rFASG~aDK~VI~W~   81 (1081)
T KOG1538|consen   14 CINDIAFKP----DGTQLILAAGSRLLVYDTSDGTLLQPLKG-----HKDTVYCVAYA--KDGK-RFASGSADKSVIIWT   81 (1081)
T ss_pred             chheeEECC----CCceEEEecCCEEEEEeCCCccccccccc-----ccceEEEEEEc--cCCc-eeccCCCceeEEEec
Confidence            799999999    78888888899999999999999999886     88899999998  8999 999999999999998


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      ..-.- +..+ .|++.|.|+.|+| -...|++++-. ..-+|..... .+...+    ....+.+++|.. +|.+++.|-
T Consensus        82 ~klEG-~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK-~V~K~k----ss~R~~~CsWtn-DGqylalG~  151 (1081)
T KOG1538|consen   82 SKLEG-ILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK-SVSKHK----SSSRIICCSWTN-DGQYLALGM  151 (1081)
T ss_pred             ccccc-eeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh-hHHhhh----hheeEEEeeecC-CCcEEEEec
Confidence            54322 2233 3999999999999 78889988763 4678887543 333333    456888999996 999999999


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-------CCEEEEEeecCeEEEEcC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~iwd~  267 (346)
                      .+|+|.+=+-....                     ...+....+...+|.+++|+       .+.+++..+..++.++.+
T Consensus       152 ~nGTIsiRNk~gEe---------------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L  210 (1081)
T KOG1538|consen  152 FNGTISIRNKNGEE---------------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL  210 (1081)
T ss_pred             cCceEEeecCCCCc---------------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence            99999886433210                     11222334467789999997       248999999999999998


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ....          +..-..-.-...++.+.++|  .+++.|+.|+.+++|.-+.-..-........++.++..|+|++
T Consensus       211 sG~~----------Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  211 SGKQ----------IGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             ccee----------ecccccCCCCchhheeccCC--cEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCce
Confidence            7543          22122222345678899999  6899999999999997544322223345566889999999875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=1.8e-20  Score=145.73  Aligned_cols=212  Identities=16%  Similarity=0.154  Sum_probs=157.2

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEe--eeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ--SYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      .+.||+++|.+++|+|.   +...+|+|++|. |.||.+-.+.....+.  ......|...|..+.|.  |...+.|+++
T Consensus        76 ~v~GHt~~vLDi~w~Pf---nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wH--PtA~NVLlsa  150 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF---NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWH--PTAPNVLLSA  150 (472)
T ss_pred             CccCccccccccccCcc---CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeec--ccchhhHhhc
Confidence            35899999999999994   468999999999 9999987665443332  11123488899999998  6555689999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc-ceEEEEec
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-EVLSVDFH  183 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~  183 (346)
                      +.|.+|.+|++.+++.+.++. |.+.|.++.|+- ++.+|++.+.|..|+|||.++++.+..-.   +|.+ .-..+.|-
T Consensus       151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl  225 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFL  225 (472)
T ss_pred             cCCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEe
Confidence            999999999999999888888 999999999999 99999999999999999999999998876   5654 23344455


Q ss_pred             CCCCcEEEEE---ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-EEEEEe
Q 019117          184 PSDIYRIASC---GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKS  257 (346)
Q Consensus       184 ~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~  257 (346)
                      . ++.++-||   ..+..+-+||..+....                    .....+. ..+.|.-=-|+  .. ..++|-
T Consensus       226 ~-~g~i~tTGfsr~seRq~aLwdp~nl~eP--------------------~~~~elD-tSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  226 A-SGKIFTTGFSRMSERQIALWDPNNLEEP--------------------IALQELD-TSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             c-cCceeeeccccccccceeccCcccccCc--------------------ceeEEec-cCCceEEeeecCCCCEEEEEec
Confidence            4 66644444   23678999999884321                    1111222 12233333333  23 445666


Q ss_pred             ecCeEEEEcCCCCC
Q 019117          258 VDNEIVLWEPKMKE  271 (346)
Q Consensus       258 ~d~~i~iwd~~~~~  271 (346)
                      .|+.||.|.+....
T Consensus       284 GD~~IRYyEit~d~  297 (472)
T KOG0303|consen  284 GDSSIRYFEITNEP  297 (472)
T ss_pred             CCcceEEEEecCCC
Confidence            79999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3e-21  Score=156.42  Aligned_cols=267  Identities=16%  Similarity=0.201  Sum_probs=185.3

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-----CceeeeEeeeecCCCccceEEEEEEEc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-----GGVIAALQSYVDEDKEESFYTVSWACN   94 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~   94 (346)
                      +.|.+..++..|.+.|++++|+|    ....|++++.++ +.+|++.+     ...+..+..|  ..|.++|.|+++.  
T Consensus       282 k~w~ik~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf--raH~gPVl~v~v~--  353 (577)
T KOG0642|consen  282 KKWNIKFTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF--RAHEGPVLCVVVP--  353 (577)
T ss_pred             eecceeeeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEE--ecccCceEEEEec--
Confidence            34666668889999999999999    567999999999 99999932     2223333333  3588999888776  


Q ss_pred             CCCCcEEEEeecCCeEEEEEccCc----------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      .++. .+++|+.||+|+.|++...          .....+.||.+.|+.+++++ ....|++++.||++++|+.....+ 
T Consensus       354 ~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  354 SNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             CCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-
Confidence            7787 9999999999999965311          23456789999999999999 788899999999999999876655 


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      .++... ...+...++.+-.......++...-+.-.++++...+..........                ........+.
T Consensus       431 ~~f~~~-~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~----------------~~~~~~~~in  493 (577)
T KOG0642|consen  431 CTFGEP-KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS----------------PGPRRYPQIN  493 (577)
T ss_pred             cccCCc-cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC----------------CcccccCccc
Confidence            444422 12344566766531212233332223333333333111111000000                0000011122


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      -+.++  ..+.+++..|+.|+++|..+++         ++.....|...++++++.|+|  .+|++++.|+.+++|.+..
T Consensus       494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---------~l~s~~a~~~svtslai~~ng--~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  494 KVVSHPTADITFTAHEDRSIRFFDNKTGK---------ILHSMVAHKDSVTSLAIDPNG--PYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             eEEecCCCCeeEecccCCceecccccccc---------cchheeeccceecceeecCCC--ceEEeecCCceeehhhccc
Confidence            33333  6789999999999999999987         788888899999999999999  7999999999999999876


Q ss_pred             CCcc
Q 019117          323 SPPV  326 (346)
Q Consensus       323 ~~~~  326 (346)
                      ...+
T Consensus       563 k~~~  566 (577)
T KOG0642|consen  563 KTCV  566 (577)
T ss_pred             hhee
Confidence            5443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.87  E-value=6.4e-21  Score=153.91  Aligned_cols=253  Identities=12%  Similarity=0.196  Sum_probs=178.9

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEe---eeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQ---SYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      .|...|.|+.|+.    +...+.+++++.+.+|+-........+.   .+.+..  ..+...+-.- ..+...|+.++.|
T Consensus        12 r~~e~vc~v~w~~----~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~--~h~~~rs~~~-g~~~d~~~i~s~D   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS----NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTD--MHLGGRSSGG-GKGSDTLLICSND   84 (737)
T ss_pred             ccceeEEeecccc----cceEEEeccCceEEEeecccchhhhhhhCCcccCCcc--ccccccccCC-CCCcceEEEEcCC
Confidence            4667778999987    5677777777776666655443333222   111110  0000011000 1122378888999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.+.+.+ +.++..+.+..|.+.+.+-.|+| ++.-|+++++||.|++|. ++|-...++.   ....+|+|++|.|+..
T Consensus        85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~---Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen   85 GRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVV---QNEESIRCARWAPNSN  158 (737)
T ss_pred             ceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHh---hcCceeEEEEECCCCC
Confidence            9999988 67888888999999999999999 899999999999999998 4565555555   4678999999999556


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  265 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  265 (346)
                      +.+++.+  +.+.|=.+..                       +..+.....|.+-|.++.|+  .+++++|++|-..++|
T Consensus       159 ~vl~c~g--~h~~IKpL~~-----------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvW  213 (737)
T KOG1524|consen  159 SIVFCQG--GHISIKPLAA-----------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIW  213 (737)
T ss_pred             ceEEecC--CeEEEeeccc-----------------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEee
Confidence            6666554  4555544443                       33566788899999999999  8899999999999999


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      |....          .+..-..|+.+|++++|.|+.   .++.++. +.+++          ...-.+.+..++|||||.
T Consensus       214 D~~G~----------~Lf~S~~~ey~ITSva~npd~---~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGT  269 (737)
T KOG1524|consen  214 DAQGA----------NLFTSAAEEYAITSVAFNPEK---DYLLWSY-NTARF----------SSPRVGSIFNLSWSADGT  269 (737)
T ss_pred             cccCc----------ccccCChhccceeeeeecccc---ceeeeee-eeeee----------cCCCccceEEEEEcCCCc
Confidence            98653          566677788999999999994   4555554 24441          112235578899999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.3e-19  Score=129.56  Aligned_cols=244  Identities=14%  Similarity=0.192  Sum_probs=166.3

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce---eeeEeeeecC-----CCccceEEEEEEEcCCC
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV---IAALQSYVDE-----DKEESFYTVSWACNVDG   97 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~---~~~~~~~~~~-----~~~~~v~~~~~~~~~~~   97 (346)
                      ....++|.++|+.++|.-      .+|++|+++.|+-|...+...   .+.+-....+     ..-..|.++.+.  |..
T Consensus        55 iv~eqahdgpiy~~~f~d------~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld--P~e  126 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFHD------DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD--PSE  126 (325)
T ss_pred             eeeccccCCCeeeeeeeh------hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec--cCC
Confidence            334589999999999984      788888886699988764332   1111111111     122345556555  555


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC------
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG------  171 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------  171 (346)
                      + .++.++.|+.++-||+++|+..+++++|++.|.++.--. ....+++|++||++++||.++++.+..+....      
T Consensus       127 n-Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR  204 (325)
T KOG0649|consen  127 N-SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR  204 (325)
T ss_pred             C-cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence            5 455555799999999999999999999999999999865 66789999999999999999999988776421      


Q ss_pred             C-CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC
Q 019117          172 G-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG  250 (346)
Q Consensus       172 ~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  250 (346)
                      . -...|.+++.   +..++++|+ ...+.+|.++....                     ..++.   -+..+..+.|..
T Consensus       205 p~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~---------------------t~vfp---ipa~v~~v~F~~  256 (325)
T KOG0649|consen  205 PDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSES---------------------TCVFP---IPARVHLVDFVD  256 (325)
T ss_pred             cccCceeEEEec---cCceEEecC-CCceeEEeccCCCc---------------------eEEEe---cccceeEeeeec
Confidence            1 2345777775   456777665 46899999998321                     12222   355677788888


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      +.+++++..+.|.-|.+..--          -...+......++..|+...- +++..++..+.+.|+
T Consensus       257 d~vl~~G~g~~v~~~~l~Gvl----------~a~ip~~s~~c~s~s~~~~p~-k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  257 DCVLIGGEGNHVQSYTLNGVL----------QANIPVESTACYSASWQTSPI-KFISIAGFSNKLHIL  313 (325)
T ss_pred             ceEEEeccccceeeeeeccEE----------EEeccCCccceeeecccCCce-EEEEecccceeeeee
Confidence            999999999999999886521          111222222333444443332 466666777777765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=8.3e-19  Score=135.44  Aligned_cols=238  Identities=12%  Similarity=0.160  Sum_probs=181.8

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC--CeE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN--GII  110 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i  110 (346)
                      ...+..+.|+.    +...|..|+.+|-++|+...-...     +  ....+.+..+...|+..   ++|..+.+  ..+
T Consensus         5 ~~ti~~~~~Nq----d~~~lsvGs~~Gyk~~~~~~~~k~-----~--~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~L   70 (391)
T KOG2110|consen    5 KPTINFIGFNQ----DSTLLSVGSKDGYKIFSCSPFEKC-----F--SKDTEGVSIVEMLFSSS---LVAIVSIKQPRKL   70 (391)
T ss_pred             Ccceeeeeecc----ceeEEEccCCCceeEEecCchHHh-----h--cccCCCeEEEEeecccc---eeEEEecCCCceE
Confidence            34566777887    778999999999999997654441     1  11334555566666533   66666554  459


Q ss_pred             EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      ++++++.+..+..+. ...+|.+|.++.   +.|+++-++ .|.|||+++.+.+.++.....+...+.++++++ ++.++
T Consensus        71 kv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~yl  144 (391)
T KOG2110|consen   71 KVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYL  144 (391)
T ss_pred             EEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceE
Confidence            999999888887776 567899999975   566666654 499999999999999986545666677777775 55566


Q ss_pred             EEE--ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe-EEEE
Q 019117          191 ASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-IVLW  265 (346)
Q Consensus       191 ~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~-i~iw  265 (346)
                      +--  ...|.|.+||+.+                       -.++..+..|.+.+.+++|+  |.+||+++..|+ |||+
T Consensus       145 Ayp~s~t~GdV~l~d~~n-----------------------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTIN-----------------------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             EecCCCCCceEEEEEccc-----------------------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            543  3368899999998                       45678889999999999999  999999999887 7999


Q ss_pred             cCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      .+.+++         .+.++...  ...|.+++|+||+  .+|++.|..++|++|.++.-.
T Consensus       202 ~v~~G~---------kl~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  202 SVPEGQ---------KLYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EcCCcc---------EeeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEEEecccc
Confidence            998887         44444432  3578999999999  699999999999999997643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.7e-20  Score=143.12  Aligned_cols=199  Identities=20%  Similarity=0.254  Sum_probs=157.4

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      .+|++..+|.|++||..+++.+..++++...++.++|... .+..+.+++.||+|++||++.......+...+....+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            7888889999999999999999999999999999999874 567899999999999999998776665553222235677


Q ss_pred             EEEecCCCCcEEEEEec----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CC
Q 019117          179 SVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GD  251 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~  251 (346)
                      +++..- .+..+++|+.    +-.|.+||+|..+..                     .-.-...|.+.|+++.|+   ++
T Consensus       122 ~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------l~~~~eSH~DDVT~lrFHP~~pn  179 (376)
T KOG1188|consen  122 CLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQL---------------------LRQLNESHNDDVTQLRFHPSDPN  179 (376)
T ss_pred             EeeccC-cCCeEEeccccccCceEEEEEEeccccch---------------------hhhhhhhccCcceeEEecCCCCC
Confidence            777764 6677777743    568999999983310                     112345799999999998   78


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      +|++|+.||.|.+||++...      ....+...-.+...|..+.|..++. +.+.+-+..+...+|+++.+....
T Consensus       180 lLlSGSvDGLvnlfD~~~d~------EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  180 LLLSGSVDGLVNLFDTKKDN------EEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             eEEeecccceEEeeecCCCc------chhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhh
Confidence            99999999999999998763      2224444445677899999998875 568888889999999999987443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.8e-19  Score=131.59  Aligned_cols=219  Identities=15%  Similarity=0.093  Sum_probs=159.0

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCc----------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      -+++  |.++ +|++|+.+|.|.+..+++.          ..+...++|.++|+.++|..   .+|++|+. |.|+-|..
T Consensus        16 qa~s--p~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   16 QAIS--PSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HhhC--Ccce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeee
Confidence            4455  8888 9999999999999988541          23455688999999999974   67888774 99999987


Q ss_pred             CCCee------EEEecccC----CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117          159 QTGIC------ILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  228 (346)
Q Consensus       159 ~~~~~------~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
                      +....      +...+.+.    ..-..|+++...| ..+-++.++.|+.++.||+++                      
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~----------------------  145 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLED----------------------  145 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecC----------------------
Confidence            64322      11211110    1224689999999 445566666899999999999                      


Q ss_pred             ceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcce
Q 019117          229 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNA  305 (346)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~  305 (346)
                       +...+.+.+|++.|.++.-.  ...+++|++||++|+||.++.+.....+..+....+..|. ..|.+++-+.    .+
T Consensus       146 -G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e----dW  220 (325)
T KOG0649|consen  146 -GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE----DW  220 (325)
T ss_pred             -CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC----ce
Confidence             44567899999999999884  6689999999999999999998543333222222222222 3455555443    46


Q ss_pred             EEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          306 AAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       306 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      |++|+. ..+.+|++...++..++.+++++..+.|--|
T Consensus       221 lvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  221 LVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             EEecCC-CceeEEeccCCCceEEEecccceeEeeeecc
Confidence            877664 5799999999999999999998887777544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.7e-19  Score=156.63  Aligned_cols=273  Identities=14%  Similarity=0.158  Sum_probs=190.2

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEc-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      +...+-..+.|+|    ....++++. .+.|.+||...++.+..+....  .....|..+.+.-..|.. ++++|+.||.
T Consensus      1062 ~n~~~pk~~~~hp----f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~a-LlLtas~dGv 1134 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHP----FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDA-LLLTASSDGV 1134 (1387)
T ss_pred             cCCCCCceeeecC----CCceeEEcCCcceEEEEecccCceeccccCCC--CCCCccceeeeecccchh-heeeeccCce
Confidence            3334566788998    556777776 4449999999988866655432  255778888887555666 9999999999


Q ss_pred             EEEEEcc-----Ccceeeeecc-------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          110 IRVIDVS-----NEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       110 i~iwd~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      |+||+--     +.+.+....+       ..+.-.-+.|.. ...+|+++++-..|+|||....+.+..+..  +....|
T Consensus      1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~v 1211 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLV 1211 (1387)
T ss_pred             EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeeccc--CCCccc
Confidence            9999742     2233322221       122224567877 445566666678999999998877777653  456678


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc--eEEEEec--CC-E
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--GD-F  252 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~--~~-~  252 (346)
                      +++.-+-..++.++.|..||.|++||.+....                    ...+.....|++.  |..+.+.  |- .
T Consensus      1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------ds~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------DSLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred             eeecccccCCceEEEeecCCceEEeecccCCc--------------------cccceeecccCCcccceeEEeecCCCcc
Confidence            88877655689999999999999999998321                    2345566778777  8888887  32 5


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC--c-CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--C-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      |++|+.||.|++||++.....       .......|.  + ..+++..+++.  .++|+|+. +.|+||++.....-...
T Consensus      1272 lvSgs~~G~I~~~DlR~~~~e-------~~~~iv~~~~yGs~lTal~VH~ha--piiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKE-------TFLTIVAHWEYGSALTALTVHEHA--PIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             eeeeccCCeEEEEecccCccc-------ccceeeeccccCccceeeeeccCC--CeeeecCc-ceEEEEecChhhhcccc
Confidence            999999999999999984210       111111121  3 58999999988  78999998 99999999765432222


Q ss_pred             e-------eeeeEEEEEecCC
Q 019117          330 R-------LICFSLHVKYNPQ  343 (346)
Q Consensus       330 ~-------~~~~~~~~~~spd  343 (346)
                      .       -.+.+.+++|+|-
T Consensus      1342 ~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             cCcccccCcCCCcceeeecch
Confidence            1       2234678999884

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=4.6e-18  Score=146.38  Aligned_cols=265  Identities=23%  Similarity=0.406  Sum_probs=199.9

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe-
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-  104 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-  104 (346)
                      .+..|...+.++.|.+    .+..++.++.++ +.+|+..... ....+...    +...+..+.+. .+++..+++.. 
T Consensus        60 ~~~~~~~~i~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~  130 (466)
T COG2319          60 LLRGHEDSITSIAFSP----DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL----HDSSVSKLALS-SPDGNSILLASS  130 (466)
T ss_pred             eeeeccceEEEEEECC----CCcEEEEecCCCcEEEEEcCCCceeEEEEecc----CCCceeeEEEE-CCCcceEEeccC
Confidence            4578999999999998    678888888666 9999988776 44444432    11356666665 67776344443 


Q ss_pred             ecCCeEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          105 GINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       105 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      ..|+.+.+|+... ......+..|...|..++|+| ++..+++++. |+.+++|++..+..+..+.   +|...|.+++|
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~  206 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLA---GHTDPVSSLAF  206 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeec---cCCCceEEEEE
Confidence            4499999999988 778888899999999999999 7778888885 9999999999888888888   69999999999


Q ss_pred             cCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE-EEeecccceEEEEec--CCEEEEEee
Q 019117          183 HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       183 ~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      +| ++. .+++++.|+.|++||....                       .... .+..|.... ...|+  +.++++++.
T Consensus       207 ~~-~~~~~~~~~~~d~~i~~wd~~~~-----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  261 (466)
T COG2319         207 SP-DGGLLIASGSSDGTIRLWDLSTG-----------------------KLLRSTLSGHSDSV-VSSFSPDGSLLASGSS  261 (466)
T ss_pred             cC-CcceEEEEecCCCcEEEEECCCC-----------------------cEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence            98 665 5666699999999977741                       2222 455666653 22455  668889999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee---eeeeE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR---LICFS  335 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~  335 (346)
                      |+.+++|+......        .+..+..|...+.++.|.|++  ..+++++.|+.+.+|++.+........   ....+
T Consensus       262 d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
T COG2319         262 DGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG--KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV  331 (466)
T ss_pred             CCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence            99999999987652        122225667899999999977  567778888999999988876544433   22235


Q ss_pred             EEEEe
Q 019117          336 LHVKY  340 (346)
Q Consensus       336 ~~~~~  340 (346)
                      ..+.|
T Consensus       332 ~~~~~  336 (466)
T COG2319         332 SSLSF  336 (466)
T ss_pred             EEEEE
Confidence            66777

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=152.50  Aligned_cols=178  Identities=17%  Similarity=0.302  Sum_probs=145.4

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .+.+.+.+.|.||++.|+|++|+.    +|.+|++|++|. +.|||...-+.+..+..    .|...|.++.|.+..+++
T Consensus        37 lrrL~lE~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnr  108 (758)
T KOG1310|consen   37 LRRLDLEAELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNR  108 (758)
T ss_pred             HhhcchhhhhccccceecceeecC----CCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCe
Confidence            355677788999999999999998    899999999998 99999987777777664    588999999999766677


Q ss_pred             cEEEEeecCCeEEEEEccC----------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-----
Q 019117           99 PFLVAGGINGIIRVIDVSN----------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-----  163 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----  163 (346)
                       ++++|..|..|+++|+..          .+....+..|...|..++-.|.+++.+.++++||+|+-+|++....     
T Consensus       109 -iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~  187 (758)
T KOG1310|consen  109 -IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE  187 (758)
T ss_pred             -EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence             999999999999999974          2345566779999999999997779999999999999999985321     


Q ss_pred             --EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          164 --ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       164 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                        ...+......--...++..+|.+..+|+.|+.|-..++||.+.
T Consensus       188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence              1111110012245679999998899999999999999999766

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=4e-19  Score=138.71  Aligned_cols=260  Identities=16%  Similarity=0.168  Sum_probs=180.4

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec--------c-----CceeeeEeeeecCCCccceE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--------E-----GGVIAALQSYVDEDKEESFY   87 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~--------~-----~~~~~~~~~~~~~~~~~~v~   87 (346)
                      ..+.+..|..|...|+++.|+|    +|++||+|++++ |.+|-..        +     .+.......  ...|.+.++
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p----~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~--lr~h~~diy  127 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSP----DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKV--LRGHRDDIY  127 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcC----CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEE--ecccccchh
Confidence            5677788899999999999999    899999999999 9999765        1     111111111  123788999


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      .++|+  |++. ++++++.|..+++||+..|+....+..|...|..++|.| -.+++++-+.|...+.+.+...+.+...
T Consensus       128 dL~Ws--~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~  203 (434)
T KOG1009|consen  128 DLAWS--PDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRH  203 (434)
T ss_pred             hhhcc--CCCc-eeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeee
Confidence            99998  8898 999999999999999999999999999999999999999 8899999999988777777644433322


Q ss_pred             cc-----cCC-----------C----CcceEEEEecCCCCcEEEEEec----CCeE-----EEEEccccceeeeeceeec
Q 019117          168 AG-----AGG-----------H----RNEVLSVDFHPSDIYRIASCGM----DNTV-----KIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       168 ~~-----~~~-----------~----~~~v~~~~~~~~~~~~l~s~~~----d~~i-----~iwd~~~~~~~~~~~~~~~  218 (346)
                      ..     ...           |    ..-.+.++|+| ++.++++...    ++.+     ++|+-..            
T Consensus       204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~------------  270 (434)
T KOG1009|consen  204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKD------------  270 (434)
T ss_pred             eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeecccc------------
Confidence            20     000           1    12245678898 8888887642    1222     2222111            


Q ss_pred             CCCCCCCCccceeceEEEeecccceEEEEe-----------------c---CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRW-----------------L---GDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                                ...|...+..-......+.+                 .   +..++.++. +.|.+||.++..+      
T Consensus       271 ----------l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P------  333 (434)
T KOG1009|consen  271 ----------LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP------  333 (434)
T ss_pred             ----------ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc------
Confidence                      11222222222222222211                 1   334555554 5799999988662      


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                        ....-..|-..|+.++|++||  .+|+..|.||...+-.++..++
T Consensus       334 --~~~v~nihy~~iTDiaws~dg--~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  334 --LAVVDNIHYSAITDIAWSDDG--SVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             --eEEEeeeeeeeecceeecCCC--cEEEEeccCCceEEEEEcchhc
Confidence              122223367799999999999  7999999999998888887664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=9.3e-20  Score=151.12  Aligned_cols=248  Identities=14%  Similarity=0.170  Sum_probs=185.3

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ....+.++|++|++.|+|++|+.    +|++||+|+.|. |.+|+..-...+   +    ..|++.|.|+.|.  |-.. 
T Consensus        41 ndG~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~klEG~L---k----YSH~D~IQCMsFN--P~~h-  106 (1081)
T KOG1538|consen   41 SDGTLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKLEGIL---K----YSHNDAIQCMSFN--PITH-  106 (1081)
T ss_pred             CCcccccccccccceEEEEEEcc----CCceeccCCCceeEEEeccccccee---e----eccCCeeeEeecC--chHH-
Confidence            34567788999999999999998    899999999999 888985433322   2    2388999888776  7666 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      .|++++-+ ..-+|..+... +...+ ....+.+++|.. ++++|+.|-.+|+|.+-+- +++....+..+++..++|.+
T Consensus       107 ~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiws  181 (1081)
T KOG1538|consen  107 QLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWS  181 (1081)
T ss_pred             Hhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceE
Confidence            88888754 46788865433 22222 345788999998 9999999999999999864 56666677767788999999


Q ss_pred             EEecCCCC----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117          180 VDFHPSDI----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  253 (346)
Q Consensus       180 ~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  253 (346)
                      ++|+|..+    ..++......++.+|.+.......                     ...+   .-.-.|+.+.  |.++
T Consensus       182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk---------------------~r~L---~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK---------------------DRAL---NFDPCCISYFTNGEYI  237 (1081)
T ss_pred             EEecCCCCCCccceEEEEeccceeEEEEecceeecc---------------------cccC---CCCchhheeccCCcEE
Confidence            99999433    567777777788888776511100                     0111   1122355554  9999


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +.|+.|+.+++|--+.-          .+.+......+|+.++..|++  ..++.|+.||+|..|++...
T Consensus       238 LiGGsdk~L~~fTR~Gv----------rLGTvg~~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFTRDGV----------RLGTVGEQDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             EEccCCCceEEEeecCe----------EEeeccccceeEEEEEEccCC--ceEEEEEccCeeehhhhHHh
Confidence            99999999999975532          345555567799999999999  68999999999999998654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=9e-19  Score=148.48  Aligned_cols=252  Identities=15%  Similarity=0.130  Sum_probs=177.1

Q ss_pred             EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--ee----eeccCCCceE
Q 019117           60 VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HK----SFVGHGDSIN  132 (346)
Q Consensus        60 v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~  132 (346)
                      +.+|++...... ..+.      ....|.++.|+  |...++++.|..+|.|.+||+..+..  ..    ....|..+++
T Consensus       224 ~~vW~~~~p~~Pe~~~~------~~s~v~~~~f~--p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLE------SPSEVTCLKFC--PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT  295 (555)
T ss_pred             EEEEecCCCCCceEEEe------cCCceeEEEec--cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence            889998765222 2222      45677777777  66665999999999999999987654  22    2245899999


Q ss_pred             EEEEeCCCCce--EEEeeCCCCEEEEecCCCeeEE---Eeccc------CCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          133 EIRTQPLKPSL--VVSASKDESVRLWNVQTGICIL---IFAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       133 ~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~---~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                      .+.|.. +..-  |++++.||.|+.|+++.-....   .....      ......+++++|.+.+...++.|+.+|.|.-
T Consensus       296 ~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  296 AVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            999987 4444  9999999999999887432211   11100      0123468899999988899999999999887


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      -+-........               ...........|.+.|.++.++   ...+++++ |.+++||......       
T Consensus       375 ~~r~g~~~~~~---------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-------  431 (555)
T KOG1587|consen  375 GCRKGYTPAPE---------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-------  431 (555)
T ss_pred             EeccCCccccc---------------ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-------
Confidence            44433221111               1122344667799999999998   45566666 9999999988332       


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc--ceeeeeee-eEEEEEecCCCC
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLIC-FSLHVKYNPQSV  345 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~~~~~~~spdg~  345 (346)
                       .++..+..+...+++++|||-.. .+++++..||.|.+||+.....  +....... ..+.+.|+++|+
T Consensus       432 -~Pl~~~~~~~~~v~~vaWSptrp-avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~  499 (555)
T KOG1587|consen  432 -SPLLSLDSSPDYVTDVAWSPTRP-AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK  499 (555)
T ss_pred             -CcchhhhhccceeeeeEEcCcCc-eEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc
Confidence             15666666677799999999876 6999999999999999987553  33333333 245688888876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.9e-20  Score=148.35  Aligned_cols=284  Identities=15%  Similarity=0.244  Sum_probs=212.3

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      +.+.+...|..|.+.|..|.|+.    .|..|+++++|. |.+||+..+.....+..    .|...|..-.|.+..+.. 
T Consensus       130 qr~~l~~kL~~H~GcVntV~FN~----~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----GH~~NvfQaKFiP~s~d~-  200 (559)
T KOG1334|consen  130 QRLRLQKKLNKHKGCVNTVHFNQ----RGDVLASGSDDLQVVVWDWVSGSPKLSFES----GHCNNVFQAKFIPFSGDR-  200 (559)
T ss_pred             HHhhhhhcccCCCCccceeeecc----cCceeeccCccceEEeehhhccCccccccc----ccccchhhhhccCCCCCc-
Confidence            46677888999999999999998    899999999999 99999998887665553    477777777777554555 


Q ss_pred             EEEEeecCCeEEEEEccCcc-e--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc-
Q 019117          100 FLVAGGINGIIRVIDVSNEK-L--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-  175 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-  175 (346)
                      -+++++.||.+++=.+.... +  ...+..|.++|..++.-|....-|.+++.|+.+.-+|++.+.+...+.....+.. 
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            79999999999988764332 2  3455669999999999998889999999999999999998766555543333444 


Q ss_pred             --ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeec--------------------eeecCCCCC----------
Q 019117          176 --EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS--------------------FTWTDLPSK----------  223 (346)
Q Consensus       176 --~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~~~~~----------  223 (346)
                        ....++.+|.+.+.+++++.|..+++||.+.........                    ..+...++.          
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I  360 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI  360 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence              568899999778899999999999999998844431110                    000000000          


Q ss_pred             -------------CCCccc-eeceEEEeeccc--ceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117          224 -------------FPTKYV-QFPVFIASVHSN--YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK  284 (346)
Q Consensus       224 -------------~~~~~~-~~~~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  284 (346)
                                   .+.... +.....+++|.+  .|..+.|-   .+++++|+.-|.|.||+-.+++         .++-
T Consensus       361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e---------ii~~  431 (559)
T KOG1334|consen  361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE---------IIRF  431 (559)
T ss_pred             EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH---------HHHH
Confidence                         000000 011112555654  47777777   4799999999999999999887         6777


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +.+...-|.||.-+|.-  .+||+++-|..|+||.-.+.+
T Consensus       432 MegDr~VVNCLEpHP~~--PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  432 MEGDRHVVNCLEPHPHL--PVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             hhcccceEeccCCCCCC--chhhccCCccceeeecCCccc
Confidence            77777789999988887  799999999999999875544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=2e-20  Score=148.33  Aligned_cols=249  Identities=14%  Similarity=0.173  Sum_probs=197.3

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      -+.+.++.    +|..++.|+..| +-.+|..+......+.      -.+.|..+.|.  .+.. ++|++- ...+.|||
T Consensus       132 PY~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~L--Hneq-~~AVAQ-K~y~yvYD  197 (545)
T KOG1272|consen  132 PYHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFL--HNEQ-FFAVAQ-KKYVYVYD  197 (545)
T ss_pred             CeeeeecC----CccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhh--cchH-HHHhhh-hceEEEec
Confidence            45677776    788888888877 9999999998877776      45678888887  4454 676665 67899999


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                       ..|..+.-++.| ..|..+.|.| ..-+|++++..|.++.-|+.+|+.+..+.   .-.+.+..++-+| -...+-+|.
T Consensus       198 -~~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP-~NaVih~Gh  270 (545)
T KOG1272|consen  198 -NNGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNP-YNAVIHLGH  270 (545)
T ss_pred             -CCCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCC-ccceEEEcC
Confidence             667777777755 5689999999 88899999999999999999999999998   4678888999999 777899999


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~  272 (346)
                      ..|+|.+|....                       ..++..+..|.+.|.+++++  |+|++|.+.|..++|||++... 
T Consensus       271 snGtVSlWSP~s-----------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-  326 (545)
T KOG1272|consen  271 SNGTVSLWSPNS-----------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-  326 (545)
T ss_pred             CCceEEecCCCC-----------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-
Confidence            999999999988                       66888899999999999998  9999999999999999999865 


Q ss_pred             CCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE-cCCCC-----cceeeeeeeeEEEEEecC
Q 019117          273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE-LQSSP-----PVLIARLICFSLHVKYNP  342 (346)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd-~~~~~-----~~~~~~~~~~~~~~~~sp  342 (346)
                              .+.++.. ..+...++||.-|    +++.+....+.||. .-.+.     +.....+.+.|..+.|-|
T Consensus       327 --------ql~t~~t-p~~a~~ls~Sqkg----lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  327 --------QLHTYRT-PHPASNLSLSQKG----LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             --------ccceeec-CCCcccccccccc----ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence                    2333333 2356678888776    44445556799994 33322     333445556677777776

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=9.7e-19  Score=143.11  Aligned_cols=249  Identities=17%  Similarity=0.210  Sum_probs=167.0

Q ss_pred             cCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           79 DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      ...|.+.|.+++..  |.|. +|++|+.||+|+||.+.++++++++. -.+.|.||+|+|.....+++......+.|-+.
T Consensus       396 yrGHtg~Vr~iSvd--p~G~-wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  396 YRGHTGLVRSISVD--PSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             EeccCCeEEEEEec--CCcc-eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            34588888888777  7788 99999999999999999999999887 56789999999954444444444444555443


Q ss_pred             CCCee--------------------------------------EEEecccCCCCcceEEEEecCCCCcEEEEEecC---C
Q 019117          159 QTGIC--------------------------------------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---N  197 (346)
Q Consensus       159 ~~~~~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~  197 (346)
                      .-|..                                      ...+    .|...|+.+.||. .|.+|++...+   .
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I----~~~k~i~~vtWHr-kGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI----KHPKSIRQVTWHR-KGDYLATVMPDSGNK  546 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE----ecCCccceeeeec-CCceEEEeccCCCcc
Confidence            32200                                      0112    3788899999997 88999887554   4


Q ss_pred             eEEEEEccccceeeeece--e----ecCCCCC--CCCcc-c---------eeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          198 TVKIWSMKEFWTYVEKSF--T----WTDLPSK--FPTKY-V---------QFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       198 ~i~iwd~~~~~~~~~~~~--~----~~~~~~~--~~~~~-~---------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      .|.|+++...........  .    ..-++..  +.... .         +..+..+......|.+++.+  |+.|+.++
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            788998876433211100  0    0000000  00000 0         00011112233456777777  89999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC------CC-cceeee
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS------SP-PVLIAR  330 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~------~~-~~~~~~  330 (346)
                      .|+.+..+|+.-..        .+.+++..|...+++++|++.-  .++++|+.||.+.|+.-.-      +. .+....
T Consensus       627 ~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~  696 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR  696 (733)
T ss_pred             CCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence            99999999998764        2788888999999999999877  7999999999999985321      11 233444


Q ss_pred             eeee-------EEEEEecCCCCC
Q 019117          331 LICF-------SLHVKYNPQSVY  346 (346)
Q Consensus       331 ~~~~-------~~~~~~spdg~~  346 (346)
                      +.+|       +.++.|+|..++
T Consensus       697 L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  697 LRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             ccCceeecccceEeecccCCCce
Confidence            5544       566789997653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.8e-18  Score=148.38  Aligned_cols=256  Identities=10%  Similarity=0.134  Sum_probs=176.8

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeee---c---CCCccceEEEEEEEcCCCCcEEEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYV---D---EDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~---~---~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ...|+.+.+-...  |..++.+|+.|| |+||+-...  +..+.+..+.   .   ...+.. ..+.|.  .... +|++
T Consensus      1109 ~t~Vs~l~liNe~--D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWq--Q~~G-~Ll~ 1182 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQ--DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQ--QQSG-HLLV 1182 (1387)
T ss_pred             CCccceeeeeccc--chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehh--hhCC-eEEe
Confidence            3568888887533  668999999999 999985433  2222222221   1   111112 335554  5444 5666


Q ss_pred             eecCCeEEEEEccCcceeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCCCcc--e
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRNE--V  177 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~--v  177 (346)
                      ++.-..|+|||....+.+..+.. ...-|+++.-+-..++.+++|..||.|++||.+....   +...+   .|...  |
T Consensus      1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~I 1259 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPI 1259 (1387)
T ss_pred             cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec---ccCCcccc
Confidence            66688999999998888877764 3456777777665789999999999999999986543   44455   57766  9


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--c-ceEEEEec--CCE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--N-YVDCNRWL--GDF  252 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~~~~~~--~~~  252 (346)
                      ..+.+.+.+-..|++|+.||.|++||++....                     ........|-  + .++++..+  ...
T Consensus      1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---------------------e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---------------------ETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred             eeEEeecCCCcceeeeccCCeEEEEecccCcc---------------------cccceeeeccccCccceeeeeccCCCe
Confidence            99999984445699999999999999998211                     1111222222  2 37777777  668


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +|+|+. +.|+||++...+..........   +....+.+.+++|+|..  .++|+|+.|..|.||......
T Consensus      1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F---~~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGF---MGQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeecCc-ceEEEEecChhhhcccccCccc---ccCcCCCcceeeecchh--HhhhhccCCceEEEeecCCcC
Confidence            888888 9999999987654322211111   11234677999999988  789999999999999987654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.3e-16  Score=137.42  Aligned_cols=271  Identities=22%  Similarity=0.385  Sum_probs=200.0

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ......+..|...|.+++|+|    ++..+++++. ++ +++|+...+.....+..     |...+.++++.  |++..+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~~~  213 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-----HTDPVSSLAFS--PDGGLL  213 (466)
T ss_pred             CeEEEEEecCcccEEEEEECC----CCCEEEecCCCCCceEEEEcCCCceEEeecc-----CCCceEEEEEc--CCcceE
Confidence            466677789999999999999    6668888874 66 99999888666666654     67788888887  777624


Q ss_pred             EEEeecCCeEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCCcceE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNEVL  178 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~  178 (346)
                      +++++.|+.|++||...+.... .+..|.... ...|+| ++..+++++.|+.+++|++..... +..+.   .|...+.
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~v~  288 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLS---GHSSSVL  288 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEe---cCCccEE
Confidence            4444899999999988777777 688888875 448999 668888999999999999986665 44443   6899999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE--EeecccceEEEEec--CCEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI--ASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~--~~~l~  254 (346)
                      ++.|.| ++..+++++.|+.+.+||+.....                       ...  ...|...+..+.+.  +..++
T Consensus       289 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         289 SVAFSP-DGKLLASGSSDGTVRLWDLETGKL-----------------------LSSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             EEEECC-CCCEEEEeeCCCcEEEEEcCCCce-----------------------EEEeeecccCCceEEEEECCCCCEEE
Confidence            999999 777788798898899998877321                       112  23566667777773  14555


Q ss_pred             EE-eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-
Q 019117          255 SK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-  332 (346)
Q Consensus       255 ~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-  332 (346)
                      .+ ..|+.+.+|+.....         ......... .+..+.+++ . ......+..++.+.+|+............. 
T Consensus       345 ~~~~~d~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGK---------PLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT  412 (466)
T ss_pred             EeecCCCcEEeeecCCCc---------eeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence            55 678899999998764         111111111 278888888 6 345555899999999999988755544443 


Q ss_pred             eeEEEEEecCCCC
Q 019117          333 CFSLHVKYNPQSV  345 (346)
Q Consensus       333 ~~~~~~~~spdg~  345 (346)
                      ..+....+++++.
T Consensus       413 ~~~~~~~~~~~~~  425 (466)
T COG2319         413 SRVTSLDFSPDGK  425 (466)
T ss_pred             CcEEEEEECCCCc
Confidence            5566677777664

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=1.4e-17  Score=126.49  Aligned_cols=253  Identities=13%  Similarity=0.119  Sum_probs=183.6

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      -.++|+|.+|++    ++..+|.+-.+. |.||.....+..+....+  ..|...|+.++|+  |..+ .|++++.|..-
T Consensus         9 ~~~pitchAwn~----drt~iAv~~~~~evhiy~~~~~~~w~~~htl--s~Hd~~vtgvdWa--p~sn-rIvtcs~drna   79 (361)
T KOG1523|consen    9 LLEPITCHAWNS----DRTQIAVSPNNHEVHIYSMLGADLWEPAHTL--SEHDKIVTGVDWA--PKSN-RIVTCSHDRNA   79 (361)
T ss_pred             ccCceeeeeecC----CCceEEeccCCceEEEEEecCCCCceeceeh--hhhCcceeEEeec--CCCC-ceeEccCCCCc
Confidence            457899999998    789999998886 999998777655555444  3488999999998  7776 89999999999


Q ss_pred             EEEEc-cCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-cCCCCcceEEEEecCCC
Q 019117          111 RVIDV-SNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       111 ~iwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  186 (346)
                      ++|.. ..+  ++...+..++..++++.|+| .++.|++|+.-..|.||-++..+--..-+. ...+.+.|++++|+| +
T Consensus        80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-n  157 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-N  157 (361)
T ss_pred             cccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-C
Confidence            99998 333  35566677999999999999 999999999999999998875544322221 013678899999999 8


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCC-CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                      .-+++.|+.|+..++|..--.      .+.....+.... ....+..+.......+.+..+.|+  |+.|+-.+.|.++.
T Consensus       158 nVLlaaGs~D~k~rVfSayIK------~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~  231 (361)
T KOG1523|consen  158 NVLLAAGSTDGKCRVFSAYIK------GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS  231 (361)
T ss_pred             cceecccccCcceeEEEEeee------ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence            899999999999999976431      111111111111 111223344444667889999998  99999999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      +-|.....+        .+.......-+..++.|-.+.   .++.++.|
T Consensus       232 ~~da~~p~~--------~v~~~~~~~lP~ls~~~ise~---~vv~ag~~  269 (361)
T KOG1523|consen  232 FVDAAGPSE--------RVQSVATAQLPLLSVSWISEN---SVVAAGYD  269 (361)
T ss_pred             EeecCCCch--------hccchhhccCCceeeEeecCC---ceeecCCC
Confidence            999877642        222333333466667776654   35555555

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.1e-17  Score=140.11  Aligned_cols=275  Identities=15%  Similarity=0.167  Sum_probs=189.9

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc--Cc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~--~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ..|.-.++|.++||    +++++|++..+| |.+|.-..  +.  ....+.-     |...|.+++|+  ++|. +|++|
T Consensus       202 ~~Htf~~t~~~~sp----n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-----H~~~V~~L~fS--~~G~-~LlSG  269 (792)
T KOG1963|consen  202 VHHTFNITCVALSP----NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-----HHDEVNSLSFS--SDGA-YLLSG  269 (792)
T ss_pred             hhhcccceeEEecc----ccceEEEeccCCcEEEEeccccccccccceEEEe-----cccccceeEEe--cCCc-eEeec
Confidence            45777799999999    789999999998 99997543  11  1222322     66788888887  9999 99999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC--------CCcc
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG--------HRNE  176 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~  176 (346)
                      +..|.+.+|.+.+++ .+-++.-.++|..+.++| ++.+.+....|..|.+....+......+.....        ..+-
T Consensus       270 G~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  270 GREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             ccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence            999999999999988 556677789999999999 888888888899999998866555444442211        2455


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC----------------------------CCcc
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF----------------------------PTKY  228 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~  228 (346)
                      .+.++++| ..+.++-.+..|.|.+||+.+.....+............                            ....
T Consensus       348 ~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~  426 (792)
T KOG1963|consen  348 TTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF  426 (792)
T ss_pred             ceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence            67899999 777788888999999999987433222111111100000                            0000


Q ss_pred             ---c------------ee--ceEEEeecccceEEEEec----CCEEEEEeecCeEEEEcCCCCCCCCCCc-ccccccccc
Q 019117          229 ---V------------QF--PVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEG-TADILQKYP  286 (346)
Q Consensus       229 ---~------------~~--~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~  286 (346)
                         .            ..  .-.....|...+....+.    ...+++++.||.++||-+...+...... ...+...-.
T Consensus       427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s  506 (792)
T KOG1963|consen  427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS  506 (792)
T ss_pred             CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence               0            00  011222455555555554    3489999999999999996655432222 122222222


Q ss_pred             CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .|..++.+++|+.||   -+++.+.|+.|.+||..+
T Consensus       507 y~k~~i~a~~fs~dG---slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  507 YHKTPITALCFSQDG---SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cccCcccchhhcCCC---cEEEEecCCEEEEecCCC
Confidence            377899999999999   356667788999999988

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=1.7e-17  Score=128.37  Aligned_cols=160  Identities=17%  Similarity=0.288  Sum_probs=133.6

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee--cCCeE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG--INGII  110 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i  110 (346)
                      ..+|.+|.++.      ++|+++-.+.|+|||+.+.+.++.+.....  +...+  +++++++++. +++.=+  ..|.|
T Consensus        87 pt~IL~VrmNr------~RLvV~Lee~IyIydI~~MklLhTI~t~~~--n~~gl--~AlS~n~~n~-ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   87 PTSILAVRMNR------KRLVVCLEESIYIYDIKDMKLLHTIETTPP--NPKGL--CALSPNNANC-YLAYPGSTTSGDV  155 (391)
T ss_pred             CCceEEEEEcc------ceEEEEEcccEEEEecccceeehhhhccCC--Cccce--EeeccCCCCc-eEEecCCCCCceE
Confidence            46788888864      788888888899999999888888775421  22333  6666667776 777543  46899


Q ss_pred             EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC-EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES-VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      .+||+.+-+.+..+..|.+.+.+++|++ ++.+||++++.|+ |+|+.+.+|+.+.+|+... ....|.+++|+| ++.+
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~-ds~~  232 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSP-DSQF  232 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECC-CCCe
Confidence            9999999999999999999999999999 9999999999997 6899999999999998532 256789999999 8999


Q ss_pred             EEEEecCCeEEEEEccc
Q 019117          190 IASCGMDNTVKIWSMKE  206 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~  206 (346)
                      |.+.+..++|++|.+..
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            99999999999999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=2e-18  Score=139.67  Aligned_cols=208  Identities=20%  Similarity=0.282  Sum_probs=159.3

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      +.|+.++.|| +.+.+ +.++..+.+..     |.+.+.+-.|+  |||. -|++++.||.|++|. ++|....++....
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-----H~~A~~~gRW~--~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~  145 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISA-----HAAAISSGRWS--PDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNE  145 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhh-----hhhhhhhcccC--CCCc-eeeeecCCceEEEEe-ccchHHHHHhhcC
Confidence            4666666666 77776 45555555543     77788777887  9998 899999999999999 6777666676678


Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  208 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  208 (346)
                      .+|.|++|.|+..+.+++.+  +.+.|=.+.....+...+   +|.+-|.++.|++ ..+++++|+.|-..++||-..  
T Consensus       146 ~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G--  217 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWR---AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG--  217 (737)
T ss_pred             ceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEe---ccCcEEEEeecCc-cccceeecCCceeEEeecccC--
Confidence            89999999995555555544  566666776666666777   7999999999998 889999999999999999875  


Q ss_pred             eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccC
Q 019117          209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV  287 (346)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  287 (346)
                                            .+++....|+.+|++++|+++ .++.++. ++.|+=.+                    
T Consensus       218 ----------------------~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~~p--------------------  254 (737)
T KOG1524|consen  218 ----------------------ANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFSSP--------------------  254 (737)
T ss_pred             ----------------------cccccCChhccceeeeeeccccceeeeee-eeeeecCC--------------------
Confidence                                  567778889999999999954 4444443 45552222                    


Q ss_pred             CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          288 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       288 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      ..+.|..++||+||  ..+++|...|.+.+=.+
T Consensus       255 ~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  255 RVGSIFNLSWSADG--TQATCGTSTGQLIVAYA  285 (737)
T ss_pred             CccceEEEEEcCCC--ceeeccccCceEEEeee
Confidence            24689999999999  78999988887765433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=2.3e-18  Score=142.13  Aligned_cols=230  Identities=17%  Similarity=0.307  Sum_probs=160.3

Q ss_pred             CCcEEEEEeccCceee--eEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-------ceeeeeccC
Q 019117           57 GNRVTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGH  127 (346)
Q Consensus        57 ~~~v~i~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~  127 (346)
                      .+.|-||++.....+.  .+...   ..+..|+.+.|.  |-....|++++.||.|++|.+..+       ++...+..|
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l---~Ngt~vtDl~Wd--PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h  676 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGL---FNGTLVTDLHWD--PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH  676 (1012)
T ss_pred             CceEEEEEcCCCCCCCccccccc---ccCceeeecccC--CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence            3349999987654322  12221   145677778777  533337999999999999998654       345677889


Q ss_pred             CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      ...|+++.|+|-..+.|++++.|.+|++||+.+++....+.   +|.+.|.+++|+| +|+.+++.+.||+|++|+.++.
T Consensus       677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~---gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV---GHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec---cCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC
Confidence            99999999999888999999999999999999999888888   8999999999999 9999999999999999999884


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEEEEeec----CeEEEEcCCCCCCCCCCcccc
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVD----NEIVLWEPKMKEQSPGEGTAD  280 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~  280 (346)
                      ..                      +++.-.+-. ..-..+.|.  |+++++.+.|    ..|.+||..+-...       
T Consensus       753 e~----------------------pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~-------  803 (1012)
T KOG1445|consen  753 EQ----------------------PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR-------  803 (1012)
T ss_pred             CC----------------------ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC-------
Confidence            32                      111111100 111223343  7888877765    44778877654311       


Q ss_pred             ccccccCCCc-CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          281 ILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       281 ~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      .+........ .+.--.+.+|.. .++++|-.|..|++|.+-..++
T Consensus       804 pl~t~~lDvaps~LvP~YD~Ds~-~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  804 PLYTQVLDVAPSPLVPHYDYDSN-VLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             cceeeeecccCccccccccCCCc-eEEEecCCCceEEEEEecCCCc
Confidence            1111111100 011112334443 5888999999999999977664

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=2.6e-17  Score=128.17  Aligned_cols=272  Identities=11%  Similarity=0.138  Sum_probs=199.7

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .....|..++|.- ++ ..+.|...+.+. +..+..........+.... .......|-.+..   .+|  .|++|-.+|
T Consensus        53 ~~~~ris~l~~~~-d~-~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg--~Litc~~sG  125 (412)
T KOG3881|consen   53 DELDRISSLLFGV-DG-ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG--TLITCVSSG  125 (412)
T ss_pred             chhhhhhhheeec-CC-ceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC--EEEEEecCC
Confidence            4456788888884 32 445666664444 7666666555444331100 0012234444443   345  588888999


Q ss_pred             eEEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCC--CCEEEEecCCCeeEEEecccCC------CCcc
Q 019117          109 IIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGAGG------HRNE  176 (346)
Q Consensus       109 ~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~------~~~~  176 (346)
                      .+.+|....+.    .+..+..+ ..+..+.-++.....+++|+..  ..+++||+...+.+..-+....      -+-+
T Consensus       126 ~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW  204 (412)
T KOG3881|consen  126 NLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW  204 (412)
T ss_pred             cEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence            99999987443    23334433 4567777788677788889998  8999999998877665543211      2345


Q ss_pred             eEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117          177 VLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  252 (346)
Q Consensus       177 v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  252 (346)
                      ++++.|-+ +  ...|++++.-+.+++||.+..                      ..|+..+...+..|+++...  +++
T Consensus       205 ~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q----------------------RRPV~~fd~~E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  205 ITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ----------------------RRPVAQFDFLENPISSTGLTPSGNF  261 (412)
T ss_pred             eccceecC-CCCCceEEEEecceeEEEecCccc----------------------CcceeEeccccCcceeeeecCCCcE
Confidence            78899987 6  789999999999999999973                      45777788788888888776  899


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      +++|..-+.+..||++.++.        ....+.+..+.|+++..+|..  .+|++++-|..|+|+|+++.+++...-+.
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl--------~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrkll~kvYvK  331 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKL--------LGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRKLLHKVYVK  331 (412)
T ss_pred             EEEecccchhheecccCcee--------eccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccchhhhhhhhh
Confidence            99999999999999999873        344478888999999999998  79999999999999999998877777778


Q ss_pred             eeEEEEEecCC
Q 019117          333 CFSLHVKYNPQ  343 (346)
Q Consensus       333 ~~~~~~~~spd  343 (346)
                      .+.+++.+.++
T Consensus       332 s~lt~il~~~~  342 (412)
T KOG3881|consen  332 SRLTFILLRDD  342 (412)
T ss_pred             ccccEEEecCC
Confidence            88888877654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.8e-18  Score=134.76  Aligned_cols=202  Identities=18%  Similarity=0.177  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      ..++++.+|. .|++|+.||++|||++.+...+.....|...|.++.|+| ++.+|++-+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            3455668988 999999999999999888888888888999999999999 99999999999 89999999997776665


Q ss_pred             ccCCCCcceEEEEecCCCC---c-EEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          169 GAGGHRNEVLSVDFHPSDI---Y-RIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~---~-~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      .. ........+.|+. +.   . ++++ -..-+.|+.||+......                  .-.+..+.....+.|
T Consensus       225 ~~-~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------------~~l~~~~~~~~~~si  284 (398)
T KOG0771|consen  225 PF-SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGS------------------NFLRLRKKIKRFKSI  284 (398)
T ss_pred             Cc-ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccc------------------cccchhhhhhccCcc
Confidence            21 2345566777875 44   2 2333 333456777777652110                  001122233344578


Q ss_pred             EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++++.+  |++++.|+.||.|.|++..+.+.        ....-..|..-|+.+.|+||.  +++++.+.|..+.+..+.
T Consensus       285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~--------~~~vk~aH~~~VT~ltF~Pds--r~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--------LQYVKEAHLGFVTGLTFSPDS--RYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eeEEEcCCCcEEEEeccCCcEEEEEeceeee--------eEeehhhheeeeeeEEEcCCc--CcccccccCCceeEEEEe
Confidence            899888  99999999999999999988762        333445688899999999999  789999999999998886


Q ss_pred             CC
Q 019117          322 SS  323 (346)
Q Consensus       322 ~~  323 (346)
                      -.
T Consensus       355 vd  356 (398)
T KOG0771|consen  355 VD  356 (398)
T ss_pred             ec
Confidence            63

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=3.8e-16  Score=129.28  Aligned_cols=258  Identities=12%  Similarity=0.102  Sum_probs=150.7

Q ss_pred             EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe-ecCCeEEEEEcc-Ccce--eeeecc
Q 019117           52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVS-NEKL--HKSFVG  126 (346)
Q Consensus        52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~-~~~~--~~~~~~  126 (346)
                      +++...++ |.+|++.+...+..++...   .......+++  +|+++ +|+++ ..++.|.+|+++ +++.  +.... 
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~--spd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-   77 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVI--SPDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP-   77 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEE--CCCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence            33334444 9999996544444444332   2223334544  49998 66555 457899999986 3332  22222 


Q ss_pred             CCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCC-e---eEEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEE
Q 019117          127 HGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTG-I---CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVK  200 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~  200 (346)
                      ..+....++++| +++++++++ .++.|.+|++.+. .   .+..+.    +...+.+++++| +++++ ++...++.|.
T Consensus        78 ~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p-~g~~l~v~~~~~~~v~  151 (330)
T PRK11028         78 LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDP-DNRTLWVPCLKEDRIR  151 (330)
T ss_pred             CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence            334567899999 777776665 4889999999642 2   222222    334567788999 66656 5555679999


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCCCCCCCc
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEG  277 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~  277 (346)
                      +||+..........               . ...... .......+.|+  +++++++.. +++|.+|+++....     
T Consensus       152 v~d~~~~g~l~~~~---------------~-~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-----  209 (330)
T PRK11028        152 LFTLSDDGHLVAQE---------------P-AEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-----  209 (330)
T ss_pred             EEEECCCCcccccC---------------C-CceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----
Confidence            99997621100000               0 000000 01223456666  778877776 89999999974211     


Q ss_pred             cccccccccC------CCcCeeEEEEeecCCcceEEEE-cCCCcEEEEEcCCCCc-ce---eeeeeeeEEEEEecCCCCC
Q 019117          278 TADILQKYPV------PECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPP-VL---IARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       278 ~~~~~~~~~~------~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~---~~~~~~~~~~~~~spdg~~  346 (346)
                      ....+..+..      +......+.|+|++  ++|+++ ..++.|.+|++..... ..   .......+..+.|+|||++
T Consensus       210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg--~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~  287 (330)
T PRK11028        210 EIECVQTLDMMPADFSDTRWAADIHITPDG--RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKY  287 (330)
T ss_pred             CEEEEEEEecCCCcCCCCccceeEEECCCC--CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCE
Confidence            0011221111      11123468899999  566666 4578999999965432 11   1112223567999999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=4.1e-16  Score=118.47  Aligned_cols=238  Identities=16%  Similarity=0.217  Sum_probs=164.7

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE-EeecC------C
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV-AGGIN------G  108 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-~~~~d------g  108 (346)
                      ...++|+.    |...++.|.+.|.+||++..-+....-+.     ..+.+..+.+.+-  .+ +|+ +|+.+      .
T Consensus         8 ~lsvs~NQ----D~ScFava~~~Gfriyn~~P~ke~~~r~~-----~~~G~~~veMLfR--~N-~laLVGGg~~pky~pN   75 (346)
T KOG2111|consen    8 TLSVSFNQ----DHSCFAVATDTGFRIYNCDPFKESASRQF-----IDGGFKIVEMLFR--SN-YLALVGGGSRPKYPPN   75 (346)
T ss_pred             eeEEEEcc----CCceEEEEecCceEEEecCchhhhhhhcc-----ccCchhhhhHhhh--hc-eEEEecCCCCCCCCCc
Confidence            34489998    67899999999999999875222111111     1122222333322  12 333 33333      5


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      .|.|||=...+++.++. -..+|.+|.+.+   ..+++.- .+.|.||... +.+.+..+.... .+..+.+++-+. +.
T Consensus        76 kviIWDD~k~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~-~k  148 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTS-NK  148 (346)
T ss_pred             eEEEEecccCcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeeccc-CCCceEeecCCC-Cc
Confidence            79999966666777766 678899999986   4555554 4789999987 566677666432 233344444332 33


Q ss_pred             cEEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe-EE
Q 019117          188 YRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-IV  263 (346)
Q Consensus       188 ~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~-i~  263 (346)
                      .+|+. |-.-|.|++-|+.....                     .+...+..|...|.|++.+  |.++|++|..|+ ||
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~---------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKP---------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCc---------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence            44443 44568999999987221                     1346788999999999999  999999999988 89


Q ss_pred             EEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      |||..++.         .+.++..  ....|.+++|||+.  .+||+.|+.|+|+||.++...
T Consensus       208 IFdt~~g~---------~l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  208 IFDTEDGT---------LLQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEcCCCc---------EeeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEEEEeecCC
Confidence            99999987         4555543  34679999999999  799999999999999998744

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=1.6e-15  Score=125.56  Aligned_cols=283  Identities=11%  Similarity=0.086  Sum_probs=162.2

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ..+++...+. +.+....++++|    ++++|++++. ++ |.+|++.....+.......   .......+  .++|+++
T Consensus        23 g~l~~~~~~~-~~~~~~~l~~sp----d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i--~~~~~g~   92 (330)
T PRK11028         23 GALTLLQVVD-VPGQVQPMVISP----DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHI--STDHQGR   92 (330)
T ss_pred             CceeeeeEEe-cCCCCccEEECC----CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEE--EECCCCC
Confidence            3445555554 335567889999    6787766543 33 9999987433333333221   11223334  4559998


Q ss_pred             cEEEEee-cCCeEEEEEccCc-c---eeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEE-----e
Q 019117           99 PFLVAGG-INGIIRVIDVSNE-K---LHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILI-----F  167 (346)
Q Consensus        99 ~~l~~~~-~dg~i~iwd~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~-----~  167 (346)
                       +|++++ .++.|.+|++++. .   .+..+. +......++++| +++++ ++...++.|.+||+.+...+..     .
T Consensus        93 -~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~  169 (330)
T PRK11028         93 -FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV  169 (330)
T ss_pred             -EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence             666665 4889999999642 2   222232 234467889999 66665 5556679999999976433221     1


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      ..  ........++|+| ++++++++.. ++.|.+|++................+..             ..+......+
T Consensus       170 ~~--~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-------------~~~~~~~~~i  233 (330)
T PRK11028        170 TT--VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-------------FSDTRWAADI  233 (330)
T ss_pred             ec--CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-------------CCCCccceeE
Confidence            11  1234567899999 8787777765 8999999997421111000000000000             0011122345


Q ss_pred             Eec--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcC-
Q 019117          247 RWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQ-  321 (346)
Q Consensus       247 ~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~-  321 (346)
                      .++  +++++++.. ++.|.+|++.....     ....+...... .....+.|+||+  ++|+++. .++.|.+|++. 
T Consensus       234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-----~~~~~~~~~~~-~~p~~~~~~~dg--~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        234 HITPDGRHLYACDRTASLISVFSVSEDGS-----VLSFEGHQPTE-TQPRGFNIDHSG--KYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEeCCCC-----eEEEeEEEecc-ccCCceEECCCC--CEEEEEEccCCcEEEEEEcC
Confidence            555  778888754 78999999965421     01122222211 245678999999  4555544 58999999875 


Q ss_pred             -CCCcce--eeeeeeeEEEEEe
Q 019117          322 -SSPPVL--IARLICFSLHVKY  340 (346)
Q Consensus       322 -~~~~~~--~~~~~~~~~~~~~  340 (346)
                       ++....  .+.....+.+++|
T Consensus       306 ~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        306 ETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             CCCcEEEccccccCCCceEEEE
Confidence             344322  2223334556554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.6e-17  Score=130.54  Aligned_cols=182  Identities=20%  Similarity=0.261  Sum_probs=129.0

Q ss_pred             EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceee
Q 019117          132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV  211 (346)
Q Consensus       132 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  211 (346)
                      ..++|+. ++..+++|+.||++++|++.+...+....   .|...|.++.|+| ++.+|++-+.| ..+||+.+++....
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~---~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEI---AHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhH---hhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhh
Confidence            6899999 88999999999999999987777777666   6999999999999 99999999999 99999999842110


Q ss_pred             eeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C---C-EEEE-EeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117          212 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G---D-FILS-KSVDNEIVLWEPKMKEQSPGEGTADILQK  284 (346)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~---~-~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  284 (346)
                      .+.                     -..-+.....+.|.  +   . ++++ ...-+.|+.|++...+...   .. ...+
T Consensus       222 ~~t---------------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~---~l-~~~~  276 (398)
T KOG0771|consen  222 RKT---------------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN---FL-RLRK  276 (398)
T ss_pred             hcC---------------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc---cc-chhh
Confidence            000                     01111223334444  2   1 2222 2334566676665543210   00 1222


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCCCCC
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spdg~~  346 (346)
                      .......|++++.++||  ++++.|+.||.|.|++..+.+.++..  .+.+.++.+.|+||.+|
T Consensus       277 ~~~~~~siSsl~VS~dG--kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  277 KIKRFKSISSLAVSDDG--KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             hhhccCcceeEEEcCCC--cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence            22234589999999999  79999999999999999988765543  34557999999999886

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=2.2e-16  Score=139.57  Aligned_cols=273  Identities=11%  Similarity=0.108  Sum_probs=178.2

Q ss_pred             ccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeeeecCCCccceEEEEEE
Q 019117           18 SKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWA   92 (346)
Q Consensus        18 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~   92 (346)
                      ..+....++.+|..|...|..++.++   +.+.+|++|+.|| |++|++.+-.    ..+.-..+.  ..+..+.++.++
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~---~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys--~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSS---EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS--PEGSRVEKVTMC 1107 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecC---CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe--ccCCceEEEEec
Confidence            34667788899999999999999987   2458999999999 9999987532    222222332  256778888887


Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCc--c-----eeeeecc--CCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCe
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNE--K-----LHKSFVG--HGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~--~-----~~~~~~~--~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~  162 (346)
                        +.+. .+|.++.||.|++.+++..  +     +.+....  ....|..-+|...... .++.+..-+.|..||++...
T Consensus      1108 --~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1108 --GNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred             --cCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence              6677 8999999999999998762  1     1111111  2223444445443344 77788888999999999887


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-eccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSN  241 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  241 (346)
                      ....++.. ...+.|++++.+| .+.++++|+..|.+.+||+|-.                       .++.... .+..
T Consensus      1185 ~~w~lk~~-~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-----------------------~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1185 DAWRLKNQ-LRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-----------------------VPILSWEHPARA 1239 (1431)
T ss_pred             hHHhhhcC-ccccceeEEEecC-CceEEEEecCCceEEEEEeecC-----------------------ceeecccCcccC
Confidence            77766633 2357899999999 8899999999999999999982                       2222211 1224


Q ss_pred             ceEEEEec---C--CEEEEEe--ecCeEEEEcCCCCCCCCCCccc--cccccccCC------CcCe--eEEEEeecCCcc
Q 019117          242 YVDCNRWL---G--DFILSKS--VDNEIVLWEPKMKEQSPGEGTA--DILQKYPVP------ECDI--WFIKFSCDFHYN  304 (346)
Q Consensus       242 ~i~~~~~~---~--~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~------~~~v--~~~~~s~~~~~~  304 (346)
                      +|+.+..+   +  ...++++  ..+.|.+|++.++.........  .+......+      ...+  ...++. ++. .
T Consensus      1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~-~ 1317 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKN-G 1317 (1431)
T ss_pred             CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCC-c
Confidence            45554444   3  4455444  4788999999887532111000  000000000      1111  112222 222 5


Q ss_pred             eEEEEcCCCcEEEEEcCCCCc
Q 019117          305 AAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      ++.+|+.|..|+.||...-+.
T Consensus      1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeeecCCccceeeccCCCccc
Confidence            899999999999999987653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.77  E-value=8.8e-17  Score=122.13  Aligned_cols=214  Identities=12%  Similarity=0.156  Sum_probs=164.4

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      ..++|++.+|.  +|+. .+|.+-.+..|.||.....+   ...++..|...|+.|.|+| ..+.|++++.|..-++|..
T Consensus         9 ~~~pitchAwn--~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWN--SDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeec--CCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCcccccc
Confidence            34678888887  8888 99999999999999987654   6778899999999999999 8999999999999999998


Q ss_pred             CCC-e--eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          159 QTG-I--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       159 ~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      ..+ +  +...+.   .+....+++.|+| .++.|++|+....|.+|-+.....-.                   .....
T Consensus        85 ~~~~~WkptlvLl---RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWW-------------------VsKhi  141 (361)
T KOG1523|consen   85 PSGGTWKPTLVLL---RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWW-------------------VSKHI  141 (361)
T ss_pred             CCCCeeccceeEE---EeccceeeEeecC-cCceEEeccCccEEEEEEEeccccee-------------------hhhhh
Confidence            433 2  222333   3889999999999 99999999999999999887621100                   00112


Q ss_pred             EeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCC---------CCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117          236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ---------SPGEGTADILQKYPVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  304 (346)
                      -..+...|++++|+  +-+|++|+.|+..|+|..--...         ....+...++.++....+.+..+.|+|+|  .
T Consensus       142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~  219 (361)
T KOG1523|consen  142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--N  219 (361)
T ss_pred             CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--C
Confidence            22355678899998  45888899999999997532211         11223444556665667899999999999  7


Q ss_pred             eEEEEcCCCcEEEEEcCCCC
Q 019117          305 AAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~~  324 (346)
                      .|+-.+.|+.+.+=|.....
T Consensus       220 ~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EeeEecCCCceEEeecCCCc
Confidence            89999999999999987654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=1.3e-18  Score=138.26  Aligned_cols=240  Identities=19%  Similarity=0.254  Sum_probs=181.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      ..|.++.|-.    +.+++|++....+.||| ..|..++.+..      ...|..+.|.  |..- +|++++..|.++--
T Consensus       171 Etv~Dv~~LH----neq~~AVAQK~y~yvYD-~~GtElHClk~------~~~v~rLeFL--PyHf-LL~~~~~~G~L~Y~  236 (545)
T KOG1272|consen  171 ETVRDVTFLH----NEQFFAVAQKKYVYVYD-NNGTELHCLKR------HIRVARLEFL--PYHF-LLVAASEAGFLKYQ  236 (545)
T ss_pred             hhhhhhhhhc----chHHHHhhhhceEEEec-CCCcEEeehhh------cCchhhhccc--chhh-eeeecccCCceEEE
Confidence            4577777776    56899999888899999 66777777763      3455557776  7666 89999999999999


Q ss_pred             EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117          114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                      |+.+|+.+..+..-.+.+..++-+| -...+-+|...|+|.+|.....+++..+.   .|.++|.++++.+ +|.+++|.
T Consensus       237 DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~-~G~YMaTt  311 (545)
T KOG1272|consen  237 DVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDR-GGRYMATT  311 (545)
T ss_pred             eechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECC-CCcEEeec
Confidence            9999999999998889999999999 77789999999999999999999888887   7999999999998 99999999


Q ss_pred             ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCC
Q 019117          194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS  273 (346)
Q Consensus       194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  273 (346)
                      +.|..++|||+++..                       .+.++.. +-....++++..-+++.+....|.||.=......
T Consensus       312 G~Dr~~kIWDlR~~~-----------------------ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~  367 (545)
T KOG1272|consen  312 GLDRKVKIWDLRNFY-----------------------QLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSG  367 (545)
T ss_pred             ccccceeEeeecccc-----------------------ccceeec-CCCccccccccccceeeecCCeeeeehhhhcCCC
Confidence            999999999999943                       2222322 4456778888666666777778999953221100


Q ss_pred             CCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          274 PGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       274 ~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                          .  ....+-.|  .+.|..+.|.|-.  .+|-.|...|.-.+.=--.|+
T Consensus       368 ----~--~~~pYm~H~~~~~V~~l~FcP~E--DvLGIGH~~G~tsilVPGsGe  412 (545)
T KOG1272|consen  368 ----H--GETPYMNHRCGGPVEDLRFCPYE--DVLGIGHAGGITSILVPGSGE  412 (545)
T ss_pred             ----C--CCcchhhhccCcccccceeccHH--HeeeccccCCceeEeccCCCC
Confidence                0  11111111  3489999999977  577776666644444333343

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.1e-16  Score=133.36  Aligned_cols=269  Identities=19%  Similarity=0.228  Sum_probs=181.8

Q ss_pred             EEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc
Q 019117           39 VVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE  118 (346)
Q Consensus        39 ~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  118 (346)
                      -.|++    |++.+.....+.|.||...++.++..+..     |..++..+.+..++....++.+++.+|.|++||...+
T Consensus        22 avfSn----D~k~l~~~~~~~V~VyS~~Tg~~i~~l~~-----~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   22 AVFSN----DAKFLFLCTGNFVKVYSTATGECITSLED-----HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             ccccc----CCcEEEEeeCCEEEEEecchHhhhhhccc-----ccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            45777    78899999889999999999999886664     6677777888766555348889999999999999999


Q ss_pred             ceeeeeccCCCceEEEEEeCC--CCceEE-EeeCCCCEEE-EecCCCeeEEE-----ecc-----cCCCCcceEEEEecC
Q 019117          119 KLHKSFVGHGDSINEIRTQPL--KPSLVV-SASKDESVRL-WNVQTGICILI-----FAG-----AGGHRNEVLSVDFHP  184 (346)
Q Consensus       119 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~-s~~~d~~i~i-wd~~~~~~~~~-----~~~-----~~~~~~~v~~~~~~~  184 (346)
                      ..++++..+ .++..+.+.|.  +...++ .+..|..+.. ......+....     +..     ...+.. ..++.+++
T Consensus        93 ~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~  170 (792)
T KOG1963|consen   93 ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNN  170 (792)
T ss_pred             EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcC
Confidence            988888743 33444444331  111122 2222211110 11111111111     110     001222 46777876


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI  262 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i  262 (346)
                       .+.+.... .+..+.+|+........                   .....-..|...+++.+++  +++++++..||.|
T Consensus       171 -~ge~~~i~-~~~~~~~~~v~~~~~~~-------------------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI  229 (792)
T KOG1963|consen  171 -SGEFKGIV-HMCKIHIYFVPKHTKHT-------------------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRI  229 (792)
T ss_pred             -CceEEEEE-EeeeEEEEEecccceee-------------------ccchhhhhhcccceeEEeccccceEEEeccCCcE
Confidence             66655544 45678888887622100                   0111222355557888887  8899999999999


Q ss_pred             EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117          263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                      .+|.-...+.     .......+..|...|.+++|+++|  .+|++|+.+|.+.+|.+.++++....++.+.+.++.+||
T Consensus       230 ~vw~d~~~~~-----~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~  302 (792)
T KOG1963|consen  230 LVWRDFGSSD-----DSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP  302 (792)
T ss_pred             EEEecccccc-----ccccceEEEecccccceeEEecCC--ceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC
Confidence            9997544211     112445677788899999999999  799999999999999999999888899999999999999


Q ss_pred             CCCC
Q 019117          343 QSVY  346 (346)
Q Consensus       343 dg~~  346 (346)
                      |+.+
T Consensus       303 ds~~  306 (792)
T KOG1963|consen  303 DSDL  306 (792)
T ss_pred             CCCe
Confidence            9864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.9e-16  Score=122.01  Aligned_cols=165  Identities=15%  Similarity=0.183  Sum_probs=129.3

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC------cceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESV  153 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i  153 (346)
                      .|.+.|.++.|+  .+++ +|++|+.|..+++|.+..      .+++.... .|...|.|++|.. +...+++|+.+++|
T Consensus        54 ~H~GCiNAlqFS--~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   54 EHTGCINALQFS--HNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV  129 (609)
T ss_pred             hhccccceeeec--cCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence            377788888877  7788 999999999999999854      34454443 3568999999998 88999999999999


Q ss_pred             EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      ..-|+++.+.+..+... ...+.|+.+..+| -.+.+++.+.++.|.+||.+..+..                    ...
T Consensus       130 I~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~--------------------~~~  187 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANEN-NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNP--------------------ISL  187 (609)
T ss_pred             Eeeecccceeeeeeccc-CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCC--------------------Cce
Confidence            99999999999888621 1345999999999 6888999999999999999983321                    112


Q ss_pred             EEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCC
Q 019117          234 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      ...........++.|+   +.+|++.+..+-+.+||.+...
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence            2233334445566666   7799999999999999988654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.1e-16  Score=130.32  Aligned_cols=227  Identities=13%  Similarity=0.151  Sum_probs=164.2

Q ss_pred             eecc---ccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec------cCceeeeEeeeecCC
Q 019117           12 VGSL---TPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL------EGGVIAALQSYVDED   81 (346)
Q Consensus        12 ~~~~---~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~------~~~~~~~~~~~~~~~   81 (346)
                      .|.|   .+.....++++.+|++|.++|.|++..+    ++..+.+|+-|+ |+.|++-      +......+... ..+
T Consensus       320 ~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~-l~G  394 (577)
T KOG0642|consen  320 LWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT-LLG  394 (577)
T ss_pred             hhhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCCCCcccccCcchhccc-eec
Confidence            4666   5666788999999999999999999998    789999999999 9999654      21211122211 124


Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ  159 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  159 (346)
                      |.+.++.++++  .... .|++++.||+++.|+...... .++..  ..+.-.++.+-.......++...-+.-.+.++.
T Consensus       395 htdavw~l~~s--~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  395 HTDAVWLLALS--STKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             cccceeeeeec--cccc-ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence            88889888887  4444 799999999999999876655 33322  223445666655332344444434444445555


Q ss_pred             CCeeEEEecccC----CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          160 TGICILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       160 ~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      ....+..+....    .....+.-+.++| +..+.+++..|+.|+++|..+                       ..++..
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~-----------------------~~~l~s  526 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT-----------------------GKILHS  526 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc-----------------------cccchh
Confidence            555555444211    0123567788898 789999999999999999998                       567888


Q ss_pred             EeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117          236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      ...|...++++++.  |-+|++++.|+.+++|.+....
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            88999999999998  7899999999999999997654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=4.3e-16  Score=126.34  Aligned_cols=169  Identities=17%  Similarity=0.188  Sum_probs=126.9

Q ss_pred             EEEEEcC-CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC------------
Q 019117           51 VFATVGG-NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------  117 (346)
Q Consensus        51 ~la~~~~-~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------  117 (346)
                      -|..|-. +.|.+.|....+..+.+. .........++++.|.  |.+...++++-.+|.+.+||..-            
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfn-e~r~i~ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFN-EERLINKSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhh-hcccccccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            3444443 448887766532222222 1222245789999999  44444677888899999997521            


Q ss_pred             --c--------------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          118 --E--------------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       118 --~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                        +              .++..+.--.+.|+.++|+| ++.+||+.+.||.++|+|..+.+++..++   ..-+...|++
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvc  339 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVC  339 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEE
Confidence              0              11112222345789999999 99999999999999999999988888877   5678999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG  250 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  250 (346)
                      |+| |+++|++|++|.-|.||.+..                       ...+..-.+|..+|..++|++
T Consensus       340 WSP-DGKyIvtGGEDDLVtVwSf~e-----------------------rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  340 WSP-DGKYIVTGGEDDLVTVWSFEE-----------------------RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EcC-CccEEEecCCcceEEEEEecc-----------------------ceEEEeccccccceeeEeecc
Confidence            999 999999999999999999988                       556778889999999999985

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=3.5e-16  Score=115.86  Aligned_cols=238  Identities=14%  Similarity=0.141  Sum_probs=168.3

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                      |...++++.|.  .++  +|.+|...|.|++|++.+.+....++ .+...|+.+..-| + ..+.+-+.|..+.+|++.-
T Consensus        13 ~~~~v~s~~fq--a~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen   13 HSSSVTSVLFQ--ANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             ccchheehhhc--cch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccC
Confidence            66677777775  444  69999999999999999999888888 5788999999998 4 6788899999999999864


Q ss_pred             CeeEEEec---------------------------cc-----------------------CCCCcceEEEEecCCCC--c
Q 019117          161 GICILIFA---------------------------GA-----------------------GGHRNEVLSVDFHPSDI--Y  188 (346)
Q Consensus       161 ~~~~~~~~---------------------------~~-----------------------~~~~~~v~~~~~~~~~~--~  188 (346)
                      +..+..-.                           ..                       .+..+.+++..+....+  -
T Consensus        87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~  166 (323)
T KOG0322|consen   87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF  166 (323)
T ss_pred             cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence            21111000                           00                       02234455655433222  3


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  266 (346)
                      +++.|-++|.+.+||+...........             ..........|..+|.++.|.  -+.=++|+.+..+..|+
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~-------------~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQ-------------SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeecccc-------------ccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            566788899999999998432221111             112344566799999999997  44567788888899999


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCC
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSV  345 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~  345 (346)
                      ++.....     .............|..+.+-||+  +++|+++.|+.|+||+.++..++.+.+ +.+.+++++|+||..
T Consensus       234 l~~s~gs-----lq~~~e~~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  234 LNHSTGS-----LQIRKEITLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             eccccCc-----ccccceEEecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence            8765211     11112222234578889999999  799999999999999999999877654 446699999999953

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.4e-17  Score=132.44  Aligned_cols=184  Identities=18%  Similarity=0.192  Sum_probs=144.4

Q ss_pred             eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC-CCcEEEEEecCCe
Q 019117          120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNT  198 (346)
Q Consensus       120 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~  198 (346)
                      +.+.+.+|++-|+++.|+. ++.+|++|++|-.+.|||.-..+++..+..  +|...|.++.|-|. +..++++|..|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcce
Confidence            3457789999999999999 999999999999999999998888888876  89999999999993 4578899999999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCC-C
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-P  274 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~  274 (346)
                      |++||+...+....             ......+......|.+.|..++..   ++.+.++++||+|+-+|++....- +
T Consensus       119 i~lfdl~~~~~~~~-------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGM-------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             EEEEeccccccccc-------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence            99999987332111             011234556677888888888876   589999999999999999975321 1


Q ss_pred             CCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       275 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      .......+..+...--...++.++|... .+|++|+.|-..++||.
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDR  230 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhh
Confidence            1112223334443445678899999876 69999999999999994

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.2e-16  Score=118.61  Aligned_cols=284  Identities=14%  Similarity=0.173  Sum_probs=181.5

Q ss_pred             EEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc
Q 019117           39 VVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE  118 (346)
Q Consensus        39 ~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  118 (346)
                      .+|||    +|+++|+++.-++.|-|..+-+..+.+..      -+.|.-+.|.  .|....|.....++.|.+|++...
T Consensus        14 c~fSp----~g~yiAs~~~yrlviRd~~tlq~~qlf~c------ldki~yieW~--ads~~ilC~~yk~~~vqvwsl~Qp   81 (447)
T KOG4497|consen   14 CSFSP----CGNYIASLSRYRLVIRDSETLQLHQLFLC------LDKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQP   81 (447)
T ss_pred             eeECC----CCCeeeeeeeeEEEEeccchhhHHHHHHH------HHHhhheeee--ccceeeeeeeeccceEEEEEeecc
Confidence            57999    89999999988888888777665544432      2345557787  666646777788999999999999


Q ss_pred             ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117          119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  198 (346)
                      +-...+......+..+.|+|++..+|.+...|-.|.+|.+.+.+....-.    ....+..++|+| ++++.+.++.-..
T Consensus        82 ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~----pK~~~kg~~f~~-dg~f~ai~sRrDC  156 (447)
T KOG4497|consen   82 EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH----PKTNVKGYAFHP-DGQFCAILSRRDC  156 (447)
T ss_pred             eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc----cccCceeEEECC-CCceeeeeecccH
Confidence            98888988889999999999444677788889999999998766544322    344568899998 8887776654321


Q ss_pred             ---EEEE-----------EccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEEEeecCe
Q 019117          199 ---VKIW-----------SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       199 ---i~iw-----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                         +.+.           ++.+   .....+.|.........-........+..| .-.+..+.|+  +++|++|+.|+.
T Consensus       157 kdyv~i~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~  233 (447)
T KOG4497|consen  157 KDYVQISSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM  233 (447)
T ss_pred             HHHHHHHhhHHHHHHHhcCCCc---ccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh
Confidence               1111           1111   001111111111110000000011111222 3568888998  789999999999


Q ss_pred             EEEEcCCCCCCCCCC---------------------------------------------------------cccccccc
Q 019117          262 IVLWEPKMKEQSPGE---------------------------------------------------------GTADILQK  284 (346)
Q Consensus       262 i~iwd~~~~~~~~~~---------------------------------------------------------~~~~~~~~  284 (346)
                      +|+-+--+.+...+.                                                         ....+...
T Consensus       234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD  313 (447)
T KOG4497|consen  234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD  313 (447)
T ss_pred             hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence            998765443320000                                                         00001112


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcC--CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNR--EGKIFVWELQSSPPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg  344 (346)
                      +..+...+.-++|++|.  .++++-.+  -+.+-+||++..+.-.+.....++....|.|..
T Consensus       314 ~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~  373 (447)
T KOG4497|consen  314 FPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR  373 (447)
T ss_pred             CCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC
Confidence            22344567889999998  57776543  457999999988765555555667777777753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.8e-15  Score=129.05  Aligned_cols=227  Identities=15%  Similarity=0.062  Sum_probs=142.5

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcce--eeeeccCCCceEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKL--HKSFVGHGDSINEI  134 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~  134 (346)
                      |.+||..... ...+..     +...+...+|+  |+|+ .|+..+.+   ..|.+||+.+++.  +..+.+|   ...+
T Consensus       186 i~i~d~dg~~-~~~lt~-----~~~~v~~p~wS--PDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~  253 (429)
T PRK01742        186 VRVADYDGFN-QFIVNR-----SSQPLMSPAWS--PDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAP  253 (429)
T ss_pred             EEEECCCCCC-ceEecc-----CCCccccceEc--CCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCce
Confidence            8888865443 333332     44556666666  9998 77776543   4799999988754  3333333   3468


Q ss_pred             EEeCCCCceEEEe-eCCCCEEEE--ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEcccccee
Q 019117          135 RTQPLKPSLVVSA-SKDESVRLW--NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTY  210 (346)
Q Consensus       135 ~~~~~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~  210 (346)
                      +|+| +++.|+.+ +.+|.+.||  |+.+++. ..+.   .+...+....|+| ++..|+ ++..++...+|++..... 
T Consensus       254 ~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt---~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~-  326 (429)
T PRK01742        254 AFSP-DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT---SGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGG-  326 (429)
T ss_pred             eECC-CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec---cCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCC-
Confidence            9999 77776665 468876655  6655553 4444   4666788999999 666554 555678899998765211 


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  288 (346)
                                           ....+ .+..  .+..|+  |++++..+.++ +.+||+.+++..       .+.  ...
T Consensus       327 ---------------------~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-------~lt--~~~  372 (429)
T PRK01742        327 ---------------------GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-------VLS--STF  372 (429)
T ss_pred             ---------------------CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-------Eec--CCC
Confidence                                 00111 1222  234565  78888877765 556999876521       110  111


Q ss_pred             CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC--CCCcceeee-eeeeEEEEEecCC
Q 019117          289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIAR-LICFSLHVKYNPQ  343 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~~~~~~~~~~spd  343 (346)
                        ......|+||+  ++|+.++.++.+.+|++.  ++....... ..+.+...+|||-
T Consensus       373 --~~~~~~~sPdG--~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        373 --LDESPSISPNG--IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --CCCCceECCCC--CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence              22457899999  688888888988888764  354433332 3455778999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=2e-14  Score=118.86  Aligned_cols=284  Identities=15%  Similarity=0.108  Sum_probs=165.2

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..+....+......-..++|+|    +|+++.+++.|+ |.++|+.+.+.+..++.      +.....+++  ++||+ +
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------G~~~~~i~~--s~DG~-~   91 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLATGKVVATIKV------GGNPRGIAV--SPDGK-Y   91 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-------SSEEEEEEE----TTT-E
T ss_pred             CCeEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCcccEEEEEec------CCCcceEEE--cCCCC-E
Confidence            3555666655444444577888    788888888777 99999999998888873      333444554  49999 6


Q ss_pred             EEEe-ecCCeEEEEEccCcceeeeeccC-------CCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCeeEE--Eecc
Q 019117          101 LVAG-GINGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICIL--IFAG  169 (346)
Q Consensus       101 l~~~-~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~--~~~~  169 (346)
                      ++++ ...+.+.++|.++.+.++.+...       ...+..+..+| ... ++++.-+.+.|.+-|....+.+.  .+. 
T Consensus        92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-  169 (369)
T PF02239_consen   92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-  169 (369)
T ss_dssp             EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeec-
Confidence            6655 56899999999999988887643       34677888888 555 55555555888888877654432  332 


Q ss_pred             cCCCCcceEEEEecCCCCcEEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc--eEEE
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCN  246 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~  246 (346)
                         .........|+| ++++++. ......|-++|..+.+.........         .....+...+ .|...  +...
T Consensus       170 ---~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~---------~p~~~~~~~~-php~~g~vw~~  235 (369)
T PF02239_consen  170 ---VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK---------KPHPGPGANF-PHPGFGPVWAT  235 (369)
T ss_dssp             -----TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS---------SBEETTEEEE-EETTTEEEEEE
T ss_pred             ---ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccc---------cccccccccc-cCCCcceEEee
Confidence               456677899999 7666554 5667789999988743321111000         0000111111 23322  2222


Q ss_pred             EecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCC
Q 019117          247 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQS  322 (346)
Q Consensus       247 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~  322 (346)
                      .-.+...++.-....+.+||..+.+         .++++.....+ ..+..+|++  +++.+.    ...+.|.++|.++
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~~wk---------vv~~I~~~G~g-lFi~thP~s--~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDYAWK---------VVKTIPTQGGG-LFIKTHPDS--RYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTTBTS---------EEEEEE-SSSS---EE--TT---SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             ccccceecccccCCccccchhhcCe---------EEEEEECCCCc-ceeecCCCC--ccEEeeccCCCCCceEEEEECcC
Confidence            2123333333344466678888776         67777776666 778889999  677776    5668999999999


Q ss_pred             CCcceeeeeeee--EEEEEecCCCCC
Q 019117          323 SPPVLIARLICF--SLHVKYNPQSVY  346 (346)
Q Consensus       323 ~~~~~~~~~~~~--~~~~~~spdg~~  346 (346)
                      .+....+.....  +.++.|+|||++
T Consensus       304 l~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  304 LKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             TEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             cceeEEEeccCCCcEeccEECCCCCE
Confidence            865554443333  889999999974

...

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=5.1e-17  Score=138.17  Aligned_cols=198  Identities=21%  Similarity=0.413  Sum_probs=151.0

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      |...|+|..|.  ..|. ++++|+.|..++||.+.++.++...++|.+.|+.++.+. +...+++++.|..|++|.+.++
T Consensus       189 H~naVyca~fD--rtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  189 HRNAVYCAIFD--RTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             hhhheeeeeec--cccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCC
Confidence            67788887776  7898 999999999999999999999999999999999999998 8889999999999999999999


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      .++..+.   +|++.|++++|+|     ..+.+.||++++||.+- ...       ....+..+.             ..
T Consensus       265 ~pvsvLr---ghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~-------y~prp~~~~-------------~~  316 (1113)
T KOG0644|consen  265 APVSVLR---GHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRI-------YVPRPLKFT-------------EK  316 (1113)
T ss_pred             chHHHHh---ccccceeeeccCc-----cccCCCCCceEeccccccccc-------cCCCCCCcc-------------cc
Confidence            9999999   8999999999999     33778899999999982 111       011111111             11


Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      +.+.++.|.  +..+++++.|+.-..|.+....               .+...+.-+.++.|.. .+.++.-.+-.+.+|
T Consensus       317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vw  380 (1113)
T KOG0644|consen  317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLS-SIVVTARNDHRLCVW  380 (1113)
T ss_pred             cceeeeeccccccccccccCCcccccchhhHhh---------------hhccceEEEecccccc-ccceeeeeeeEeeee
Confidence            334455554  7789999999998888765322               1122222233333332 466777778889999


Q ss_pred             EcCCCCcce
Q 019117          319 ELQSSPPVL  327 (346)
Q Consensus       319 d~~~~~~~~  327 (346)
                      ++.+|....
T Consensus       381 nl~~g~l~H  389 (1113)
T KOG0644|consen  381 NLYTGQLLH  389 (1113)
T ss_pred             ecccchhhh
Confidence            999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.69  E-value=2.2e-15  Score=115.74  Aligned_cols=213  Identities=18%  Similarity=0.259  Sum_probs=157.6

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .+..+...++||.+.|++...-|    ...-+.+.+.|. ++||--. .++....+..+    -..++.  +.++.++..
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~----mP~~~~--~~~y~~e~~   81 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY----MPSPCS--AMEYVSESR   81 (404)
T ss_pred             cchhhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEEeccccccCchhhhh----CCCCce--Eeeeeccce
Confidence            45567778899999999988888    446788888888 9999644 34444444422    223344  444447777


Q ss_pred             cEEEEeecCCeEEEEEcc----CcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--------------
Q 019117           99 PFLVAGGINGIIRVIDVS----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--------------  160 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------  160 (346)
                       .|+.|-.+|++.-+.+.    .....+.+..|...+..+-|+. ...++++.+.|..+.---.+.              
T Consensus        82 -~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t  159 (404)
T KOG1409|consen   82 -RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS  159 (404)
T ss_pred             -EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence             89999999999888653    3345667778999999999987 677888877776543111111              


Q ss_pred             ---------------------------CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeee
Q 019117          161 ---------------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK  213 (346)
Q Consensus       161 ---------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  213 (346)
                                                 -.++..+.   +|.+.+++++|.| ...++++|..|..+.+||+...      
T Consensus       160 ~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~---~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~------  229 (404)
T KOG1409|consen  160 ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFN---GHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR------  229 (404)
T ss_pred             CCceeeEEEEecccccceEEEEEeecCCceEEEEc---CcccceEEEEEcC-CCcEEEeccccCceEEEeccCC------
Confidence                                       12233444   7999999999998 8899999999999999999873      


Q ss_pred             ceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117          214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                                      ......+.+|.+.|..+.+.  -+.+.+++.||.|.+|+.+...
T Consensus       230 ----------------~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  230 ----------------KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ----------------cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence                            23455778899989888876  6789999999999999987543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.6e-14  Score=110.01  Aligned_cols=248  Identities=17%  Similarity=0.216  Sum_probs=158.3

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ...+..++|++    .-..||++..|. |++|+-.. .....++.    ..+..|.+++|-  |.+...|+.|...| |.
T Consensus        98 ~~dlr~~aWhq----H~~~fava~nddvVriy~kss-t~pt~Lks----~sQrnvtclawR--PlsaselavgCr~g-Ic  165 (445)
T KOG2139|consen   98 EIDLRGVAWHQ----HIIAFAVATNDDVVRIYDKSS-TCPTKLKS----VSQRNVTCLAWR--PLSASELAVGCRAG-IC  165 (445)
T ss_pred             hcceeeEeech----hhhhhhhhccCcEEEEeccCC-CCCceecc----hhhcceeEEEec--cCCcceeeeeecce-eE
Confidence            34578899998    334566665555 99999555 44444443    366789999998  66655788888655 89


Q ss_pred             EEEccCc----c----------eeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117          112 VIDVSNE----K----------LHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus       112 iwd~~~~----~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                      +|.....    +          .+...++| .+|+++.|++ ++..+++++ .|..|.|||..++..+....   .-.+.
T Consensus       166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg  240 (445)
T KOG2139|consen  166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGG  240 (445)
T ss_pred             EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccc---cCCCc
Confidence            9986431    1          12223445 6899999999 777777776 46789999999988776553   25677


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      +.-+.|+| ++.+|+.+.-|+..++|.......                       ......-++.|..-.|+  |.+|+
T Consensus       241 ~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt-----------------------~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  241 FSLLKWSP-DGDVLFAATCDAVFRLWQENQSWT-----------------------KERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             eeeEEEcC-CCCEEEEecccceeeeehhcccce-----------------------ecceeccCCceeeeeecCCCCEEE
Confidence            88999999 999999999999999996655221                       11122234477777887  55443


Q ss_pred             -EEeecCeEEEEcCCCCCCCCCCc------------cccccccccC---CCcCeeEEEEeecCCcceEEEEcCCC-----
Q 019117          255 -SKSVDNEIVLWEPKMKEQSPGEG------------TADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREG-----  313 (346)
Q Consensus       255 -~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg-----  313 (346)
                       +.+..  -++|.+.-........            ....+....+   -.+.+.+++|.|.|  .+||+.-..+     
T Consensus       297 f~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG--eyLav~fKg~~~v~~  372 (445)
T KOG2139|consen  297 FACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG--EYLAVIFKGQSFVLL  372 (445)
T ss_pred             EEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC--CEEEEEEcCCchhhh
Confidence             33333  2344332221110000            0000011111   24678999999999  6788765433     


Q ss_pred             ---cEEEEEcCCCCc
Q 019117          314 ---KIFVWELQSSPP  325 (346)
Q Consensus       314 ---~i~iwd~~~~~~  325 (346)
                         .|.+||.....+
T Consensus       373 ~k~~i~~fdtr~sp~  387 (445)
T KOG2139|consen  373 CKLHISRFDTRKSPP  387 (445)
T ss_pred             hhhhhhhhcccccCc
Confidence               366777765543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=6.1e-15  Score=125.84  Aligned_cols=219  Identities=13%  Similarity=0.101  Sum_probs=139.9

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      +.+..|...+...+|+|    +|+.||.++.+    .|.+||+.++.... +..+.     ......+|  +|||+ .|+
T Consensus       197 ~~lt~~~~~v~~p~wSP----DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~-----g~~~~~~w--SPDG~-~La  263 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSP----DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFR-----GHNGAPAF--SPDGS-RLA  263 (429)
T ss_pred             eEeccCCCccccceEcC----CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCC-----CccCceeE--CCCCC-EEE
Confidence            34567888899999999    78888877543    29999987765422 22211     11223445  59998 666


Q ss_pred             Ee-ecCCeEEEE--EccCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCCEEEEecCCC-eeEEEecccCCCCcce
Q 019117          103 AG-GINGIIRVI--DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTG-ICILIFAGAGGHRNEV  177 (346)
Q Consensus       103 ~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v  177 (346)
                      .+ +.+|.+.||  |+.+++. ..+..+...+....|+| ++..|+ ++..++...||++... .....+.    +..  
T Consensus       264 ~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~--  335 (429)
T PRK01742        264 FASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG--  335 (429)
T ss_pred             EEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--
Confidence            65 467876665  5555553 44555777788999999 666655 4456788888887532 2222222    333  


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      ....|+| +++.++..+.++ +.+||+.+....                        .+... ....+..|+  |++|+.
T Consensus       336 ~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~------------------------~lt~~-~~~~~~~~sPdG~~i~~  388 (429)
T PRK01742        336 YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTE------------------------VLSST-FLDESPSISPNGIMIIY  388 (429)
T ss_pred             CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeE------------------------EecCC-CCCCCceECCCCCEEEE
Confidence            4578999 888887777655 556898773211                        00000 011234565  889999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                      ++.++.+.+|++....       ......+..|.+.+...+|+|-
T Consensus       389 ~s~~g~~~~l~~~~~~-------G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        389 SSTQGLGKVLQLVSAD-------GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEcCCCceEEEEEECC-------CCceEEccCCCCCCCCcccCCC
Confidence            9999988888764311       1156666777778888899874

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.66  E-value=3.2e-14  Score=107.21  Aligned_cols=259  Identities=14%  Similarity=0.150  Sum_probs=170.6

Q ss_pred             CCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           33 KRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      .+.++.+.|.-. +.+|. .++-+...+ |.+|..........+...... .-..+.+++..+++.+. .++++..+|.+
T Consensus        69 ts~~~dm~w~~~-~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~-ki~~~~~lslD~~~~~~-~i~vs~s~G~~  145 (339)
T KOG0280|consen   69 TSTEFDMLWRIR-ETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK-KISVVEALSLDISTSGT-KIFVSDSRGSI  145 (339)
T ss_pred             ccccceeeeeec-cCCccceeeeccccceEEEEeeccceeeeeecccchh-hhhheeeeEEEeeccCc-eEEEEcCCCcE
Confidence            455777788752 23455 455555555 888887665555555443221 11222356666668888 78899889999


Q ss_pred             EEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEEecccCCCCcceEEEEecCCCC
Q 019117          111 RVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       111 ~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      .+-+......  ++..+.|.-++...+|+..+++++.+|++|+.+..||++. ++.+..  ...-|...|.++.-+|..+
T Consensus       146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~~~~  223 (339)
T KOG0280|consen  146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSPPKP  223 (339)
T ss_pred             EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCCCCC
Confidence            9666555543  4478899999999999988889999999999999999993 333332  2225889999999998788


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVL  264 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~i  264 (346)
                      .++++|+.|-.|++||.|+...                      |++... -.+.|..+.++   ...++.++.-+-.+|
T Consensus       224 ~~I~TGsYDe~i~~~DtRnm~k----------------------Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki  280 (339)
T KOG0280|consen  224 TYIATGSYDECIRVLDTRNMGK----------------------PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKI  280 (339)
T ss_pred             ceEEEeccccceeeeehhcccC----------------------ccccCc-cccceEEEEecchhhhHHHHHHHhcCceE
Confidence            9999999999999999997432                      222222 12567777766   223344444444677


Q ss_pred             EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEE-EEEcCCCCc
Q 019117          265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIF-VWELQSSPP  325 (346)
Q Consensus       265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~-iwd~~~~~~  325 (346)
                      -+.......    ....+...+.|.+-...-.|..-.  .+|++|+ .|..++ +|-.-++++
T Consensus       281 ~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~--~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  281 LDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKD--SFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             EEecccccc----hheeeeccccccceeecccccccc--ceeeeeeccccceeeeeeeccCCc
Confidence            776655321    111344555666655556663222  4688876 577755 786666553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.2e-14  Score=118.37  Aligned_cols=231  Identities=10%  Similarity=0.020  Sum_probs=138.7

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee---cCCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---INGIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      |.++|...... +.+..     ....+...+|+  |||+ .|+..+   .+..|.+|++.+++.... ....+.+....|
T Consensus       181 l~~~d~dg~~~-~~lt~-----~~~~~~~p~wS--PDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~  250 (429)
T PRK03629        181 LRVSDYDGYNQ-FVVHR-----SPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAF  250 (429)
T ss_pred             EEEEcCCCCCC-EEeec-----CCCceeeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEE
Confidence            77888654433 22321     33455556666  9998 666543   245799999988764332 222333457899


Q ss_pred             eCCCCceEEE-eeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEE--cccccee
Q 019117          137 QPLKPSLVVS-ASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWS--MKEFWTY  210 (346)
Q Consensus       137 ~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd--~~~~~~~  210 (346)
                      +| +++.|+. .+.+|  .|.+||+.+++......    +...+....|+| +++.|+..+. ++...+|.  +....  
T Consensus       251 SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~--  322 (429)
T PRK03629        251 SP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA--  322 (429)
T ss_pred             CC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEccC----CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC--
Confidence            99 6766654 44455  48899998876554433    445678899999 7776655544 45556664  43311  


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                            ...+..+........|+  |++++..+.+   ..|.+||+.+++.          ..+
T Consensus       323 ----------------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----------~~L  370 (429)
T PRK03629        323 ----------------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------QVL  370 (429)
T ss_pred             ----------------------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------EEe
Confidence                                  11222233334456666  7777766543   3588899887652          111


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCCc---EEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREGK---IFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      ... .......|+|||  ++|+..+.++.   +.++++..+.........+.+...+|+|-
T Consensus       371 t~~-~~~~~p~~SpDG--~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        371 TDT-FLDETPSIAPNG--TMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCC-CCCCCceECCCC--CEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            111 122356899999  56777776654   77888855544333344566778999983

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=2.1e-13  Score=103.97  Aligned_cols=169  Identities=17%  Similarity=0.281  Sum_probs=128.5

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+++.++ ....+|.+|.+.+      ..+++.-.+.|.||... ..+.+..+.....   ....  ++.+...+.. +|
T Consensus        85 ~~~i~el-~f~~~I~~V~l~r------~riVvvl~~~I~VytF~~n~k~l~~~et~~N---PkGl--C~~~~~~~k~-~L  151 (346)
T KOG2111|consen   85 ERCIIEL-SFNSEIKAVKLRR------DRIVVVLENKIYVYTFPDNPKLLHVIETRSN---PKGL--CSLCPTSNKS-LL  151 (346)
T ss_pred             CcEEEEE-EeccceeeEEEcC------CeEEEEecCeEEEEEcCCChhheeeeecccC---CCce--EeecCCCCce-EE
Confidence            3444443 2567899999986      78888888999999987 3445555544321   1222  3333223333 44


Q ss_pred             EE-eecCCeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCC-EEEEecCCCeeEEEecccCCCCcce
Q 019117          102 VA-GGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDES-VRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       102 ~~-~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      |. |-.-|.|+|-|+...+.  ...+.+|...|.|++.+. .+..+||+|..|+ |+|||..+|+.+.+++.. .....|
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~i  229 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADI  229 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheE
Confidence            44 44569999999977665  477889999999999999 8999999999997 699999999999999853 245689


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      .+++|+| +..+|++++..|+++||.++..
T Consensus       230 y~iaFSp-~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  230 YCIAFSP-NSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence            9999999 9999999999999999999873

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-14  Score=111.86  Aligned_cols=267  Identities=18%  Similarity=0.222  Sum_probs=169.1

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-----eeeEeeeecC-------CCccceEEEEEEEcCCCCc
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-----IAALQSYVDE-------DKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-----~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~   99 (346)
                      .+-|.+|.|..    +|.+||+|..+| |.+|.-.....     ...++.+..+       .-.+.|..+.|....+.. 
T Consensus        25 adiis~vef~~----~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-   99 (433)
T KOG1354|consen   25 ADIISAVEFDH----YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-   99 (433)
T ss_pred             hcceeeEEeec----ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-
Confidence            45688999998    899999999998 88887543321     1222222111       124678888898544445 


Q ss_pred             EEEEeecCCeEEEEEccCcce-----------------------------------eeee-ccCCCceEEEEEeCCCCce
Q 019117          100 FLVAGGINGIIRVIDVSNEKL-----------------------------------HKSF-VGHGDSINEIRTQPLKPSL  143 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~~  143 (346)
                      .++....|.+|++|.+.....                                   .+.+ .+|+--|+++.++. +...
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et  178 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKET  178 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccce
Confidence            666777899999998743211                                   1111 24777899999998 7777


Q ss_pred             EEEeeCCCCEEEEecCCCeeEEEecccCCC-----CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117          144 VVSASKDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       144 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  218 (346)
                      ++++. |=.|.+|+++-......+.....+     ..-|++..|+|...++++-.+..|+|++.|++....-......+.
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            77754 688999998743322222111122     356889999997788888889999999999996211100000000


Q ss_pred             CCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-------
Q 019117          219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-------  289 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------  289 (346)
                      .       ...+....-+..--..|..+.|+  |+++++-.. -+|++||++....        ++..++.|.       
T Consensus       258 e-------pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~--------pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  258 E-------PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK--------PVETYPVHEYLRSKLC  321 (433)
T ss_pred             c-------ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC--------cceEEeehHhHHHHHH
Confidence            0       00000111122223457778888  788887554 5899999965442        333333332       


Q ss_pred             -----c---CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          290 -----C---DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       290 -----~---~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                           .   .-..++|+-++  .++++|+..+.++++++..|.
T Consensus       322 ~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHhhccchhheeEEEEcCCc--ceEecccccceEEEecCCCCc
Confidence                 1   12456788777  799999999999999977665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.3e-13  Score=104.77  Aligned_cols=269  Identities=13%  Similarity=0.123  Sum_probs=158.2

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceee---------eEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIA---------ALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      .+..|+|++|-|.   .+.-|+.|...+|.+|.........         ..+.+..+.| ..|+.+.|.  +||. .++
T Consensus       139 sQrnvtclawRPl---saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn--~dgt-~l~  211 (445)
T KOG2139|consen  139 SQRNVTCLAWRPL---SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN--EDGT-ILV  211 (445)
T ss_pred             hhcceeEEEeccC---CcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEc--CCCC-EEe
Confidence            3567999999994   4579999999999999865322111         1222233333 677888887  8898 777


Q ss_pred             Eeec-CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          103 AGGI-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       103 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      +++. |..|.|||.+++..+.......+.+.-+.|+| ++.+|+++.-|+..++|+...........   --.+.|...+
T Consensus       212 tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtac  287 (445)
T KOG2139|consen  212 TASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTAC  287 (445)
T ss_pred             ecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceeccee---ccCCceeeee
Confidence            7764 67899999999987766655667899999999 88999999999999999654332222222   2445999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE---EeecccceEEEEec--CCEEEEE
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI---ASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      |+|.+..+|++++.  .-++|.+........... .............+. +..   ...--+.+.+++|+  |.+|++.
T Consensus       288 WspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~-~~~~k~~lliaDL~e-~ti~ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  288 WSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLR-PQSIKRVLLIADLQE-VTICAGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             ecCCCCEEEEEEcC--CceEEEEeecCCCccccC-cccceeeeeeccchh-hhhhcCcccccCccceeeECCCCCEEEEE
Confidence            99955556666664  445555543211111000 000000000000000 000   01123567889998  8898887


Q ss_pred             eecC--------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC-CcceEEEEcCCCcEEEEEcC
Q 019117          257 SVDN--------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF-HYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       257 ~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~l~~~~~dg~i~iwd~~  321 (346)
                      -..+        .|.+||.+..-.....     ...+.+. .....++|+|.. ++.+|..+=..|.+.-|++.
T Consensus       364 fKg~~~v~~~k~~i~~fdtr~sp~vels-----~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  364 FKGQSFVLLCKLHISRFDTRKSPPVELS-----YCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EcCCchhhhhhhhhhhhcccccCceEEE-----ecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            5433        3666776643210000     0011111 124556777643 22466666566777766653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.7e-14  Score=115.65  Aligned_cols=269  Identities=12%  Similarity=0.042  Sum_probs=178.0

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      +|...-+.|..+|    ||+++.+.+. .- |++||+.....  .+..+.   ..+.|...-++  .|-. .++.-..|.
T Consensus        49 e~p~ast~ik~s~----DGqY~lAtG~YKP~ikvydlanLSL--KFERhl---Dae~V~feiLs--DD~S-K~v~L~~DR  116 (703)
T KOG2321|consen   49 EMPTASTRIKVSP----DGQYLLATGTYKPQIKVYDLANLSL--KFERHL---DAEVVDFEILS--DDYS-KSVFLQNDR  116 (703)
T ss_pred             CCccccceeEecC----CCcEEEEecccCCceEEEEccccee--eeeecc---cccceeEEEec--cchh-hheEeecCc
Confidence            5777888999999    7777655544 43 99999875433  222221   11222222222  2333 455556677


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      .|.+... -|... .++ -...-.+++++.....+++.|+ ...|+-++++.|+.+..+.   ...+.++++..++ ...
T Consensus       117 ~IefHak-~G~hy-~~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~-~hg  188 (703)
T KOG2321|consen  117 TIEFHAK-YGRHY-RTR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINE-EHG  188 (703)
T ss_pred             eeeehhh-cCeee-eee-cCcCCccccccCCCccEEEeec-CcceEEEEccccccccccc---cccccceeeeecC-ccc
Confidence            7776542 23221 111 1223456666653444554444 4578889999999999998   4668999999998 888


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-----ceEEEEec--CCEEEEEeecCe
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-----YVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      +|++|+.+|.|.+||.+........                 ........|+.     .|+++.|+  |-.+++|..+|.
T Consensus       189 Lla~Gt~~g~VEfwDpR~ksrv~~l-----------------~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~  251 (703)
T KOG2321|consen  189 LLACGTEDGVVEFWDPRDKSRVGTL-----------------DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS  251 (703)
T ss_pred             eEEecccCceEEEecchhhhhheee-----------------ecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence            9999999999999999983211000                 00111222333     39999998  668999999999


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEec
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYN  341 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s  341 (346)
                      |.|||+++.++        .+..-.+..-+|..+.|-+.++...+++. ....++|||-.+|++.........++.+++-
T Consensus       252 v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~  322 (703)
T KOG2321|consen  252 VLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFV  322 (703)
T ss_pred             EEEEEcccCCc--------eeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeee
Confidence            99999999874        33333344568888999877543556654 4568999999999987777776667888887


Q ss_pred             CCCC
Q 019117          342 PQSV  345 (346)
Q Consensus       342 pdg~  345 (346)
                      |++.
T Consensus       323 p~sG  326 (703)
T KOG2321|consen  323 PGSG  326 (703)
T ss_pred             cCCc
Confidence            7753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=5.6e-14  Score=109.87  Aligned_cols=202  Identities=13%  Similarity=0.096  Sum_probs=147.7

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc----eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .....+|..++..     ++.+++..+++.+.+|....+.    .+..+.      ....+..+.-.  +....++++|+
T Consensus       102 ~l~~~~I~gl~~~-----dg~Litc~~sG~l~~~~~k~~d~hss~l~~la------~g~g~~~~r~~--~~~p~Iva~GG  168 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA-----DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA------TGPGLYDVRQT--DTDPYIVATGG  168 (412)
T ss_pred             ccccccccchhhc-----CCEEEEEecCCcEEEEeccCCccccccceeee------cCCceeeeccC--CCCCceEecCc
Confidence            4455667777765     4555555555559999987443    222222      22334434433  44554777799


Q ss_pred             cC--CeEEEEEccCcceeeeeccC---------CCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCC-eeEEEecccC
Q 019117          106 IN--GIIRVIDVSNEKLHKSFVGH---------GDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTG-ICILIFAGAG  171 (346)
Q Consensus       106 ~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~  171 (346)
                      ..  ..+.|||+.+.+.+..-+.-         .-.++++.|-+ +  ...|++++.-+.|++||.+.+ +++..+.   
T Consensus       169 ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---  244 (412)
T KOG3881|consen  169 KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---  244 (412)
T ss_pred             hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEec---
Confidence            88  89999999988665543321         12567899988 6  789999999999999999865 5677776   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      -.+.+++++...| +++++++|..-+.+..||++....                      ....+.+-.+.|+++..+  
T Consensus       245 ~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl----------------------~g~~~kg~tGsirsih~hp~  301 (412)
T KOG3881|consen  245 FLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL----------------------LGCGLKGITGSIRSIHCHPT  301 (412)
T ss_pred             cccCcceeeeecC-CCcEEEEecccchhheecccCcee----------------------eccccCCccCCcceEEEcCC
Confidence            4678999999999 999999999999999999998322                      222356667788888887  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCC
Q 019117          250 GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      ..+++++|-|..|||+|+.+.+
T Consensus       302 ~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  302 HPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             CceEEeeccceeEEEeecccch
Confidence            4599999999999999999865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-13  Score=122.37  Aligned_cols=285  Identities=16%  Similarity=0.068  Sum_probs=177.2

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc--CceeeeEeeeecCCCc-c-ceEEEEEEEcCC
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GGVIAALQSYVDEDKE-E-SFYTVSWACNVD   96 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~--~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~   96 (346)
                      .++...++..-..++.++...+    .++.+|.++.|| |.+.++..  .......+......+. + .|...++.....
T Consensus      1087 s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1087 SARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred             eeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccccc
Confidence            4444455544567888888888    778999999999 88888765  2222222222212122 2 223333332222


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      . ..|+.+...+.|..||+........++  ...+.|++++.+| .+++++.|...|.+.+||++-+.++..+..  ++.
T Consensus      1163 S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~ 1238 (1431)
T KOG1240|consen 1163 S-HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PAR 1238 (1431)
T ss_pred             c-eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccC--ccc
Confidence            2 378888889999999998876555443  2457899999999 888999999999999999999988888764  456


Q ss_pred             cceEEEEecCCCC--cEEEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          175 NEVLSVDFHPSDI--YRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       175 ~~v~~~~~~~~~~--~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      .+++.+..+|...  ...++++  ..+.|.+|++.++......-..  .....+.......  .....+.-......+. 
T Consensus      1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s--~~~p~ls~~~Ps~--~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS--DGAPILSYALPSN--DARKPDSLAGISCGVCE 1314 (1431)
T ss_pred             CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC--CCCcchhhhcccc--cCCCCCcccceeeeccc
Confidence            7888888876332  4455544  4678999999985432221111  0000000000000  0000111111222222 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCC--------------------Cc----------------c------cccc----
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPG--------------------EG----------------T------ADIL----  282 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------~~----------------~------~~~~----  282 (346)
                       +..+++|+.|..|+.||....+....                    ..                .      ...+    
T Consensus      1315 ~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~ 1394 (1431)
T KOG1240|consen 1315 KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGP 1394 (1431)
T ss_pred             CCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCC
Confidence             67999999999999999876543200                    00                0      0000    


Q ss_pred             -ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          283 -QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       283 -~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                       ..-..|...|+++++....+ .+|++++.||.|+||.
T Consensus      1395 ~~ps~~H~d~Itdma~~~~~q-~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1395 SDPSTYHHDPITDMATLKSEQ-PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCCcccccchhhhhhhhccCc-cEEEEecCCCeeeecC
Confidence             01122667899998888775 6999999999999994

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.7e-14  Score=117.27  Aligned_cols=240  Identities=16%  Similarity=0.207  Sum_probs=170.5

Q ss_pred             CccEEEEEcCCcEEEEEeccCceee-eEeeeecCCCccceEEEEEE---EcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIA-ALQSYVDEDKEESFYTVSWA---CNVDGIPFLVAGGINGIIRVIDVSNEKLHKS  123 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  123 (346)
                      .|+.|+-.-.+.+.+|+...+..+. .+.....  ......+-.|.   -.+.+- -++.|-..|.|.+.|....+..+.
T Consensus       134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y--~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq~idp~~~~~skl  210 (636)
T KOG2394|consen  134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKREY--KGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQLIDPINFEVSKL  210 (636)
T ss_pred             CCCEEEEecCCeEEEEEccCcchhccchhhhcc--cCCCCceecccccccCCCCc-ceEEeeccCceEEecchhhHHHHh
Confidence            6778888877789999877432221 1111111  12222333332   124555 677888889999999766433222


Q ss_pred             ec----cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--------------C--------------eeEEEecccC
Q 019117          124 FV----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--------------G--------------ICILIFAGAG  171 (346)
Q Consensus       124 ~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~--------------~~~~~~~~~~  171 (346)
                      +.    -....|+++.|-|.+...|+.+..+|.+.++|...              +              .++..+.   
T Consensus       211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~---  287 (636)
T KOG2394|consen  211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH---  287 (636)
T ss_pred             hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE---
Confidence            21    13478999999997778888999999999997641              1              1111111   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      --.+.|..++|+| ++.+|++.+.||.++|||..+                       +..+-.+...-+...|++|+  
T Consensus       288 ~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt-----------------------~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  288 IGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDT-----------------------QELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             eccccccceeEcC-CCceEEEEecCceEEEeeccH-----------------------HHHHHHHHhhccceEEEEEcCC
Confidence            1235788999999 999999999999999999998                       23333455566789999999  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec-----------------------------
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD-----------------------------  300 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------------  300 (346)
                      |+++++|++|.-|.||.+...+         .+..-.+|..+|..++|.|-                             
T Consensus       344 GKyIvtGGEDDLVtVwSf~erR---------VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~  414 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERR---------VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN  414 (636)
T ss_pred             ccEEEecCCcceEEEEEeccce---------EEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence            8999999999999999999877         78888899999999999831                             


Q ss_pred             --CC---------------cceEEEEcCCCcEEEEEcCCCCcc
Q 019117          301 --FH---------------YNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       301 --~~---------------~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                        +.               .-.+.+.+.|-.+.+||+....+.
T Consensus       415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             CCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence              00               015778889999999999876543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.5e-13  Score=117.63  Aligned_cols=230  Identities=11%  Similarity=0.012  Sum_probs=137.7

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---CCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      |.+||... ...+.+..     +...+...+|+  |||+ .|+..+.   +..|.+||+.+++... +....+.....+|
T Consensus       186 l~i~D~~g-~~~~~lt~-----~~~~v~~p~wS--pDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~  255 (433)
T PRK04922        186 LQVADSDG-YNPQTILR-----SAEPILSPAWS--PDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSF  255 (433)
T ss_pred             EEEECCCC-CCceEeec-----CCCccccccCC--CCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceE
Confidence            88888643 33333332     34456556665  9998 7777653   3469999998876533 3334445568899


Q ss_pred             eCCCCceE-EEeeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCe--EEEEEcccccee
Q 019117          137 QPLKPSLV-VSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT--VKIWSMKEFWTY  210 (346)
Q Consensus       137 ~~~~~~~l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~~  210 (346)
                      +| +++.+ ++.+.+|  .|.+||+.+++.. .+.   .+.......+|+| +++.|+..+ .+|.  |.++|+...+  
T Consensus       256 Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~--  327 (433)
T PRK04922        256 SP-DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT---NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS--  327 (433)
T ss_pred             CC-CCCEEEEEEeCCCCceEEEEECCCCCeE-ECc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--
Confidence            99 66655 4556655  5999999887654 343   3555556789999 676665544 4555  4455554421  


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                            ...+..+........|+  |++++..+.++   .|.+||+.+++..          .+
T Consensus       328 ----------------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~----------~L  375 (433)
T PRK04922        328 ----------------------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR----------TL  375 (433)
T ss_pred             ----------------------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----------EC
Confidence                                  11122222333456676  77777665433   6999999876521          11


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcC---CCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                      .. ........|+||+  ++++..+.   .+.|.++++..+.........+.+...+|+|
T Consensus       376 t~-~~~~~~p~~spdG--~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        376 TP-GSLDESPSFAPNG--SMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CC-CCCCCCceECCCC--CEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence            11 1123456899999  55555443   3468888886544322322345567788987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=7.6e-14  Score=121.91  Aligned_cols=188  Identities=16%  Similarity=0.210  Sum_probs=148.4

Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeeeccCCC----ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD----SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG  171 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  171 (346)
                      +.+ .++.+..+..+.+||...+.....+.....    ...-+-+++ +.-++++|+--+.|.+|+....+.-..+.   
T Consensus        98 e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~---  172 (967)
T KOG0974|consen   98 ENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLK---  172 (967)
T ss_pred             hcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceec---
Confidence            344 688888889999999988877666653221    222344455 67789999999999999987333333455   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  251 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  251 (346)
                      +|.+.|..+.++. ++.++++.+.|.++++|++.+.+.                      .....-+|+..|..+.|..+
T Consensus       173 GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~----------------------~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  173 GHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREV----------------------LGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             ccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccc----------------------cCcccccccceeEEEEeccc
Confidence            8999999999997 999999999999999999998321                      12356689999999999988


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      .+++++.|.+.++|+.+..+          +..+..|. ..|+.++..++.  ..+++++.|+.+++|++...
T Consensus       230 ~i~t~gedctcrvW~~~~~~----------l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQ----------LEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEeccceEEEEEecccce----------ehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhcc
Confidence            99999999999999766543          44666664 568999999888  78999999999999998764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.3e-13  Score=114.41  Aligned_cols=230  Identities=10%  Similarity=0.037  Sum_probs=142.2

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---CCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      |.++|.. +...+.+..     +...+...+|+  |||+ .|+..+.   +..|.+||+.+++.. .+..+.+.+...+|
T Consensus       184 l~~~d~d-g~~~~~lt~-----~~~~v~~p~wS--pDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~  253 (435)
T PRK05137        184 LAIMDQD-GANVRYLTD-----GSSLVLTPRFS--PNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEECCC-CCCcEEEec-----CCCCeEeeEEC--CCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence            7777764 333333332     44566666666  9998 7776653   468999999887653 34446667788999


Q ss_pred             eCCCCceE-EEeeCCCC--EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCC--eEEEEEcccccee
Q 019117          137 QPLKPSLV-VSASKDES--VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTY  210 (346)
Q Consensus       137 ~~~~~~~l-~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~  210 (346)
                      +| +++.| ++.+.++.  |.+||+.+++.. .+.   .+........|+| +++.++..+ .+|  .|.++|+....  
T Consensus       254 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt---~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~--  325 (435)
T PRK05137        254 SP-DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT---DSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN--  325 (435)
T ss_pred             CC-CCCEEEEEEecCCCceEEEEECCCCceE-Ecc---CCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC--
Confidence            99 66655 56666665  777788877654 344   3555677899999 776666554 344  57777765521  


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                            ...+..+...+....|+  |+.|+..+.+   ..|.+||+.++..          ..+
T Consensus       326 ----------------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~l  373 (435)
T PRK05137        326 ----------------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RIL  373 (435)
T ss_pred             ----------------------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----------Eec
Confidence                                  12222234445556676  7777766543   3688888765431          111


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcC-C-----CcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNR-E-----GKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      .. ...+....|+||++  .|+..+. .     ..|+++|+.++... .....+.+...+|+|-
T Consensus       374 t~-~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        374 TS-GFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNER-EVPTPGDASDPAWSPL  433 (435)
T ss_pred             cC-CCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCceE-EccCCCCccCcccCCC
Confidence            11 12456789999994  5544332 2     36888898776543 3333455667888874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.9e-14  Score=115.55  Aligned_cols=167  Identities=16%  Similarity=0.141  Sum_probs=126.8

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee-ccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEec
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~  158 (346)
                      .|.+.|..+.|.  ..|. .|++|+.|..|.+||+..++....+ .+|...|....|.|. +..-+++++.||.+++=.+
T Consensus       140 ~H~GcVntV~FN--~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  140 KHKGCVNTVHFN--QRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             CCCCccceeeec--ccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            477778777766  8898 9999999999999999998877666 479999999999885 3457899999999999877


Q ss_pred             CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      .....+...+....|.++|.-++.-|.....|.+++.|+.+.-+|++.......                    +.....
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--------------------~~cr~~  276 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--------------------FVCREA  276 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--------------------eeeecc
Confidence            644433333333369999999999997788999999999999999988332111                    111222


Q ss_pred             ccc---ceEEEEec---CCEEEEEeecCeEEEEcCCCC
Q 019117          239 HSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       239 ~~~---~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      +..   ....++.+   ...+++++.|..+++||.+..
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~  314 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI  314 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence            222   34455555   558999999999999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1e-12  Score=112.13  Aligned_cols=232  Identities=12%  Similarity=0.061  Sum_probs=134.4

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      +.++|. ++.....+..     +...+...+|+  |||+ .|+..+.+   ..|.+||+.+++... +....+.+...+|
T Consensus       178 L~~~D~-dG~~~~~l~~-----~~~~v~~p~wS--PDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~  247 (427)
T PRK02889        178 LQISDA-DGQNAQSALS-----SPEPIISPAWS--PDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAW  247 (427)
T ss_pred             EEEECC-CCCCceEecc-----CCCCcccceEc--CCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            666664 3333333322     34556666666  9998 77766532   469999998887543 3333455678999


Q ss_pred             eCCCCceEE-EeeCCCCEEEEec--CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeee
Q 019117          137 QPLKPSLVV-SASKDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVE  212 (346)
Q Consensus       137 ~~~~~~~l~-s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~  212 (346)
                      +| +++.|+ +.+.++...+|.+  ..+. ...+.   .+........|+| +++.|+.. ..++...+|.+.....   
T Consensus       248 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt---~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g---  318 (427)
T PRK02889        248 SP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLT---QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGG---  318 (427)
T ss_pred             CC-CCCEEEEEEccCCCceEEEEECCCCC-cEECC---CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCC---
Confidence            99 666554 6677887666654  4343 44444   3455566788999 77666544 4456777776643110   


Q ss_pred             eceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccccC
Q 019117          213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPV  287 (346)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~  287 (346)
                                         ....+..+........|+  |++++..+.++   .|.+||+.+++..          .+..
T Consensus       319 -------------------~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~----------~lt~  369 (427)
T PRK02889        319 -------------------AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT----------ALTD  369 (427)
T ss_pred             -------------------ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE----------EccC
Confidence                               011111122223345565  88888766554   6999999876521          1111


Q ss_pred             CCcCeeEEEEeecCCcceEEEEcC-CC--cEEEEEcCCCCcceeee-eeeeEEEEEecCC
Q 019117          288 PECDIWFIKFSCDFHYNAAAIGNR-EG--KIFVWELQSSPPVLIAR-LICFSLHVKYNPQ  343 (346)
Q Consensus       288 ~~~~v~~~~~s~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~-~~~~~~~~~~spd  343 (346)
                       ........|+||++  .|+..+. .|  .+++.++. +....... ..+.+...+|+|-
T Consensus       370 -~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        370 -TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             -CCCccCceECCCCC--EEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence             11235678999994  5555443 33  35566663 44333333 3355677899884

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.59  E-value=2.4e-12  Score=106.20  Aligned_cols=190  Identities=16%  Similarity=0.260  Sum_probs=152.7

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-----------------CCCcEEEEeecCCe
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-----------------DGIPFLVAGGINGI  109 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~~~~l~~~~~dg~  109 (346)
                      ...+||....|+ +++|+..+++....+.....  -.+...++.|....                 .+...++-|...|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            468999999888 99999998887666653221  22333444444221                 12337888899999


Q ss_pred             EEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          110 IRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       110 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.+|++..++....+.  .|.+.|.++.++. +-..|.+++.|+.+..|+....+.+..++   .....+.+++.+| ++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~-D~  156 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISP-DG  156 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcC-CC
Confidence            9999999999888775  6999999999998 88899999999999999999999999998   6788899999999 78


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-------CCEEEEE-eec
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSK-SVD  259 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~-~~d  259 (346)
                      ..+++++  +.|++||+.+                       ...+..+.+|...|+++.|-       |.+++++ ..+
T Consensus       157 ~~l~~as--~~ik~~~~~~-----------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~  211 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIET-----------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE  211 (541)
T ss_pred             CEEEecc--ceEEEEEccC-----------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence            8898887  6899999999                       56788999999999999995       4565554 456


Q ss_pred             CeEEEEcCCC
Q 019117          260 NEIVLWEPKM  269 (346)
Q Consensus       260 ~~i~iwd~~~  269 (346)
                      ..+.+|-...
T Consensus       212 r~i~~w~v~~  221 (541)
T KOG4547|consen  212 RGITVWVVEK  221 (541)
T ss_pred             cceeEEEEEc
Confidence            6788887765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.5e-13  Score=113.84  Aligned_cols=195  Identities=12%  Similarity=0.044  Sum_probs=126.3

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC---CCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      ..|.++|.+. ...+.+..|...+...+|+| +++.|+..+.   +..|.+||+.+++... +.   .+.+.+...+|+|
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG---NFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---cCCCcccCcEECC
Confidence            4788888754 44455666788999999999 7777776653   4689999998876543 33   3566778899999


Q ss_pred             CCCcEE-EEEecCCe--EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117          185 SDIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  258 (346)
Q Consensus       185 ~~~~~l-~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  258 (346)
                       +++.| ++.+.++.  |.+||+....                        ...+..+........|+  |+.++..+. 
T Consensus       256 -DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        256 -DGRKVVMSLSQGGNTDIYTMDLRSGT------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             -CCCEEEEEEecCCCceEEEEECCCCc------------------------eEEccCCCCccCceeEcCCCCEEEEEECC
Confidence             66544 56666665  6666776521                        22333344445566777  777776653 


Q ss_pred             cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC---CcEEEEEcCCCCcceeeeeee
Q 019117          259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---GKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       259 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~  333 (346)
                      ++  .|.++|+.+++          ...+......+....|+||+  +.|+..+.+   ..|.+||+.++.. .......
T Consensus       311 ~g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~  377 (435)
T PRK05137        311 SGSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF  377 (435)
T ss_pred             CCCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-EeccCCC
Confidence            33  57888876654          12222223455667899999  566655432   3688899866543 2222223


Q ss_pred             eEEEEEecCCCCC
Q 019117          334 FSLHVKYNPQSVY  346 (346)
Q Consensus       334 ~~~~~~~spdg~~  346 (346)
                      ......|+|||++
T Consensus       378 ~~~~p~~spDG~~  390 (435)
T PRK05137        378 LVEGPTWAPNGRV  390 (435)
T ss_pred             CCCCCeECCCCCE
Confidence            4567899999974

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=6.6e-12  Score=103.99  Aligned_cols=260  Identities=15%  Similarity=0.079  Sum_probs=150.7

Q ss_pred             ccEEEEEc-CCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117           49 FNVFATVG-GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG  126 (346)
Q Consensus        49 ~~~la~~~-~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  126 (346)
                      ++++++.. +++ |.+.|..+.+.+..+...      ..+ .....++|||+ ++++++.||.|.++|+.+.+.+.+++.
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~------~~~-h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG------GAP-HAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S------TTE-EEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCC------CCc-eeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEec
Confidence            45554433 334 999998888888877642      222 23344669999 888889999999999999999999885


Q ss_pred             CCCceEEEEEeCCCCceEEEe-eCCCCEEEEecCCCeeEEEecccC----CCCcceEEEEecCCCCc-EEEEEecCCeEE
Q 019117          127 HGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG----GHRNEVLSVDFHPSDIY-RIASCGMDNTVK  200 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~  200 (346)
                      . .....+++++ ++++++++ ..++.+.++|.++.+.++.+....    .....+.++..+| ... ++++--..+.|.
T Consensus        77 G-~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~  153 (369)
T PF02239_consen   77 G-GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIW  153 (369)
T ss_dssp             S-SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEE
T ss_pred             C-CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEE
Confidence            4 4568899999 77777655 578999999999999998876321    1235677888887 555 555555558888


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCc
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEG  277 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~  277 (346)
                      +-|......                      ................|+  +++++++ ..++.|-++|..+++......
T Consensus       154 vVdy~d~~~----------------------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  154 VVDYSDPKN----------------------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEETTTSSC----------------------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEeccccc----------------------cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            888776321                      111122223345556666  6776554 557899999998875321110


Q ss_pred             cccccccccCCCcCee-------EEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          278 TADILQKYPVPECDIW-------FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       278 ~~~~~~~~~~~~~~v~-------~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ...     ..|..++.       ...|...+.....++.-....+.+||..+.+.+......+...-+.-+||++|
T Consensus       212 ~g~-----~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~  282 (369)
T PF02239_consen  212 TGK-----KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRY  282 (369)
T ss_dssp             -SS-----SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SE
T ss_pred             ccc-----cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCcc
Confidence            000     00111111       12243333222332333334677899999998888888777777888999875

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.3e-12  Score=111.34  Aligned_cols=216  Identities=12%  Similarity=0.092  Sum_probs=131.8

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcC---C-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE-
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG---N-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-  103 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~---~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-  103 (346)
                      +..+...+...+|||    +|+.||..+.   + .+.+|++.+++... +..+     ........|  +|||+ .|+. 
T Consensus       194 lt~~~~~~~~p~wSP----DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~-----~~~~~~~~~--SPDG~-~La~~  260 (429)
T PRK03629        194 VHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF-----PRHNGAPAF--SPDGS-KLAFA  260 (429)
T ss_pred             eecCCCceeeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCC-----CCCcCCeEE--CCCCC-EEEEE
Confidence            344567889999999    7888876542   2 29999987765432 2221     111223444  59998 5554 


Q ss_pred             eecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEE--EecCCCeeEEEecccCCCCcceE
Q 019117          104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRL--WNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       104 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~i--wd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      .+.+|  .|.+||+++++..+... +...+....|+| +++.|+..+. ++...+  +|+..++.. .+.   .......
T Consensus       261 ~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~  334 (429)
T PRK03629        261 LSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQ  334 (429)
T ss_pred             EcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeE-Eee---cCCCCcc
Confidence            44455  58889998877654433 445678899999 7777766554 444444  466665443 333   2344556


Q ss_pred             EEEecCCCCcEEEEEecC---CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117          179 SVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  253 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  253 (346)
                      ...|+| ++++++..+.+   ..|.+||+.+...                        ..+.. ........|+  |++|
T Consensus       335 ~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~------------------------~~Lt~-~~~~~~p~~SpDG~~i  388 (429)
T PRK03629        335 DADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV------------------------QVLTD-TFLDETPSIAPNGTMV  388 (429)
T ss_pred             CEEECC-CCCEEEEEEccCCCceEEEEECCCCCe------------------------EEeCC-CCCCCCceECCCCCEE
Confidence            788999 77777665443   3578888876321                        11111 1111234455  8888


Q ss_pred             EEEeecCe---EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117          254 LSKSVDNE---IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  299 (346)
Q Consensus       254 ~~~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  299 (346)
                      +.++.++.   +.++++...          ....+..+.+.+...+|+|
T Consensus       389 ~~~s~~~~~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        389 IYSSSQGMGSVLNLVSTDGR----------FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEcCCCceEEEEEECCCC----------CeEECccCCCCcCCcccCC
Confidence            88887764   677777543          2344555666777788886

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=1e-12  Score=98.93  Aligned_cols=148  Identities=22%  Similarity=0.324  Sum_probs=104.3

Q ss_pred             EEEEEeecCCCccEEEEEcC-C----------cEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE--
Q 019117           38 AVVFNFIDSRYFNVFATVGG-N----------RVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA--  103 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~-~----------~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--  103 (346)
                      .+.|+|    .|+.|+.-.. +          ...+|.+.. +.....+..    ...+.|..++|+  |+|+ .|++  
T Consensus        10 ~~~W~~----~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l----~~~~~I~~~~Ws--P~g~-~favi~   78 (194)
T PF08662_consen   10 KLHWQP----SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL----KKEGPIHDVAWS--PNGN-EFAVIY   78 (194)
T ss_pred             EEEecc----cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec----cCCCceEEEEEC--cCCC-EEEEEE
Confidence            477887    5655544332 1          145555532 233333332    133468888887  8888 5433  


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      |..++.|.+||++ ++.+..+.  ...++.+.|+| ++++|++++.+   |.|.+||.++.+.+....    |. .++.+
T Consensus        79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~  149 (194)
T PF08662_consen   79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HS-DATDV  149 (194)
T ss_pred             ccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cC-cEEEE
Confidence            4467799999996 66666664  56778999999 88899888743   669999999888888775    44 47899


Q ss_pred             EecCCCCcEEEEEec------CCeEEEEEccc
Q 019117          181 DFHPSDIYRIASCGM------DNTVKIWSMKE  206 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~------d~~i~iwd~~~  206 (346)
                      +|+| +|++++++..      |..++||+...
T Consensus       150 ~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  150 EWSP-DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence            9999 8898988864      78899999865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.6e-13  Score=114.88  Aligned_cols=197  Identities=14%  Similarity=0.092  Sum_probs=122.6

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      ..|.++|.. +...+.+..+...+.+.+|+| +++.|+..+.+   ..|.+||+.+++.... .   ...+.+...+|+|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~---~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVV-A---NFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC
Confidence            467777764 444445556778899999999 77777766543   3599999998876443 2   2445567899999


Q ss_pred             CCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cC
Q 019117          185 SDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN  260 (346)
Q Consensus       185 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~  260 (346)
                       ++..| ++.+.++...+|.+....                      .....+..+........|+  |+.|+..+. ++
T Consensus       250 -DG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g  306 (427)
T PRK02889        250 -DGRTLAVALSRDGNSQIYTVNADG----------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG  306 (427)
T ss_pred             -CCCEEEEEEccCCCceEEEEECCC----------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence             66555 567778887777664310                      0122233334344556777  777765554 46


Q ss_pred             eEEEEcCC--CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC---cEEEEEcCCCCcceeeeeeeeE
Q 019117          261 EIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLICFS  335 (346)
Q Consensus       261 ~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~  335 (346)
                      ...+|.+.  +++          ...+...........|||||  ++|+..+.++   .|.+||+.+++...... ....
T Consensus       307 ~~~Iy~~~~~~g~----------~~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~  373 (427)
T PRK02889        307 APQIYRMPASGGA----------AQRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRD  373 (427)
T ss_pred             CcEEEEEECCCCc----------eEEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCc
Confidence            66677654  322          11111112233457899999  5676665443   69999999887543322 2234


Q ss_pred             EEEEecCCCCC
Q 019117          336 LHVKYNPQSVY  346 (346)
Q Consensus       336 ~~~~~spdg~~  346 (346)
                      ....|+|||++
T Consensus       374 ~~p~~spdg~~  384 (427)
T PRK02889        374 ESPSFAPNGRY  384 (427)
T ss_pred             cCceECCCCCE
Confidence            56899999974

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.56  E-value=2.2e-12  Score=97.50  Aligned_cols=230  Identities=13%  Similarity=0.121  Sum_probs=159.6

Q ss_pred             cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc-EEEEeecCCeEEEEEccCcceeeeeccC------CCce
Q 019117           59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGGINGIIRVIDVSNEKLHKSFVGH------GDSI  131 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v  131 (346)
                      ++.+|++.+.+... +...... ....+..+.|..-+.+.. .++-+..+|.|.++..........+.+-      ....
T Consensus        47 kl~Lys~~d~~~~~-l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   47 KLHLYSLEDMKLSP-LDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ceEEEeecccccCc-cceeeee-cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            38888887665544 2221111 334556677776555443 5667778899999987655443333321      1135


Q ss_pred             EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE--EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117          132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL--IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       132 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                      .++.|++ .+..++++..+|.+.+-+........  .++   .|+.++....|+..+.+++++|+.|+.+..||+|.+..
T Consensus       125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk---~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWK---VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eEEEeec-cCceEEEEcCCCcEEEEecceeeeeeccccc---ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            6888998 77888888889999866655443333  555   79999999999977789999999999999999995221


Q ss_pred             eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP  286 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  286 (346)
                                           ........|...|.++.-+   +.++++|+.|..|++||.++..+        ++..-.
T Consensus       201 ---------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl~~~~  251 (339)
T KOG0280|consen  201 ---------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--------PLFKAK  251 (339)
T ss_pred             ---------------------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--------ccccCc
Confidence                                 1122356688899999887   56999999999999999996542        333322


Q ss_pred             CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      . .+.|+.+..+|.-+..+|+++-.+| .+|-+.+.+..
T Consensus       252 v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~  288 (339)
T KOG0280|consen  252 V-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVL  288 (339)
T ss_pred             c-ccceEEEEecchhhhHHHHHHHhcC-ceEEEeccccc
Confidence            2 3789999999987645566665555 67777776543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=2.8e-13  Score=118.47  Aligned_cols=187  Identities=20%  Similarity=0.300  Sum_probs=139.0

Q ss_pred             cEEEE-EcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117           50 NVFAT-VGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        50 ~~la~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      ..++. .+.+.+.+||...+.....++.-   ...--..++-+..+++.- ++++|+.-+.|.+|++...+.-..+.+|.
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~GHe  175 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLKGHE  175 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcceecccC
Confidence            44444 44455999998877665555421   111112223344455555 99999999999999987444334688999


Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE-EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      +.|..+.++. ++.++++.|+|+++++|++.+.+... ..-   +|...|..+.|+| +  .++|++.|.+.++|+....
T Consensus       176 G~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---gHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~  248 (967)
T KOG0974|consen  176 GSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGF---GHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGT  248 (967)
T ss_pred             CceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccc---cccceeEEEEecc-c--eeEEeccceEEEEEecccc
Confidence            9999999999 99999999999999999999887766 222   7999999999998 5  8999999999999976651


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                                              .+..+..|. +.|..+...  ...+++++.|+.+++|++....
T Consensus       249 ------------------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  249 ------------------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             ------------------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence                                    222444454 346777776  4578999999999999987643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=8.4e-12  Score=95.97  Aligned_cols=283  Identities=12%  Similarity=0.174  Sum_probs=169.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      +.|.-+.|.. +  ....|.....++ |.+|++...+-...+..     ....+..++|+  |+|+.+|.+...+-.|.+
T Consensus        49 dki~yieW~a-d--s~~ilC~~yk~~~vqvwsl~Qpew~ckIde-----g~agls~~~WS--PdgrhiL~tseF~lriTV  118 (447)
T KOG4497|consen   49 DKIVYIEWKA-D--SCHILCVAYKDPKVQVWSLVQPEWYCKIDE-----GQAGLSSISWS--PDGRHILLTSEFDLRITV  118 (447)
T ss_pred             HHhhheeeec-c--ceeeeeeeeccceEEEEEeecceeEEEecc-----CCCcceeeeEC--CCcceEeeeecceeEEEE
Confidence            5577788987 1  234555566665 99999887666555553     45667778887  999878888888999999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC------------------------------------CCEEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD------------------------------------ESVRLW  156 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------------------------~~i~iw  156 (346)
                      |.+.+.+... ++-....+..++|+| ++++.+.+++-                                    ..+.+|
T Consensus       119 WSL~t~~~~~-~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw  196 (447)
T KOG4497|consen  119 WSLNTQKGYL-LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW  196 (447)
T ss_pred             EEeccceeEE-ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence            9998866433 222334557888888 67666554431                                    123444


Q ss_pred             ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeee------------------------
Q 019117          157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE------------------------  212 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------  212 (346)
                      |---.-.+..+.    -.-.+..++|+| .+++++.|+.|+.+++.+--+-+...+                        
T Consensus       197 d~~Leykv~aYe----~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q  271 (447)
T KOG4497|consen  197 DNVLEYKVYAYE----RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ  271 (447)
T ss_pred             cchhhheeeeee----eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence            432222222221    235688999999 999999999999998855433110000                        


Q ss_pred             -----eceeecCC-C-------CCCCCccceeceEEEe------ecccceEEEEec--CCEEEEEee--cCeEEEEcCCC
Q 019117          213 -----KSFTWTDL-P-------SKFPTKYVQFPVFIAS------VHSNYVDCNRWL--GDFILSKSV--DNEIVLWEPKM  269 (346)
Q Consensus       213 -----~~~~~~~~-~-------~~~~~~~~~~~~~~~~------~~~~~i~~~~~~--~~~l~~~~~--d~~i~iwd~~~  269 (346)
                           .++..... .       ..+........+..+.      .-...+--++|+  ..++++-..  -+.+-+||++.
T Consensus       272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN  351 (447)
T ss_pred             hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence                 00000000 0       0000000011111111      112346678888  445555433  36799999987


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      .+          +...-....+|....|.|..  ..|+.+.....+++|.......+....-.-.+..++|.-+|.
T Consensus       352 l~----------l~avLiQk~piraf~WdP~~--prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~  415 (447)
T KOG4497|consen  352 LK----------LHAVLIQKHPIRAFEWDPGR--PRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGE  415 (447)
T ss_pred             hh----------hhhhhhhccceeEEEeCCCC--ceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCc
Confidence            65          22333345689999999987  567777767789999987643333333333477888887774

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3e-12  Score=109.68  Aligned_cols=218  Identities=13%  Similarity=0.082  Sum_probs=130.5

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      .+..|...+.+.+|+|    +++.|+..+..    .|.+|++.++.... +..+     ........  ++|+|+.++++
T Consensus       198 ~lt~~~~~v~~p~wSp----Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~-----~g~~~~~~--~SpDG~~l~~~  265 (433)
T PRK04922        198 TILRSAEPILSPAWSP----DGKKLAYVSFERGRSAIYVQDLATGQREL-VASF-----RGINGAPS--FSPDGRRLALT  265 (433)
T ss_pred             EeecCCCccccccCCC----CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC-----CCCccCce--ECCCCCEEEEE
Confidence            3556677899999999    78888876632    29999987765432 2221     12222344  45999834455


Q ss_pred             eecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCCC--EEEEecCCCeeEEEecccCCCCcceE
Q 019117          104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDES--VRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       104 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      .+.+|  .|.+||+.+++.. .+..+.......+|+| +++.|+.++ .+|.  |.++|+.+++......    +.....
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~----~g~~~~  339 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTF----QGNYNA  339 (433)
T ss_pred             EeCCCCceEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeec----CCCCcc
Confidence            55555  5999999887754 3444555567889999 777766655 4454  6666776665433222    233445


Q ss_pred             EEEecCCCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117          179 SVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  253 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  253 (346)
                      ..+|+| +++.++..+.++   .|.+||+.+...                        ..+. +........|+  |+++
T Consensus       340 ~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~------------------------~~Lt-~~~~~~~p~~spdG~~i  393 (433)
T PRK04922        340 RASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSV------------------------RTLT-PGSLDESPSFAPNGSMV  393 (433)
T ss_pred             CEEECC-CCCEEEEEECCCCceeEEEEECCCCCe------------------------EECC-CCCCCCCceECCCCCEE
Confidence            789999 777776654332   589999876321                        1111 11122234565  7776


Q ss_pred             EEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117          254 LSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  299 (346)
Q Consensus       254 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  299 (346)
                      +..+.+   +.|.++++....          ...+..+.+.+...+|+|
T Consensus       394 ~~~s~~~g~~~L~~~~~~g~~----------~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        394 LYATREGGRGVLAAVSTDGRV----------RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEecCCceEEEEEECCCCc----------eEEcccCCCCCCCCccCC
Confidence            666553   457777775432          233333444556666765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=5.1e-12  Score=95.13  Aligned_cols=149  Identities=15%  Similarity=0.271  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCcEEEEeec---------CCeEEEEEccCc-ceeeeecc-CCCceEEEEEeCCCCceEEE--eeCCCCEEE
Q 019117           89 VSWACNVDGIPFLVAGGI---------NGIIRVIDVSNE-KLHKSFVG-HGDSINEIRTQPLKPSLVVS--ASKDESVRL  155 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~s--~~~d~~i~i  155 (346)
                      +.+..+++|..+++....         -+...+|.++.. .....+.- ..++|.+++|+| +++.|++  |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            334444777733333331         134556665332 33444432 345799999999 6666544  446789999


Q ss_pred             EecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                      ||++ ++.+..+.     ...++.+.|+| +|+++++++.   .|.|.+||+++.                       ..
T Consensus        88 yd~~-~~~i~~~~-----~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~-----------------------~~  137 (194)
T PF08662_consen   88 YDVK-GKKIFSFG-----TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK-----------------------KK  137 (194)
T ss_pred             EcCc-ccEeEeec-----CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC-----------------------EE
Confidence            9997 66676663     45778999999 8888888865   367999999972                       22


Q ss_pred             eEEEeecccceEEEEec--CCEEEEEee------cCeEEEEcCCCC
Q 019117          233 VFIASVHSNYVDCNRWL--GDFILSKSV------DNEIVLWEPKMK  270 (346)
Q Consensus       233 ~~~~~~~~~~i~~~~~~--~~~l~~~~~------d~~i~iwd~~~~  270 (346)
                      +...  +...++.+.|+  |++|+++..      |+.++||+....
T Consensus       138 i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  138 ISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             eecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            3222  23347899998  889998864      788999998643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=3.3e-12  Score=105.05  Aligned_cols=224  Identities=16%  Similarity=0.166  Sum_probs=145.0

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      ..-+.+.+  +|||+.++++|...-.|++||+.+-.+  .+..|. ..+..+....++-..++---.|.+|-+-.. -|.
T Consensus        52 ~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~  126 (703)
T KOG2321|consen   52 TASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR  126 (703)
T ss_pred             cccceeEe--cCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cCe
Confidence            33444444  599997788888899999999976543  333342 233333333325555565666777765432 232


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      .- .++    -+..-+.++++..+..+++ ++....|.-+++..+                       .-+..+......
T Consensus       127 hy-~~R----IP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqG-----------------------rfL~P~~~~~~~  177 (703)
T KOG2321|consen  127 HY-RTR----IPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQG-----------------------RFLNPFETDSGE  177 (703)
T ss_pred             ee-eee----cCcCCccccccCCCccEEE-eecCcceEEEEcccc-----------------------cccccccccccc
Confidence            21 222    2334456777653455444 444567888888873                       334455556678


Q ss_pred             eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      +.++..+  ..+|++|+.+|.|.+||.++............+....+  ....|+++.|+.+|  ..+++|+.+|.+.||
T Consensus       178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSVLIY  255 (703)
T ss_pred             ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc--eeEEeeccCCcEEEE
Confidence            8888888  67899999999999999998764222211111111111  12359999999998  889999999999999


Q ss_pred             EcCCCCcceeeeeee--eEEEEEecCC
Q 019117          319 ELQSSPPVLIARLIC--FSLHVKYNPQ  343 (346)
Q Consensus       319 d~~~~~~~~~~~~~~--~~~~~~~spd  343 (346)
                      |+.+.+++....+..  ++..+.|.+.
T Consensus       256 DLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  256 DLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             EcccCCceeecccCCccceeeeccccc
Confidence            999999888776654  4677888654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=1.7e-11  Score=105.14  Aligned_cols=210  Identities=14%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      |.++|..... .+.+..     +...+...+|+  |+|+ +|+.+..+   ..|.+||+.+++... +..+.+.+.+++|
T Consensus       172 l~~~d~~g~~-~~~l~~-----~~~~~~~p~~S--pdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~  241 (417)
T TIGR02800       172 LQVADYDGAN-PQTITR-----SREPILSPAWS--PDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF  241 (417)
T ss_pred             EEEEcCCCCC-CEEeec-----CCCceecccCC--CCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            7777754333 333322     33345555555  9999 77766543   479999998876543 3335566778999


Q ss_pred             eCCCCceE-EEeeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCC--eEEEEEcccccee
Q 019117          137 QPLKPSLV-VSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTY  210 (346)
Q Consensus       137 ~~~~~~~l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~  210 (346)
                      +| +++.| ++.+.++  .|.+||+.+++... +.   .+........|+| +++.|+..+ .++  .|.++|+...+  
T Consensus       242 sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~--  313 (417)
T TIGR02800       242 SP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE--  313 (417)
T ss_pred             CC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CC---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--
Confidence            99 66655 4555444  58889988765433 33   2444455678999 776665444 344  46666665421  


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                            ...+..+...+....|+  +++++.++.++   .|.+||+.++..          ..+
T Consensus       314 ----------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----------~~l  361 (417)
T TIGR02800       314 ----------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----------RVL  361 (417)
T ss_pred             ----------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----------EEc
Confidence                                  12233334455566776  77888877765   788999887531          111


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCC---cEEEEEcCC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQS  322 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~iwd~~~  322 (346)
                      ... .......|+||+  ..|+..+.++   .+++.+...
T Consensus       362 ~~~-~~~~~p~~spdg--~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       362 TDT-GLDESPSFAPNG--RMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             cCC-CCCCCceECCCC--CEEEEEEeCCCcEEEEEEECCC
Confidence            111 123345799999  4555555443   455556443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.4e-09  Score=88.04  Aligned_cols=287  Identities=15%  Similarity=0.136  Sum_probs=162.7

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCC-----cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEE
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN-----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWAC   93 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~-----~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~   93 (346)
                      ...+.....+. -.....-++++|    ++++|.+....     +|..|.+... ..+..+.....  ......  .++.
T Consensus        24 ~g~l~~~~~~~-~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~--~i~~   94 (345)
T PF10282_consen   24 TGTLTLVQTVA-EGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPC--HIAV   94 (345)
T ss_dssp             TTEEEEEEEEE-ESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEE--EEEE
T ss_pred             CCCceEeeeec-CCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcE--EEEE
Confidence            34455444432 233445688888    56777766552     3999998876 55555554322  222333  3445


Q ss_pred             cCCCCcEEEEee-cCCeEEEEEccC-cceeee---ec----------cCCCceEEEEEeCCCCceEEEee-CCCCEEEEe
Q 019117           94 NVDGIPFLVAGG-INGIIRVIDVSN-EKLHKS---FV----------GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN  157 (346)
Q Consensus        94 ~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd  157 (346)
                      +|+++ +|+++. .+|.|.++++.. +.....   +.          .......++.++| +++++++.. ....|.+|+
T Consensus        95 ~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   95 DPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             CTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred             ecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEE
Confidence            59999 666665 589999999976 433222   21          1234578999999 777666653 345799999


Q ss_pred             cCCCe--eE--EEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          158 VQTGI--CI--LIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       158 ~~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                      +....  ..  ..+..  ......+.++|+| +++++ ++.-.++.|.++++................+...        
T Consensus       173 ~~~~~~~l~~~~~~~~--~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~--------  241 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKV--PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF--------  241 (345)
T ss_dssp             E-TTS-TEEEEEEEEC--STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS--------
T ss_pred             EeCCCceEEEeecccc--ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc--------
Confidence            97654  22  22221  3567789999999 65555 5556678899999983111111100000000000        


Q ss_pred             eEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-E
Q 019117          233 VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-I  308 (346)
Q Consensus       233 ~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~  308 (346)
                           ........+.++  |++|.++. ..++|.+|+++...-     ....+..+.........++++|++  ++|+ +
T Consensus       242 -----~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g--~~l~Va  309 (345)
T PF10282_consen  242 -----TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDG--RYLYVA  309 (345)
T ss_dssp             -----CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTS--SEEEEE
T ss_pred             -----cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCC--CEEEEE
Confidence                 001245566666  77766655 478899999953210     122344444444457899999999  4555 4


Q ss_pred             EcCCCcEEEEEcC--CCCcceeee-e-eeeEEEEEe
Q 019117          309 GNREGKIFVWELQ--SSPPVLIAR-L-ICFSLHVKY  340 (346)
Q Consensus       309 ~~~dg~i~iwd~~--~~~~~~~~~-~-~~~~~~~~~  340 (346)
                      ...++.|.+|++.  +|.+..... . -..+.||.|
T Consensus       310 ~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  310 NQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             ecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            4577899999774  555443332 1 223677776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.9e-11  Score=101.03  Aligned_cols=186  Identities=19%  Similarity=0.220  Sum_probs=147.4

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeecc---CCCceEEEEEe------C-------------CCCceEEEeeCCCCEEEEe
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRTQ------P-------------LKPSLVVSASKDESVRLWN  157 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~s~~~d~~i~iwd  157 (346)
                      ++|....||.+++|+..+++....+..   -++..++..|.      |             .+...++-|...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            999999999999999999887766642   23444555552      1             1345678888899999999


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      +..++....+... .|.+.|.++.++. +-..|.+++.|+.+..|+...                       ...+....
T Consensus        87 ~~~g~it~~~st~-~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-----------------------~~~~~~~~  141 (541)
T KOG4547|consen   87 VAGGEITAKLSTD-KHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-----------------------KVIIRIWK  141 (541)
T ss_pred             ecCCeEEEEEecC-CCCCcceeeeccc-ccCceEecCCceeEEEEeccc-----------------------ceeeeeec
Confidence            9999888777632 6999999999996 888899999999999999988                       33455666


Q ss_pred             ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec-----CCcceEEEEc
Q 019117          238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD-----FHYNAAAIGN  310 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~~~l~~~~  310 (346)
                      ..+..+.+++++  +..+++++.  .|++||+++.+         .+..|.+|.++|.++.|.-+     |. .+|.+..
T Consensus       142 ~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~ke---------vv~~ftgh~s~v~t~~f~~~~~g~~G~-~vLssa~  209 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGKILLTASR--QIKVLDIETKE---------VVITFTGHGSPVRTLSFTTLIDGIIGK-YVLSSAA  209 (541)
T ss_pred             cCCCccceEEEcCCCCEEEeccc--eEEEEEccCce---------EEEEecCCCcceEEEEEEEeccccccc-eeeeccc
Confidence            677778888888  558887764  79999999988         89999999999999999987     43 3555555


Q ss_pred             CCCcEEEEEcCC
Q 019117          311 REGKIFVWELQS  322 (346)
Q Consensus       311 ~dg~i~iwd~~~  322 (346)
                      .+.-+.+|-+..
T Consensus       210 ~~r~i~~w~v~~  221 (541)
T KOG4547|consen  210 AERGITVWVVEK  221 (541)
T ss_pred             cccceeEEEEEc
Confidence            667788887765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=1.9e-11  Score=104.84  Aligned_cols=195  Identities=14%  Similarity=0.108  Sum_probs=121.9

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      ..|.++|..... .+.+..+...+...+|+| +++.|+.+..+   ..|++||+.+++......    +.+.+.+++|+|
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~~~~~~~~sp  243 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPGMNGAPAFSP  243 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCCCccceEECC
Confidence            368888875443 344555667789999999 78877776543   479999998876544332    555677799999


Q ss_pred             CCCcEE-EEEecCC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117          185 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  258 (346)
Q Consensus       185 ~~~~~l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  258 (346)
                       +++.| ++.+.++  .|.+||+.+...                        ..+..+........|+  ++.|+..+. 
T Consensus       244 -Dg~~l~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~  298 (417)
T TIGR02800       244 -DGSKLAVSLSKDGNPDIYVMDLDGKQL------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDR  298 (417)
T ss_pred             -CCCEEEEEECCCCCccEEEEECCCCCE------------------------EECCCCCCCCCCEEECCCCCEEEEEECC
Confidence             66544 4555554  488888876221                        1122222223344555  677766554 


Q ss_pred             cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC---cEEEEEcCCCCcceeeeeee
Q 019117          259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       259 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~  333 (346)
                      ++  .|.++|+.+++          ...+..+...+....|+|++  ++++.++.++   .|.+||+.++...... ...
T Consensus       299 ~g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~  365 (417)
T TIGR02800       299 GGSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERVLT-DTG  365 (417)
T ss_pred             CCCceEEEEECCCCC----------EEEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEEcc-CCC
Confidence            33  57777876554          12222233456678999999  5677766665   7899999886543222 122


Q ss_pred             eEEEEEecCCCCC
Q 019117          334 FSLHVKYNPQSVY  346 (346)
Q Consensus       334 ~~~~~~~spdg~~  346 (346)
                      ......|+|||++
T Consensus       366 ~~~~p~~spdg~~  378 (417)
T TIGR02800       366 LDESPSFAPNGRM  378 (417)
T ss_pred             CCCCceECCCCCE
Confidence            3345689999863

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=1.1e-12  Score=120.92  Aligned_cols=193  Identities=12%  Similarity=0.156  Sum_probs=148.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      +.|-..|.++.=+|    ...+.+||+.|+ |++|....++.+..++..    ....|+.+.|+  .+|+ .+..+..||
T Consensus      2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~----g~s~vtr~~f~--~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA----GNSRVTRSRFN--HQGN-KFGIVDGDG 2273 (2439)
T ss_pred             ecccCceeeecCCC----CCceEEecCCCceEEEEeccCCCeEEEeecc----Ccchhhhhhhc--ccCC-ceeeeccCC
Confidence            44556688888888    446889999998 999999988887777643    22566666666  7787 788888899


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee---CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      .+.+|... .++....+.|+....++.|-.   ..+++++   +++.+.+||..-......+.  ..|.+.++++++.| 
T Consensus      2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP- 2346 (2439)
T ss_pred             ceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-
Confidence            99999976 677778888999999999974   5667654   57899999975332222222  27999999999999 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW  265 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iw  265 (346)
                      ...+|++|+.+|.|++||++..+.                       +..+..       +. ...++++++..|.++||
T Consensus      2347 ~~qllisggr~G~v~l~D~rqrql-----------------------~h~~~~-------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQL-----------------------RHTFQA-------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHHHH-----------------------HHHhhh-------hh-hhheeeccCcccceEEE
Confidence            999999999999999999998321                       111111       11 16799999999999999


Q ss_pred             cCCCCC
Q 019117          266 EPKMKE  271 (346)
Q Consensus       266 d~~~~~  271 (346)
                      ++....
T Consensus      2396 ~~s~~~ 2401 (2439)
T KOG1064|consen 2396 RLSEFG 2401 (2439)
T ss_pred             Eccccc
Confidence            998765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.3e-10  Score=99.59  Aligned_cols=214  Identities=13%  Similarity=0.025  Sum_probs=117.4

Q ss_pred             ccceEEEEEEEcCCCCcEEEEeec-CC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCC--EEEE
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLW  156 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iw  156 (346)
                      ...+....|+  |||+ .|+..+. ++  .|.+||+.+++... +....+.....+|+| +++.|+ +.+.++.  |.++
T Consensus       217 ~~~~~~p~wS--PDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        217 PEPLMSPAWS--PDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             CCcccCceEC--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEE
Confidence            3445555665  9998 6665543 33  68888988876432 222233345789999 666554 5666675  7777


Q ss_pred             ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCe--EEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      |+.+++.. .+.   .+.......+|+| +++.++ +...++.  |.++|+...+                        .
T Consensus       292 dl~tg~~~-~lt---~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~------------------------~  342 (448)
T PRK04792        292 DIATKALT-RIT---RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGK------------------------V  342 (448)
T ss_pred             ECCCCCeE-ECc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC------------------------E
Confidence            88876643 333   3445667789999 666554 4444454  5555555421                        1


Q ss_pred             EEEeecccceEEEEec--CCEEEEEee-cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE
Q 019117          234 FIASVHSNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  308 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~--~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  308 (346)
                      ..+...........|+  |++++..+. ++  .|.++|+.+++..       .+   ... .......|+||++ .++.+
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-------~l---t~~-~~d~~ps~spdG~-~I~~~  410 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-------VL---TST-RLDESPSVAPNGT-MVIYS  410 (448)
T ss_pred             EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-------Ec---cCC-CCCCCceECCCCC-EEEEE
Confidence            1111111222334555  677766554 33  4555677765421       11   111 0112347999995 23444


Q ss_pred             EcCCC--cEEEEEcCCCCcceeeee-eeeEEEEEecCC
Q 019117          309 GNREG--KIFVWELQSSPPVLIARL-ICFSLHVKYNPQ  343 (346)
Q Consensus       309 ~~~dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~spd  343 (346)
                      ...++  .+++++... ........ .+.+...+|||-
T Consensus       411 ~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        411 TTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence            44444  377778744 33333332 345667889883

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.5e-10  Score=98.50  Aligned_cols=218  Identities=14%  Similarity=0.094  Sum_probs=125.7

Q ss_pred             EEEEEEEcCCCCc--EEEEeecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC----CEEEEe
Q 019117           87 YTVSWACNVDGIP--FLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE----SVRLWN  157 (346)
Q Consensus        87 ~~~~~~~~~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~----~i~iwd  157 (346)
                      ..-.|+  |||+.  ++++...+|  .|.+.++.+++..+.. ...+.....+|+| +++.|+..+ .+|    .+..|+
T Consensus       188 ~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        188 ITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             ccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC-CCCEEEEEECCCCCcceeEEEee
Confidence            334555  99873  222444443  5777788877643332 2344456789999 776666544 223    344467


Q ss_pred             cCCC---eeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          158 VQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       158 ~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      +..+   +......   .........+|+| +++.|+ +...+|...+|.+.....                    ....
T Consensus       264 ~~~g~~g~~~~lt~---~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~--------------------g~~~  319 (428)
T PRK01029        264 LETGAIGKPRRLLN---EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE--------------------GQSP  319 (428)
T ss_pred             cccCCCCcceEeec---CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc--------------------ccce
Confidence            6643   3332332   2223446789999 766555 444567666665432000                    0012


Q ss_pred             EEEeecccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-
Q 019117          234 FIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-  307 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-  307 (346)
                      ..+..+...+....|+  |+.|+..+.+   ..|.+||+.+++.          ..+......+....|+||++  .|+ 
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~--~L~f  387 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSL--HLVY  387 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCC--EEEE
Confidence            2233334455667777  7777766543   4699999988752          12222223456789999994  444 


Q ss_pred             EEcC--CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117          308 IGNR--EGKIFVWELQSSPPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       308 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg  344 (346)
                      +...  ...|++||+.+++........+.....+|+|-.
T Consensus       388 ~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        388 SAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            3332  457899999988766655555566778999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3.4e-10  Score=93.24  Aligned_cols=277  Identities=14%  Similarity=0.164  Sum_probs=169.0

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee--------
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG--------  105 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--------  105 (346)
                      .+++..++++    +|+++|.+..+.+.|++...+..+....      . ..++++.|+  |-|. +|.+--        
T Consensus        35 ~~~~v~~~S~----~G~lfA~~~~~~v~i~~~~~~~~~lt~~------~-~~~~~L~fS--P~g~-yL~T~e~~~i~~~~  100 (566)
T KOG2315|consen   35 RPCNVFAYSN----NGRLFAYSDNQVVKVFEIATLKVVLCVE------L-KKTYDLLFS--PKGN-YLLTWEPWAIYGPK  100 (566)
T ss_pred             CcceeEEEcC----CCcEEEEEcCCeEEEEEccCCcEEEEec------c-ceeeeeeec--cccc-ccccccccccccCC
Confidence            3466778888    7899999988889999988776322222      1 144445554  8887 776631        


Q ss_pred             --cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          106 --INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       106 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                        ..-.+.+|++.++.....+......-++..|++ +..+.+ ---.+.+.+|++...+.+..-    -|...|+.+.++
T Consensus       101 ~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl~a-rlv~nev~f~~~~~f~~~~~k----l~~~~i~~f~lS  174 (566)
T KOG2315|consen  101 NASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESLAA-RLVSNEVQFYDLGSFKTIQHK----LSVSGITMLSLS  174 (566)
T ss_pred             CCCCCceeeeeeccceehhheehhhhcCccccccc-chhhhh-hhhcceEEEEecCCccceeee----eeccceeeEEec
Confidence              124578999998665555543333336888998 544333 222467999999875443332    267889999999


Q ss_pred             CCC-C-cEEEE-----EecCCeEEEEEccccc-----------eeeeeceeecCCCCC----------------CCCccc
Q 019117          184 PSD-I-YRIAS-----CGMDNTVKIWSMKEFW-----------TYVEKSFTWTDLPSK----------------FPTKYV  229 (346)
Q Consensus       184 ~~~-~-~~l~s-----~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~----------------~~~~~~  229 (346)
                      | + . ..+++     .|.-+.+++|......           ....-.+.|......                +....+
T Consensus       175 p-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L  253 (566)
T KOG2315|consen  175 P-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL  253 (566)
T ss_pred             C-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence            8 5 2 33332     2455689999877310           111112222211110                000000


Q ss_pred             ------eeceEEEeecccceEEEEec--CCEEEE--EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117          230 ------QFPVFIASVHSNYVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  299 (346)
Q Consensus       230 ------~~~~~~~~~~~~~i~~~~~~--~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  299 (346)
                            +.....--.-.++|.++.|+  +.-+++  |-.-..+.|||++..          ++  +...+++-.++-|+|
T Consensus       254 yll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~v--~df~egpRN~~~fnp  321 (566)
T KOG2315|consen  254 YLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------PV--FDFPEGPRNTAFFNP  321 (566)
T ss_pred             EEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------Ee--EeCCCCCccceEECC
Confidence                  00011111235789999998  543433  344678999999854          23  333466778899999


Q ss_pred             cCCcceEEEEcC---CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          300 DFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       300 ~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      .|  ++++.++-   -|.|.|||+.+.+.+....... .+-+.|+|||+|
T Consensus       322 ~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~  368 (566)
T KOG2315|consen  322 HG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEY  368 (566)
T ss_pred             CC--CEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcE
Confidence            99  66766663   5789999999976555544443 355899999986

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.42  E-value=1.5e-12  Score=110.17  Aligned_cols=257  Identities=13%  Similarity=0.172  Sum_probs=184.2

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..++.++..+|    .|+-+|.++.-++.+.|+...-.......+.   ..-.|..+.|+.+|.-. +-++......-.+
T Consensus        24 ~~~~~a~si~p----~grdi~lAsr~gl~i~dld~p~~ppr~l~h~---tpw~vad~qws~h~a~~-~wiVsts~qkaii   95 (1081)
T KOG0309|consen   24 DGGFNAVSINP----SGRDIVLASRQGLYIIDLDDPFTPPRWLHHI---TPWQVADVQWSPHPAKP-YWIVSTSNQKAII   95 (1081)
T ss_pred             cCcccceeecc----ccchhhhhhhcCeEEEeccCCCCCceeeecc---CcchhcceecccCCCCc-eeEEecCcchhhh
Confidence            45678889998    7888999999999999987544333333222   23345567888777666 4444444566678


Q ss_pred             EEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCc
Q 019117          113 IDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       113 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      |++...   ..-..+.+|+..|+.+.|+|.....+++++-|-.+..||+++.. ++..+.   .-......+.|+-.++.
T Consensus        96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~---~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen   96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS---SWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---cccccCceeeecccCcc
Confidence            998543   34456778999999999999999999999999999999998754 344443   23455677889875666


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEE
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLW  265 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iw  265 (346)
                      .+++ +..+.|.+||++.+                      ..++..+.+|...|..+.|.   ...+++.+.|++|++|
T Consensus       173 vlas-shg~~i~vwd~r~g----------------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  173 VLAS-SHGNDIFVWDLRKG----------------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             hhhh-ccCCceEEEeccCC----------------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence            5554 55678999999984                      34677888899999999987   5689999999999999


Q ss_pred             cCCCCCCCCC----------------------------------------------CccccccccccCCCcCeeEEEEee
Q 019117          266 EPKMKEQSPG----------------------------------------------EGTADILQKYPVPECDIWFIKFSC  299 (346)
Q Consensus       266 d~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~v~~~~~s~  299 (346)
                      |.........                                              .....+++.+.+|...|...-|-.
T Consensus       230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~  309 (1081)
T KOG0309|consen  230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK  309 (1081)
T ss_pred             cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence            9865432110                                              112345667777777665544432


Q ss_pred             --------cCCcceEEEEcCCCcEEEEEcCCC
Q 019117          300 --------DFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       300 --------~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                              |.+.-.|++=+.|..+++|-+.+.
T Consensus       310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence                    222247999999999999998653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=1.5e-11  Score=95.10  Aligned_cols=226  Identities=15%  Similarity=0.191  Sum_probs=141.5

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-----eeeeeccCC------------CceEEEEEeCC-CCceEE
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPL-KPSLVV  145 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~-~~~~l~  145 (346)
                      +-+.++.|.  ..|. +|++|..+|.|.++.-....     ....++.|.            ..|..+.|.+. +...++
T Consensus        26 diis~vef~--~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   26 DIISAVEFD--HYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             cceeeEEee--cccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            345555555  8898 99999999999999743322     223344443            46888999873 234677


Q ss_pred             EeeCCCCEEEEecCCCeeEE---------------Eecc------------------cCCCCcceEEEEecCCCCcEEEE
Q 019117          146 SASKDESVRLWNVQTGICIL---------------IFAG------------------AGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       146 s~~~d~~i~iwd~~~~~~~~---------------~~~~------------------~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      ....|.+|++|.++......               .++.                  ..+|..-|+++.++. +...+++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS  181 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS  181 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence            77889999999886322111               0000                  016888899999996 7777777


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~  269 (346)
                      + .|=.|.+|++.-...    ++...+           .....+..-...|++..|+   .+.++-.+..|+|++.|++.
T Consensus       182 A-DdLRINLWnlei~d~----sFnIVD-----------IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQ----SFNIVD-----------IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             c-cceeeeeccccccCC----ceeEEE-----------ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            6 477899999876221    111000           0011122223457777777   56888889999999999985


Q ss_pred             CCC-------CCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC-CCCcceeeeee
Q 019117          270 KEQ-------SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLI  332 (346)
Q Consensus       270 ~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~  332 (346)
                      ...       ..+...+....-+..--..|..+.|+++|  +++++-.. -+|++||+. ..+++..+.+.
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            421       00000111111222233578899999999  78887654 589999994 45566555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.42  E-value=7.6e-10  Score=84.09  Aligned_cols=237  Identities=15%  Similarity=0.119  Sum_probs=141.8

Q ss_pred             CccEEEEEcCCcEEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec
Q 019117           48 YFNVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV  125 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  125 (346)
                      +|++||...+..|.|-..+++-  .+...+.  .......-.-++|+  ||+. +||.+...|+|+++|+...+ +..+.
T Consensus         8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WS--pD~t-lLa~a~S~G~i~vfdl~g~~-lf~I~   81 (282)
T PF15492_consen    8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWS--PDCT-LLAYAESTGTIRVFDLMGSE-LFVIP   81 (282)
T ss_pred             CCcEEEEEeccEEEEEeccCCchheeEEEec--CCCCCchheEEEEC--CCCc-EEEEEcCCCeEEEEecccce-eEEcC
Confidence            7899999977777777655432  2333332  22334455567776  9999 99999999999999986533 33332


Q ss_pred             c-------CCCceEEEEEeCCC-----CceEEEeeCCCCEEEEecCC-----CeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          126 G-------HGDSINEIRTQPLK-----PSLVVSASKDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       126 ~-------~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      .       -...|..+.|.+..     ...|++-..+|.++-|-+..     .+....+.-...+...|.++.++| ..+
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~  160 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHR  160 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCC
Confidence            2       23567777776522     23566667788887776532     233444443334578999999999 777


Q ss_pred             EEEEEecCCe-----------EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEE-EE
Q 019117          189 RIASCGMDNT-----------VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFIL-SK  256 (346)
Q Consensus       189 ~l~s~~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~  256 (346)
                      +|+.||....           +..|.+-+..                                         +.+.. +.
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-----------------------------------------Pyyk~v~~  199 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDS-----------------------------------------PYYKQVTS  199 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCC-----------------------------------------CcEEEccc
Confidence            7777764322           2223222210                                         11111 11


Q ss_pred             eecCe------EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          257 SVDNE------IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       257 ~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      ..|+.      -.+|.+-+.+         ...........|..|..|||+  ..||+...+|.|.+|++.+-.+.....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~---------~fs~~~~~~d~i~kmSlSPdg--~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  200 SEDDITASSKRRGLLRIPSFK---------FFSRQGQEQDGIFKMSLSPDG--SLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cCccccccccccceeecccee---------eeeccccCCCceEEEEECCCC--CEEEEEEcCCeEEEEecCcchhhcccc
Confidence            11111      1222222111         011112234579999999999  799999999999999999987766665


Q ss_pred             eeeeEEEEEecCC
Q 019117          331 LICFSLHVKYNPQ  343 (346)
Q Consensus       331 ~~~~~~~~~~spd  343 (346)
                      ....+-.=.++|+
T Consensus       269 ~~eqPg~~e~np~  281 (282)
T PF15492_consen  269 QDEQPGYNEINPD  281 (282)
T ss_pred             hhhCCCCccCCCC
Confidence            5544433444443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.1e-10  Score=96.04  Aligned_cols=250  Identities=17%  Similarity=0.224  Sum_probs=156.8

Q ss_pred             EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE-----eecCCeEE
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-----GGINGIIR  111 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-----~~~dg~i~  111 (346)
                      ++..|++    |..+.|--..+.+.+|+...-+...  .    .-+...+....+++.|... .+|+     .+.-..|+
T Consensus       129 W~~qfs~----dEsl~arlv~nev~f~~~~~f~~~~--~----kl~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vr  197 (566)
T KOG2315|consen  129 WVPQFSI----DESLAARLVSNEVQFYDLGSFKTIQ--H----KLSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVR  197 (566)
T ss_pred             ccccccc----chhhhhhhhcceEEEEecCCcccee--e----eeeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEE
Confidence            5788887    4566666666669999977633221  1    1255667777777554444 5554     34556899


Q ss_pred             EEEccCcceeeeecc---CCCceEEEEEeCCCCceEEEeeC--C---------CCEEEEecCCCeeEEEecccCCCCcce
Q 019117          112 VIDVSNEKLHKSFVG---HGDSINEIRTQPLKPSLVVSASK--D---------ESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       112 iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~--d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      ||....+.....+..   -...=..+.|++-+..+|+.++.  |         .++++.+++.......+.    ..++|
T Consensus       198 i~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPV  273 (566)
T KOG2315|consen  198 IYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----KEGPV  273 (566)
T ss_pred             EeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----CCCCc
Confidence            998763322111110   11122367788733334443332  2         468888887445555554    68999


Q ss_pred             EEEEecCCCCcEEEE--EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117          178 LSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  253 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  253 (346)
                      .++.|+| ++..++.  |-+-..+.|||++.                        .+++.+  -+++=.++-|+  |+++
T Consensus       274 hdv~W~~-s~~EF~VvyGfMPAkvtifnlr~------------------------~~v~df--~egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  274 HDVTWSP-SGREFAVVYGFMPAKVTIFNLRG------------------------KPVFDF--PEGPRNTAFFNPHGNII  326 (566)
T ss_pred             eEEEECC-CCCEEEEEEecccceEEEEcCCC------------------------CEeEeC--CCCCccceEECCCCCEE
Confidence            9999999 6644443  44567899999987                        233333  34555677777  8898


Q ss_pred             EEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc------CCCcEEEEEcCCCC
Q 019117          254 LSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN------REGKIFVWELQSSP  324 (346)
Q Consensus       254 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~------~dg~i~iwd~~~~~  324 (346)
                      +.+|.+   |.|-|||..+.+         .+..+...  .-+-+.|+|||  .++++++      -|+.++||+.. |.
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K---------~i~~~~a~--~tt~~eW~PdG--e~flTATTaPRlrvdNg~Kiwhyt-G~  392 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRK---------LIAKFKAA--NTTVFEWSPDG--EYFLTATTAPRLRVDNGIKIWHYT-GS  392 (566)
T ss_pred             EEeecCCCCCceEEEeccchh---------hccccccC--CceEEEEcCCC--cEEEEEeccccEEecCCeEEEEec-Cc
Confidence            888874   789999999866         55555543  34568999999  5666665      38899999985 55


Q ss_pred             cceeeeeeeeEEEEEecC
Q 019117          325 PVLIARLICFSLHVKYNP  342 (346)
Q Consensus       325 ~~~~~~~~~~~~~~~~sp  342 (346)
                      ++.....+.....+.|-|
T Consensus       393 ~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  393 LLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             eeehhhhhHhHhheeeee
Confidence            444444443345566654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=9.4e-09  Score=85.45  Aligned_cols=255  Identities=16%  Similarity=0.147  Sum_probs=147.7

Q ss_pred             cEEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----CCeEEEEEccCc--c--eeeeeccCCC
Q 019117           59 RVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NGIIRVIDVSNE--K--LHKSFVGHGD  129 (346)
Q Consensus        59 ~v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~~~~  129 (346)
                      +|.+|++. +...+..+....   ......-+++  +|+++ +|.+...    ++.|..|++...  +  .+........
T Consensus        14 gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~--~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~   87 (345)
T PF10282_consen   14 GIYVFRFDEETGTLTLVQTVA---EGENPSWLAV--SPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS   87 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEE---ESSSECCEEE---TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             cEEEEEEcCCCCCceEeeeec---CCCCCceEEE--EeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence            59999883 333444444322   1222233454  48888 7777765    579999998764  3  3334443445


Q ss_pred             ceEEEEEeCCCCceEEEee-CCCCEEEEecCC-CeeEEE---ecc-------cCCCCcceEEEEecCCCCcEEEEEe-cC
Q 019117          130 SINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GICILI---FAG-------AGGHRNEVLSVDFHPSDIYRIASCG-MD  196 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~---~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~-~d  196 (346)
                      ....++++| ++.+|+++. .+|.|.++++.. +.....   +..       .........++.++| +++++++.. ..
T Consensus        88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~  165 (345)
T PF10282_consen   88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA  165 (345)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred             CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence            567899999 666666665 589999999986 433322   210       001235578899999 777666653 34


Q ss_pred             CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCC
Q 019117          197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQ  272 (346)
Q Consensus       197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~  272 (346)
                      ..|.+|++......+..                   ...+. .....-+.+.|+  ++++.+.. .+++|.++++....-
T Consensus       166 D~v~~~~~~~~~~~l~~-------------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g  226 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTP-------------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG  226 (345)
T ss_dssp             TEEEEEEE-TTS-TEEE-------------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CEEEEEEEeCCCceEEE-------------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence            58999999873311110                   11111 223445667776  66665554 488899999882211


Q ss_pred             CCCCccccccccccC------CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC--CCCcceeeeee--e-eEEEEEec
Q 019117          273 SPGEGTADILQKYPV------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIARLI--C-FSLHVKYN  341 (346)
Q Consensus       273 ~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~--~-~~~~~~~s  341 (346)
                           ....++....      .......++++||++ .+.++....+.|.+|++.  ++++.......  + .+..++++
T Consensus       227 -----~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~-~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  227 -----SLTEIQTISTLPEGFTGENAPAEIAISPDGR-FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             -----EEEEEEEEESCETTSCSSSSEEEEEE-TTSS-EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred             -----ceeEEEEeeeccccccccCCceeEEEecCCC-EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence                 0111111111      112578899999995 345556678899999993  35544433332  2 37899999


Q ss_pred             CCCCC
Q 019117          342 PQSVY  346 (346)
Q Consensus       342 pdg~~  346 (346)
                      |||+|
T Consensus       301 ~~g~~  305 (345)
T PF10282_consen  301 PDGRY  305 (345)
T ss_dssp             TTSSE
T ss_pred             CCCCE
Confidence            99985

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=4e-09  Score=85.73  Aligned_cols=269  Identities=11%  Similarity=-0.041  Sum_probs=149.7

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-----------CcEEEEEeccCceeeeEeeeecCCCccceEEEEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSW   91 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-----------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   91 (346)
                      .+.+.++..-..+- .+ ++|    +++.|+++..           |.|.+||..+.+.+..+..-..+.-........+
T Consensus        37 ~~v~g~i~~G~~P~-~~-~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~  110 (352)
T TIGR02658        37 GRVLGMTDGGFLPN-PV-VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMT  110 (352)
T ss_pred             CEEEEEEEccCCCc-ee-ECC----CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceE
Confidence            44555554333332 24 888    6777766665           3499999999998887764211100012222356


Q ss_pred             EEcCCCCcEEEEee-c-CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe--
Q 019117           92 ACNVDGIPFLVAGG-I-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF--  167 (346)
Q Consensus        92 ~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--  167 (346)
                      .++|||+ +|+... . +..|.+.|+.+++.+..+.-.. ...-...++  ...+ +-+.||......+.+......-  
T Consensus       111 ~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~  185 (352)
T TIGR02658       111 SLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIKPT  185 (352)
T ss_pred             EECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccE-EEeecCceEEEEecCCCceEEeee
Confidence            6679999 777665 3 7899999999999988887422 222222222  1222 2234555544433321111110  


Q ss_pred             cccCC-----CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          168 AGAGG-----HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       168 ~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      .....     ...+    .|.+.++.+++.... |+|.+.|+................           ....-...+..
T Consensus       186 ~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-----------~~~~~~wrP~g  249 (352)
T TIGR02658       186 EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-----------AEKADGWRPGG  249 (352)
T ss_pred             eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-----------cccccccCCCc
Confidence            00000     0111    334435666666655 999999976522211111100000           00000123333


Q ss_pred             eEEEEec--CCEEEEEe----------ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117          243 VDCNRWL--GDFILSKS----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      +.-++++  ++.+.+..          ..+.|.++|..+.+         .+..+.. ...+..++++||++. +|++..
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------vi~~i~v-G~~~~~iavS~Dgkp-~lyvtn  318 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------RLRKIEL-GHEIDSINVSQDAKP-LLYALS  318 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---------EEEEEeC-CCceeeEEECCCCCe-EEEEeC
Confidence            3446665  66666532          22579999999887         5555544 347899999999942 555444


Q ss_pred             -CCCcEEEEEcCCCCcceee
Q 019117          311 -REGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       311 -~dg~i~iwd~~~~~~~~~~  329 (346)
                       .++.|.++|..+++.+...
T Consensus       319 ~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       319 TGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCCcEEEEECcCCeEEeee
Confidence             6888999999999877665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.40  E-value=3.8e-10  Score=84.64  Aligned_cols=202  Identities=13%  Similarity=0.070  Sum_probs=139.4

Q ss_pred             EEEEeecCCeEEEEEccCcce-eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc--c
Q 019117          100 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN--E  176 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~  176 (346)
                      +|+.|+..|...+|...+.+. .+....|...|+-+.-..+...-+..++.|.++++.++.-+......     |..  .
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~  160 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLT  160 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccc
Confidence            899999999999999986653 33444455544433322223345667788999999988644332222     322  3


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      +.++++++ ++.++++.+....|..|.+........+                    ......++.-.+..|+  ...+|
T Consensus       161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~--------------------~~~a~t~D~gF~~S~s~~~~~FA  219 (344)
T KOG4532|consen  161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIEN--------------------IYEAPTSDHGFYNSFSENDLQFA  219 (344)
T ss_pred             eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeee--------------------eEecccCCCceeeeeccCcceEE
Confidence            78999998 9999999999999999999873221111                    1223344445667777  66899


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                      ++..||++.|||++......    .....+-+.|.+.+..+.|++-|.-.+|...-.-+.+.+-|++++...+.+..
T Consensus       220 v~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  220 VVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             EEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            99999999999999765311    11222334588999999999877656777777778999999999875554443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.39  E-value=8.1e-12  Score=92.90  Aligned_cols=225  Identities=15%  Similarity=0.159  Sum_probs=128.8

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-  105 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-  105 (346)
                      .+..|.++-.+-+.+.    .++.++++..|+ +.+++.+....   +.......+-+ -.+.+..  ..++ ++.++. 
T Consensus        84 ~~a~~sep~p~~~~s~----~~t~V~~~~~dg~~~v~s~~~~~~---~~~~i~~~~~~-~as~~~~--~~~~-~i~s~~~  152 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTM----TDNRVCIGYADGSLAVFSTDKDLA---LMSRIPSIHSG-SASRKIC--RHGN-SILSGGC  152 (319)
T ss_pred             eeeccCCCCCcccccc----cCCceEecCCCceEEEEechHHHh---hhhhccccccc-cccccee--eccc-EEecCCc
Confidence            3334444433333333    457899999998 88888654211   11100000111 1112222  3343 444432 


Q ss_pred             ----cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE-EecccCCCCcceEEE
Q 019117          106 ----INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 ----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~  180 (346)
                          .-+..++|+++..+....-......|.+++-+|...+++++|+.||.+-+||.+...... .++   .|+.++..+
T Consensus       153 g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~---ahk~~i~eV  229 (319)
T KOG4714|consen  153 GNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK---AHKAEIWEV  229 (319)
T ss_pred             ceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH---Hhhhhhhhe
Confidence                123455666554332222222334599999999777788899999999999999774333 344   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeee-eceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD  259 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d  259 (346)
                      -|+|.++..|++++.||.+-.||....-.... .........+..+.+.....-..+......|.++...|..|++|+.-
T Consensus       230 ~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~  309 (319)
T KOG4714|consen  230 HFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDA  309 (319)
T ss_pred             eccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEecccc
Confidence            99999999999999999999999885111100 00000000011111111111112222334466666669999999998


Q ss_pred             CeEEEEc
Q 019117          260 NEIVLWE  266 (346)
Q Consensus       260 ~~i~iwd  266 (346)
                      +.|++++
T Consensus       310 eaIyl~~  316 (319)
T KOG4714|consen  310 EAIYLTR  316 (319)
T ss_pred             ceEEEec
Confidence            9888875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.6e-10  Score=98.09  Aligned_cols=231  Identities=10%  Similarity=0.026  Sum_probs=128.8

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      |.++|..... .+.+..     +...+....|+  |||+ .|+..+.+   ..|.+||+.+++... +....+.+....|
T Consensus       181 l~~~d~~g~~-~~~l~~-----~~~~~~~p~wS--pDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~  250 (430)
T PRK00178        181 LQRSDYDGAR-AVTLLQ-----SREPILSPRWS--PDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW  250 (430)
T ss_pred             EEEECCCCCC-ceEEec-----CCCceeeeeEC--CCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence            6666755433 233322     34455555665  9998 77665433   368999998876543 2223344567899


Q ss_pred             eCCCCceEE-EeeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE-EEEecCC--eEEEEEcccccee
Q 019117          137 QPLKPSLVV-SASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDN--TVKIWSMKEFWTY  210 (346)
Q Consensus       137 ~~~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~--~i~iwd~~~~~~~  210 (346)
                      +| +++.|+ +.+.++  .|.+||+.+++.. .+.   .+........|+| +++.+ ++...++  .|.++|+...+. 
T Consensus       251 Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt---~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~-  323 (430)
T PRK00178        251 SP-DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT---NHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA-  323 (430)
T ss_pred             CC-CCCEEEEEEccCCCceEEEEECCCCCeE-Ecc---cCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            99 666655 555555  5888899877654 343   3455566788999 66555 4444444  466666655221 


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec-C--eEEEEcCCCCCCCCCCccccccccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD-N--EIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                             ..+...........|+  |+.++..+.+ +  .|.++|+.+++..       .+.. 
T Consensus       324 -----------------------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-------~lt~-  372 (430)
T PRK00178        324 -----------------------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-------ILTD-  372 (430)
T ss_pred             -----------------------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-------EccC-
Confidence                                   0111111112234455  6777666543 2  5888898876521       1111 


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEc-CC--CcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGN-RE--GKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      .   .......|+||++  .++..+ .+  ..|.++++..+.........+.+...+|+|-
T Consensus       373 ~---~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        373 T---SLDESPSVAPNGT--MLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             C---CCCCCceECCCCC--EEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            1   1112457999994  454443 33  3577778755433222222345666788874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.38  E-value=2.5e-11  Score=92.80  Aligned_cols=266  Identities=17%  Similarity=0.219  Sum_probs=162.9

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-----eeeeEeeeecC-------CCccceEEEEEEEcCCCC
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDE-------DKEESFYTVSWACNVDGI   98 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~   98 (346)
                      ..+.|++|.|..    .|.+||+|..+| |.+|......     -...++.|..+       .-.+.|..+.|. .+.++
T Consensus        25 ead~ItaVefd~----tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r   99 (460)
T COG5170          25 EADKITAVEFDE----TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGR   99 (460)
T ss_pred             ccceeeEEEecc----ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee-cCCCc
Confidence            356799999987    789999999888 9888755432     11223333211       124577888886 34555


Q ss_pred             cEEEEeecCCeEEEEEccCcc-------------------------------------ee-----eee-ccCCCceEEEE
Q 019117           99 PFLVAGGINGIIRVIDVSNEK-------------------------------------LH-----KSF-VGHGDSINEIR  135 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~~~~~~v~~~~  135 (346)
                      ..++..+.|.+|++|.+....                                     .+     +.+ ..|.--++++.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence            577777789999999874320                                     00     111 34677788999


Q ss_pred             EeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-----CcceEEEEecCCCCcEEEEEecCCeEEEEEcccccee
Q 019117          136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY  210 (346)
Q Consensus       136 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  210 (346)
                      |+. +...++++ +|=.|.+|++.-......+.....|     ..-|++..|+|.....+.-.+..|.|++-|++....-
T Consensus       180 ~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         180 FNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             ecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            998 66666665 4678999998743222222111123     2468899999977788888888999999999962211


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  288 (346)
                      ......+.       ....+....-+..-...|..+.|+  |+++++-+. -+|+|||.+..+.        ++.+.+.|
T Consensus       258 dn~~klfe-------~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~--------pikTi~~h  321 (460)
T COG5170         258 DNSKKLFE-------LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN--------PIKTIPMH  321 (460)
T ss_pred             cCchhhhh-------hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC--------CceeechH
Confidence            10000000       000001111122233557778888  667776554 5899999998763        33333222


Q ss_pred             ------------CcCe---eEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          289 ------------ECDI---WFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       289 ------------~~~v---~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                                  ...|   ..+.||-|.  ..+++|+..+..-++-+.+
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~--~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDD--KHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCc--ccccccccccceeeecccc
Confidence                        1122   346677776  6788888888777776443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2.2e-10  Score=97.98  Aligned_cols=132  Identities=11%  Similarity=0.102  Sum_probs=96.3

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecC-------C-CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEE
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDS-------R-YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVS   90 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-------~-~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~   90 (346)
                      ...+++++.+..|+..|+.+.|.|.+.       . ..-++|++.-.| |.+||...+..+..++.     +..++..++
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-----~~~~~qdl~  116 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-----SNDSVQDLC  116 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-----CCcchhhee
Confidence            356788888999999999999998321       1 234677777666 99999998887777764     667778899


Q ss_pred             EEEcCCCC-cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEE
Q 019117           91 WACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW  156 (346)
Q Consensus        91 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  156 (346)
                      |....+.. .+|++-.....+.+|+..+|+....+........|+.+.|.+...+..-+..|.+.+-
T Consensus       117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence            98765443 5777777788999999999998887776566666777777655555544444444333

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=1.3e-08  Score=82.89  Aligned_cols=252  Identities=9%  Similarity=-0.045  Sum_probs=146.0

Q ss_pred             CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee---------cCCeEEEEEccCcceeeeeccCC
Q 019117           58 NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        58 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      +.|.+.|..+++.+..+..-.      .-..+   .+|||+.+.++.+         .+..|.+||..+.+.+..+....
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~------~P~~~---~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF------LPNPV---VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC------CCcee---ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            459999999988877776421      11112   4599994444444         57899999999999998887422


Q ss_pred             C-------ceEEEEEeCCCCceEEEee-C-CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117          129 D-------SINEIRTQPLKPSLVVSAS-K-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  199 (346)
Q Consensus       129 ~-------~v~~~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  199 (346)
                      .       ....++++| ++++++... . +..|.+.|+.+++.+.++..    .+...-...++ +..+  .-+.||..
T Consensus        98 ~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e-~~~~--~~~~Dg~~  169 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAN-DTFF--MHCRDGSL  169 (352)
T ss_pred             CchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecC-CccE--EEeecCce
Confidence            2       334889999 777777655 3 78999999999999998873    22222222221 2222  22234544


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe-cCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      ....+...............      .  ...++.   .++    .... .+.++.+... |+|.+.|+...+..... .
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~------~--~~~~v~---~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~  232 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFH------P--EDEYLI---NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-A  232 (352)
T ss_pred             EEEEecCCCceEEeeeeeec------C--Cccccc---cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecc-e
Confidence            44333331110000000000      0  000000   111    0111 2666666555 99999997654321111 0


Q ss_pred             ccccccc----cCCCcCeeEEEEeecCCcceEEEE----------cCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117          279 ADILQKY----PVPECDIWFIKFSCDFHYNAAAIG----------NREGKIFVWELQSSPPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       279 ~~~~~~~----~~~~~~v~~~~~s~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg  344 (346)
                      ...+..-    ....+.+.-++++++++  .+.+.          ...+.|.++|..+++.+..+.....+..++++|||
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~--~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg  310 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARD--RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA  310 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCC--EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC
Confidence            0000000    11233445599999995  34432          12257999999999988888888889999999999


Q ss_pred             C
Q 019117          345 V  345 (346)
Q Consensus       345 ~  345 (346)
                      +
T Consensus       311 k  311 (352)
T TIGR02658       311 K  311 (352)
T ss_pred             C
Confidence            8

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.35  E-value=3.7e-11  Score=94.84  Aligned_cols=150  Identities=15%  Similarity=0.255  Sum_probs=105.5

Q ss_pred             CccEEEEEcCCc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe---ecCCeEEEEEccCcceee
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG---GINGIIRVIDVSNEKLHK  122 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~  122 (346)
                      .+++||.+..+. ..++++..... .+.+..+...   ..-..+.+.  .+.. ....+   +....+.+|....+. ..
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~---~~~~ai~~~--~~~~-sv~v~dkagD~~~~di~s~~~~~-~~  145 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP---KRPTAISFI--REDT-SVLVADKAGDVYSFDILSADSGR-CE  145 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeecc---cCcceeeee--eccc-eEEEEeecCCceeeeeecccccC-cc
Confidence            788999888777 66777765544 3334333222   222233333  3333 33333   334455566555433 34


Q ss_pred             eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117          123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  202 (346)
                      .+-+|-..+++|+|+| ++++++++..|..|++-....--.+..+-.  ||...|..++.-+  ++.|++++.|+++++|
T Consensus       146 ~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~--~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD--NYLLLSGSGDKTLRLW  220 (390)
T ss_pred             hhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc--CceeeecCCCCcEEEE
Confidence            5567999999999999 889999999999999988876666665543  7999999999984  5669999999999999


Q ss_pred             Eccccce
Q 019117          203 SMKEFWT  209 (346)
Q Consensus       203 d~~~~~~  209 (346)
                      |+++++.
T Consensus       221 d~~sgk~  227 (390)
T KOG3914|consen  221 DITSGKL  227 (390)
T ss_pred             ecccCCc
Confidence            9999654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=2.2e-10  Score=97.99  Aligned_cols=264  Identities=14%  Similarity=0.155  Sum_probs=180.9

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC--------C-CCcEEEEee
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV--------D-GIPFLVAGG  105 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~-~~~~l~~~~  105 (346)
                      .-.++.|+|     +.++|.|+..-|.+.|..+-+.+..+..     |...|..+.|++-|        . ..-+||++.
T Consensus        17 N~~A~Dw~~-----~GLiAygshslV~VVDs~s~q~iqsie~-----h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD   86 (1062)
T KOG1912|consen   17 NRNAADWSP-----SGLIAYGSHSLVSVVDSRSLQLIQSIEL-----HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD   86 (1062)
T ss_pred             cccccccCc-----cceEEEecCceEEEEehhhhhhhhcccc-----CccceeEEEeccCCCchhccCccccceeEEecc
Confidence            356788887     6799999988899999888887777764     67889999998432        1 223678888


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCC--CC-ceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KP-SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      ..|.|.+||...+..+..+..|.+++.++.|-+.  +. ..|++-....++.+|+..+|+...+..   .......|+.+
T Consensus        87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---ys~~iLs~f~~  163 (1062)
T KOG1912|consen   87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---YSHEILSCFRV  163 (1062)
T ss_pred             ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---cCCcceeeeee
Confidence            8999999999999989999999999999999873  22 467777777899999999999998887   45566778999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceee--eeceeecCCCCCCCCccceeceEEEeecccc------e-EE--EEec--
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYV--EKSFTWTDLPSKFPTKYVQFPVFIASVHSNY------V-DC--NRWL--  249 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i-~~--~~~~--  249 (346)
                      .|.+.+.+..-+..|.+.+-+.-...+..  .+.+......+....  .......-..++..      + .|  ++|+  
T Consensus       164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~--lere~at~ns~ts~~~sa~fity~a~faf~p~  241 (1062)
T KOG1912|consen  164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH--LERETATGNSTTSTPASAYFITYCAQFAFSPH  241 (1062)
T ss_pred             CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh--hhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence            99888888877888888887765422110  011111100000000  00000000000000      0 11  2233  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      -+.++-......+.++|++-..         ++.......+.+.-+.+-|+++...|.+.-.||.+.+|--+.
T Consensus       242 ~rn~lfi~~prellv~dle~~~---------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  242 WRNILFITFPRELLVFDLEYEC---------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhceEEEEeccceEEEcchhhc---------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            1223333455679999998665         566666667777888999999878999999999999997665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.32  E-value=1.7e-08  Score=94.82  Aligned_cols=273  Identities=14%  Similarity=0.154  Sum_probs=153.1

Q ss_pred             EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC---------CCccceEEEEEEEcCCCCcEEEEe-e
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---------DKEESFYTVSWACNVDGIPFLVAG-G  105 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~-~  105 (346)
                      ..+++++.   ++.++++-..++ |+++|.. +..+..+......         ..-.....+++.  +++. .|+++ .
T Consensus       571 ~gvavd~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd--~~gn-~LYVaDt  643 (1057)
T PLN02919        571 GKLAIDLL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN--AKKN-LLYVADT  643 (1057)
T ss_pred             ceEEEECC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe--CCCC-EEEEEeC
Confidence            35777762   356666665555 9999964 4443333221000         001123445554  7766 55554 4


Q ss_pred             cCCeEEEEEccCcceeeeeccC-----------------CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117          106 INGIIRVIDVSNEKLHKSFVGH-----------------GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      .++.|+++|+.++. +.++.+-                 -.....++++|.++.++++.+.++.|++||..++... .+.
T Consensus       644 ~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~  721 (1057)
T PLN02919        644 ENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS  721 (1057)
T ss_pred             CCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence            56789999987754 3333210                 1134689999966677778788899999999876543 221


Q ss_pred             cc------CC------CCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeecee--ecCCCCCCCCccceece
Q 019117          169 GA------GG------HRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFT--WTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       169 ~~------~~------~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  233 (346)
                      ..      .+      .-.....++++| ++. ++++-+.++.|++||+.+..........  .......+.... ....
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d-G~g~  799 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD-GVGS  799 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC-Cchh
Confidence            00      00      113456799999 555 6666677899999999864321100000  000000000000 0000


Q ss_pred             EEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc----ccccCCCcCeeEEEEeecCCcceEE
Q 019117          234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL----QKYPVPECDIWFIKFSCDFHYNAAA  307 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~l~  307 (346)
                      .....|   -..++++  |+++++-..+++|++||..++......+....-    ......-.....++++++|  ++++
T Consensus       800 ~~~l~~---P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG--~lyV  874 (1057)
T PLN02919        800 EVLLQH---PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG--RLFV  874 (1057)
T ss_pred             hhhccC---CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC--CEEE
Confidence            001112   2355665  778888888999999999876521111100000    0011122356789999999  6888


Q ss_pred             EEcCCCcEEEEEcCCCCc
Q 019117          308 IGNREGKIFVWELQSSPP  325 (346)
Q Consensus       308 ~~~~dg~i~iwd~~~~~~  325 (346)
                      +-+.++.|++||+.+++.
T Consensus       875 aDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        875 ADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCEEEEEECCCCcc
Confidence            889999999999998764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.2e-09  Score=94.03  Aligned_cols=159  Identities=17%  Similarity=0.121  Sum_probs=98.9

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE-
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV-  102 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-  102 (346)
                      .+..+...+...+|+|    +|+.|+..+.+    .|.+|++.++.... +..+     .+......|  +|+|+ .|+ 
T Consensus       193 ~l~~~~~~~~~p~wSp----DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~-----~g~~~~~~~--SpDG~-~la~  259 (430)
T PRK00178        193 TLLQSREPILSPRWSP----DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNF-----EGLNGAPAW--SPDGS-KLAF  259 (430)
T ss_pred             EEecCCCceeeeeECC----CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCC-----CCCcCCeEE--CCCCC-EEEE
Confidence            3445677889999999    77887765533    28899987775433 2211     112223444  59998 555 


Q ss_pred             EeecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC--CEEEEecCCCeeEEEecccCCCCcce
Q 019117          103 AGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE--SVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       103 ~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      +...+|  .|.+||+.+++... +..+........|+| +++.++..+ .++  .|.++|+.+++......    .....
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----~~~~~  333 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----VGNYN  333 (430)
T ss_pred             EEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCCc
Confidence            555555  68888988876543 444555667789999 666655444 343  57777887776433222    12233


Q ss_pred             EEEEecCCCCcEEEEEec-CC--eEEEEEccc
Q 019117          178 LSVDFHPSDIYRIASCGM-DN--TVKIWSMKE  206 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~  206 (346)
                      ....|+| +++.++..+. ++  .|.+||+.+
T Consensus       334 ~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        334 ARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             cceEECC-CCCEEEEEEccCCceEEEEEECCC
Confidence            4578999 6666665543 33  477888876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=2.9e-10  Score=88.11  Aligned_cols=165  Identities=18%  Similarity=0.418  Sum_probs=117.0

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .....+....|..+|..+-|+-    ..+.+++++.|.-..|-..+ +..+....- ...     -.++.+.    -. +
T Consensus       103 km~~~r~~~~h~~~v~~~if~~----~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~-----~t~~~~d----~~-~  167 (404)
T KOG1409|consen  103 KMTFLKDYLAHQARVSAIVFSL----THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETP-----ASALQFD----AL-Y  167 (404)
T ss_pred             hcchhhhhhhhhcceeeEEecC----CceeEEEeccccceEEEeeccCCcccceEe-ecc-----CCCCcee----eE-E
Confidence            3445556678999999999987    45889999988866666543 322222111 000     0001111    11 4


Q ss_pred             EEEeecCCeEEEEEc--cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCCcce
Q 019117          101 LVAGGINGIIRVIDV--SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNEV  177 (346)
Q Consensus       101 l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v  177 (346)
                      ...|...|.|.+-.+  +....+.++.+|.+.+.+++|.| ....|.+|..|..+.+||+--.+- ...+.   +|...|
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~---gh~~kV  243 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQ---GHNDKV  243 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeec---cchhhh
Confidence            455656666666554  44567888999999999999999 889999999999999999964332 22333   699999


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ..+...+ -...+++++.||.|.+|++..
T Consensus       244 ~~l~~~~-~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  244 QALSYAQ-HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence            9998886 778899999999999999986

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=2.3e-11  Score=112.49  Aligned_cols=185  Identities=13%  Similarity=0.249  Sum_probs=143.0

Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117           91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus        91 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  169 (346)
                      +.-+|... +.++|+.||.+++|....++.+..++. ....|+.+.|+. .++.+..+..||.+.+|... .++....+ 
T Consensus      2214 ~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~q- 2289 (2439)
T KOG1064|consen 2214 MTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQ- 2289 (2439)
T ss_pred             ecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccceeccc-
Confidence            33445555 889999999999999998887766642 347899999999 88899999999999999987 55555555 


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEEe---cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                        .|......+.|-.   ..+++++   .++.+.+||.-...                      .....-..|...++++
T Consensus      2290 --chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~----------------------~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2290 --CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP----------------------MNSLVHTCHDGGATVL 2342 (2439)
T ss_pred             --cCCccccceeeee---hhhhccccCCCCCcccchhcccCc----------------------ccceeeeecCCCceEE
Confidence              6888888898873   5666664   46789999976521                      1111227899999999


Q ss_pred             Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ++.  .++|++||.+|.|++||++..+         ..+.++.         +. ..  .++++|+..|.|+||++..-.
T Consensus      2343 ~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~-~~--~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LD-TR--EYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hh-hh--heeeccCcccceEEEEccccc
Confidence            998  5689999999999999999765         4555543         22 22  689999999999999998765


Q ss_pred             cce
Q 019117          325 PVL  327 (346)
Q Consensus       325 ~~~  327 (346)
                      .+.
T Consensus      2402 ll~ 2404 (2439)
T KOG1064|consen 2402 LLH 2404 (2439)
T ss_pred             hhh
Confidence            443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.29  E-value=1.5e-09  Score=88.55  Aligned_cols=263  Identities=11%  Similarity=0.077  Sum_probs=161.7

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC-
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-  108 (346)
                      ..-.-++..+.|||    .|.+|++....+|.+|.-.....+..+.       ...|..+.|+  |+++ ||.+-+..+ 
T Consensus        29 ~~~~~p~~~~~~SP----~G~~l~~~~~~~V~~~~g~~~~~l~~~~-------~~~V~~~~fS--P~~k-YL~tw~~~pi   94 (561)
T COG5354          29 ESENWPVAYVSESP----LGTYLFSEHAAGVECWGGPSKAKLVRFR-------HPDVKYLDFS--PNEK-YLVTWSREPI   94 (561)
T ss_pred             cccCcchhheeecC----cchheehhhccceEEccccchhheeeee-------cCCceecccC--cccc-eeeeeccCCc
Confidence            33566788999999    8899999999999999965544333332       2345556555  9998 999865443 


Q ss_pred             --------------eEEEEEccCcceeeeeccCCCc--eE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeE-EEeccc
Q 019117          109 --------------IIRVIDVSNEKLHKSFVGHGDS--IN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICI-LIFAGA  170 (346)
Q Consensus       109 --------------~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~  170 (346)
                                    .+.+||..++..+..+.....+  .. -+.|+. +..+++-.. ...+.|+++ ++... ..+.. 
T Consensus        95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~-  170 (561)
T COG5354          95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARVV-GSSLYIHEI-TDNIEEHPFKN-  170 (561)
T ss_pred             cChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhhc-cCeEEEEec-CCccccCchhh-
Confidence                          4999999999999988876655  44 677887 556555432 346999997 33322 12221 


Q ss_pred             CCCCcceEEEEecCC-CCcEEEE-----EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          171 GGHRNEVLSVDFHPS-DIYRIAS-----CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~-~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                       -....|....|+|. ++..|+.     .+.++.+++|.+.....                       +.+...-...-.
T Consensus       171 -lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-----------------------l~tk~lfk~~~~  226 (561)
T COG5354         171 -LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-----------------------LVTKNLFKVSGV  226 (561)
T ss_pred             -ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-----------------------eeeeeeEeeccc
Confidence             12356888889983 2333332     35677888888875222                       111111111112


Q ss_pred             EEEec--CCEEEEEe-----------ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          245 CNRWL--GDFILSKS-----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       245 ~~~~~--~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      .+.|.  |++|+.--           .+..+.|+++....          +.....-.++|...+|.|.+..--+++|-.
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~  296 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPVEKDLKDPVHDFTWEPLSSRFAVISGYM  296 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cceeccccccceeeeecccCCceeEEeccc
Confidence            33443  55443321           13457778777432          111113467899999999996334455568


Q ss_pred             CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          312 EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +-.+.++|+...  +.....+..-+.+.|||.++|
T Consensus       297 pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~  329 (561)
T COG5354         297 PASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERY  329 (561)
T ss_pred             ccceeecccccc--eEEecCCcccccccccCcccE
Confidence            889999999876  222222333455667776664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3e-09  Score=87.81  Aligned_cols=263  Identities=12%  Similarity=0.107  Sum_probs=161.2

Q ss_pred             eEEEEEEeecCCCccEEEEEcC------------CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGG------------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~------------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      |.-+.|||    ..++|+|-+.            +.+.|||+.+|...+.+..+...  -..-....|+  .|++ |+|-
T Consensus       252 Vq~idfSP----~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~--~~~WP~frWS--~DdK-y~Ar  322 (698)
T KOG2314|consen  252 VQFIDFSP----NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP--YLKWPIFRWS--HDDK-YFAR  322 (698)
T ss_pred             ceeeecCC----ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC--ccccceEEec--cCCc-eeEE
Confidence            77899999    7799999764            12999999999998888765221  1122224565  7888 8887


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      -.. ..|.||+..+-.++..-.-.-..|....|+| .+++||-=..     -..+.+-.+.+++.+++-.   -+.-.=.
T Consensus       323 m~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n---lfnVsDc  397 (698)
T KOG2314|consen  323 MTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN---LFNVSDC  397 (698)
T ss_pred             ecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeecc---ceeeecc
Confidence            765 5699999766444332222346788999999 7777764322     1346666666666665544   2322223


Q ss_pred             EEEecCCCCcEEEEE----------ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117          179 SVDFHPSDIYRIASC----------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW  248 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  248 (346)
                      .|.|-. +|.+|+.-          +.-..+.|+.++..                      ..++.... -...|...+|
T Consensus       398 kLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK----------------------dIpve~ve-lke~vi~FaW  453 (698)
T KOG2314|consen  398 KLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK----------------------DIPVEVVE-LKESVIAFAW  453 (698)
T ss_pred             EEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeecc----------------------CCCceeee-cchheeeeee
Confidence            455654 66666532          11224555655551                      12222222 2455667777


Q ss_pred             c--CCEEEEEee---cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE---cCCCcEEEEEc
Q 019117          249 L--GDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWEL  320 (346)
Q Consensus       249 ~--~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~---~~dg~i~iwd~  320 (346)
                      .  |+.+++-+.   ..++.+|.+.+...     ...++..+..  ...+.+-|+|.|  ++++.+   |..|.+.++|+
T Consensus       454 EP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG--~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  454 EPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKG--RFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             ccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCC--cEEEEEEecccccceEEEec
Confidence            6  666655443   46789998885321     2234444443  456778999999  555554   45789999998


Q ss_pred             CCCCcceeeeeeee--EEEEEecCCCCC
Q 019117          321 QSSPPVLIARLICF--SLHVKYNPQSVY  346 (346)
Q Consensus       321 ~~~~~~~~~~~~~~--~~~~~~spdg~~  346 (346)
                      .-..... .....|  .+.+.|.|.|||
T Consensus       525 ~~a~~k~-~~~~eh~~at~veWDPtGRY  551 (698)
T KOG2314|consen  525 DYADLKD-TASPEHFAATEVEWDPTGRY  551 (698)
T ss_pred             chhhhhh-ccCccccccccceECCCCCE
Confidence            7533222 222222  467999999998

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.28  E-value=1.3e-10  Score=91.86  Aligned_cols=151  Identities=17%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcce----eeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEE
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                      .++.++ ++|.+..+....++++.....    ..... -...-+.+.|...+  .......++...+.+|....+.+...
T Consensus        70 ~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~  147 (390)
T KOG3914|consen   70 TSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI  147 (390)
T ss_pred             cCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence            346677 999988888877777754432    22222 12223344444412  22223345556677777665555555


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEE
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDC  245 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  245 (346)
                      +    +|-+.++.++|+| +++.++++..|..|++-....                       ...+..+ .+|...|..
T Consensus       148 l----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa-----------------------~f~IesfclGH~eFVS~  199 (390)
T KOG3914|consen  148 L----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA-----------------------TFVIESFCLGHKEFVST  199 (390)
T ss_pred             h----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCc-----------------------ccchhhhccccHhheee
Confidence            5    6999999999999 889999999999999976665                       2223333 359999999


Q ss_pred             EEec-CCEEEEEeecCeEEEEcCCCCCCC
Q 019117          246 NRWL-GDFILSKSVDNEIVLWEPKMKEQS  273 (346)
Q Consensus       246 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~  273 (346)
                      ++.- +..|+++|.|+++++||+.+++..
T Consensus       200 isl~~~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  200 ISLTDNYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeeccCceeeecCCCCcEEEEecccCCcc
Confidence            9988 677899999999999999999854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.7e-09  Score=92.87  Aligned_cols=158  Identities=14%  Similarity=0.117  Sum_probs=93.5

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      ..+...+.+..|+|    +|+.|+..+.+    .|.+||+.+++... +..+     ........|  +|||+.++++.+
T Consensus       214 ~~~~~~~~~p~wSP----DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-----~g~~~~~~w--SPDG~~La~~~~  281 (448)
T PRK04792        214 LRSPEPLMSPAWSP----DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-----PGINGAPRF--SPDGKKLALVLS  281 (448)
T ss_pred             ecCCCcccCceECC----CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-----CCCcCCeeE--CCCCCEEEEEEe
Confidence            34456778899999    78877765432    28888987765422 2211     111223444  599993444556


Q ss_pred             cCCe--EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC--CEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          106 INGI--IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE--SVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 ~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      .+|.  |.++|+.+++.. .+..+........|+| +++.++..+ .++  .|.++|+.+++......    ........
T Consensus       282 ~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~~~~~  355 (448)
T PRK04792        282 KDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQNLGG  355 (448)
T ss_pred             CCCCeEEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCCCcCe
Confidence            6664  777788777643 3444555667889999 666665444 344  46666777666433221    22223456


Q ss_pred             EecCCCCcEEEEEec-CCe--EEEEEccc
Q 019117          181 DFHPSDIYRIASCGM-DNT--VKIWSMKE  206 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~-d~~--i~iwd~~~  206 (346)
                      +|+| ++++++..+. ++.  |.++|+.+
T Consensus       356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        356 SITP-DGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             eECC-CCCEEEEEEecCCceEEEEEECCC
Confidence            8999 6666655443 444  44456655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=8.1e-09  Score=88.02  Aligned_cols=201  Identities=11%  Similarity=0.103  Sum_probs=111.2

Q ss_pred             cccCCCceEEEEEEeecCCCccE--E-EEEcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNV--F-ATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~--l-a~~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      |......+..-+|+|    ||+.  + .+...++   |.+.++..++...... +     .......+|  +|||+ .|+
T Consensus       180 lt~~~~~~~sP~wSP----DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~-----~g~~~~p~w--SPDG~-~La  246 (428)
T PRK01029        180 LTQEHSLSITPTWMH----IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-L-----QGNQLMPTF--SPRKK-LLA  246 (428)
T ss_pred             cccCCCCcccceEcc----CCCceEEEEEEccCCCceEEEEECCCCCceEeec-C-----CCCccceEE--CCCCC-EEE
Confidence            333445566779999    5553  2 2333332   8888887765433322 2     112222444  59998 555


Q ss_pred             Eee-cCC----eEEEEEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEe--cCC-CeeEEEeccc
Q 019117          103 AGG-ING----IIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN--VQT-GICILIFAGA  170 (346)
Q Consensus       103 ~~~-~dg----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd--~~~-~~~~~~~~~~  170 (346)
                      ..+ .+|    .+.+|++..+   +..+....+.......+|+| +++.|+..+ .+|...+|.  +.. +.....+.  
T Consensus       247 f~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt--  323 (428)
T PRK01029        247 FISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT--  323 (428)
T ss_pred             EEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec--
Confidence            443 223    3444676653   33333333333456789999 777666544 567555554  432 22333443  


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEec-C--CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGM-D--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  247 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  247 (346)
                       .+...+....|+| +++.|+..+. +  ..|.+||+...+.                        ..+......+....
T Consensus       324 -~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~------------------------~~Lt~~~~~~~~p~  377 (428)
T PRK01029        324 -KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD------------------------YQLTTSPENKESPS  377 (428)
T ss_pred             -cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe------------------------EEccCCCCCccceE
Confidence             2445667889999 7776665543 2  3688999877321                        11221222345566


Q ss_pred             ec--CCEEEEEee---cCeEEEEcCCCCC
Q 019117          248 WL--GDFILSKSV---DNEIVLWEPKMKE  271 (346)
Q Consensus       248 ~~--~~~l~~~~~---d~~i~iwd~~~~~  271 (346)
                      |+  |+.|+....   ...|.++|+.+++
T Consensus       378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        378 WAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            76  666654332   3568888887765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=6e-09  Score=86.07  Aligned_cols=257  Identities=11%  Similarity=0.142  Sum_probs=152.8

Q ss_pred             EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----------
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----------  106 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----------  106 (346)
                      +-+.|||    .|.+|+|--..||.+|-   |.....++.|.   |. .|.-+.|+  |..+ ||++-+.          
T Consensus       214 tyv~wSP----~GTYL~t~Hk~GI~lWG---G~~f~r~~RF~---Hp-~Vq~idfS--P~Ek-YLVT~s~~p~~~~~~d~  279 (698)
T KOG2314|consen  214 TYVRWSP----KGTYLVTFHKQGIALWG---GESFDRIQRFY---HP-GVQFIDFS--PNEK-YLVTYSPEPIIVEEDDN  279 (698)
T ss_pred             eeEEecC----CceEEEEEeccceeeec---CccHHHHHhcc---CC-CceeeecC--Cccc-eEEEecCCccccCcccC
Confidence            4689999    78999999999999998   44444444442   22 24445555  8888 9998653          


Q ss_pred             -CCeEEEEEccCcceeeeeccCCC---ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          107 -NGIIRVIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       107 -dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                       ...++|||+.+|...+.+....+   .-.-+.||. ++.++|--.. ..|.|++..+..++..-.   -.-..|....|
T Consensus       280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Ks---lki~gIr~Fsw  354 (698)
T KOG2314|consen  280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKS---LKISGIRDFSW  354 (698)
T ss_pred             CCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccc---cCCccccCccc
Confidence             25799999999998888765222   223578888 7888887665 569999977643332221   24567899999


Q ss_pred             cCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          183 HPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       183 ~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      +| .+.+|+-=..     -..+.+-.+.+.                       ..+++...+.-.=..+.|.  |++|+.
T Consensus       355 sP-~~~llAYwtpe~~~~parvtL~evPs~-----------------------~~iRt~nlfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  355 SP-TSNLLAYWTPETNNIPARVTLMEVPSK-----------------------REIRTKNLFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             CC-CcceEEEEcccccCCcceEEEEecCcc-----------------------ceeeeccceeeeccEEEeccCCcEEEE
Confidence            99 6555543211     112222222221                       1122222222111223332  566554


Q ss_pred             E----------eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC--CCcEEEEEcCC-
Q 019117          256 K----------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR--EGKIFVWELQS-  322 (346)
Q Consensus       256 ~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~--dg~i~iwd~~~-  322 (346)
                      -          +.-..+.|+.++....        ++..... ...|...+|-|.|. ++.+..+.  -.++.+|.+++ 
T Consensus       411 kvdR~tK~~~~g~f~n~eIfrireKdI--------pve~vel-ke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~  480 (698)
T KOG2314|consen  411 KVDRHTKSKVKGQFSNLEIFRIREKDI--------PVEVVEL-KESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETN  480 (698)
T ss_pred             EEEeeccccccceEeeEEEEEeeccCC--------Cceeeec-chheeeeeeccCCC-eEEEEEccccccceeEEEeecC
Confidence            3          2223466676665542        2222222 34788889999995 33333332  34788998884 


Q ss_pred             -CCcceeeeee-eeEEEEEecCCCCC
Q 019117          323 -SPPVLIARLI-CFSLHVKYNPQSVY  346 (346)
Q Consensus       323 -~~~~~~~~~~-~~~~~~~~spdg~~  346 (346)
                       .++..+..+. .+.+.+.|+|.|++
T Consensus       481 ~~~~~lVk~~dk~~~N~vfwsPkG~f  506 (698)
T KOG2314|consen  481 IKKPSLVKELDKKFANTVFWSPKGRF  506 (698)
T ss_pred             CCchhhhhhhcccccceEEEcCCCcE
Confidence             2233333333 34688999999985

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=4.7e-11  Score=92.49  Aligned_cols=154  Identities=14%  Similarity=0.227  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-----ee
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-----IC  163 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~  163 (346)
                      ++|+.+--|- . ++.+.+-.+-+-++.++-. +.+. ..+.|.++.|.. .++++..|...|.|...|++.+     .+
T Consensus       217 CawSlni~gy-h-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  217 CAWSLNIMGY-H-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhcccee-e-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence            4666555554 3 5555677788889887653 3333 567899999998 7899999999999999999854     45


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ...+-    |.+.|+++..-..++.+|++.+.+|+|++||++..+.                    +..+.++.+|.+.-
T Consensus       292 a~rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------------------~~~V~qYeGHvN~~  347 (425)
T KOG2695|consen  292 AQRLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------------------KKSVMQYEGHVNLS  347 (425)
T ss_pred             eEEEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--------------------ccceeeeecccccc
Confidence            56665    9999999987754678899999999999999998332                    23477788887765


Q ss_pred             EEEEec----CCEEEEEeecCeEEEEcCCCCC
Q 019117          244 DCNRWL----GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       244 ~~~~~~----~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      .-+-+.    ...+++++.|...|||.++.+.
T Consensus       348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             cccccccccccceEEEccCeeEEEEEecccCc
Confidence            555554    5688889999999999999887

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=6.3e-09  Score=84.43  Aligned_cols=208  Identities=13%  Similarity=0.080  Sum_probs=144.6

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeecc------C--C---CceEEEE-EeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG------H--G---DSINEIR-TQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~--~---~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      .||+ .++- +..|.|.+||..+.+..+.--+      .  .   .+..-+. |++.++.+++..|. |...+.+...+-
T Consensus       276 sDGk-rIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~  352 (668)
T COG4946         276 SDGK-RIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY  352 (668)
T ss_pred             CCCc-EEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence            5777 3332 3458899999877653221100      0  0   0111111 44556888888886 778888876555


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      .++.     ++.+.|+-..+.- +++-++.|..|| .+-++|.+..+                        +..+...-+
T Consensus       353 ~iqv-----~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------------------------~kr~e~~lg  402 (668)
T COG4946         353 SIQV-----GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------------------------VKRIEKDLG  402 (668)
T ss_pred             eEEc-----CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce------------------------EEEeeCCcc
Confidence            4433     4777898888876 666888999999 89999999832                        334445556


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC----cE
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----KI  315 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg----~i  315 (346)
                      .|.++..+  |++++.+.....+-+.|+.+++.         ...-+...+-|+.++|+|++  +++|-+--+|    .|
T Consensus       403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv---------~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~I  471 (668)
T COG4946         403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSI  471 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe---------eEecccccceeEEEEEcCCc--eeEEEecCcceeeeeE
Confidence            67777777  78899999999999999999862         11222345679999999999  7899877655    79


Q ss_pred             EEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          316 FVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       316 ~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +++|+.+++........++-.+-+|.|||+|
T Consensus       472 klydm~~~Kiy~vTT~ta~DfsPaFD~d~ry  502 (668)
T COG4946         472 KLYDMDGGKIYDVTTPTAYDFSPAFDPDGRY  502 (668)
T ss_pred             EEEecCCCeEEEecCCcccccCcccCCCCcE
Confidence            9999999876555554555566788999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=7.5e-07  Score=70.27  Aligned_cols=281  Identities=16%  Similarity=0.154  Sum_probs=165.4

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      -.+.+.++-|+|+|    +++.|.++..+    +|..|.+... ..+..+......  +.....++  .+++|+ +++++
T Consensus        36 v~~~~nptyl~~~~----~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvs--vd~~g~-~vf~A  106 (346)
T COG2706          36 VAELGNPTYLAVNP----DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVS--VDEDGR-FVFVA  106 (346)
T ss_pred             ccccCCCceEEECC----CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEE--ECCCCC-EEEEE
Confidence            34566788899999    66777777655    2888887753 344444433221  22223344  459998 77776


Q ss_pred             e-cCCeEEEEEccC-cceee--eeccCCCc----------eEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecc
Q 019117          105 G-INGIIRVIDVSN-EKLHK--SFVGHGDS----------INEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAG  169 (346)
Q Consensus       105 ~-~dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~  169 (346)
                      . ..|.|.++-++. |.+..  .+..|.+.          +....+.| ++++|++..- --.|.+|++..++....-..
T Consensus       107 nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~  185 (346)
T COG2706         107 NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA  185 (346)
T ss_pred             EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccc
Confidence            5 468999999865 43221  12235555          88999999 8888887643 23589999997765433221


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW  248 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  248 (346)
                      .-......+.|.|+| ++++..... .+++|.+|...........--.....+..+             .-..+...|..
T Consensus       186 ~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF-------------~g~~~~aaIhi  251 (346)
T COG2706         186 EVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF-------------TGTNWAAAIHI  251 (346)
T ss_pred             ccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc-------------CCCCceeEEEE
Confidence            113566789999999 777665554 589999999988321111110000111110             11223444555


Q ss_pred             c--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC-CCcEEEEEcCC--
Q 019117          249 L--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EGKIFVWELQS--  322 (346)
Q Consensus       249 ~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~iwd~~~--  322 (346)
                      +  |++|.++.. ...|.+|.+.....     ....+.....+........|++++  ++|+++.+ ...|.+|....  
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F~i~~~g--~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDFNINPSG--RFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccceeCCCC--CEEEEEccCCCcEEEEEEcCCC
Confidence            4  788877754 34788887765421     122333333344446788899999  66766664 44688887655  


Q ss_pred             CCcceeee--eeeeEEEEEec
Q 019117          323 SPPVLIAR--LICFSLHVKYN  341 (346)
Q Consensus       323 ~~~~~~~~--~~~~~~~~~~s  341 (346)
                      |++.....  ....+.|+.|.
T Consensus       325 G~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         325 GRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             ceEEecccccCCCCcEEEEEc
Confidence            43322222  22335677764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.5e-10  Score=95.45  Aligned_cols=174  Identities=10%  Similarity=0.113  Sum_probs=124.6

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eee-eEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIA-ALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .++.+.||+..|..++--.    +.+-|++++.|+ |++|.++... .+. ..-.+....|..+|..+.|.  .+.+ ++
T Consensus       727 rL~nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--~~lr-~i  799 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--ADLR-SI  799 (1034)
T ss_pred             eeecccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--eccc-ee
Confidence            3456799999999887554    567899999998 9999987432 221 22335556688999999887  5555 66


Q ss_pred             EEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCC-CCceEEEe-eCCCCEEEEecCCCeeEEEeccc--CCCCc
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPL-KPSLVVSA-SKDESVRLWNVQTGICILIFAGA--GGHRN  175 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~~  175 (346)
                      +++  ||.|++||.--++.+..+..  ..+.+..+..-++ +..++..| +...+|+++|.+..+....++..  .+...
T Consensus       800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA  877 (1034)
T ss_pred             eec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence            655  78999999988876653321  2233444444442 33444444 78899999999988777666543  24556


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  208 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  208 (346)
                      -+++++..+ .|++++.+-..|.|.+.|.+++.
T Consensus       878 ~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  878 LTRAIAVAD-KGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             heeEEEecc-CcchhhHHhcCCcEEEEecCCCc
Confidence            789999998 89999999999999999999843

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.17  E-value=1.1e-08  Score=76.94  Aligned_cols=253  Identities=12%  Similarity=0.049  Sum_probs=151.3

Q ss_pred             EEEEEeecC-CCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           38 AVVFNFIDS-RYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        38 ~~~~~p~~~-~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      .+.|-|..- ....+||.|+..+ ..+|.+.+.+.. .....     +...|.-+.-.+  +.+.-+..++.|.++++.+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~-----snn~v~~~~r~c--d~~~~~~i~sndht~k~~~  144 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV-----SNNDVTLVKRYC--DLKFPLNIASNDHTGKTMV  144 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecc-----cccchhhhhhhc--ccccceeeccCCcceeEEE
Confidence            466666110 0124677776666 999998865432 22222     222222221111  1122467788899999988


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                      +.-+.....+.-..-.+.++++++ ++.++++.++...|..|.+... +.+..+... .....=.+..|+. ....++++
T Consensus       145 ~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-~t~D~gF~~S~s~-~~~~FAv~  221 (344)
T KOG4532|consen  145 VSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-PTSDHGFYNSFSE-NDLQFAVV  221 (344)
T ss_pred             EecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEec-ccCCCceeeeecc-CcceEEEE
Confidence            765443222221112378999999 8999999999999999988643 333222211 2334456788986 88899999


Q ss_pred             ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-C---CEEEEEeecCeEEEEcCCC
Q 019117          194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G---DFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---~~l~~~~~d~~i~iwd~~~  269 (346)
                      ..||++.|||++.....+.                  ....+-..|.+.++.+.|+ +   ++|...-.-+.+.+.|+++
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~------------------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMA------------------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             ecCCcEEEEEecccccchh------------------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            9999999999998432111                  1122334588899999998 2   3555555567899999999


Q ss_pred             CCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          270 KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      .+.........  ..+..| ...|....|+.+++  -+.+.+++ .+.=|++.+.
T Consensus       284 ~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~~n~--s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  284 YVNHQVIVIPD--DVERKHNTQHIFGTNFNNENE--SNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             CceeeEEecCc--cccccccccccccccccCCCc--ccccccch-hhheeecccc
Confidence            87422111110  111122 23477888888874  33333333 3555666554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=8e-10  Score=93.95  Aligned_cols=231  Identities=13%  Similarity=0.211  Sum_probs=155.5

Q ss_pred             ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc---------------eeeeeccCCCceEEEEEeCCCCceEEEe
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------------LHKSFVGHGDSINEIRTQPLKPSLVVSA  147 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~  147 (346)
                      .....+++|.  .+.. +++.|+.||.+++..+.+..               .-+++.+|+..|.-+.|+. ..+.|-+.
T Consensus        14 nvkL~c~~WN--ke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS   89 (1189)
T KOG2041|consen   14 NVKLHCAEWN--KESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS   89 (1189)
T ss_pred             CceEEEEEEc--ccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence            3456677776  5555 99999999999999876532               2356789999999999998 88899999


Q ss_pred             eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          148 SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       148 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                      ..+|.|.+|-+-.+.-...+... ...+.|.+++|.. +|..++..-.||.|.+=.+...+.                  
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI------------------  149 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI------------------  149 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhC-cCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee------------------
Confidence            99999999999887655544321 2567899999997 899999999999998876665211                  


Q ss_pred             cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC--ccccccccccCCCcCeeEEEEe-----
Q 019117          228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADILQKYPVPECDIWFIKFS-----  298 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s-----  298 (346)
                            ..-.........+.|+  .+.++.+-..|.+.++|....-.....  ........+......|..+.|.     
T Consensus       150 ------wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  150 ------WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             ------cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence                  1000111112345565  345566666788999987654211000  0000001111111234444443     


Q ss_pred             ---ecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          299 ---CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       299 ---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                         ||.  ..|+++-.+|.+.|-.-.+......+.....+....|||+|.
T Consensus       224 ~v~pdr--P~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~  271 (1189)
T KOG2041|consen  224 PVPPDR--PRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGA  271 (1189)
T ss_pred             cCCCCC--CEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCc
Confidence               344  689999999999998777665556667777888999999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.16  E-value=1.1e-07  Score=77.48  Aligned_cols=143  Identities=15%  Similarity=0.080  Sum_probs=103.0

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      -+|...|.-..+.-    +++-++.|..|+  +.|||..+++..+...      .-+.|.++..+  ++|+ +++.+...
T Consensus       356 v~~~~~VrY~r~~~----~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------~lg~I~av~vs--~dGK-~~vvaNdr  422 (668)
T COG4946         356 VGKKGGVRYRRIQV----DPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------DLGNIEAVKVS--PDGK-KVVVANDR  422 (668)
T ss_pred             cCCCCceEEEEEcc----CCcceEEeccCCceEEEEecCCceEEEeeC------CccceEEEEEc--CCCc-EEEEEcCc
Confidence            45677777777765    345666666665  9999977665433322      34566667666  9999 99999988


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC----CEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      ..|-+.|+++++....-+...+-|+.+.|+| ++.++|-+--+|    .|+++|+..++....-.    ....=.+=+|.
T Consensus       423 ~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaFD  497 (668)
T COG4946         423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAFD  497 (668)
T ss_pred             eEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCcccC
Confidence            9999999999987666666778999999999 899998776554    68999998777654433    33333455678


Q ss_pred             CCCCcEEE
Q 019117          184 PSDIYRIA  191 (346)
Q Consensus       184 ~~~~~~l~  191 (346)
                      | ++++|.
T Consensus       498 ~-d~ryLY  504 (668)
T COG4946         498 P-DGRYLY  504 (668)
T ss_pred             C-CCcEEE
Confidence            7 665554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.15  E-value=6.8e-08  Score=81.75  Aligned_cols=233  Identities=11%  Similarity=0.018  Sum_probs=133.7

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      ..++.++.++ +..+|..+|+.+.....      ...+.+...   -.+. .++.+..+|.+..||.++++.+..+....
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~~~p~---v~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~  175 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKL------SSEVLSPPL---VANG-LVVVRTNDGRLTALDAATGERLWTYSRVT  175 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeecc------CceeecCCE---EECC-EEEEECCCCeEEEEEcCCCceeeEEccCC
Confidence            3444444444 77777767766544331      111111111   1233 56777789999999999999887765432


Q ss_pred             CceE-----EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cc---eEEEEecC-CCCcEEEEEecCCe
Q 019117          129 DSIN-----EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NE---VLSVDFHP-SDIYRIASCGMDNT  198 (346)
Q Consensus       129 ~~v~-----~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~---v~~~~~~~-~~~~~l~s~~~d~~  198 (346)
                      ..+.     .....  + ..++.+..++.+..+|.++|+.+.......... ..   ...+.-+| -.+..++.++.+|.
T Consensus       176 ~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~  252 (377)
T TIGR03300       176 PALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR  252 (377)
T ss_pred             CceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE
Confidence            2111     11121  2 467778888999999999998776543210000 00   00110011 02346777788999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      +..||..+++...                       ....  .........++.++.++.||.+..+|..+++.      
T Consensus       253 l~a~d~~tG~~~W-----------------------~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~------  301 (377)
T TIGR03300       253 VAALDLRSGRVLW-----------------------KRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSE------  301 (377)
T ss_pred             EEEEECCCCcEEE-----------------------eecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcE------
Confidence            9999998743211                       1110  01122233477888888999999999988863      


Q ss_pred             ccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          279 ADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       279 ~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                         +.+... ..........  .+  ..|++++.+|.|+++|..+++.+......+
T Consensus       302 ---~W~~~~~~~~~~ssp~i--~g--~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       302 ---LWKNDELKYRQLTAPAV--VG--GYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             ---EEccccccCCccccCEE--EC--CEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence               222211 1111111122  23  478889999999999999998766655433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=8.9e-09  Score=87.82  Aligned_cols=272  Identities=11%  Similarity=0.052  Sum_probs=173.5

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEee----------eecCCCccceEEEEEEEcCCCCcEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS----------YVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .....|++|+.    ...++|.|+.|| +++..+.+...-....+          ...++|...|..+.|.  .+.+ .|
T Consensus        14 nvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN--e~~Q-KL   86 (1189)
T KOG2041|consen   14 NVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN--ENNQ-KL   86 (1189)
T ss_pred             CceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec--cccc-cc
Confidence            34578999997    668999999999 88887765432211111          1224588999999996  4444 78


Q ss_pred             EEeecCCeEEEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      -+...+|.|.+|-+-.+.-...+  ....+.|.+++|+. ++..++....||.|.+=.+. |..+..-.   -.......
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd-GNRIwgKe---Lkg~~l~h  161 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD-GNRIWGKE---LKGQLLAH  161 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec-cceecchh---cchheccc
Confidence            99999999999999877533322  12456789999999 89999999999999887765 44333221   12233457


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccc-eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-C-------
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFW-TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G-------  250 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-------  250 (346)
                      +.|++ +...++.+-..|.+.+||....- ..+.......             -...+...+..|..+.|. |       
T Consensus       162 v~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn-------------~tg~~s~~~~kia~i~w~~g~~~~v~p  227 (1189)
T KOG2041|consen  162 VLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVN-------------GTGIFSNFPTKIAEIEWNTGPYQPVPP  227 (1189)
T ss_pred             eeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEe-------------eeeeecCCCccccceeeccCccccCCC
Confidence            88998 87878888888999999987611 1111111000             000111112234555554 1       


Q ss_pred             --CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC---------cEEEEE
Q 019117          251 --DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---------KIFVWE  319 (346)
Q Consensus       251 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---------~i~iwd  319 (346)
                        -.|+++-..|.+.|-.-.+...        ++-. . -...+..+.|+++|  .+|++++.+.         .|.+|.
T Consensus       228 drP~lavcy~nGr~QiMR~eND~~--------Pvv~-d-tgm~~vgakWnh~G--~vLAvcG~~~da~~~~d~n~v~Fys  295 (1189)
T KOG2041|consen  228 DRPRLAVCYANGRMQIMRSENDPE--------PVVV-D-TGMKIVGAKWNHNG--AVLAVCGNDSDADEPTDSNKVHFYS  295 (1189)
T ss_pred             CCCEEEEEEcCceehhhhhcCCCC--------CeEE-e-cccEeecceecCCC--cEEEEccCcccccCccccceEEEec
Confidence              2688888888887766544321        1111 1 12467888999999  7899988643         455555


Q ss_pred             cCCCCcceeeeeeee-EEEEEecCC
Q 019117          320 LQSSPPVLIARLICF-SLHVKYNPQ  343 (346)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~spd  343 (346)
                      . -|+.+..++.++. ++.++|--.
T Consensus       296 p-~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  296 P-YGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             c-chhheEEEecCCceeeeeEEcCC
Confidence            3 3455556666554 666777543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.12  E-value=4.9e-08  Score=77.08  Aligned_cols=229  Identities=13%  Similarity=0.026  Sum_probs=127.9

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL  139 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  139 (346)
                      |..||..+++.+..... . . .........+   +++. .+++++.++.|..||..+|+.+..+.. .+.+......  
T Consensus         5 l~~~d~~tG~~~W~~~~-~-~-~~~~~~~~~~---~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--   74 (238)
T PF13360_consen    5 LSALDPRTGKELWSYDL-G-P-GIGGPVATAV---PDGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--   74 (238)
T ss_dssp             EEEEETTTTEEEEEEEC-S-S-SCSSEEETEE---EETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--
T ss_pred             EEEEECCCCCEEEEEEC-C-C-CCCCccceEE---EeCC-EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--
Confidence            77777777776665542 1 0 0111111112   3455 677878999999999999998877764 2222211122  


Q ss_pred             CCceEEEeeCCCCEEEEecCCCeeEEEe-cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117          140 KPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  218 (346)
                      .+..++.++.++.|..+|..+|+.+... ................. .+..++.+..++.|..+|+++++..........
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            3456666667889999999999999884 32100011112222222 356777888899999999998554222211000


Q ss_pred             CCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCe-EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE
Q 019117          219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  297 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  297 (346)
                      ..            ...+.........+.+.+..+..++.++. +.+ |+.+++         .+....  ...+..+ .
T Consensus       154 ~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~---------~~w~~~--~~~~~~~-~  208 (238)
T PF13360_consen  154 RG------------SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE---------KLWSKP--ISGIYSL-P  208 (238)
T ss_dssp             -S------------S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE---------EEEEEC--SS-ECEC-E
T ss_pred             CC------------CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC---------EEEEec--CCCccCC-c
Confidence            00            00000001111233333447777777775 555 998876         222211  1122221 3


Q ss_pred             eecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          298 SCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       298 s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      ..++  ..|+.++.++.|..||+++++.+
T Consensus       209 ~~~~--~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  209 SVDG--GTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ECCC--TEEEEEETTTEEEEEETTTTEEE
T ss_pred             eeeC--CEEEEEeCCCEEEEEECCCCCEE
Confidence            3444  46777778999999999999754

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=2.7e-09  Score=79.81  Aligned_cols=143  Identities=13%  Similarity=0.190  Sum_probs=95.7

Q ss_pred             EEEEeecCCeEEEEEccCcce-eeeecc-CCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecCCCeeEEEecccCC
Q 019117          100 FLVAGGINGIIRVIDVSNEKL-HKSFVG-HGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                      -++++..||.+.+.+.+.-.. ...+.. |.+. .+.+... .++.+.++.-     -+..+.|+++..+.+..-.   .
T Consensus       103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~  177 (319)
T KOG4714|consen  103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---K  177 (319)
T ss_pred             ceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCcceEeeccceeeecccccccccccc---c
Confidence            599999999999999765211 111211 2222 1222222 3344444321     1234556654333222211   2


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---  249 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---  249 (346)
                      ....|.+++-+|....++++|+.||.+.+||.++.                      ..+...+..|+..|..+.|+   
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----------------------~~p~S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----------------------AMPVSLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccc----------------------cchHHHHHHhhhhhhheeccCCC
Confidence            33459999999977788899999999999999983                      34566778899999999998   


Q ss_pred             CCEEEEEeecCeEEEEcCCC
Q 019117          250 GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~  269 (346)
                      +..|+++++||.+-.||..+
T Consensus       236 p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chheeEecCCCcEEEEcCCC
Confidence            78999999999999999884

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=2.2e-10  Score=88.86  Aligned_cols=158  Identities=11%  Similarity=0.076  Sum_probs=118.9

Q ss_pred             EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117          145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  224 (346)
Q Consensus       145 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (346)
                      ++.+.+..|-+-|+.++-. +.|.    ..+.|.++.|.. .+.+++.|...|.|..+|++....               
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq---------------  286 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ---------------  286 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc---------------
Confidence            5556677888889887643 3443    567899999985 789999999999999999998310               


Q ss_pred             CCccceeceEEEeecccceEEEE---ecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117          225 PTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                         . .......-.|...|+++.   |++++|++.+.+|+|++||++.-+      ...-+..+.+|...-..+-+.-+.
T Consensus       287 ---G-~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K------~~~~V~qYeGHvN~~a~l~~~v~~  356 (425)
T KOG2695|consen  287 ---G-NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK------CKKSVMQYEGHVNLSAYLPAHVKE  356 (425)
T ss_pred             ---C-CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh------cccceeeeeccccccccccccccc
Confidence               0 112234456888888865   458999999999999999999766      222477888887666566666565


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          302 HYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      +...+++++.|...+||.+..+.++.....+.
T Consensus       357 eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            55789999999999999999998776655543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=1.3e-09  Score=92.93  Aligned_cols=201  Identities=21%  Similarity=0.373  Sum_probs=141.3

Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeeccCC--CceEEEEEeCC--CCceEEEeeCCCCEEEEecC
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHG--DSINEIRTQPL--KPSLVVSASKDESVRLWNVQ  159 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~--~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~  159 (346)
                      .+.++++.  |-|+ -++.++.-| +.+-|+... .+.+-+. |.  -.|..+.|+|.  ....+++.+. ..-.+|++.
T Consensus        26 ~~~a~si~--p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA   99 (1081)
T KOG0309|consen   26 GFNAVSIN--PSGR-DIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLA   99 (1081)
T ss_pred             cccceeec--cccc-hhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhh
Confidence            34445554  7787 778888776 556666543 3333332 32  35677788773  2345555554 455689885


Q ss_pred             CC--eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          160 TG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       160 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      ..  +.+.-+..  +|...|+.+.|+|+....+++++.|-.+..||+++.                      ..++....
T Consensus       100 ~ss~~aIef~lh--ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----------------------~~p~ys~~  155 (1081)
T KOG0309|consen  100 KSSSNAIEFVLH--GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----------------------HRPFYSTS  155 (1081)
T ss_pred             cCCccceEEEEe--cCccceeccccCCCCCcceeeccccccceeeeccCC----------------------Ccceeeee
Confidence            32  33332222  799999999999988999999999999999999993                      34555665


Q ss_pred             ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117          238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  315 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  315 (346)
                      .-......+.|+  .-.+++.+..+.|++||.+.+.        .++..+++|...|..++|..--. ..+.+++.||+|
T Consensus       156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tv  226 (1081)
T KOG0309|consen  156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTV  226 (1081)
T ss_pred             cccccCceeeecccCcchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhh-hhhcccCCCCce
Confidence            555667778888  3344445566789999999876        37788888888899998886544 578899999999


Q ss_pred             EEEEcCCCC
Q 019117          316 FVWELQSSP  324 (346)
Q Consensus       316 ~iwd~~~~~  324 (346)
                      ++||.....
T Consensus       227 kfw~y~kSt  235 (1081)
T KOG0309|consen  227 KFWDYSKST  235 (1081)
T ss_pred             eeecccccc
Confidence            999987643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=7.7e-09  Score=79.49  Aligned_cols=219  Identities=15%  Similarity=0.237  Sum_probs=136.9

Q ss_pred             ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-----eeeeeccCC------------CceEEEEEeCC-CCceE
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPL-KPSLV  144 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~-~~~~l  144 (346)
                      .+.|+++.|.  ..|. ||++|...|.|.+|.-....     ....+++|.            ..|..+.|... +...+
T Consensus        26 ad~ItaVefd--~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVEFD--ETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEEec--cccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            3455555554  7788 99999999999999854432     223344543            35778888752 33467


Q ss_pred             EEeeCCCCEEEEecCCCee-------------------EEE---ecc------------------cCCCCcceEEEEecC
Q 019117          145 VSASKDESVRLWNVQTGIC-------------------ILI---FAG------------------AGGHRNEVLSVDFHP  184 (346)
Q Consensus       145 ~s~~~d~~i~iwd~~~~~~-------------------~~~---~~~------------------~~~~~~~v~~~~~~~  184 (346)
                      +..+.|.+|++|.+.....                   +..   +..                  ...|...+.++.|..
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            7778899999998864310                   000   000                  015777888999986


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-----ccceEEEEec---CCEEEEE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-----SNYVDCNRWL---GDFILSK  256 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~---~~~l~~~  256 (346)
                       +...++++ .|=.|.+|++.-...                    ...+.-+..|     ...|++..|+   .+.+.-.
T Consensus       183 -D~et~lSa-DdLrINLWnl~i~D~--------------------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         183 -DKETLLSA-DDLRINLWNLEIIDG--------------------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             -chheeeec-cceeeeeccccccCC--------------------ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence             77766665 477899999876321                    1112222222     2446777777   5678888


Q ss_pred             eecCeEEEEcCCCCCCCC-------CCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC-ccee
Q 019117          257 SVDNEIVLWEPKMKEQSP-------GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVLI  328 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  328 (346)
                      +..|.|++-|++....-.       ......-..-+..-...|..+.|+++|  +++++-+. -+++|||+...+ ++..
T Consensus       241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--ryIlsRdy-ltvkiwDvnm~k~pikT  317 (460)
T COG5170         241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--RYILSRDY-LTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--cEEEEecc-ceEEEEecccccCCcee
Confidence            889999999998442100       000000111222234578899999999  67877665 589999998744 4444


Q ss_pred             e
Q 019117          329 A  329 (346)
Q Consensus       329 ~  329 (346)
                      .
T Consensus       318 i  318 (460)
T COG5170         318 I  318 (460)
T ss_pred             e
Confidence            4

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=2.1e-09  Score=88.88  Aligned_cols=268  Identities=14%  Similarity=0.151  Sum_probs=168.0

Q ss_pred             Ccceeeeccccccccce--eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCcc
Q 019117            7 GCEPLVGSLTPSKKREY--RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEE   84 (346)
Q Consensus         7 g~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~   84 (346)
                      +.....|++.++.....  .+..+++.|+.+|.++-|-.    +.+.++++ +++|.+||...+..+..+..-.   ..+
T Consensus       756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~----~lr~i~Sc-D~giHlWDPFigr~Laq~~dap---k~~  827 (1034)
T KOG4190|consen  756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA----DLRSIASC-DGGIHLWDPFIGRLLAQMEDAP---KEG  827 (1034)
T ss_pred             CceEEEEEeccccCccccceeeeEhhhccCcccceeeee----ccceeeec-cCcceeecccccchhHhhhcCc---ccC
Confidence            44566788887665433  36667799999999999987    55667666 5669999988887765433222   223


Q ss_pred             ceEEEEEEEcCCCCcEEEEe-ecCCeEEEEEccCcceeeee-----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           85 SFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSNEKLHKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      .+..+....+-+.. ++..| +...+|+++|.+.++-+..+     .+.+..+.+++..+ .++.++.+-..|+|.+.|.
T Consensus       828 a~~~ikcl~nv~~~-iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDa  905 (1034)
T KOG4190|consen  828 AGGNIKCLENVDRH-ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDA  905 (1034)
T ss_pred             CCceeEecccCcch-heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEec
Confidence            33334444333444 44444 78899999999888755444     34556789999999 8999999999999999999


Q ss_pred             CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE-EEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      ++|+.+..++   ........++- | ....++....|.++.+ |..-.+....                       ...
T Consensus       906 R~G~vINswr---pmecdllqlaa-p-sdq~L~~saldHslaVnWhaldgimh~-----------------------q~k  957 (1034)
T KOG4190|consen  906 RNGKVINSWR---PMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDGIMHL-----------------------QDK  957 (1034)
T ss_pred             CCCceeccCC---cccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCCeeee-----------------------ccC
Confidence            9999988877   34444444442 4 5566777777888888 7655521111                       111


Q ss_pred             ecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       238 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      ..+.+..-+.--|-.|+++...+.+.+|.-.......  .....++. ....+..++++.-|-.  .-++.|.+.|.|.+
T Consensus       958 pppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~--stitKiR~-d~f~G~lTala~LPLN--~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  958 PPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAE--STITKIRP-DEFPGTLTALAPLPLN--CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             CCCcchhhhhccCceeEEeccCcEEEEEecchhhhhh--hhhccccc-cccCCccceeeecccc--chhhccCCCCceee
Confidence            1111111111115667777777777777532211000  00001111 1123567778888876  56777888888765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=1.4e-07  Score=79.84  Aligned_cols=218  Identities=8%  Similarity=0.041  Sum_probs=127.9

Q ss_pred             EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .++.+..++ +..||..+++.+....................   .+ . .++.+..++.+..+|..+++.+........
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~  221 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---AD-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALP  221 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---EC-C-EEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence            444444455 99999988887665542110000000000111   12 3 677888889999999999987655431100


Q ss_pred             ----c------e-EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117          130 ----S------I-NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       130 ----~------v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  198 (346)
                          .      + ....+   .+..++.++.+|.+..+|..+++.+....    ... ......   .+..++.++.+|.
T Consensus       222 ~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~~-~~~p~~---~~~~vyv~~~~G~  290 (377)
T TIGR03300       222 KGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRD----ASS-YQGPAV---DDNRLYVTDADGV  290 (377)
T ss_pred             CCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeec----cCC-ccCceE---eCCEEEEECCCCe
Confidence                0      0 11112   23577778889999999999998877665    111 122222   3456777788999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      +..+|..+++......                      ........+....++.+++++.+|.|.++|..+++       
T Consensus       291 l~~~d~~tG~~~W~~~----------------------~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~-------  341 (377)
T TIGR03300       291 VVALDRRSGSELWKND----------------------ELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS-------  341 (377)
T ss_pred             EEEEECCCCcEEEccc----------------------cccCCccccCEEECCEEEEEeCCCEEEEEECCCCC-------
Confidence            9999998743211100                      00011112222237899999999999999999887       


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                        .+.+++.+...+..--...++   .|+.++.||.|+.|
T Consensus       342 --~~~~~~~~~~~~~~sp~~~~~---~l~v~~~dG~l~~~  376 (377)
T TIGR03300       342 --FVARLKTDGSGIASPPVVVGD---GLLVQTRDGDLYAF  376 (377)
T ss_pred             --EEEEEEcCCCccccCCEEECC---EEEEEeCCceEEEe
Confidence              455555444333222223333   47788889998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=9.5e-07  Score=69.71  Aligned_cols=255  Identities=13%  Similarity=0.074  Sum_probs=149.7

Q ss_pred             CCcEEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---CCeEEEEEccC--cceee--eeccCC
Q 019117           57 GNRVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN--EKLHK--SFVGHG  128 (346)
Q Consensus        57 ~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~--~~~~~~  128 (346)
                      +.+|.+|++.+.. .+..++..   ......+-+++.  |+++ .|.++..   +|.|..|.++.  |+...  ......
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v---~~~~nptyl~~~--~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g   88 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLV---AELGNPTYLAVN--PDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG   88 (346)
T ss_pred             CCceEEEEEeCcccccchhhhc---cccCCCceEEEC--CCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence            4559999998432 23322221   133445556666  8888 7777754   47788887764  44322  222223


Q ss_pred             CceEEEEEeCCCCceEEEee-CCCCEEEEecCC-Cee---EEEecccCCCCcc----------eEEEEecCCCCcEEEEE
Q 019117          129 DSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GIC---ILIFAGAGGHRNE----------VLSVDFHPSDIYRIASC  193 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~---~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~s~  193 (346)
                      .+-+-+++++ ++++++++. ..|.|.++-++. |..   +..+.    |.+.          +....+.| ++++|++.
T Consensus        89 ~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~----h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~  162 (346)
T COG2706          89 SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK----HTGSGPHERQESPHVHSANFTP-DGRYLVVP  162 (346)
T ss_pred             CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeee----cCCCCCCccccCCccceeeeCC-CCCEEEEe
Confidence            3447899999 777777665 468899999865 332   22332    4444          78889999 88777776


Q ss_pred             ec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCC
Q 019117          194 GM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKM  269 (346)
Q Consensus       194 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~  269 (346)
                      .. -..|.+|++..+........                   .+ .-...-+.|.|+  +++.....+ +++|.+|..+.
T Consensus       163 DLG~Dri~~y~~~dg~L~~~~~~-------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         163 DLGTDRIFLYDLDDGKLTPADPA-------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             ecCCceEEEEEcccCcccccccc-------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            44 34799999986433211111                   01 112234455555  777766665 89999999987


Q ss_pred             C--CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCCCCcc--e--eeeeeee-EEEEEec
Q 019117          270 K--EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPV--L--IARLICF-SLHVKYN  341 (346)
Q Consensus       270 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~--~~~~~~~-~~~~~~s  341 (346)
                      .  +.............+.+ ......|.+++||  ++|.++- ....|.+|.+....-.  .  .....+. +....|+
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~dG--rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~  299 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTG-TNWAAAIHISPDG--RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNIN  299 (346)
T ss_pred             CCceEEEeeeeccCccccCC-CCceeEEEECCCC--CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeC
Confidence            4  21111111111122222 3456778999999  5665543 3458888888664322  1  1222333 6778889


Q ss_pred             CCCCC
Q 019117          342 PQSVY  346 (346)
Q Consensus       342 pdg~~  346 (346)
                      |+|+|
T Consensus       300 ~~g~~  304 (346)
T COG2706         300 PSGRF  304 (346)
T ss_pred             CCCCE
Confidence            98875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.05  E-value=2.3e-07  Score=76.20  Aligned_cols=258  Identities=10%  Similarity=0.123  Sum_probs=156.4

Q ss_pred             CceEEEEEEeecCCCccEEEEEcC----------------CcEEEEEeccCceeeeEeeeecCCCccceE-EEEEEEcCC
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGG----------------NRVTVYQCLEGGVIAALQSYVDEDKEESFY-TVSWACNVD   96 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~----------------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~   96 (346)
                      ..|..+.|+|    .+++|.+=+.                +.+.+||..++..+..+......   ...+ .+.|+  .+
T Consensus        72 ~~V~~~~fSP----~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~~Wp~~k~s--~~  142 (561)
T COG5354          72 PDVKYLDFSP----NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YLGWPVLKFS--ID  142 (561)
T ss_pred             CCceecccCc----ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---ccccceeeee--ec
Confidence            3588899999    7889988654                23789999999887776643221   1122 45666  44


Q ss_pred             CCcEEEEeecCCeEEEEEccCccee-eeecc-CCCceEEEEEeCC-CCceEEE-----eeCCCCEEEEecCCCeeEEEec
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLH-KSFVG-HGDSINEIRTQPL-KPSLVVS-----ASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~~~~-~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      .+ ++|-. ....++|+++ ++... ..+.. ....|....|+|. +...|+.     .+.++++++|.+..+..+..-.
T Consensus       143 D~-y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~  219 (561)
T COG5354         143 DK-YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN  219 (561)
T ss_pred             ch-hhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence            55 55544 3457999997 43321 11111 1356888999993 2233343     4667899999998666554432


Q ss_pred             ccCCCCcceEEEEecCCCCcEEEEEe-----------cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRIASCG-----------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      -   ..-.=..+.|++ .+++++.--           ....+.+++++..                        .+....
T Consensus       220 l---fk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------------------~i~V~~  271 (561)
T COG5354         220 L---FKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------------------------SIPVEK  271 (561)
T ss_pred             e---EeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc------------------------ccceec
Confidence            1   112223577887 555443221           1245667766641                        111122


Q ss_pred             ecccceEEEEec--CCEEEE--EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC--
Q 019117          238 VHSNYVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR--  311 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~--  311 (346)
                      .-.+.|....|.  ++.+++  |-.+..+.++|++.+-            .+..+...=..+-|+|.+  ++++.++-  
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------------~~~~Pe~~rNT~~fsp~~--r~il~agF~n  337 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------------RFYFPEQKRNTIFFSPHE--RYILFAGFDN  337 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccce------------EEecCCcccccccccCcc--cEEEEecCCc
Confidence            457788899996  554444  3568899999998752            122233344557799998  67777664  


Q ss_pred             -CCcEEEEEcCCCCcceeeeeeee-EEEEEecCCCCC
Q 019117          312 -EGKIFVWELQSSPPVLIARLICF-SLHVKYNPQSVY  346 (346)
Q Consensus       312 -dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~spdg~~  346 (346)
                       .|.+.+||....... .-.+.+. ..-+.|||||+|
T Consensus       338 l~gni~i~~~~~rf~~-~~~~~~~n~s~~~wspd~qF  373 (561)
T COG5354         338 LQGNIEIFDPAGRFKV-AGAFNGLNTSYCDWSPDGQF  373 (561)
T ss_pred             cccceEEeccCCceEE-EEEeecCCceEeeccCCceE
Confidence             468999998775432 2233333 445789999975

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.04  E-value=4.1e-06  Score=66.39  Aligned_cols=221  Identities=15%  Similarity=0.084  Sum_probs=131.4

Q ss_pred             EEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEc-CCCCcEEEEeecCCeEEEEEc
Q 019117           38 AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDV  115 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~  115 (346)
                      ++.|.+   .++.++++--.++ |..|+..++... .+.      ... .  ..+.+. +++.  |+.+...+ +.++|+
T Consensus         4 gp~~d~---~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~------~~~-~--~G~~~~~~~g~--l~v~~~~~-~~~~d~   67 (246)
T PF08450_consen    4 GPVWDP---RDGRLYWVDIPGGRIYRVDPDTGEVE-VID------LPG-P--NGMAFDRPDGR--LYVADSGG-IAVVDP   67 (246)
T ss_dssp             EEEEET---TTTEEEEEETTTTEEEEEETTTTEEE-EEE------SSS-E--EEEEEECTTSE--EEEEETTC-EEEEET
T ss_pred             ceEEEC---CCCEEEEEEcCCCEEEEEECCCCeEE-EEe------cCC-C--ceEEEEccCCE--EEEEEcCc-eEEEec
Confidence            456765   3567777776666 888887665432 222      111 2  333333 5554  55555544 566698


Q ss_pred             cCcceeeeecc-----CCCceEEEEEeCCCCceEEEeeCC--------CCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          116 SNEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD--------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       116 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      .+++.......     .....+++++.| ++++.++....        |.|..++.. ++......    .-...+.++|
T Consensus        68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~~pNGi~~  141 (246)
T PF08450_consen   68 DTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLGFPNGIAF  141 (246)
T ss_dssp             TTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EESSEEEEEE
T ss_pred             CCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec----CcccccceEE
Confidence            88864433332     345788999999 77777766543        457777776 55444443    4566789999


Q ss_pred             cCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117          183 HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD  259 (346)
Q Consensus       183 ~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  259 (346)
                      +| +++ ++++-+..+.|..+++.........                ......+.........++++  |++.++.-..
T Consensus       142 s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  142 SP-DGKTLYVADSFNGRIWRFDLDADGGELSN----------------RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             ET-TSSEEEEEETTTTEEEEEEEETTTCCEEE----------------EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             CC-cchheeecccccceeEEEeccccccceee----------------eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence            99 665 4556677889999998752211100                01111222222346678887  7776766678


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEE
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAI  308 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~  308 (346)
                      +.|.+++.+ ++         .+..+..+...+++++|. ++.. .+++|
T Consensus       205 ~~I~~~~p~-G~---------~~~~i~~p~~~~t~~~fgg~~~~-~L~vT  243 (246)
T PF08450_consen  205 GRIVVFDPD-GK---------LLREIELPVPRPTNCAFGGPDGK-TLYVT  243 (246)
T ss_dssp             TEEEEEETT-SC---------EEEEEE-SSSSEEEEEEESTTSS-EEEEE
T ss_pred             CEEEEECCC-cc---------EEEEEcCCCCCEEEEEEECCCCC-EEEEE
Confidence            999999988 54         556666665689999995 4543 34444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.9e-09  Score=85.67  Aligned_cols=218  Identities=15%  Similarity=0.083  Sum_probs=150.2

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC--c-ceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEe
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--E-KLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWN  157 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd  157 (346)
                      |.+.|+.+...   -.+ ++.+++.||.++.|.-..  + +.+..+..|...|.+++.+- ++.++.|.+. |..++++|
T Consensus         8 hrd~i~hv~~t---ka~-fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT---KAK-FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee---hhh-eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEE
Confidence            55556554432   234 999999999999998543  1 34556678999999999998 8889999887 99999999


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCC--cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      +.+-..+..++.. ..++.+..+ .+|.+.  .+-++.-.++.|.++|-....                     ......
T Consensus        83 vEn~DminmiKL~-~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~---------------------~q~~~f  139 (558)
T KOG0882|consen   83 VENFDMINMIKLV-DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF---------------------CQDGYF  139 (558)
T ss_pred             eeccchhhhcccc-cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc---------------------Ccccee
Confidence            9877666555411 122222222 233111  233344557889999877621                     233445


Q ss_pred             EeecccceEEEEec--CCEEEEEeecCeEEEEcCCC-CCC-----CCCCccccccccccCCCcCeeEEEEeecCCcceEE
Q 019117          236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM-KEQ-----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  307 (346)
Q Consensus       236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~-~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  307 (346)
                      -..|..+|.++.+.  ++.+++....|.|.-|.... .+.     .....+..-+..+........++.|+|++  ..+.
T Consensus       140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g--~qis  217 (558)
T KOG0882|consen  140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG--AQIS  217 (558)
T ss_pred             cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--Cccc
Confidence            66789999999998  88899999999999999884 111     11111222233444445678899999999  7899


Q ss_pred             EEcCCCcEEEEEcCCCCcceee
Q 019117          308 IGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       308 ~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      +-+.|..|+++++.+++.++.+
T Consensus       218 tl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  218 TLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccCcccEEEEEEeccchhhhhh
Confidence            9999999999999999866544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.03  E-value=1.7e-06  Score=80.25  Aligned_cols=220  Identities=14%  Similarity=0.185  Sum_probs=125.1

Q ss_pred             EEEEEcCCCCcEEEEeec------CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC---CCCEEEEecC
Q 019117           89 VSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQ  159 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~  159 (346)
                      ++|-  .||+ |+|+.+.      -..++||+- .|+...+-..-.+--.+++|.| .++++++...   ...|.+|.- 
T Consensus       215 ISWR--GDG~-yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr-  288 (928)
T PF04762_consen  215 ISWR--GDGE-YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER-  288 (928)
T ss_pred             EEEC--CCCc-EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec-
Confidence            4554  8999 8888764      257999994 4765555544445556899999 8899988764   345667763 


Q ss_pred             CCeeEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC-CCccceeceE-EE
Q 019117          160 TGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF-PTKYVQFPVF-IA  236 (346)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~  236 (346)
                      +|-.-..|.... .....|..+.|++ ++..|+..-.|. |.+|-..+..-.++....+....... ..-....+.. .+
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v  366 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV  366 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence            454444443221 3467899999998 889888877554 99999988555444443332221110 0000001111 11


Q ss_pred             eecccceEEEEec-----C------C-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117          237 SVHSNYVDCNRWL-----G------D-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       237 ~~~~~~i~~~~~~-----~------~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  304 (346)
                      ....+.+....|.     +      + -.+..-...++++-.++.....    .+.....+.. ..+|..++|++++  .
T Consensus       367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP----PPMs~~~l~~-~~~v~~vaf~~~~--~  439 (928)
T PF04762_consen  367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP----PPMSSYELEL-PSPVNDVAFSPSN--S  439 (928)
T ss_pred             EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC----chHhceEEcC-CCCcEEEEEeCCC--C
Confidence            1111223222221     1      0 1111122223444444443311    1112223333 3589999999998  4


Q ss_pred             eEEEEcCCCcEEEEEcCCC
Q 019117          305 AAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~  323 (346)
                      .+++-..||.|.+|.....
T Consensus       440 ~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  440 RFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             eEEEEECCCCEEEEEecCC
Confidence            5888999999999986543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.01  E-value=2.1e-06  Score=79.68  Aligned_cols=269  Identities=14%  Similarity=0.182  Sum_probs=157.5

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc---EEEEEeccCceeeeEeeeecC---CCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDE---DKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ..+...+|.+..  +.-+++.+....   |.+-..........+..+...   .....|..+.+.  ++.. .++.+..+
T Consensus        22 ~~~~~~~~d~~s--d~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl--~d~~-~l~~~~~~   96 (928)
T PF04762_consen   22 LPITATAFDSDS--DSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYL--ADSE-SLCIALAS   96 (928)
T ss_pred             cccceEEEecCC--CeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEec--cCCC-cEEEEECC
Confidence            456777777622  233444443333   344443333323333333211   234556555554  7776 78888889


Q ss_pred             CeEEEE----EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE-------------------
Q 019117          108 GIIRVI----DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI-------------------  164 (346)
Q Consensus       108 g~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------  164 (346)
                      |.|.+.    +..+.. +...-.-...|.+++|+| ++..|+..+.++++.+.+-. ..++                   
T Consensus        97 Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVG  173 (928)
T PF04762_consen   97 GDIILVREDPDPDEDE-IEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVG  173 (928)
T ss_pred             ceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeec
Confidence            999999    544332 222222456899999999 88888888888888776422 2111                   


Q ss_pred             -----EEecccCC---------------------CCcceEEEEecCCCCcEEEEEec---C---CeEEEEEccccceeee
Q 019117          165 -----LIFAGAGG---------------------HRNEVLSVDFHPSDIYRIASCGM---D---NTVKIWSMKEFWTYVE  212 (346)
Q Consensus       165 -----~~~~~~~~---------------------~~~~v~~~~~~~~~~~~l~s~~~---d---~~i~iwd~~~~~~~~~  212 (346)
                           ..|....+                     ....-..++|-. ||.++++.+.   .   +.+++|+-...     
T Consensus       174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~ReG~-----  247 (928)
T PF04762_consen  174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSREGE-----  247 (928)
T ss_pred             cCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCCce-----
Confidence                 11111000                     112345688987 8888888764   2   47899987641     


Q ss_pred             eceeecCCCCCCCCccceeceEEE-eecccceEEEEec--CCEEEEEee---cCeEEEEcCCCCCCCCCCcccccccccc
Q 019117          213 KSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYP  286 (346)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~  286 (346)
                                          +... ..-.+--.+++|.  |+++|+...   ...|.+|.-+..+      +.+..-.+.
T Consensus       248 --------------------L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr------hgeF~l~~~  301 (928)
T PF04762_consen  248 --------------------LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR------HGEFTLRFD  301 (928)
T ss_pred             --------------------EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE------eeeEecCCC
Confidence                                1111 1111112356775  888888765   4567788766554      222223333


Q ss_pred             CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee----eeEEEEEecCCCC
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI----CFSLHVKYNPQSV  345 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~spdg~  345 (346)
                      .....|..+.|++|+  .+||..-.|. |.+|-..+..-.....+.    ..+..+.|+|.-+
T Consensus       302 ~~~~~v~~l~Wn~ds--~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  302 PEEEKVIELAWNSDS--EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             CCCceeeEEEECCCC--CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            345688999999999  6888877655 999999887644444333    1234488988644

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=9.6e-07  Score=83.39  Aligned_cols=216  Identities=14%  Similarity=0.079  Sum_probs=125.3

Q ss_pred             eEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeec-----CCC-------ccceEEEEEEEcCCCCcEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVD-----EDK-------EESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~-----~~~-------~~~v~~~~~~~~~~~~~~l  101 (346)
                      ...|++.+    ++..|.++.. ++ |+++|..++. +..+.....     ...       -.....+++.  |++..++
T Consensus       626 P~GIavd~----~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d--p~~g~Ly  698 (1057)
T PLN02919        626 PQGLAYNA----KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE--PVNEKVY  698 (1057)
T ss_pred             CcEEEEeC----CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe--cCCCeEE
Confidence            56788887    4555544443 33 9999976543 333321100     000       0122345554  7443277


Q ss_pred             EEeecCCeEEEEEccCcceeeeecc---------------CCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCeeEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVG---------------HGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICIL  165 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~  165 (346)
                      ++...++.|++||..++... .+.+               .-.....|+++| ++. ++++-+.++.|++||+.++....
T Consensus       699 Vad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        699 IAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRL  776 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            77778899999998776532 1111               012356799999 555 66677778999999998765321


Q ss_pred             Eecc----------cC--------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          166 IFAG----------AG--------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       166 ~~~~----------~~--------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                      ....          ..        ..-....++++++ ++.++++-..++.|++||..+........   .+... +.  
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG---~G~~G-~~--  849 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAG---TGKAG-FK--  849 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEec---cCCcC-CC--
Confidence            1100          00        0112346899998 78888888889999999997633211100   00000 00  


Q ss_pred             cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117          228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                       ...   .....-.....++++  |+++++-+.+++|++||+.+++
T Consensus       850 -dG~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        850 -DGK---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             -CCc---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence             000   011122344566666  7888888889999999998865

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.96  E-value=2.9e-08  Score=86.88  Aligned_cols=175  Identities=12%  Similarity=0.147  Sum_probs=128.2

Q ss_pred             CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           57 GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        57 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      .+.+..+|+.+.+..+....     ....+..++    .+++ ++.+|...|+|.+-|.++.+.+.++..|++.|.++..
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v-----~a~~v~imR----~Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNV-----SASGVTIMR----YNNR-NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             hhheeeeecccceeeeeeec-----cCCceEEEE----ecCc-EEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            34477788777665554432     222243333    4567 9999999999999999999999999999999999877


Q ss_pred             eCCCCceEEEeeCC---------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          137 QPLKPSLVVSASKD---------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       137 ~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                         .+++|++++..         .-|+|||++..+.+..+.    ......-+.|+|.=...++.++..|...+-|....
T Consensus       226 ---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~----~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  226 ---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ----FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             ---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc----cccCchhhhhcccccceEEEEecccceeecccccc
Confidence               46888888764         457999999888877775    33334668899966778888999999999985442


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~  267 (346)
                      ...                   ...+.........+..+.++  ++.++.+..+|.|.+|.-
T Consensus       299 sNP-------------------~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  299 SNP-------------------PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCC-------------------ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            110                   11233333444557777777  899999999999999983

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.96  E-value=2.7e-08  Score=87.13  Aligned_cols=180  Identities=17%  Similarity=0.234  Sum_probs=130.3

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      .++.|+....+..+|+++.+..+...-....|.-++.   ++..+.+|...|+|.+-|.++.+.++++.   +|.+.|..
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSD  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISD  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeee---ccccceee
Confidence            6777777778889999998887776655545666665   56899999999999999999999999999   89999988


Q ss_pred             EEecCCCCcEEEEEec---------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          180 VDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      +..   .|++|++||.         |..|++||+|..+.....                       ..+-++ .-+.|. 
T Consensus       223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-----------------------~~~~~P-~flrf~P  275 (1118)
T KOG1275|consen  223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-----------------------QFPYGP-QFLRFHP  275 (1118)
T ss_pred             eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCc-----------------------ccccCc-hhhhhcc
Confidence            876   4677888764         567899999995432211                       111111 222333 


Q ss_pred             --CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          250 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       250 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                        ...+++++..|...+-|..+....+     ..+.-+......+..+++|+++  ..++.|..+|.|.+|.
T Consensus       276 sl~t~~~V~S~sGq~q~vd~~~lsNP~-----~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  276 SLTTRLAVTSQSGQFQFVDTATLSNPP-----AGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccceEEEEecccceeeccccccCCCc-----cceeEEccCCCcceeEEecCCC--ceEEEecccCcEeeec
Confidence              5678888999999999954432110     0111122223348999999999  7999999999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.95  E-value=3.4e-09  Score=57.18  Aligned_cols=39  Identities=36%  Similarity=0.681  Sum_probs=36.4

Q ss_pred             cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117          118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN  157 (346)
Q Consensus       118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  157 (346)
                      ++++.++.+|.+.|.+++|+| ++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            367889999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.1e-07  Score=82.20  Aligned_cols=182  Identities=15%  Similarity=0.195  Sum_probs=128.1

Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                      ++ +|+-|..+|.|++++.. +.. .+...|+..      .. ++.++++|+.||+|.|-.+-+.+....+.    ...+
T Consensus        49 ~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rp  114 (846)
T KOG2066|consen   49 DK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRP  114 (846)
T ss_pred             cc-eeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEe----cCCc
Confidence            44 99999999999999965 343 444445444      33 78999999999999999999888887775    7789


Q ss_pred             eEEEEecCC----CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCE
Q 019117          177 VLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF  252 (346)
Q Consensus       177 v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  252 (346)
                      +.+++++|+    ..+.+++||..| +.++.-+-...                     .....+..-.+.|.++.|.|++
T Consensus       115 iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---------------------k~~v~l~~~eG~I~~i~W~g~l  172 (846)
T KOG2066|consen  115 IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---------------------KDSVVLSEGEGPIHSIKWRGNL  172 (846)
T ss_pred             ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---------------------ccceeeecCccceEEEEecCcE
Confidence            999999993    257899999988 76665433211                     1111455667889999999999


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      +|=++.+| |++||..+.+.........   ....++.-...+.|.++.   .|+.| ...+|+|..++.
T Consensus       173 IAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~---~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDED---RLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             EEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCC---eEEEe-cCCeEEEEEEec
Confidence            99998887 8999999877432222111   111122234557788776   45544 334788888873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=1e-05  Score=64.11  Aligned_cols=217  Identities=13%  Similarity=0.095  Sum_probs=134.1

Q ss_pred             EEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           89 VSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        89 ~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      ..|.  + ++. ++++-...+.|..|+..+++... +... . ...+++...+ ..|+.+.. +.+.++|+.+++.....
T Consensus         5 p~~d--~~~g~-l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    5 PVWD--PRDGR-LYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEE--TTTTE-EEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEE
T ss_pred             eEEE--CCCCE-EEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEe
Confidence            4554  6 555 77777788999999988776533 2212 2 6777888315 45555555 44666699888655444


Q ss_pred             ccc-CC-CCcceEEEEecCCCCcEEEEEecC--------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          168 AGA-GG-HRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       168 ~~~-~~-~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      ... .. .....+.+++.| ++++.++....        |.|..++...                         .+....
T Consensus        77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-------------------------~~~~~~  130 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG-------------------------KVTVVA  130 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS-------------------------EEEEEE
T ss_pred             eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC-------------------------eEEEEe
Confidence            421 12 456788999999 88877776543        4466666552                         112222


Q ss_pred             ecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117          238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                      ..-.....++|+  ++.| ++-+..+.|..+++.......  ........+....+..-.+++..+|  ++.++....+.
T Consensus       131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G--~l~va~~~~~~  206 (246)
T PF08450_consen  131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDG--NLWVADWGGGR  206 (246)
T ss_dssp             EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTE
T ss_pred             cCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCC--CEEEEEcCCCE
Confidence            234445778888  6655 466778889999986433100  0011222223223347789999988  67777667889


Q ss_pred             EEEEEcCCCCcceeeeee-eeEEEEEec-CCC
Q 019117          315 IFVWELQSSPPVLIARLI-CFSLHVKYN-PQS  344 (346)
Q Consensus       315 i~iwd~~~~~~~~~~~~~-~~~~~~~~s-pdg  344 (346)
                      |.+++.. |+.+..+.++ ..+++++|. |+.
T Consensus       207 I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  207 IVVFDPD-GKLLREIELPVPRPTNCAFGGPDG  237 (246)
T ss_dssp             EEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred             EEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence            9999987 8877777777 568899994 553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.1e-07  Score=75.69  Aligned_cols=259  Identities=12%  Similarity=0.191  Sum_probs=142.0

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ..++..+.+.+|...|.+++|||.+   ..++..++-+. |.|.|+.+...+..+..      ...+++++|.  .+..+
T Consensus       181 ~~fkssq~lp~~g~~IrdlafSp~~---~GLl~~asl~nkiki~dlet~~~vssy~a------~~~~wSC~wD--lde~h  249 (463)
T KOG1645|consen  181 HDFKSSQILPGEGSFIRDLAFSPFN---EGLLGLASLGNKIKIMDLETSCVVSSYIA------YNQIWSCCWD--LDERH  249 (463)
T ss_pred             CCcchhhcccccchhhhhhccCccc---cceeeeeccCceEEEEecccceeeeheec------cCCceeeeec--cCCcc
Confidence            3455556678899999999999932   23677777777 99999998877666653      3678889998  55566


Q ss_pred             EEEEeecCCeEEEEEccCcc-eeeeecc--CCCceEEEEEeCC-----CCceEEEeeCCCCEEEEecCCC----eeEEEe
Q 019117          100 FLVAGGINGIIRVIDVSNEK-LHKSFVG--HGDSINEIRTQPL-----KPSLVVSASKDESVRLWNVQTG----ICILIF  167 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~----~~~~~~  167 (346)
                      +|..|..+|.|.|||++..+ .+..+.+  ...+|..++.-+-     .+.+++..+.+  +..|++...    .++..+
T Consensus       250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel  327 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL  327 (463)
T ss_pred             eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence            99999999999999997654 2222222  2234444443321     23444444433  556665422    122222


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCC------eEEEE-EccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                          +..+.+.++..++.....|++.-.+.      .|... |-+.+-.-...      .+..+     +  ......+.
T Consensus       328 ----e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~------r~~~~-----G--s~~~kl~t  390 (463)
T KOG1645|consen  328 ----EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK------RRTYF-----G--SKQTKLST  390 (463)
T ss_pred             ----CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeee------ccccc-----C--Cccccccc
Confidence                35667778888773344455443321      11110 00000000000      00000     0  00000111


Q ss_pred             c-ceEEEEecCCE-EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          241 N-YVDCNRWLGDF-ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       241 ~-~i~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      . .+.... ..++ +..++..+.+.+||+.+.+         .++++... .+|..++...-....+|+.-. |..++||
T Consensus       391 ~~ai~~~~-~nn~iv~~gd~tn~lil~D~~s~e---------vvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy  458 (463)
T KOG1645|consen  391 TQAIRAVE-DNNYIVVVGDSTNELILQDPHSFE---------VVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY  458 (463)
T ss_pred             ccceeccc-cccEEEEecCCcceeEEeccchhh---------eeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence            1 111110 0233 4445567889999999887         56666554 467776655543335666655 4578887


Q ss_pred             EcC
Q 019117          319 ELQ  321 (346)
Q Consensus       319 d~~  321 (346)
                      ..+
T Consensus       459 k~e  461 (463)
T KOG1645|consen  459 KNE  461 (463)
T ss_pred             ecC
Confidence            654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.89  E-value=1.1e-09  Score=92.02  Aligned_cols=203  Identities=16%  Similarity=0.182  Sum_probs=134.9

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEee----CCCCEEEEe
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRLWN  157 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd  157 (346)
                      ..+.|+++..+.+.. +++.|..+|.|.+-.++...-  ....++|....++++|++.+.+.||+|-    .|..+.|||
T Consensus        57 qy~kcva~~y~~d~c-IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRC-ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchh-hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            445667776665544 899999999999988765432  3445678889999999997778888874    366899999


Q ss_pred             cCCC--eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          158 VQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       158 ~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      +.++  .+.....-..+......+++|.. +..++++|...+.+.++|++...                        ...
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~------------------------~~~  190 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL------------------------DSV  190 (783)
T ss_pred             cccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh------------------------hhh
Confidence            9876  22222111112334556888985 88999999998999999999511                        111


Q ss_pred             EeecccceEEEEe---cCCEEEEEeecCeEEEEc-CCCCCCCCCCccccccccccCCC----cCeeEEEEeecCCcceEE
Q 019117          236 ASVHSNYVDCNRW---LGDFILSKSVDNEIVLWE-PKMKEQSPGEGTADILQKYPVPE----CDIWFIKFSCDFHYNAAA  307 (346)
Q Consensus       236 ~~~~~~~i~~~~~---~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~l~  307 (346)
                      ....+..+..+..   +++++++-. ||.|.+|| .+.-+.        ++..+....    ..+..++|+|-..+ .++
T Consensus       191 ~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~i~~~~N~~~~~l~~~aycPtrtg-lla  260 (783)
T KOG1008|consen  191 SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQIILRNENKKPKQLFALAYCPTRTG-LLA  260 (783)
T ss_pred             hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--------HHHHHhhCCCCcccceeeEEeccCCcc-hhh
Confidence            1122223333333   378888776 99999999 433321        333322222    25889999998753 566


Q ss_pred             EEc-CCCcEEEEEcCC
Q 019117          308 IGN-REGKIFVWELQS  322 (346)
Q Consensus       308 ~~~-~dg~i~iwd~~~  322 (346)
                      +.+ ..+.|+++|+..
T Consensus       261 ~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  261 VLSRDSITIRLYDICV  276 (783)
T ss_pred             hhccCcceEEEecccc
Confidence            655 456899998854

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.88  E-value=6.5e-06  Score=65.05  Aligned_cols=235  Identities=16%  Similarity=0.188  Sum_probs=143.8

Q ss_pred             EEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-----cCCeE
Q 019117           38 AVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-----INGII  110 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-----~dg~i  110 (346)
                      .++.+|.   ....+|.+-.-+  ..+||..+++....+..-    .+...+.-. .|++||+ +|++.-     ..|.|
T Consensus         9 ~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----~gRHFyGHg-~fs~dG~-~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    9 GVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----PGRHFYGHG-VFSPDGR-LLYTTENDYETGRGVI   79 (305)
T ss_pred             ceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----CCCEEecCE-EEcCCCC-EEEEeccccCCCcEEE
Confidence            5677773   356777777766  999999999887766531    222222222 3669999 777763     35899


Q ss_pred             EEEEcc-CcceeeeeccCCCceEEEEEeCCCCceEEEeeC------------------CCCEEEEecCCCeeEEEeccc-
Q 019117          111 RVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK------------------DESVRLWNVQTGICILIFAGA-  170 (346)
Q Consensus       111 ~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------------d~~i~iwd~~~~~~~~~~~~~-  170 (346)
                      -|||.. +.+.+..+..|.-.-..+.+.| ++..|+.+..                  +-.+...|..+|+.+...... 
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            999998 6677888888877788899999 6655555421                  223556677778877764421 


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCC-------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDN-------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ..|.-.|+.+++.+ ++..++..-..|       -|-+++.....                  .....+......-..++
T Consensus       159 ~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~------------------~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  159 DLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGAL------------------RLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             cccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcc------------------eeccCChHHHHhhCCce
Confidence            14677899999997 666555543332       12222222200                  00000111112234678


Q ss_pred             EEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          244 DCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       244 ~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      -+|+++  +..+ +|+-..+.+.+||..+++         .+......  .+..++-.+++   ++++.+. |.+.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~---------~~~~~~l~--D~cGva~~~~~---f~~ssG~-G~~~  280 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGR---------LLGSVPLP--DACGVAPTDDG---FLVSSGQ-GQLI  280 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCC---------EeeccccC--ceeeeeecCCc---eEEeCCC-ccEE
Confidence            899997  4444 666678999999999887         34333322  44555555554   5555544 5443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=1.6e-08  Score=54.43  Aligned_cols=39  Identities=33%  Similarity=0.714  Sum_probs=35.6

Q ss_pred             CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117          161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  203 (346)
                      ++++..+.   +|.+.|++++|+| ++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            35677888   8999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=2.2e-06  Score=72.85  Aligned_cols=193  Identities=9%  Similarity=-0.037  Sum_probs=108.1

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeC---CCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      ..|.+-|.+.... +.+... +....-.|+| +++ .++..+.   +..|.++|+.+++......    ..+......|+
T Consensus       169 ~~l~~~d~dg~~~-~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~S  241 (419)
T PRK04043        169 SNIVLADYTLTYQ-KVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVS  241 (419)
T ss_pred             ceEEEECCCCCce-eEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEEC
Confidence            4566666544433 323323 3778999999 665 3554333   3568999998887655443    44556677899


Q ss_pred             CCCCcEEEEEecCC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117          184 PSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  258 (346)
Q Consensus       184 ~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  258 (346)
                      |++..++++.+.++  .|.++|+....                        ...+..+........|+  |+.|+-.+. 
T Consensus       242 PDG~~la~~~~~~g~~~Iy~~dl~~g~------------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr  297 (419)
T PRK04043        242 KDGSKLLLTMAPKGQPDIYLYDTNTKT------------------------LTQITNYPGIDVNGNFVEDDKRIVFVSDR  297 (419)
T ss_pred             CCCCEEEEEEccCCCcEEEEEECCCCc------------------------EEEcccCCCccCccEECCCCCEEEEEECC
Confidence            93334555555444  56666765521                        11222222212233565  665555543 


Q ss_pred             cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC---------CcEEEEEcCCCCcce
Q 019117          259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---------GKIFVWELQSSPPVL  327 (346)
Q Consensus       259 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~  327 (346)
                      .+  .|.+.|+.+++...       + .+.+.    ....|||||+  .|+..+..         ..|.+.|+.+++...
T Consensus       298 ~g~~~Iy~~dl~~g~~~r-------l-t~~g~----~~~~~SPDG~--~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~  363 (419)
T PRK04043        298 LGYPNIFMKKLNSGSVEQ-------V-VFHGK----NNSSVSTYKN--YIVYSSRETNNEFGKNTFNLYLISTNSDYIRR  363 (419)
T ss_pred             CCCceEEEEECCCCCeEe-------C-ccCCC----cCceECCCCC--EEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence            33  57777887665211       1 11111    1238999995  44444332         368888998887543


Q ss_pred             eeeeeeeEEEEEecCCCCC
Q 019117          328 IARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       328 ~~~~~~~~~~~~~spdg~~  346 (346)
                      ... .+......|+|||++
T Consensus       364 LT~-~~~~~~p~~SPDG~~  381 (419)
T PRK04043        364 LTA-NGVNQFPRFSSDGGS  381 (419)
T ss_pred             CCC-CCCcCCeEECCCCCE
Confidence            332 223345889999973

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4.2e-07  Score=73.59  Aligned_cols=274  Identities=11%  Similarity=0.026  Sum_probs=169.7

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-CC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NG  108 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg  108 (346)
                      -|.+.|+.+.-..     .+++.+++-|+ ++.|--..-..+..+..+.  .|-..+.+++.+  .+|. ++.+.+. |.
T Consensus         7 mhrd~i~hv~~tk-----a~fiiqASlDGh~KFWkKs~isGvEfVKhFr--aHL~~I~sl~~S--~dg~-L~~Sv~d~Dh   76 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-----AKFIIQASLDGHKKFWKKSRISGVEFVKHFR--AHLGVILSLAVS--YDGW-LFRSVEDPDH   76 (558)
T ss_pred             cccceeeeEeeeh-----hheEEeeecchhhhhcCCCCccceeehhhhH--HHHHHHHhhhcc--ccce-eEeeccCccc
Confidence            4788888877664     58999999999 9999844324444443332  255666666665  7788 8888777 99


Q ss_pred             eEEEEEccCcceeeeec--cCCCceEEEEEeCCCC--ceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEec
Q 019117          109 IIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      .++++|+.+-..+.-++  --.+.+. +..++.+.  ..-++.-.++.+.++|-.... ....++.  -|..+|..+.+.
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--lH~sPV~~i~y~  153 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--LHFSPVKKIRYN  153 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc--cccCceEEEEee
Confidence            99999987765442222  1223222 22333111  223334567899999976543 3333332  589999999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      + .+..+++....|.|.-|.....-..+.....+.       . .....+..+.-......++.|+  +..+.+-+.|..
T Consensus       154 q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~-------~-K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk  224 (558)
T KOG0882|consen  154 Q-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE-------L-KHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK  224 (558)
T ss_pred             c-cccceeeccccceeEeecCCCcccCcccccccc-------c-cccchhhcccccccCccceEEccccCcccccCcccE
Confidence            8 888899999999999998874110000000000       0 0011122333344556777777  889999999999


Q ss_pred             EEEEcCCCCCCCCCCccc-----------------c------ccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          262 IVLWEPKMKEQSPGEGTA-----------------D------ILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~-----------------~------~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      |++++.++++........                 +      ..+.+..+. ..-+.+.|...+  ++|+.++.=| |++
T Consensus       225 VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~--~flly~t~~g-ikv  301 (558)
T KOG0882|consen  225 VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG--NFLLYGTILG-IKV  301 (558)
T ss_pred             EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC--CEEEeeccee-EEE
Confidence            999999998753221100                 0      001111121 233456677777  7888888766 899


Q ss_pred             EEcCCCCcceee
Q 019117          318 WELQSSPPVLIA  329 (346)
Q Consensus       318 wd~~~~~~~~~~  329 (346)
                      .++.+++.+.++
T Consensus       302 in~~tn~v~ri~  313 (558)
T KOG0882|consen  302 INLDTNTVVRIL  313 (558)
T ss_pred             EEeecCeEEEEe
Confidence            999998765544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.78  E-value=5.3e-06  Score=70.65  Aligned_cols=231  Identities=10%  Similarity=0.023  Sum_probs=133.2

Q ss_pred             EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .+..++.++ +..+|..+|+.+......      ..+.+--..  .++  .++.+..++.+..+|.++|+.+..+.....
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~ssP~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  191 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTKVA------GEALSRPVV--SDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVP  191 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCcccccCC------CceecCCEE--ECC--EEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence            444455555 999999888877665421      111111111  133  567777899999999999998877753211


Q ss_pred             ce-----EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-c---ceEEEEecC-CCCcEEEEEecCCeE
Q 019117          130 SI-----NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-N---EVLSVDFHP-SDIYRIASCGMDNTV  199 (346)
Q Consensus       130 ~v-----~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~---~v~~~~~~~-~~~~~l~s~~~d~~i  199 (346)
                      ..     ..-...   +..++.++.+|.+..+|..+|+.+.......... .   ....+..+| -.+..++.++.+|.+
T Consensus       192 ~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        192 SLTLRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             cccccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence            10     011111   2356667788999999999998877654210000 0   011111112 013356667788999


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  279 (346)
                      ..+|+.+++......                       .  .....+...++.++.++.+|.+..+|..+++....... 
T Consensus       269 ~ald~~tG~~~W~~~-----------------------~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-  322 (394)
T PRK11138        269 VALDLRSGQIVWKRE-----------------------Y--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD-  322 (394)
T ss_pred             EEEECCCCCEEEeec-----------------------C--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc-
Confidence            999998854322111                       0  00111233477888888999999999988763211100 


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                           ..  .....+... .+   ..|+.++.||.|+..|..+|+.+...++
T Consensus       323 -----~~--~~~~~sp~v-~~---g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        323 -----LL--HRLLTAPVL-YN---GYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             -----cC--CCcccCCEE-EC---CEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence                 00  001111112 13   3678889999999999999987665554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=1e-05  Score=68.82  Aligned_cols=190  Identities=9%  Similarity=-0.017  Sum_probs=103.1

Q ss_pred             EEEEcCCCCcEEEEeec---CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCC--CCEEEEecCCCee
Q 019117           90 SWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD--ESVRLWNVQTGIC  163 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d--~~i~iwd~~~~~~  163 (346)
                      .-.++|+|+..++..+.   +..|.++|+.+++...... ..+......|+| ++. ++++.+.+  ..|.++|+..++.
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~  269 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTL  269 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcE
Confidence            33445999732443332   3578999998887554433 455566788999 555 44455444  4677778877764


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      . .+.   .+........|+|++..++++....+  .|.+.|+.....                        ..+.....
T Consensus       270 ~-~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------------------------~rlt~~g~  321 (419)
T PRK04043        270 T-QIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------------------------EQVVFHGK  321 (419)
T ss_pred             E-Ecc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe------------------------EeCccCCC
Confidence            3 343   23333345679994334555554444  466666655221                        00111111


Q ss_pred             ceEEEEec--CCEEEEEeec---------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117          242 YVDCNRWL--GDFILSKSVD---------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      .  ...|+  |++++..+..         ..|.+.|+.++..          ..+... .......|+|||+  .++..+
T Consensus       322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----------~~LT~~-~~~~~p~~SPDG~--~I~f~~  386 (419)
T PRK04043        322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----------RRLTAN-GVNQFPRFSSDGG--SIMFIK  386 (419)
T ss_pred             c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----------EECCCC-CCcCCeEECCCCC--EEEEEE
Confidence            1  12454  7766665543         3678888877652          111111 1223478999995  443333


Q ss_pred             -CCC--cEEEEEcCCCC
Q 019117          311 -REG--KIFVWELQSSP  324 (346)
Q Consensus       311 -~dg--~i~iwd~~~~~  324 (346)
                       ..+  .+.+.++....
T Consensus       387 ~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        387 YLGNQSALGIIRLNYNK  403 (419)
T ss_pred             ccCCcEEEEEEecCCCe
Confidence             222  46677776544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=9.1e-06  Score=64.12  Aligned_cols=183  Identities=13%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee-ccC
Q 019117           49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGH  127 (346)
Q Consensus        49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~  127 (346)
                      +.+++....+.+..||..+|+.+..... ... ....   . .   ..+. .++.+..++.+..+|..+|+.+... ...
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-~~~~---~-~---~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~  106 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-ISGA---P-V---VDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTS  106 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-GGSG---E-E---EETT-EEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-ccce---e-e---eccc-ccccccceeeeEecccCCcceeeeecccc
Confidence            3444444455599999999988776653 111 1111   1 1   2233 5667777889999999999988874 322


Q ss_pred             C---CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cc------e-EEEEecCCCCcEEEEEecC
Q 019117          128 G---DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NE------V-LSVDFHPSDIYRIASCGMD  196 (346)
Q Consensus       128 ~---~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~------v-~~~~~~~~~~~~l~s~~~d  196 (346)
                      .   .......... .+..++.+..++.|..+|+++|+.+.......... ..      + ..+.+.  ++ .++.++.+
T Consensus       107 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~  182 (238)
T PF13360_consen  107 SPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGD  182 (238)
T ss_dssp             SCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCT
T ss_pred             ccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCC
Confidence            1   1112222222 35678888889999999999999988887421111 11      1 233333  34 66666667


Q ss_pred             Ce-EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE-EEecCCEEEEEeecCeEEEEcCCCCC
Q 019117          197 NT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       197 ~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      +. +.+ |+.+.+.                       +....  ...+.. ....++.++.++.++.|..||+++++
T Consensus       183 g~~~~~-d~~tg~~-----------------------~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  183 GRVVAV-DLATGEK-----------------------LWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             SSEEEE-ETTTTEE-----------------------EEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CeEEEE-ECCCCCE-----------------------EEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            75 555 8888431                       21111  122222 33347888888899999999999986

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=1.2e-06  Score=76.16  Aligned_cols=187  Identities=12%  Similarity=0.110  Sum_probs=123.1

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      .+.++|++++-      ++|+-|.-+| |++++.... ....+.      |...        +.+|. ++++|+.||+|.
T Consensus        39 ~D~is~~av~~------~~~~~GtH~g~v~~~~~~~~-~~~~~~------~s~~--------~~~Ge-y~asCS~DGkv~   96 (846)
T KOG2066|consen   39 NDAISCCAVHD------KFFALGTHRGAVYLTTCQGN-PKTNFD------HSSS--------ILEGE-YVASCSDDGKVV   96 (846)
T ss_pred             hhHHHHHHhhc------ceeeeccccceEEEEecCCc-cccccc------cccc--------ccCCc-eEEEecCCCcEE
Confidence            46788899874      8999999888 999985433 222221      1111        46788 999999999999


Q ss_pred             EEEccCcceeeeeccCCCceEEEEEeCC----CCceEEEeeCCCCEEEEecCC---CeeEEEecccCCCCcceEEEEecC
Q 019117          112 VIDVSNEKLHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQT---GICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      |-.+.+.+...++. -..++.+|+++|+    ....+++|+.-| +.++.-+-   ...+ .+.   .-.++|.++.|. 
T Consensus        97 I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~---~~eG~I~~i~W~-  169 (846)
T KOG2066|consen   97 IGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS---EGEGPIHSIKWR-  169 (846)
T ss_pred             EeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee---cCccceEEEEec-
Confidence            99998888766665 4578999999993    256899999888 77765331   1111 232   457899999995 


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVL  264 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~i  264 (346)
                        +++++-++.+| |++||+...+........                . ........-..+.|..+..++-|+..+|+|
T Consensus       170 --g~lIAWand~G-v~vyd~~~~~~l~~i~~p----------------~-~~~R~e~fpphl~W~~~~~LVIGW~d~v~i  229 (846)
T KOG2066|consen  170 --GNLIAWANDDG-VKVYDTPTRQRLTNIPPP----------------S-QSVRPELFPPHLHWQDEDRLVIGWGDSVKI  229 (846)
T ss_pred             --CcEEEEecCCC-cEEEeccccceeeccCCC----------------C-CCCCcccCCCceEecCCCeEEEecCCeEEE
Confidence              57777776554 899999884322111100                0 000001112345666444445567678999


Q ss_pred             EcCC
Q 019117          265 WEPK  268 (346)
Q Consensus       265 wd~~  268 (346)
                      ..++
T Consensus       230 ~~I~  233 (846)
T KOG2066|consen  230 CSIK  233 (846)
T ss_pred             EEEe
Confidence            9988

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.6e-07  Score=71.47  Aligned_cols=96  Identities=15%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      +++.+..+-+....+..|...|.+++|+|.+..++..++.+.+|+|.|+++...+..+.   .+ ..+.+++|.-++..+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcce
Confidence            66666666666667788899999999999666689999999999999999999888887   34 899999999877889


Q ss_pred             EEEEecCCeEEEEEccccce
Q 019117          190 IASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~  209 (346)
                      ++.|...|.|.+||++....
T Consensus       251 IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eEEeccCceEEEEEccCCCc
Confidence            99999999999999998544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=1.3e-08  Score=88.93  Aligned_cols=165  Identities=14%  Similarity=0.179  Sum_probs=114.9

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ..|+....|..|...-+|++|+-    ..+.|+.|+-.| |++|+..+|........     |+..++-+.  ++.+|..
T Consensus      1089 SRFr~w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-----H~SavT~ve--Ps~dgs~ 1157 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVNC-----HQSAVTLVE--PSVDGST 1157 (1516)
T ss_pred             hhcccchhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCccccccccc-----ccccccccc--ccCCcce
Confidence            46777788899999999999997    568999998888 99999999988777765     666665554  4578873


Q ss_pred             EEEEeecCC-eEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe-cccCCCCcc
Q 019117          100 FLVAGGING-IIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHRNE  176 (346)
Q Consensus       100 ~l~~~~~dg-~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~  176 (346)
                      .|.+++... -..+|++.. +....++.    .-.++.|+. ....-+.|..-....+||++++.++.++ ....+....
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred             eeeeccccCchHHHhccccccCcccccc----ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence            444444443 577999854 33444443    346888987 4444444555556889999999887763 322223334


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      =++..|+| ...+++   .||  .+||++..
T Consensus      1233 ~n~a~FsP-~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSP-CDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             ccccccCC-CcceEe---eCc--eeeeeccH
Confidence            47888999 666665   344  57999983

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.69  E-value=1.7e-05  Score=60.98  Aligned_cols=166  Identities=13%  Similarity=0.224  Sum_probs=103.7

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCCC---CcEEEEeecCCe
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDG---IPFLVAGGINGI  109 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~---~~~l~~~~~dg~  109 (346)
                      =+.++|||    |+.+||.+...+ |++||+..... ..+..-.  ...-...|..+.|......   ...|++-..+|.
T Consensus        46 WRkl~WSp----D~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~  120 (282)
T PF15492_consen   46 WRKLAWSP----DCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ  120 (282)
T ss_pred             heEEEECC----CCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence            45799999    889999998888 99999765333 2332211  0112345555555422111   114555566888


Q ss_pred             EEEEEccCc-----ceeeee--c-cCCCceEEEEEeCCCCceEEEeeCC-C----------CEEEEecCCCeeEEE----
Q 019117          110 IRVIDVSNE-----KLHKSF--V-GHGDSINEIRTQPLKPSLVVSASKD-E----------SVRLWNVQTGICILI----  166 (346)
Q Consensus       110 i~iwd~~~~-----~~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~~~d-~----------~i~iwd~~~~~~~~~----  166 (346)
                      ++-|-+..+     +....+  . .+...|.++.++| ..++|+.|+.. .          -+..|.+-++.+-..    
T Consensus       121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~  199 (282)
T PF15492_consen  121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS  199 (282)
T ss_pred             eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence            887776332     222232  2 2467899999999 77777766531 1          256676643321110    


Q ss_pred             ----------------------ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117          167 ----------------------FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  208 (346)
Q Consensus       167 ----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  208 (346)
                                            +.........|..|..+| ++.+|++...+|.|.+|++.+.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcch
Confidence                                  000012456789999999 99999999999999999998844

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.69  E-value=8.5e-06  Score=63.38  Aligned_cols=207  Identities=8%  Similarity=0.021  Sum_probs=112.4

Q ss_pred             eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       122 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                      +.+.+-...+..++|+|+++.++++....+.|...+. +|+.++.+.-.  -.+..-.+++.. ++.++++.-.++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~--g~~D~EgI~y~g-~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD--GFGDYEGITYLG-NGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S--S-SSEEEEEE-S-TTEEEEEETTTTEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC--CCCCceeEEEEC-CCEEEEEEcCCCcEEE
Confidence            3455666679999999966678888888888988886 48888887631  235677888875 6776776666899999


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC--CCCCCc
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE--QSPGEG  277 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~  277 (346)
                      +++...........            .....+.....+...+-.++|+  ++.|+.+-...-..+|.++...  ......
T Consensus        91 ~~~~~~~~~~~~~~------------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   91 FTIDDDTTSLDRAD------------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EEE----TT--EEE------------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEEeccccccchhh------------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence            99855211110000            0000111112355668899998  6677777777777777766411  000000


Q ss_pred             cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee----------eEEEEEecCCCCC
Q 019117          278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC----------FSLHVKYNPQSVY  346 (346)
Q Consensus       278 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~spdg~~  346 (346)
                      ....+.........+.+++++|... .+++-......|..+| .+|+++....+..          ....|+|.|+|++
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred             cccccccccceeccccceEEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence            0001111122345688999999765 5777788888999999 6677776666654          2567999999863

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.69  E-value=1.2e-05  Score=68.49  Aligned_cols=223  Identities=11%  Similarity=0.064  Sum_probs=125.0

Q ss_pred             EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .++.+..++ +..+|..+|+.+....................   .++  .++.++.+|.+..+|..+++.+........
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~  236 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQP  236 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECC--EEEEEcCCCEEEEEEccCChhhheeccccC
Confidence            344444444 99999988887766543110000000000111   123  466677789999999999987665431110


Q ss_pred             -------ceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          130 -------SINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       130 -------~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                             ....+.-+|. .+..++.++.+|.+..+|..+++.+.....    .. ...+..   .+..++.++.+|.+..
T Consensus       237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~-~~~~~~---~~~~vy~~~~~g~l~a  308 (394)
T PRK11138        237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GS-VNDFAV---DGGRIYLVDQNDRVYA  308 (394)
T ss_pred             CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC-ccCcEE---ECCEEEEEcCCCeEEE
Confidence                   0011111110 234666777889999999999988776541    11 112232   3445777778999999


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      +|..+++.......                    .  ......+....+.+++.++.||.+.+.|..+++         .
T Consensus       309 ld~~tG~~~W~~~~--------------------~--~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~---------~  357 (394)
T PRK11138        309 LDTRGGVELWSQSD--------------------L--LHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR---------F  357 (394)
T ss_pred             EECCCCcEEEcccc--------------------c--CCCcccCCEEECCEEEEEeCCCEEEEEECCCCC---------E
Confidence            99987432111100                    0  000111122237788999999999999999887         3


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      +.+.......+.+--.-.+   ..|+.++.||.|+.++.
T Consensus       358 ~~~~~~~~~~~~s~P~~~~---~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        358 VAQQKVDSSGFLSEPVVAD---DKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEcCCCcceeCCEEEC---CEEEEEeCCceEEEEeC
Confidence            4333322222222111123   36888899999988764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.2e-05  Score=70.79  Aligned_cols=202  Identities=13%  Similarity=0.151  Sum_probs=130.3

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCc-eEEEEEeCCCCceEEEeeCCCC-----EEEEecCCC------e
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDES-----VRLWNVQTG------I  162 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~------~  162 (346)
                      +.+. .++.|+.+|.|.+.+ +.-+.++.++.+... |..+.... +.++|++.+.|+.     |++|+++..      .
T Consensus        33 s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   33 SSTG-SVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             CCCc-eEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            6666 899999999988887 344555777777766 55554444 5578888777654     899998632      2


Q ss_pred             eE---EEeccc-CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          163 CI---LIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       163 ~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      ++   +.+... .....++.+++.+. +-..+++|-.+|.|..+.=+-.+.                   ..........
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD-------------------rgsr~~~~~~  169 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD-------------------RGSRQDYSHR  169 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc-------------------cccceeeecc
Confidence            33   222211 12356788999996 788899999999998875332111                   1111222233


Q ss_pred             cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      -..+|+.+.+.  +..++-+..-..|.+|.+....        ..+..+..+..++.|..|++...  .+++++. ..+.
T Consensus       170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~--qfIca~~-e~l~  238 (933)
T KOG2114|consen  170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTY--QFICAGS-EFLY  238 (933)
T ss_pred             CCCCceeeEEecCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCc--cEEEecC-ceEE
Confidence            45679999997  5542333344579999988332        13445677788889999988763  2444443 4699


Q ss_pred             EEEcCCCCcceeee
Q 019117          317 VWELQSSPPVLIAR  330 (346)
Q Consensus       317 iwd~~~~~~~~~~~  330 (346)
                      +|+.....+...+.
T Consensus       239 fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  239 FYDSDGRGPCFAFE  252 (933)
T ss_pred             EEcCCCcceeeeec
Confidence            99988766555444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.66  E-value=2e-05  Score=66.73  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             EEEEccCccee----eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          111 RVIDVSNEKLH----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       111 ~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      .+|+....+..    ..+ .....|.+++++| +...|+.|+.||+|.+||...+..... +    ..-.++.++|+| +
T Consensus       239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp-~  310 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHP-D  310 (545)
T ss_pred             EEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcC-C
Confidence            45666544322    222 3677899999999 889999999999999999876643322 2    556788999999 9


Q ss_pred             CcEEEEEecCCeEEEEEccc
Q 019117          187 IYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~  206 (346)
                      +..+++|+..|.+.+||+.-
T Consensus       311 gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  311 GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CcEEEEEcCCceEEEEEeec
Confidence            99999999999999999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.62  E-value=6e-05  Score=69.06  Aligned_cols=206  Identities=13%  Similarity=0.194  Sum_probs=125.7

Q ss_pred             ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec----
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV----  158 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~----  158 (346)
                      ...|.++.|.  .+.. .++.+...|.|.+-|..+..... .-.-...|.+++|+| ++..++..+..+++.+-+-    
T Consensus        68 d~~i~s~~fl--~d~~-~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFL--ADTN-SICVITALGDIILVDPETLELEI-VGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             CcceEEEEEe--cccc-eEEEEecCCcEEEEcccccceee-eeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccc
Confidence            3466555554  6666 78888889999999877655322 222456799999999 8888888887777765432    


Q ss_pred             CCCeeE-------------------EEecccCC---------C---------CcceEEEEecCCCCcEEEEE-----ecC
Q 019117          159 QTGICI-------------------LIFAGAGG---------H---------RNEVLSVDFHPSDIYRIASC-----GMD  196 (346)
Q Consensus       159 ~~~~~~-------------------~~~~~~~~---------~---------~~~v~~~~~~~~~~~~l~s~-----~~d  196 (346)
                      -..+++                   ..|+...+         +         .+.=+.+.|-- +|.++++.     ...
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGT  221 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCc
Confidence            111111                   11210000         0         11123588885 88888773     223


Q ss_pred             CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe---ecCeEEEEcCCCCC
Q 019117          197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKMKE  271 (346)
Q Consensus       197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~---~d~~i~iwd~~~~~  271 (346)
                      +.|++||-.......                        -......-.+++|.  |..+++-.   .|+.|.+|.-+..+
T Consensus       222 RkirV~drEg~Lns~------------------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  222 RKIRVYDREGALNST------------------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             eeEEEecccchhhcc------------------------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            789999987311000                        00111122355665  66776653   46689999877655


Q ss_pred             CCCCCccccccccccCCCcCeeEEEEeecCCcceEEE---EcCCCcEEEEEcCCCCcc
Q 019117          272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPV  326 (346)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~---~~~dg~i~iwd~~~~~~~  326 (346)
                            +.+..-.++.....+..++|+.++  .+|++   ......|++|-+.+..-.
T Consensus       278 ------hg~f~l~~p~de~~ve~L~Wns~s--diLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  278 ------HGEFVLPFPLDEKEVEELAWNSNS--DILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             ------ccccccCCcccccchheeeecCCC--CceeeeecccccceEEEEEecCeEEE
Confidence                  333344444455568999999999  67877   555556999999876543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.59  E-value=5.8e-05  Score=64.25  Aligned_cols=232  Identities=15%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ..-....+.++|    +|+.+++++++.-.||..........-            .+..+.+.+.+  .+|+-..++.|.
T Consensus        31 ~~~~p~~ls~np----ngr~v~V~g~geY~iyt~~~~r~k~~G------------~g~~~vw~~~n--~yAv~~~~~~I~   92 (443)
T PF04053_consen   31 CEIYPQSLSHNP----NGRFVLVCGDGEYEIYTALAWRNKAFG------------SGLSFVWSSRN--RYAVLESSSTIK   92 (443)
T ss_dssp             -SS--SEEEE-T----TSSEEEEEETTEEEEEETTTTEEEEEE------------E-SEEEE-TSS--EEEEE-TTS-EE
T ss_pred             CCcCCeeEEECC----CCCEEEEEcCCEEEEEEccCCcccccC------------ceeEEEEecCc--cEEEEECCCeEE
Confidence            344577899999    789999988887777773222221111            11334444655  467777688999


Q ss_pred             EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      |+.--+.+....++. ...+..+-    .+.+|...+.+ .|.+||+.+++.+..+.    .. +|..+.|++ ++.+++
T Consensus        93 I~kn~~~~~~k~i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~----v~-~vk~V~Ws~-~g~~va  160 (443)
T PF04053_consen   93 IYKNFKNEVVKSIKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRID----VS-AVKYVIWSD-DGELVA  160 (443)
T ss_dssp             EEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES----S--E-EEEEE-T-TSSEEE
T ss_pred             EEEcCccccceEEcC-CcccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEe----cC-CCcEEEEEC-CCCEEE
Confidence            974333333334432 22344442    25677766654 79999999999999996    33 489999998 888888


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCC
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      ..+.+ .+.+++........            .+.............-...|.+..|.++.++-.+.. .++.  +..++
T Consensus       161 l~t~~-~i~il~~~~~~~~~------------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge  224 (443)
T PF04053_consen  161 LVTKD-SIYILKYNLEAVAA------------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE  224 (443)
T ss_dssp             EE-S--SEEEEEE-HHHHHH------------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE
T ss_pred             EEeCC-eEEEEEecchhccc------------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC
Confidence            87755 66666554410000            000001112333333366788888887655544444 5555  33332


Q ss_pred             CCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                             ...+..+   ..++.-+...+..  ..+.....|+.+..+.+.
T Consensus       225 -------~~~i~~l---d~~~yllgy~~~~--~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  225 -------TGIIAHL---DKPLYLLGYLPKE--NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             -------EEEEEE----SS--EEEEEETTT--TEEEEE-TT--EEEEE--
T ss_pred             -------cceEEEc---CCceEEEEEEccC--CEEEEEECCCCEEEEEEC
Confidence                   0122222   2345555566644  456666666666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.54  E-value=6.1e-05  Score=60.44  Aligned_cols=264  Identities=12%  Similarity=0.033  Sum_probs=138.4

Q ss_pred             EEEEeecCCCccEEEEEcC-----------CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee--
Q 019117           39 VVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG--  105 (346)
Q Consensus        39 ~~~~p~~~~~~~~la~~~~-----------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--  105 (346)
                      +..+|    +++.++++..           |-|.+||..+......+.-...+......+.-.+..+.||+ +++...  
T Consensus        41 ~~~sp----dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~~V~N~T  115 (342)
T PF06433_consen   41 VALSP----DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FLYVQNFT  115 (342)
T ss_dssp             EEE-T----TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS-EEEEEEES
T ss_pred             eeECC----CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc-EEEEEccC
Confidence            55677    6777776542           22999999887776655432110000011111234458888 666653  


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecc-cCCCCcce-EEEEe
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAG-AGGHRNEV-LSVDF  182 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~~~v-~~~~~  182 (346)
                      -.-.|.|-|+..++.+..+... +   |.-..|..+.-|.+-+.||.+.-..+. .|+....... ......++ ..-++
T Consensus       116 Pa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~  191 (342)
T PF06433_consen  116 PATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY  191 (342)
T ss_dssp             SSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred             CCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence            3467889999988888877632 2   333334355678888899999999887 4554422211 11112222 23334


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee--
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV--  258 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~--  258 (346)
                      .. .+..++--+.+|.|+--|+.........+.........           .-...++.-.-++++  .+.|.+--.  
T Consensus       192 ~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~-----------~~~WrPGG~Q~~A~~~~~~rlyvLMh~g  259 (342)
T PF06433_consen  192 SR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK-----------ADGWRPGGWQLIAYHAASGRLYVLMHQG  259 (342)
T ss_dssp             ET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH-----------HTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred             EC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc-----------ccCcCCcceeeeeeccccCeEEEEecCC
Confidence            43 33334446778999988887744322222111100000           000011111122332  223222211  


Q ss_pred             ------c--CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-EEcCCCcEEEEEcCCCCcceee
Q 019117          259 ------D--NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       259 ------d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                            |  ..|-++|+.+.+         .+.++... .++.+|..+.|.+ .+|. ....++.|.+||..+++.+...
T Consensus       260 ~~gsHKdpgteVWv~D~~t~k---------rv~Ri~l~-~~~~Si~Vsqd~~-P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  260 GEGSHKDPGTEVWVYDLKTHK---------RVARIPLE-HPIDSIAVSQDDK-PLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             -TT-TTS-EEEEEEEETTTTE---------EEEEEEEE-EEESEEEEESSSS--EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             CCCCccCCceEEEEEECCCCe---------EEEEEeCC-CccceEEEccCCC-cEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence                  1  137777888776         56666542 3678999999886 4554 4567899999999999877665


Q ss_pred             eeeee
Q 019117          330 RLICF  334 (346)
Q Consensus       330 ~~~~~  334 (346)
                      ..-+.
T Consensus       329 ~~lG~  333 (342)
T PF06433_consen  329 EQLGE  333 (342)
T ss_dssp             ---SS
T ss_pred             hccCC
Confidence            54443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.48  E-value=0.00038  Score=60.97  Aligned_cols=268  Identities=12%  Similarity=0.050  Sum_probs=130.7

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEE-EEEEEcCCCCcEEEEee---------cCCeEEEEEccCc
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGIPFLVAGG---------INGIIRVIDVSNE  118 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~  118 (346)
                      ..+..++.++ |..+|..+++.+.....-........+.. ..+.   ++  .++.++         .+|.+..+|..++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KK--LVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CC--EEEEeccccccccCCCCcEEEEEECCCC
Confidence            4555555555 99999999988766553111000000110 1111   22  454543         3688999999999


Q ss_pred             ceeeeeccCCCc--------------------e-EEEEEeCCCCceEEEeeCCC------------------CEEEEecC
Q 019117          119 KLHKSFVGHGDS--------------------I-NEIRTQPLKPSLVVSASKDE------------------SVRLWNVQ  159 (346)
Q Consensus       119 ~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~s~~~d~------------------~i~iwd~~  159 (346)
                      +.+..+......                    + ...++.+ ....++.++.++                  .|.-+|..
T Consensus       186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence            988776532110                    1 1233444 456677776554                  69999999


Q ss_pred             CCeeEEEecccCCCCc----ceEEEEec---CCCC---cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccc
Q 019117          160 TGICILIFAGAGGHRN----EVLSVDFH---PSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  229 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~----~v~~~~~~---~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
                      +|+.+..++.. .+..    ......+.   ..++   ..++.++.+|.+...|.++++...............      
T Consensus       265 tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~------  337 (488)
T cd00216         265 TGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYD------  337 (488)
T ss_pred             CCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccC------
Confidence            99999887632 1111    00000111   0122   367888889999999999966543332210000000      


Q ss_pred             eeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          230 QFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                      ...++.-..+..  ..+......+.....+|.+.-.|+.+++................ ..+...-.....+  .+|+.+
T Consensus       338 ~~~vyv~~~~~~--~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~-g~~~~~~~~~~~g--~~v~~g  412 (488)
T cd00216         338 PGLVYLGAFHIP--LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI-GFPHWGGSLATAG--NLVFAG  412 (488)
T ss_pred             CceEEEcccccc--ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc-CCcccCcceEecC--CeEEEE
Confidence            000000000000  00000000000112355666667766653222111100000000 0011100111233  478888


Q ss_pred             cCCCcEEEEEcCCCCcceeeeeeeeE
Q 019117          310 NREGKIFVWELQSSPPVLIARLICFS  335 (346)
Q Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~  335 (346)
                      +.||.|+.+|..+|+.+-..++.+.+
T Consensus       413 ~~dG~l~ald~~tG~~lW~~~~~~~~  438 (488)
T cd00216         413 AADGYFRAFDATTGKELWKFRTPSGI  438 (488)
T ss_pred             CCCCeEEEEECCCCceeeEEECCCCc
Confidence            99999999999999988777775543

The alignment model contains an 8-bladed beta-propeller.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.42  E-value=0.00051  Score=54.61  Aligned_cols=219  Identities=12%  Similarity=0.027  Sum_probs=121.5

Q ss_pred             EEcCCCCcEEEEeecCC-eEEEEEccCcceeeeeccCCCceE--EEEEeCCCCceEEEeeC-----CCCEEEEecC-CCe
Q 019117           92 ACNVDGIPFLVAGGING-IIRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSASK-----DESVRLWNVQ-TGI  162 (346)
Q Consensus        92 ~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~-----d~~i~iwd~~-~~~  162 (346)
                      +.+|.....++.+-.-| ...+||..+++....+....+.-.  --.|++ ++.+|++.-.     .|.|-|||.. .-+
T Consensus        11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            33464443667776655 467899999988777654333221  356899 8888888643     4789999998 667


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecC-------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceE-
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-  234 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (346)
                      .+.++.   .+.-....+.+.| ++..|+.+...       |.-++ ++.+++..+..    .+.       .....+. 
T Consensus        90 ri~E~~---s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~----ld~-------~sG~ll~q  153 (305)
T PF07433_consen   90 RIGEFP---SHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVY----LDA-------RSGALLEQ  153 (305)
T ss_pred             EEeEec---CCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceec-ChhhcCCceEE----Eec-------CCCceeee
Confidence            777887   5766777888998 77666665321       11111 22222111110    000       0011111 


Q ss_pred             -EE--eecccceEEEEec--CCEEEEEeecCe-------EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117          235 -IA--SVHSNYVDCNRWL--GDFILSKSVDNE-------IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       235 -~~--~~~~~~i~~~~~~--~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                       .+  ..|...|+.+++.  |..++..-..|.       |-+++....- .....   .......-.+-+-+|+++.++.
T Consensus       154 ~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~---p~~~~~~l~~Y~gSIa~~~~g~  229 (305)
T PF07433_consen  154 VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPA---PEEQWRRLNGYIGSIAADRDGR  229 (305)
T ss_pred             eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccC---ChHHHHhhCCceEEEEEeCCCC
Confidence             23  3466677777777  222222222211       2233322210 00000   0011122245788999999984


Q ss_pred             cceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          303 YNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                       .+.+|+-..|.+.+||..+++.+....+.
T Consensus       230 -~ia~tsPrGg~~~~~d~~tg~~~~~~~l~  258 (305)
T PF07433_consen  230 -LIAVTSPRGGRVAVWDAATGRLLGSVPLP  258 (305)
T ss_pred             -EEEEECCCCCEEEEEECCCCCEeeccccC
Confidence             24455667889999999999876655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=1.6e-05  Score=70.02  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             EEEEEeecCCCccEEEEEcC----Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           38 AVVFNFIDSRYFNVFATVGG----NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~----~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      -..|+|    ...+||+++-    +| |.||- .+|++...+.        .++...+++++|..- .|+.|-.-|.+.+
T Consensus        20 i~SWHP----sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P~hatSLCWHpe~~-vLa~gwe~g~~~v   85 (1416)
T KOG3617|consen   20 ISSWHP----SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YPVHATSLCWHPEEF-VLAQGWEMGVSDV   85 (1416)
T ss_pred             ccccCC----CCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cceehhhhccChHHH-HHhhccccceeEE
Confidence            356888    4567777762    23 88876 5666433222        223333334447766 8888888999999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ  159 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  159 (346)
                      |...+.+.......|..+|..+.|++ ++..++++..-|.|.+|...
T Consensus        86 ~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   86 QKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            99888777666778999999999999 89999999999999999875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.41  E-value=8.5e-05  Score=49.06  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             eEEEEEE-EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           86 FYTVSWA-CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        86 v~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      |.+++++ ++.+|.+.|++|+.|..|++|+-  .+.+..+. ..+.|+++.-..  ...|+.+..+|+|-+|+-  .+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence            4556554 45677779999999999999974  35666666 456678887775  478999999999999985  4455


Q ss_pred             EEecccCCCCcceEEEEecC---CCCcEEEEEecCCeEE
Q 019117          165 LIFAGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVK  200 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~  200 (346)
                      ...+    ....+.++++..   ++...|++|-.+|.|-
T Consensus        75 WRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5555    344577777653   1234688888888774

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=2.4e-07  Score=81.38  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=105.3

Q ss_pred             ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-
Q 019117          119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-  197 (346)
Q Consensus       119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-  197 (346)
                      +..+++..|+...+|++|+- +.++|+.|+..|.|+++++.+|.......   +|.++|+.+.-+. ++..+++.+.-. 
T Consensus      1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc---ccccccccccccC-CcceeeeeccccC
Confidence            34566778889999999999 88999999999999999999999888888   8999999999987 666666554433 


Q ss_pred             -eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC
Q 019117          198 -TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP  274 (346)
Q Consensus       198 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~  274 (346)
                       -..+|++...                      ..+..++.    .-.++.|+  -+.-+.|.......+||+.++..  
T Consensus      1167 PlsaLW~~~s~----------------------~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~-- 1218 (1516)
T KOG1832|consen 1167 PLSALWDASST----------------------GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP-- 1218 (1516)
T ss_pred             chHHHhccccc----------------------cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH--
Confidence             4678998771                      11222222    22355665  22334444445688999998763  


Q ss_pred             CCccccccccc-cC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          275 GEGTADILQKY-PV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       275 ~~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                             +.++ ..   ....-....|+|+.  .+++   .||  .+||++..+
T Consensus      1219 -------l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1219 -------LQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred             -------HHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHH
Confidence                   3221 11   11122556777776  3444   344  257766543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.40  E-value=9.6e-05  Score=63.88  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCccee---e-
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH---K-  122 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~-  122 (346)
                      .+++++.|++-| +++|+...+.. ..++.   +.....+  +..+.+++.. ++|.|+..|.|.++-++.+.+.   . 
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~-~~~~~---~~~~~~~--~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEM-RKLKN---EGATGIT--CVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             CCceEEEecccceEEEEecCchhh-hcccc---cCccceE--EEEEecchhH-hhhhhcCCceEEeehhhccCCCcceee
Confidence            568999999888 88888554443 32221   1122222  2333446666 8899999999999988764321   1 


Q ss_pred             -ee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117          123 -SF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus       123 -~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                       .. +.|...|++++|++ ++..+++|...|+|.+-.+..
T Consensus       117 t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence             11 23788999999999 999999999999998887765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=8.7e-05  Score=65.58  Aligned_cols=186  Identities=11%  Similarity=0.192  Sum_probs=116.4

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC-----eEEEEEccCc---
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-----IIRVIDVSNE---  118 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~---  118 (346)
                      .+..+|.|+.+| |.+++ ..-+.+..++.+     ...+  +.+....++.++|++.+.|+     .++||+++.-   
T Consensus        34 ~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~-----~~si--v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILN-SSFQLIRGFQAY-----EQSI--VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             CCceEEEeeccccEEEec-ccceeeehheec-----chhh--hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            567888888888 77776 222222444432     2221  23333345544888877665     4999998643   


Q ss_pred             ---ceee--eec-----cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC----CCeeEEEecccCCCCcceEEEEecC
Q 019117          119 ---KLHK--SFV-----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ----TGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       119 ---~~~~--~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                         .++.  .+.     ....++.+++.+. +-..++.|-.+|.|..+.-+    .+.......   .-.++|+++++..
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~---~~~~pITgL~~~~  181 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH---RGKEPITGLALRS  181 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeec---cCCCCceeeEEec
Confidence               2231  111     2356788999998 78899999999999988532    111111111   3467999999986


Q ss_pred             CCCcE-EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec-eEEEeecccceEEEEec-CCE-EEEEeecC
Q 019117          185 SDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP-VFIASVHSNYVDCNRWL-GDF-ILSKSVDN  260 (346)
Q Consensus       185 ~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~-~~~-l~~~~~d~  260 (346)
                       ++.. +++++ ...|.+|.+..                       +.| ...+..|...+.|..++ +.. +++++ +.
T Consensus       182 -d~~s~lFv~T-t~~V~~y~l~g-----------------------r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e  235 (933)
T KOG2114|consen  182 -DGKSVLFVAT-TEQVMLYSLSG-----------------------RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE  235 (933)
T ss_pred             -CCceeEEEEe-cceeEEEEecC-----------------------CCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence             5554 44443 45799999886                       122 33466777888898888 444 44444 34


Q ss_pred             eEEEEcCCCCC
Q 019117          261 EIVLWEPKMKE  271 (346)
Q Consensus       261 ~i~iwd~~~~~  271 (346)
                      .+.+|+....+
T Consensus       236 ~l~fY~sd~~~  246 (933)
T KOG2114|consen  236 FLYFYDSDGRG  246 (933)
T ss_pred             eEEEEcCCCcc
Confidence            69999988654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.39  E-value=0.00014  Score=66.86  Aligned_cols=198  Identities=13%  Similarity=0.132  Sum_probs=116.3

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      +.|.++.|..    +..-++.+...| |.+-|..+... . +-+.    ....|.+.+|+  ||++ .++..+..+++.+
T Consensus        69 ~~i~s~~fl~----d~~~i~v~~~~G~iilvd~et~~~-e-ivg~----vd~GI~aaswS--~Dee-~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFLA----DTNSICVITALGDIILVDPETLEL-E-IVGN----VDNGISAASWS--PDEE-LLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEec----ccceEEEEecCCcEEEEcccccce-e-eeee----ccCceEEEeec--CCCc-EEEEEeCCcEEEE
Confidence            5788888887    334444444444 77777655433 1 2221    45678778887  8888 8888887777766


Q ss_pred             EEc----cCcce-------------------eeeeccC---------------------CCceEEEEEeCCCCceEEEe-
Q 019117          113 IDV----SNEKL-------------------HKSFVGH---------------------GDSINEIRTQPLKPSLVVSA-  147 (346)
Q Consensus       113 wd~----~~~~~-------------------~~~~~~~---------------------~~~v~~~~~~~~~~~~l~s~-  147 (346)
                      -.-    -..+.                   ...+++.                     .+.=+.|.|-- ++.++++. 
T Consensus       136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~  214 (1265)
T KOG1920|consen  136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSF  214 (1265)
T ss_pred             EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEE
Confidence            432    11111                   0111110                     01123588887 78888873 


Q ss_pred             ----eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe---cCCeEEEEEccccceeeeeceeecCC
Q 019117          148 ----SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDL  220 (346)
Q Consensus       148 ----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~  220 (346)
                          ...+.|++||-+ |..-..-.   ...+.=.+++|-| .|.++++-.   .|+.|.+|.-.....           
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns~se---~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h-----------  278 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNSTSE---PVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH-----------  278 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhcccC---cccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc-----------
Confidence                333789999976 43322222   2334446899999 888888763   355788887655211           


Q ss_pred             CCCCCCccceeceEEEeecccceEEEEec--CCEEEE---EeecCeEEEEcCCCC
Q 019117          221 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS---KSVDNEIVLWEPKMK  270 (346)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~---~~~d~~i~iwd~~~~  270 (346)
                               +.-..........+..++|+  +..|++   ......|++|-+.+.
T Consensus       279 ---------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  279 ---------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ---------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence                     00011122233348889998  677777   445556999988765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.37  E-value=0.0002  Score=60.85  Aligned_cols=115  Identities=8%  Similarity=0.081  Sum_probs=79.0

Q ss_pred             ceEEEEEeCCCCceEEEee----CCCC----EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          130 SINEIRTQPLKPSLVVSAS----KDES----VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~----~d~~----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                      ...++.|+-..++.+.+..    .+|.    -++|++...+....-...-.....|.+++++| +...++.|..||.|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            3467788875666666542    3443    34666654432211111114778999999999 8899999999999999


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ||....                         +.......-..+.++|+  |..+++|+..|.+.+||+.-.
T Consensus       286 yD~~~~-------------------------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  286 YDTTRG-------------------------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCC-------------------------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999772                         22222334456778887  779999999999999998644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.35  E-value=0.00035  Score=58.61  Aligned_cols=78  Identities=12%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee-ccC----------
Q 019117           59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGH----------  127 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~----------  127 (346)
                      ...+||+.++........      ...+....|+  |+|+ .++-.. ++.|.+++..+++..+.- .+.          
T Consensus        24 ~y~i~d~~~~~~~~l~~~------~~~~~~~~~s--P~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw   93 (353)
T PF00930_consen   24 DYYIYDIETGEITPLTPP------PPKLQDAKWS--PDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW   93 (353)
T ss_dssp             EEEEEETTTTEEEESS-E------ETTBSEEEE---SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred             eEEEEecCCCceEECcCC------ccccccceee--cCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence            388899887654433322      2344446666  9998 777775 678999998776544322 220          


Q ss_pred             ------CCceEEEEEeCCCCceEEEe
Q 019117          128 ------GDSINEIRTQPLKPSLVVSA  147 (346)
Q Consensus       128 ------~~~v~~~~~~~~~~~~l~s~  147 (346)
                            -+.-..+-|+| ++++|+..
T Consensus        94 vyeEEv~~~~~~~~WSp-d~~~la~~  118 (353)
T PF00930_consen   94 VYEEEVFDRRSAVWWSP-DSKYLAFL  118 (353)
T ss_dssp             HHHHHTSSSSBSEEE-T-TSSEEEEE
T ss_pred             eccccccccccceEECC-CCCEEEEE
Confidence                  11235788999 66666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.32  E-value=0.00064  Score=51.91  Aligned_cols=104  Identities=20%  Similarity=0.120  Sum_probs=78.5

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      ++.+.+++.|+..+.+.--|..+|+....-. -...+.+-+.-  -+++++.|...|.+++.+.++|.....+..    .
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~   92 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L   92 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence            5556699999999999999999998775433 12333333333  256799999999999999999998888873    3


Q ss_pred             cceEE-EEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          175 NEVLS-VDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       175 ~~v~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      +.|.+ ....+ ++.++..++.|++....|.++
T Consensus        93 ~~vk~~a~~d~-~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   93 ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             hhhccceEEcC-CCceEEEecCCCcEEEecccc
Confidence            33332 33455 788999999999999999988

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.31  E-value=0.0015  Score=55.11  Aligned_cols=227  Identities=11%  Similarity=0.015  Sum_probs=119.5

Q ss_pred             eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-------------------------------------------eee
Q 019117           86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------------------------------------------LHK  122 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~~~  122 (346)
                      |..++++  ++.. -|++|...|.|.||.+...+                                           +..
T Consensus         4 v~~vs~a--~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    4 VTHVSFA--PETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             EEEEEEE--TTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             EEEEEec--CCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            4556666  6665 78888888998888763211                                           011


Q ss_pred             eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC-----CCCcceEEEEecC----CC---CcEE
Q 019117          123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHP----SD---IYRI  190 (346)
Q Consensus       123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~---~~~l  190 (346)
                      .+....++|++++.+  +-.+++.|..+|.+.|.|++....+..-....     .....|+++.|..    ++   .-.+
T Consensus        81 l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   81 LLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             heeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            222346789999997  56799999999999999998777776532211     1345688888862    12   2578


Q ss_pred             EEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE-ec-------------------
Q 019117          191 ASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-WL-------------------  249 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-------------------  249 (346)
                      ++|+..|.+.+|.+.. ........+                 ......+.+.|..+. ++                   
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~-----------------~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQF-----------------AGATTNHDSPILSIIPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEE-----------------EEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEE-----------------eeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence            8899999999998863 111111000                 001112223322222 10                   


Q ss_pred             C---CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-----ecCCcceEEEEcCCCcEEEEEcC
Q 019117          250 G---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-----CDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       250 ~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +   ..++....+..+|++..-+.+.         ..+..........+.+-     ..+  ..|++-..+|.|+++.+.
T Consensus       222 g~~i~g~vVvvSe~~irv~~~~~~k~---------~~K~~~~~~~~~~~~vv~~~~~~~~--~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  222 GISIPGYVVVVSESDIRVFKPPKSKG---------AHKSFDDPFLCSSASVVPTISRNGG--YCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             T----EEEEEE-SSEEEEE-TT---E---------EEEE-SS-EEEEEEEEEEEE-EEEE--EEEEEEETTSEEEEEETT
T ss_pred             CCCcCcEEEEEcccceEEEeCCCCcc---------cceeeccccccceEEEEeecccCCc--eEEEEEECCCcEEEEECC
Confidence            1   1244445567899999887652         22221111122334442     233  578888899999999999


Q ss_pred             CCCcceeeeeeee-----EEEEEecCCCC
Q 019117          322 SSPPVLIARLICF-----SLHVKYNPQSV  345 (346)
Q Consensus       322 ~~~~~~~~~~~~~-----~~~~~~spdg~  345 (346)
                      .-+.+....+...     .....++++|.
T Consensus       291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  291 SLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             T--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             CchHhhcccCCCccccccccccEECCCCC
Confidence            9776665555322     12345566553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.29  E-value=0.0014  Score=54.21  Aligned_cols=225  Identities=12%  Similarity=0.097  Sum_probs=124.1

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC----CCcEEEEeec----------CCeEEEEEccCc----cee
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD----GIPFLVAGGI----------NGIIRVIDVSNE----KLH  121 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~l~~~~~----------dg~i~iwd~~~~----~~~  121 (346)
                      |++.|..+.+.+..+.-   + ..+.+.+++...-++    ..++|++|..          .|.|.++++...    ..+
T Consensus         4 i~l~d~~~~~~~~~~~l---~-~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l   79 (321)
T PF03178_consen    4 IRLVDPTTFEVLDSFEL---E-PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL   79 (321)
T ss_dssp             EEEEETTTSSEEEEEEE---E-TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred             EEEEeCCCCeEEEEEEC---C-CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence            77888766665544432   1 345555554433232    1448887753          289999999884    122


Q ss_pred             eee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117          122 KSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       122 ~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  198 (346)
                      ..+  ....++|++++-..  +. |+.+. .+.|.+|++...+ ....-..  .....+.++...   +++++.|.....
T Consensus        80 ~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~---~~~I~vgD~~~s  150 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVF---KNYILVGDAMKS  150 (321)
T ss_dssp             EEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE---TTEEEEEESSSS
T ss_pred             EEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhhee--cceEEEEEEecc---ccEEEEEEcccC
Confidence            222  23578899988873  44 44443 3789999998777 4433321  133466777665   458889988888


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                      +.++..+....                    .............++++.+-  ++.++.+..+|.+.++...........
T Consensus       151 v~~~~~~~~~~--------------------~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~  210 (321)
T PF03178_consen  151 VSLLRYDEENN--------------------KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRD  210 (321)
T ss_dssp             EEEEEEETTTE---------------------EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred             EEEEEEEccCC--------------------EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccc
Confidence            88875554110                    11122223345567777775  569999999999999988743221111


Q ss_pred             c--cccccccccCCCcCeeEE---EEeec--CCc----ceEEEEcCCCcEEEE
Q 019117          277 G--TADILQKYPVPECDIWFI---KFSCD--FHY----NAAAIGNREGKIFVW  318 (346)
Q Consensus       277 ~--~~~~~~~~~~~~~~v~~~---~~s~~--~~~----~~l~~~~~dg~i~iw  318 (346)
                      .  .......+... ..|+++   ++.|.  +..    ..++.++.+|.|...
T Consensus       211 ~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  211 GDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            1  11122222222 356666   44442  211    247777888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.27  E-value=0.001  Score=51.95  Aligned_cols=215  Identities=8%  Similarity=0.042  Sum_probs=107.0

Q ss_pred             ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      ...+..++|.  |+...++++....+.|..++. +|+.++.++-. .+..-.|++.. ++.++++--.++.+.++++...
T Consensus        21 ~~e~SGLTy~--pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   21 LDELSGLTYN--PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             -S-EEEEEEE--TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred             cCCccccEEc--CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence            3457778877  876548888888899988886 57877776533 35678899986 6666666656899999988432


Q ss_pred             e------eEEEec--ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          162 I------CILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       162 ~------~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      .      ....+.  ....+...+-.++|+| .++.|+.+-...-..+|.+...........            ......
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~------------~~~~~~  163 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFV------------SDDQDL  163 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EE------------EE-HHH
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceee------------cccccc
Confidence            1      112222  1113456789999999 555566666666677777765110000000            000000


Q ss_pred             EEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117          234 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      .........+.++.++   +++++.......|..+|.. ++.........-...+...-...-.|+|.++|  + |...+
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~-LYIvs  239 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--N-LYIVS  239 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEE
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCC--C-EEEEc
Confidence            0011223346677777   5677778888888888844 33100000000000001111346779999988  3 44445


Q ss_pred             CCCcEEEE
Q 019117          311 REGKIFVW  318 (346)
Q Consensus       311 ~dg~i~iw  318 (346)
                      +-+..++|
T Consensus       240 EpNlfy~f  247 (248)
T PF06977_consen  240 EPNLFYRF  247 (248)
T ss_dssp             TTTEEEEE
T ss_pred             CCceEEEe
Confidence            66665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.24  E-value=2.6e-07  Score=78.17  Aligned_cols=171  Identities=14%  Similarity=0.221  Sum_probs=113.3

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCC----c-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----R-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .....+|....++++|++.|   .+.||.|-+.    . +.|||+.++  .+....+-..  .......+++|.  .+.+
T Consensus        95 ~E~tp~~ar~Ct~lAwneLD---tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwl--rd~k  167 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELD---TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWL--RDTK  167 (783)
T ss_pred             ceeccccccccccccccccc---HHHHHhhhhhhcccCCccceecccccCCCcccccccc--ccccCccccccc--cCcc
Confidence            34457888999999999953   4788887542    2 999999876  3332222111  133445567776  6777


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec-CC-CeeEEEeccc-CCCCc
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-QT-GICILIFAGA-GGHRN  175 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~-~~~~~~~~~~-~~~~~  175 (346)
                       ++.+|.....+.++|++... .....-.+..+..+...|..++++++-. ||.|.+||. +. .+++..+... .....
T Consensus       168 -lvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~  244 (783)
T KOG1008|consen  168 -LVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPK  244 (783)
T ss_pred             -hhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccc
Confidence             89999988899999987322 1111123456677888887778888766 899999993 32 2233333210 01223


Q ss_pred             ceEEEEecCCCCcEEEEEecC-CeEEEEEccc
Q 019117          176 EVLSVDFHPSDIYRIASCGMD-NTVKIWSMKE  206 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~  206 (346)
                      .+..++|.|....++++...| ++|+.+|+..
T Consensus       245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            589999999666677777665 5799999987

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.22  E-value=0.00012  Score=63.21  Aligned_cols=162  Identities=9%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      ..+.-.++.  ..++ +++.|+..|.+.+|+-..++... ...+..+.+..+..++ ...++|.|+..|.|.++.+..+.
T Consensus        34 ~~v~lTc~d--st~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   34 ARVKLTCVD--ATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             ceEEEEEee--cCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence            344444554  5567 99999999999999966655332 2223455666777787 88899999999999999887543


Q ss_pred             eEE--Ee-cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117          163 CIL--IF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  239 (346)
Q Consensus       163 ~~~--~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
                      +-.  .+ .....|...|++++|++ ++..+++|...|+|..-.+.....                   ...+...+..-
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~-------------------~~~~~q~il~~  169 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQA-------------------FLSKSQEILSE  169 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhh-------------------hccccceeecc
Confidence            211  11 11123688999999998 999999999999999887766100                   01223344445


Q ss_pred             ccceEEEEecCCEEEEEeecCeEEEEcCCCC
Q 019117          240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       240 ~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ...|..+.+...+|++++.-. -.+++....
T Consensus       170 ds~IVQlD~~q~~LLVStl~r-~~Lc~tE~e  199 (726)
T KOG3621|consen  170 DSEIVQLDYLQSYLLVSTLTR-CILCQTEAE  199 (726)
T ss_pred             CcceEEeecccceehHhhhhh-hheeecchh
Confidence            666777777755544444333 235555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.18  E-value=0.0021  Score=51.92  Aligned_cols=240  Identities=10%  Similarity=-0.010  Sum_probs=128.1

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee----
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS----  123 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----  123 (346)
                      .++.|+.|.++|+.+++.........+.      +...|..+...  ++-+ .|++-+ |+.+.++++..-.....    
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~------~~~~I~ql~vl--~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDPSKPTRIL------KLSSITQLSVL--PELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCCccceeEe------ecceEEEEEEe--cccC-EEEEEc-CCccEEEEchhhccccccccc
Confidence            4678888989999999983333322222      22237667766  5554 555554 59999999876543321    


Q ss_pred             ----------eccCCCceEEEE--EeCCCCceEEEeeCCCCEEEEecCCC-----eeEEEecccCCCCcceEEEEecCCC
Q 019117          124 ----------FVGHGDSINEIR--TQPLKPSLVVSASKDESVRLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       124 ----------~~~~~~~v~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                                .......+...+  -...+...|+.+ ...+|.+|.....     +..+++.    -...+.+++|.+  
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~~--  148 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFLG--  148 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEeC--
Confidence                      111233444444  112133344444 4568999888653     4556665    568899999983  


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW  265 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iw  265 (346)
                       +.++.|.. +...+.|+.+.............           ...........++..+... +.+|++-  |..-.+.
T Consensus       149 -~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv  213 (275)
T PF00780_consen  149 -NKICVGTS-KGFYLIDLNTGSPSELLDPSDSS-----------SSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFV  213 (275)
T ss_pred             -CEEEEEeC-CceEEEecCCCCceEEeCccCCc-----------chhhhcccCCCceEEEEeCCceEEEEe--cceEEEE
Confidence             45666654 45778888863321111000000           0001111122334444444 4455542  3344444


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      |......        ....+... ..+.++++..    .+|++.+.+ .|.||++.+++.++....++
T Consensus       214 ~~~G~~~--------r~~~i~W~-~~p~~~~~~~----pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  214 NKNGEPS--------RKSTIQWS-SAPQSVAYSS----PYLIAFSSN-SIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             cCCCCcC--------cccEEEcC-CchhEEEEEC----CEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence            5433210        11122222 2445565643    467776664 59999999998877766554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.17  E-value=0.0014  Score=54.20  Aligned_cols=181  Identities=11%  Similarity=0.182  Sum_probs=107.1

Q ss_pred             CeEEEEEccCcceeeeecc-CCCceEE---EEEeCC---CCceEEEeeC----------CCCEEEEecCCC----eeEEE
Q 019117          108 GIIRVIDVSNEKLHKSFVG-HGDSINE---IRTQPL---KPSLVVSASK----------DESVRLWNVQTG----ICILI  166 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~-~~~~v~~---~~~~~~---~~~~l~s~~~----------d~~i~iwd~~~~----~~~~~  166 (346)
                      ..|++.|..+.+.+..+.- ....+.+   +.+..+   ...+|+.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3578888877776655432 2233343   333321   1467776643          288999999874    22222


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      +... ...++|++++-.  ++.++++.  ++.|.+|++...+.                     ..........-.+.++
T Consensus        82 i~~~-~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~---------------------l~~~~~~~~~~~i~sl  135 (321)
T PF03178_consen   82 IHST-EVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKT---------------------LLKKAFYDSPFYITSL  135 (321)
T ss_dssp             EEEE-EESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSS---------------------EEEEEEE-BSSSEEEE
T ss_pred             EEEE-eecCcceEhhhh--CCEEEEee--cCEEEEEEccCccc---------------------chhhheecceEEEEEE
Confidence            2111 357899999876  45544433  47999999988320                     0111111223367788


Q ss_pred             EecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          247 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       247 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      ...+++++.|.....+.++..+....     ....+.. ......++++.|-+++  +.++++..+|.+.++....
T Consensus       136 ~~~~~~I~vgD~~~sv~~~~~~~~~~-----~l~~va~-d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  136 SVFKNYILVGDAMKSVSLLRYDEENN-----KLILVAR-DYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEETTEEEEEESSSSEEEEEEETTTE------EEEEEE-ESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-S
T ss_pred             eccccEEEEEEcccCEEEEEEEccCC-----EEEEEEe-cCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECC
Confidence            77799999999988888885554210     0111111 1224468888888777  4899999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.13  E-value=0.0029  Score=52.09  Aligned_cols=147  Identities=13%  Similarity=0.079  Sum_probs=78.1

Q ss_pred             CccEEEE-EcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117           48 YFNVFAT-VGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS  123 (346)
Q Consensus        48 ~~~~la~-~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  123 (346)
                      +|+.|+. +..++   +.+.|+.+++..+....-     ........++  ++.+ .++-......|+-.|+++.+....
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-----g~~~~g~~~s--~~~~-~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-----GDNTFGGFLS--PDDR-ALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS------B-TTT-EE---TTSS-EEEEEETTTEEEEEETTT--EEEE
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCC-----CCCccceEEe--cCCC-eEEEEECCCeEEEEECCcCcEEEE
Confidence            5544444 44344   888888887765544421     1111113333  7777 665555567899999999887666


Q ss_pred             eccCCCceEEEEEeCC-CCceEEEee---C-------------------CCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          124 FVGHGDSINEIRTQPL-KPSLVVSAS---K-------------------DESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       124 ~~~~~~~v~~~~~~~~-~~~~l~s~~---~-------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +......+-...|..+ +...++-.-   .                   ...|.-.|+.+|+....+.    ....+..+
T Consensus       118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----~~~wlgH~  193 (386)
T PF14583_consen  118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----DTDWLGHV  193 (386)
T ss_dssp             EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----ESS-EEEE
T ss_pred             EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----cCccccCc
Confidence            6666666655666432 333433211   1                   1235566788877666665    56788899


Q ss_pred             EecCCCCcEEEEEec---CCe-EEEEEccc
Q 019117          181 DFHPSDIYRIASCGM---DNT-VKIWSMKE  206 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~---d~~-i~iwd~~~  206 (346)
                      .|+|.+..+|+-|.+   +.. -+||-++.
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            999977777777654   222 37787766

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.11  E-value=0.0021  Score=49.19  Aligned_cols=137  Identities=14%  Similarity=0.051  Sum_probs=88.6

Q ss_pred             ccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117           49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH  127 (346)
Q Consensus        49 ~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  127 (346)
                      ..+++.|+..+ +.-.|..+|+......      -+..+.+-++.   -|. +++.|..+|.+.+.+.++|.....+..-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i------lg~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI------LGVRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh------hCceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhheeeeeeh
Confidence            35677777666 7777777777544322      33444444443   245 8999999999999999999887777643


Q ss_pred             CCceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          128 GDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       128 ~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                      . .|. .....+ ++.++..|+.|++.+..|.++..++...+.   -.+...+=+..| ...-|+.+...|.+.-
T Consensus        93 ~-~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskc---gG~~f~sP~i~~-g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen   93 E-TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKC---GGGTFVSPVIAP-GDGSLYAAITAGAVLA  161 (354)
T ss_pred             h-hhccceEEcC-CCceEEEecCCCcEEEecccccceEEeccc---CCceeccceecC-CCceEEEEeccceEEE
Confidence            2 232 233444 788999999999999999999999988762   222222333444 3333444444455443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.09  E-value=0.00061  Score=45.10  Aligned_cols=104  Identities=10%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      |++|++...+....+-|++|++|. |++|+-  .+.+..+.      ..+.+..++-.  .. . .++.+..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~------e~~~v~~L~~~--~~-~-~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT------ETDKVTSLCSL--GG-G-RFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe------cccceEEEEEc--CC-C-EEEEEecCCEEEEEe
Confidence            778888875543346788888888 999983  34444444      34455555443  33 3 799999999999998


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCC---CceEEEeeCCCCEE
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLK---PSLVVSASKDESVR  154 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~  154 (346)
                      -  .+.+..++.- ..+.++.+...+   ...|++|-.+|.|-
T Consensus        70 ~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   70 R--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             C--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4  3344455533 336666665422   23788888888764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.08  E-value=0.0014  Score=57.26  Aligned_cols=255  Identities=14%  Similarity=0.079  Sum_probs=133.1

Q ss_pred             EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCc--------cceE---------------EEEEEE---cCCCCcEEEE
Q 019117           51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE--------ESFY---------------TVSWAC---NVDGIPFLVA  103 (346)
Q Consensus        51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~--------~~v~---------------~~~~~~---~~~~~~~l~~  103 (346)
                      .|.+|+..+ |+|+-+-+.+.++.+..|....-.        ..+.               ...+++   ..||+ +|..
T Consensus        68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr-~~fi  146 (635)
T PRK02888         68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR-YLFI  146 (635)
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee-EEEE
Confidence            355666666 999999888888888777543210        1111               011111   13566 5655


Q ss_pred             ee-cCCeEEEEEccCcceeeeecc-CCCceEEEEEe--CCCCceEEEe------------------eCCCCEEEEecCCC
Q 019117          104 GG-INGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQ--PLKPSLVVSA------------------SKDESVRLWNVQTG  161 (346)
Q Consensus       104 ~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~s~------------------~~d~~i~iwd~~~~  161 (346)
                      -. .+..|...+++.-++-+.+.- ....+..+.+-  | +..+++.+                  -..+.+.+.|..+.
T Consensus       147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm  225 (635)
T PRK02888        147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM  225 (635)
T ss_pred             ecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence            54 345565566554443222211 12223333332  3 22233322                  23355677777777


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecC---C-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---N-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      +....+.    -.+....++++| ++.++++.+.+   | ++..-+....                       .  ....
T Consensus       226 eV~~qV~----Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~-----------------------d--~~vv  275 (635)
T PRK02888        226 EVAWQVM----VDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAER-----------------------D--WVVV  275 (635)
T ss_pred             eEEEEEE----eCCCcccceECC-CCCEEEEeccCcccCcceeeeccccC-----------------------c--eEEE
Confidence            7666665    344567788898 66666666422   1 2222222110                       0  0011


Q ss_pred             ecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       238 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      .+...+..+.-.|++...  .++.|.+.|..+....    ....+..+... .....+.++|||+ .+++++..++.+.|
T Consensus       276 fni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~----~~~v~~yIPVG-KsPHGV~vSPDGk-ylyVanklS~tVSV  347 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANA----GSALTRYVPVP-KNPHGVNTSPDGK-YFIANGKLSPTVTV  347 (635)
T ss_pred             EchHHHHHhhhCCCEEEE--CCCEEEEEECCccccC----CcceEEEEECC-CCccceEECCCCC-EEEEeCCCCCcEEE
Confidence            111111111112555554  3678999999871000    00133333332 3678899999995 35666667999999


Q ss_pred             EEcCCCCc------------ceeeeeeeeEEEEEecCCCC
Q 019117          318 WELQSSPP------------VLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       318 wd~~~~~~------------~~~~~~~~~~~~~~~spdg~  345 (346)
                      .|+++.+.            +....+...+.+.+|.++|.
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~  387 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN  387 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence            99998653            23334444567888888874

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.00  E-value=0.0068  Score=51.13  Aligned_cols=95  Identities=16%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             EEEEEeecCCCccEEEEEcCCcEEE----EEec-cC----ceeeeEeeeecCCCccceEEEEEEEc---------CCCCc
Q 019117           38 AVVFNFIDSRYFNVFATVGGNRVTV----YQCL-EG----GVIAALQSYVDEDKEESFYTVSWACN---------VDGIP   99 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~v~i----~~~~-~~----~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~   99 (346)
                      .++.+|    ++++||.+..+.+.+    |+.. .+    ...............+.|+++.|.+-         +|.. 
T Consensus         6 ~isls~----~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~-   80 (415)
T PF14655_consen    6 SISLSP----DGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT-   80 (415)
T ss_pred             eEEecC----CCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE-
Confidence            356777    789999998888332    4321 11    12222222222223367888777643         4556 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP  138 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  138 (346)
                      .++.|..+|.|++|.. +|..+..-.-|.++|..+.+..
T Consensus        81 ~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   81 CIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             EEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            9999999999999994 6776666666888888888754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.00049  Score=61.18  Aligned_cols=69  Identities=12%  Similarity=0.085  Sum_probs=53.7

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      +++++|+|    ..-+||.|-.-+ +.+|...+.+......     .|..++..+.|+  ++|. .++++..-|.+.+|.
T Consensus        62 atSLCWHp----e~~vLa~gwe~g~~~v~~~~~~e~htv~~-----th~a~i~~l~wS--~~G~-~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   62 ATSLCWHP----EEFVLAQGWEMGVSDVQKTNTTETHTVVE-----THPAPIQGLDWS--HDGT-VLMTLDNPGSVHLWR  129 (1416)
T ss_pred             hhhhccCh----HHHHHhhccccceeEEEecCCceeeeecc-----CCCCCceeEEec--CCCC-eEEEcCCCceeEEEE
Confidence            45799999    556788887777 8999865544333222     377888888888  9999 999999999999998


Q ss_pred             cc
Q 019117          115 VS  116 (346)
Q Consensus       115 ~~  116 (346)
                      ..
T Consensus       130 ~d  131 (1416)
T KOG3617|consen  130 YD  131 (1416)
T ss_pred             ee
Confidence            75

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=7.5e-05  Score=63.70  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      .+..+.|+  |.-. ++|.+..+|.|.+..++ .+.+.+++-|...++ +++|.| ++++|+.|-.||+|++.|+.++..
T Consensus        22 ~i~~~ewn--P~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   22 NIKRIEWN--PKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ceEEEEEc--Cccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence            34556776  6555 99999999999999988 778888887887787 999999 899999999999999999999988


Q ss_pred             EEEecccCCCCcceEEEEecC
Q 019117          164 ILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      +..+..  .....|.++-|.+
T Consensus        97 l~~~~~--s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLF--SVETDISKGIWDR  115 (665)
T ss_pred             eecccc--ccccchheeeccc
Confidence            877321  2567788888875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.87  E-value=0.0014  Score=59.47  Aligned_cols=142  Identities=11%  Similarity=0.062  Sum_probs=91.6

Q ss_pred             EEEEe-ecCCeEEEEEccCcceeeeeccCCCc-eEEEEEeC----CCCceEEEeeCCCCEEEEecCCCe--eEEEecccC
Q 019117          100 FLVAG-GINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQP----LKPSLVVSASKDESVRLWNVQTGI--CILIFAGAG  171 (346)
Q Consensus       100 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~  171 (346)
                      +|+.- .....|+-.|+..|+.+.....|... |..++-..    ..+...+.|-.+..+..||.+-..  .+..-....
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y  574 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY  574 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence            44443 45678999999999999999877654 55543321    123455667778899999998542  221111011


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      .......|++-.  ...+|+.|+.+|.||+||--.                       ......+.+-..+|..|..+  
T Consensus       575 ~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g-----------------------~~AKT~lp~lG~pI~~iDvt~D  629 (794)
T PF08553_consen  575 SSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLG-----------------------KRAKTALPGLGDPIIGIDVTAD  629 (794)
T ss_pred             ccCCCceEEEec--CCceEEEEeCCCcEEeecccc-----------------------hhhhhcCCCCCCCeeEEEecCC
Confidence            234567788877  455699999999999998432                       11222344556788888887  


Q ss_pred             CCEEEEEeecCeEEEEcC
Q 019117          250 GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~  267 (346)
                      |+++++.+. ..+.+++.
T Consensus       630 GkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  630 GKWILATCK-TYLLLIDT  646 (794)
T ss_pred             CcEEEEeec-ceEEEEEE
Confidence            887776654 45667765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.87  E-value=0.013  Score=50.05  Aligned_cols=198  Identities=11%  Similarity=0.038  Sum_probs=97.6

Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc----CCCCcceEEEEecC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHP  184 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~  184 (346)
                      .|.||+. .|+.+..+.-..+.+.++.|.. + ..|+....||.++++|+. |+....+...    .-....+....+..
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence            5899984 5666666654448999999987 4 455566789999999986 4441111100    01112222223332


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeee-eceeecCCCCCCCCccceeceEEEeeccc--ceEEEEecCCEEEEEeecCe
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWLGDFILSKSVDNE  261 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~~~d~~  261 (346)
                       +|-.+++  .++.+.+  +.+...... +...  ..+.         .......+..  .+..+.-.....+....++.
T Consensus       138 -~GivvLt--~~~~~~~--v~n~~~~~~~~~~~--~~p~---------~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~  201 (410)
T PF04841_consen  138 -NGIVVLT--GNNRFYV--VNNIDEPVKLRRLP--EIPG---------LWTKFHWWPSWTVIPLLSSDRVVEILLANGET  201 (410)
T ss_pred             -CCEEEEC--CCCeEEE--EeCccccchhhccc--cCCC---------cccccccccccccceEeecCcceEEEEecCCE
Confidence             4433333  3344333  333221100 0000  0000         0000000111  01111111334444445556


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee--eeEEEEE
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI--CFSLHVK  339 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~  339 (346)
                      +.+.+-...+         .   +. ..+++..|+.||++  +++|.-..+|.+.+....-.+....+...  ..+..+.
T Consensus       202 i~~i~~~~~~---------~---i~-~~~~i~~iavSpng--~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~  266 (410)
T PF04841_consen  202 IYIIDENSFK---------Q---ID-SDGPIIKIAVSPNG--KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA  266 (410)
T ss_pred             EEEEEccccc---------c---cc-CCCCeEEEEECCCC--CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence            6644433211         1   11 23589999999999  68888888999988876555444444444  3344444


Q ss_pred             ec
Q 019117          340 YN  341 (346)
Q Consensus       340 ~s  341 (346)
                      |-
T Consensus       267 WC  268 (410)
T PF04841_consen  267 WC  268 (410)
T ss_pred             EE
Confidence            43

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.87  E-value=5e-05  Score=40.02  Aligned_cols=38  Identities=29%  Similarity=0.632  Sum_probs=33.0

Q ss_pred             ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117          119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN  157 (346)
Q Consensus       119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  157 (346)
                      +....+..|...|.++.|.+ ....+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            45566677889999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.86  E-value=0.0076  Score=53.00  Aligned_cols=205  Identities=13%  Similarity=0.064  Sum_probs=108.1

Q ss_pred             ccEEEEEcCCcEEEEEeccCceeeeEeeeecCC-CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117           49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDED-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH  127 (346)
Q Consensus        49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  127 (346)
                      +.+++....+.+.-+|..+++.+.......... ....+....... .++. .++.++.++.|..+|.++++.+..+...
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~-~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPR-KVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCC-eEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            344444444449999998888766554321100 000000000111 1213 6888888999999999999998877643


Q ss_pred             CCc-----e-EEEEEeCCCCceEEEee---------CCCCEEEEecCCCeeEEEecccCCCC-----------------c
Q 019117          128 GDS-----I-NEIRTQPLKPSLVVSAS---------KDESVRLWNVQTGICILIFAGAGGHR-----------------N  175 (346)
Q Consensus       128 ~~~-----v-~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~-----------------~  175 (346)
                      ...     + ....+.  + ..++.++         .++.+..+|..+|+.+..+.......                 .
T Consensus       140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            221     1 112222  2 3444543         36789999999999988876311100                 0


Q ss_pred             ce-EEEEecCCCCcEEEEEecCC------------------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          176 EV-LSVDFHPSDIYRIASCGMDN------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       176 ~v-~~~~~~~~~~~~l~s~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      .+ ...++.+ .+.+++.++.++                  .|.-+|+.+++..-........             ...+
T Consensus       217 ~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~-------------~~~~  282 (488)
T cd00216         217 TSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD-------------LWDY  282 (488)
T ss_pred             CccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC-------------Cccc
Confidence            01 1234444 455677776554                  6888888875543322110000             0000


Q ss_pred             eeccc-ceEEEE-ecCC---EEEEEeecCeEEEEcCCCCCC
Q 019117          237 SVHSN-YVDCNR-WLGD---FILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       237 ~~~~~-~i~~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~  272 (346)
                      ..... .+..+. .++.   .++.++.+|.+...|..+++.
T Consensus       283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         283 DGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             ccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence            00000 011111 1232   577788899999999999874

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.85  E-value=0.0066  Score=53.34  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=89.7

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee--------------------------
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS--------------------------  148 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------------------------  148 (346)
                      |||+....+.-..+.+.+.|.++.+....+.-- +....++++| ++.++++.+                          
T Consensus       202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            466522233334567778888776666555422 2345666777 555554443                          


Q ss_pred             --------------CCCCEEEEecCC-----CeeEEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccc
Q 019117          149 --------------KDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFW  208 (346)
Q Consensus       149 --------------~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  208 (346)
                                    .++.|.+.|..+     .+.+..+.    -......+.++| +++++ +++..+.+|.+.|+.+.+
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhh
Confidence                          124577777776     34455554    566778899999 66555 455568899999999855


Q ss_pred             eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117          209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  269 (346)
                      .........           .......... ...-...+|+  |+...+--.|..|..||+..
T Consensus       355 ~~~~~~~~~-----------~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        355 DLFDGKIKP-----------RDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhccCCc-----------cceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            322111000           0001111111 1122334555  56677777799999999876

>smart00320 WD40 WD40 repeats

Probab=97.75  E-value=0.00013  Score=38.35  Aligned_cols=38  Identities=37%  Similarity=0.567  Sum_probs=32.2

Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  203 (346)
                      +++..+.   .|...|.++.|++ .+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLK---GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEE---ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            4455565   6888999999998 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=3.9e-05  Score=57.19  Aligned_cols=141  Identities=11%  Similarity=-0.045  Sum_probs=77.9

Q ss_pred             eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117          143 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  222 (346)
Q Consensus       143 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  222 (346)
                      .+...+.||.|.-++++..+....-      ...+.+..--+.....++.|+.+|.|.+|..........          
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rs------e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d----------   95 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRS------ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD----------   95 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhh------hhhhhcceeecccCceEEeecccceEEEecCCccchHHH----------
Confidence            4445567888888887643321111      111111111112456799999999999998874211100          


Q ss_pred             CCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEe
Q 019117          223 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFS  298 (346)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s  298 (346)
                                  ....-...|.+....   +.+..+++.||.|+.|++.-.+         .+.....|. .++..+..+
T Consensus        96 ------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---------~~g~~g~h~~~~~e~~ivv  154 (238)
T KOG2444|consen   96 ------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---------VLGYVGQHNFESGEELIVV  154 (238)
T ss_pred             ------------hhhcccccceeccccccccceeEEeccCCceeeeccccCc---------eeeeeccccCCCcceeEEe
Confidence                        111112223333333   4588999999999999998776         333333344 344444444


Q ss_pred             ecCCcceEEEE--cCCCcEEEEEcCC
Q 019117          299 CDFHYNAAAIG--NREGKIFVWELQS  322 (346)
Q Consensus       299 ~~~~~~~l~~~--~~dg~i~iwd~~~  322 (346)
                      ..+  ++++..  |.|..++.|++..
T Consensus       155 ~sd--~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  155 GSD--EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cCC--ceEEeeccccchhhhhcchhh
Confidence            444  355555  6666777777654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0049  Score=56.07  Aligned_cols=148  Identities=10%  Similarity=0.014  Sum_probs=95.3

Q ss_pred             CCceEEE-eeCCCCEEEEecCCCeeEEEecccCCCC-cceEEEEecC----CCCcEEEEEecCCeEEEEEccccceeeee
Q 019117          140 KPSLVVS-ASKDESVRLWNVQTGICILIFAGAGGHR-NEVLSVDFHP----SDIYRIASCGMDNTVKIWSMKEFWTYVEK  213 (346)
Q Consensus       140 ~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  213 (346)
                      +.++|+. ......|+-.|++.|+.+..+..   +. .+|..++-..    -.....+.|-.+..+..||.|-....+. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-  567 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-  567 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence            3344443 34567899999999999999983   43 3365554321    0234567778889999999996221000 


Q ss_pred             ceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCe
Q 019117          214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI  292 (346)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  292 (346)
                                      ......+ ......+|++-. ..+||+|+.+|.||+||-- ++.        ....+++-..+|
T Consensus       568 ----------------~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~--------AKT~lp~lG~pI  621 (794)
T PF08553_consen  568 ----------------DSQSKQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR--------AKTALPGLGDPI  621 (794)
T ss_pred             ----------------ecccccc-ccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh--------hhhcCCCCCCCe
Confidence                            0001111 233446677666 6799999999999999943 221        334455556899


Q ss_pred             eEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          293 WFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      .+|..+.||  +++++.+. ..|.+++.
T Consensus       622 ~~iDvt~DG--kwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADG--KWILATCK-TYLLLIDT  646 (794)
T ss_pred             eEEEecCCC--cEEEEeec-ceEEEEEE
Confidence            999999999  56665554 46777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.013  Score=45.68  Aligned_cols=247  Identities=18%  Similarity=0.184  Sum_probs=128.6

Q ss_pred             EEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-----CCeE
Q 019117           38 AVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----NGII  110 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----dg~i  110 (346)
                      .|+|+|..   ..-++.+-.-+  ..++|....+....+...    .+...+.- -.|+|||. +|...-+     .|.|
T Consensus        72 gi~~~p~~---~ravafARrPGtf~~vfD~~~~~~pv~~~s~----~~RHfyGH-Gvfs~dG~-~LYATEndfd~~rGVi  142 (366)
T COG3490          72 GIAFHPAL---PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ----EGRHFYGH-GVFSPDGR-LLYATENDFDPNRGVI  142 (366)
T ss_pred             CeecCCCC---cceEEEEecCCceEEEECCCCCcCcEEEecc----cCceeecc-cccCCCCc-EEEeecCCCCCCCceE
Confidence            57888833   35566666555  889998887776665532    11222222 13669998 7776543     3789


Q ss_pred             EEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeC-------CC-----------CEEEEecCCCeeEEEeccc-
Q 019117          111 RVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASK-------DE-----------SVRLWNVQTGICILIFAGA-  170 (346)
Q Consensus       111 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------d~-----------~i~iwd~~~~~~~~~~~~~-  170 (346)
                      -|||.+.+ +.+..+..|.-.-..+.+.+ ++..++.+..       -|           ++.+.|..+|+.+.+.... 
T Consensus       143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~  221 (366)
T COG3490         143 GVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA  221 (366)
T ss_pred             EEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence            99998754 45667788887888999999 7777776532       01           1223333344443332211 


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      ..+.-.|+.++..+ ++..++-+-..|.-.  |+..   .+.      -.....+.+....+......-.+.|-+++.+ 
T Consensus       222 ~l~~lSiRHld~g~-dgtvwfgcQy~G~~~--d~pp---Lvg------~~~~g~~l~~~~~pee~~~~~anYigsiA~n~  289 (366)
T COG3490         222 SLRQLSIRHLDIGR-DGTVWFGCQYRGPRN--DLPP---LVG------HFRKGEPLEFLDLPEEQTAAFANYIGSIAANR  289 (366)
T ss_pred             hhhhcceeeeeeCC-CCcEEEEEEeeCCCc--cCCc---cee------eccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence            02334566777665 555444443222100  0000   000      0000000011111111111223456667766 


Q ss_pred             --CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          250 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       250 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                        +-..+++-..+...+||..++..         +......  ....++-...+    +++.+.+|.+.++.-.
T Consensus       290 ~~glV~lTSP~GN~~vi~da~tG~v---------v~~a~l~--daaGva~~~~g----f~vssg~G~~~~~s~~  348 (366)
T COG3490         290 RDGLVALTSPRGNRAVIWDAATGAV---------VSEAALP--DAAGVAAAKGG----FAVSSGQGRIIFYSRA  348 (366)
T ss_pred             cCCeEEEecCCCCeEEEEEcCCCcE---------Eeccccc--ccccceeccCc----eEEecCCceEEecccc
Confidence              34556666678899999999872         2211111  12223333333    6666778888887433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.00018  Score=61.54  Aligned_cols=91  Identities=13%  Similarity=0.191  Sum_probs=72.7

Q ss_pred             ccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCee-EEEEeecCCcceEEEEcCCCcEE
Q 019117          240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW-FIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       240 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      +..|.-+.|+  -+++|.+..+|.|.+..++ .+         .+..++.|...++ +++|.|||  ++||.|-.||+|+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~q---------Rlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~I~   87 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQ---------RLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGTIR   87 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cc---------eeEeccCCCCccceeeeecCCC--CEEEEEecCCeEE
Confidence            3456677787  5689999999999999988 43         4666776666777 99999999  8999999999999


Q ss_pred             EEEcCCCCccee--eeeeeeEEEEEecC
Q 019117          317 VWELQSSPPVLI--ARLICFSLHVKYNP  342 (346)
Q Consensus       317 iwd~~~~~~~~~--~~~~~~~~~~~~sp  342 (346)
                      +-|++++..+..  +.....+.++-|+|
T Consensus        88 L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEccCCCceeccccccccchheeeccc
Confidence            999999987766  45555677777764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.69  E-value=0.019  Score=46.41  Aligned_cols=152  Identities=14%  Similarity=0.094  Sum_probs=90.8

Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec-------
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA-------  168 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------  168 (346)
                      .++ .|+.|..+| +.+++.........+. +...|..+...| +-+.+++-+ |+.+.++++..-.......       
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            455 899999888 8999983332222222 233499999999 666666665 4999999987554433110       


Q ss_pred             ----ccCCCCcceEEEE-ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          169 ----GAGGHRNEVLSVD-FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       169 ----~~~~~~~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                          ........+...+ -....+...+.......|.+|..........                  .....+ .-+..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------~~~ke~-~lp~~~  141 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------KLLKEI-SLPDPP  141 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------------ceeEEE-EcCCCc
Confidence                0001233444444 1112344444455566999988876211000                  112222 234778


Q ss_pred             EEEEecCCEEEEEeecCeEEEEcCCCCCC
Q 019117          244 DCNRWLGDFILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       244 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  272 (346)
                      .++.|.++.++.|..++ ..+.|+.++..
T Consensus       142 ~~i~~~~~~i~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  142 SSIAFLGNKICVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             EEEEEeCCEEEEEeCCc-eEEEecCCCCc
Confidence            89999988888887654 77889987653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.68  E-value=0.011  Score=52.93  Aligned_cols=192  Identities=10%  Similarity=0.092  Sum_probs=95.0

Q ss_pred             CCCCcEEEEeecC------CeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCC
Q 019117           95 VDGIPFLVAGGIN------GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTG  161 (346)
Q Consensus        95 ~~~~~~l~~~~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~  161 (346)
                      .++. +++.|+.+      ..+..||..+.+-  +..+....... +++..  ++.+.+.||.++     .+..||..+.
T Consensus       302 l~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        302 VDNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             ECCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCC
Confidence            3555 77777743      3477888776542  22222111122 22222  567778888764     4788998765


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----------------------eEEEEEccccceeeeeceeec
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----------------------TVKIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~  218 (346)
                      +-.. +.......... +++..  ++.+.+.||.++                       .+..||..+.+        |.
T Consensus       378 ~W~~-~~~mp~~r~~~-~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--------W~  445 (557)
T PHA02713        378 KWKM-LPDMPIALSSY-GMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--------WE  445 (557)
T ss_pred             eEEE-CCCCCcccccc-cEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--------Ee
Confidence            4322 21100111111 22222  677777777653                       35556665521        11


Q ss_pred             CCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec------CeEEEEcCCC-CCCCCCCccccccccccCCCcC
Q 019117          219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD------NEIVLWEPKM-KEQSPGEGTADILQKYPVPECD  291 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (346)
                      ..+             .+.........+.+.+...+.|+.+      ..+..||..+ .+       ...+..++.+...
T Consensus       446 ~v~-------------~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~m~~~r~~  505 (557)
T PHA02713        446 TLP-------------NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITTTESRLSA  505 (557)
T ss_pred             ecC-------------CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccccCccccc
Confidence            000             0100001111223336666667654      2467888887 33       1223333322222


Q ss_pred             eeEEEEeecCCcceEEEEcCCC--cEEEEEcCCCCcc
Q 019117          292 IWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPV  326 (346)
Q Consensus       292 v~~~~~s~~~~~~~l~~~~~dg--~i~iwd~~~~~~~  326 (346)
                      ...+.  -++  .+.++|+.||  .+..||..+.+-.
T Consensus       506 ~~~~~--~~~--~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        506 LHTIL--HDN--TIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ceeEE--ECC--EEEEEeeecceeehhhcCccccccc
Confidence            22222  245  6888898888  7888998887643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.67  E-value=0.0029  Score=53.97  Aligned_cols=194  Identities=13%  Similarity=0.086  Sum_probs=101.6

Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-eCC---CCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      .+.+-|.+ +.....+......+..-+|+| ++..++-. -..   ..+.++|+.+++......    ..+.-..-+|+|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fsp  247 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSP  247 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCC
Confidence            44444443 444445544556677788998 55543322 222   358999999887766654    344455677999


Q ss_pred             CCCcEEEEEecCCeEEE--EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEe-e
Q 019117          185 SDIYRIASCGMDNTVKI--WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKS-V  258 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~-~  258 (346)
                      ++..++++...||...+  .|+....                        ...+. +...+. .=.|+  |+.++-.+ .
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~------------------------~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr  302 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKN------------------------LPRLT-NGFGINTSPSWSPDGSKIVFTSDR  302 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCc------------------------ceecc-cCCccccCccCCCCCCEEEEEeCC
Confidence            56666677777886555  4555521                        11111 111111 11222  66655544 4


Q ss_pred             cCe--EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCc--EEEEEcCCCCcceeeeeee
Q 019117          259 DNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGK--IFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       259 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~  333 (346)
                      .|.  |.+.+++....          ..+......-..-.|+|||.  +++..+ .+|.  |.+.|+.++..........
T Consensus       303 ~G~p~I~~~~~~g~~~----------~riT~~~~~~~~p~~SpdG~--~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~  370 (425)
T COG0823         303 GGRPQIYLYDLEGSQV----------TRLTFSGGGNSNPVWSPDGD--KIVFESSSGGQWDIDKNDLASGGKIRILTSTY  370 (425)
T ss_pred             CCCcceEEECCCCCce----------eEeeccCCCCcCccCCCCCC--EEEEEeccCCceeeEEeccCCCCcEEEccccc
Confidence            555  45555555431          22221111222557999994  555444 3454  7777777665333333333


Q ss_pred             eEEEEEecCCCC
Q 019117          334 FSLHVKYNPQSV  345 (346)
Q Consensus       334 ~~~~~~~spdg~  345 (346)
                      ....-.|.|+|+
T Consensus       371 ~~e~ps~~~ng~  382 (425)
T COG0823         371 LNESPSWAPNGR  382 (425)
T ss_pred             cCCCCCcCCCCc
Confidence            333456666665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.0046  Score=53.00  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=77.4

Q ss_pred             CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE-Ecc
Q 019117          127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW-SMK  205 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~~  205 (346)
                      .......+.++| +++.++.++ ||.-.++.....+...        .+.-..++|.+ ++. +++-...++|.++ ++.
T Consensus        31 ~~~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~k~--------~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   31 CEIYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRNKA--------FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             -SS--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEEEE--------EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTE
T ss_pred             CCcCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcccc--------cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCc
Confidence            444578999999 888888755 6777788744333322        23445688986 555 6666668889996 332


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                      .                        .....+.. +..+..+.. |.+|...+.+ .|.+||..+++         .+.++
T Consensus        99 ~------------------------~~~k~i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~---------~i~~i  142 (443)
T PF04053_consen   99 N------------------------EVVKSIKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK---------LIRRI  142 (443)
T ss_dssp             E-------------------------TT------SS-EEEEE--SSSEEEEETT-EEEEE-TTT-----------EEEEE
T ss_pred             c------------------------ccceEEcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcc---------eeeEE
Confidence            2                        01011111 111222222 6666666544 89999999887         66666


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ...  +|..+.|++++  .+++..+.+ .+.|++....
T Consensus       143 ~v~--~vk~V~Ws~~g--~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  143 DVS--AVKYVIWSDDG--ELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             SS---E-EEEEE-TTS--SEEEEE-S--SEEEEEE-HH
T ss_pred             ecC--CCcEEEEECCC--CEEEEEeCC-eEEEEEecch
Confidence            643  48899999998  577777655 6778765544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.62  E-value=0.017  Score=51.59  Aligned_cols=231  Identities=11%  Similarity=0.073  Sum_probs=118.7

Q ss_pred             CccEEEEEcCCc-------EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------CeEEEEE
Q 019117           48 YFNVFATVGGNR-------VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GIIRVID  114 (346)
Q Consensus        48 ~~~~la~~~~~~-------v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd  114 (346)
                      .+.+++.|+..+       +..||..++....... ..   ......+++.   .+|. +.++|+.|      .++..||
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-m~---~~r~~~~~~~---~~~~-lYv~GG~~~~~~~l~~ve~YD  355 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-MP---SPRCRVGVAV---LNGK-LYVVGGYDSGSDRLSSVERYD  355 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCC-CC---cccccccEEE---ECCE-EEEEccccCCCcccceEEEec
Confidence            356777777651       7788877664322211 11   1222222333   3455 88888888      3577888


Q ss_pred             ccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCCCC-----EEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          115 VSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDES-----VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       115 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      ..+.+-..  .+....... .++..  ++.+.+.|+.||.     +-.||..+.+--..-.    ......+.....-++
T Consensus       356 ~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----m~~~r~~~gv~~~~g  428 (571)
T KOG4441|consen  356 PRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----MLTRRSGHGVAVLGG  428 (571)
T ss_pred             CCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC----CCcceeeeEEEEECC
Confidence            77665222  222121222 22222  6788899998864     6777776554322211    111222222222267


Q ss_pred             cEEEEEecCC------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecC-
Q 019117          188 YRIASCGMDN------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN-  260 (346)
Q Consensus       188 ~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~-  260 (346)
                      .+.+.||.++      ++..||..+..-...                     ..+..-.........++.+.+.||.|+ 
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---------------------~~M~~~R~~~g~a~~~~~iYvvGG~~~~  487 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLI---------------------APMNTRRSGFGVAVLNGKIYVVGGFDGT  487 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeec---------------------CCcccccccceEEEECCEEEEECCccCC
Confidence            8888888654      566777776321111                     011111111123333467778888776 


Q ss_pred             ----eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC-----cEEEEEcCCCCc
Q 019117          261 ----EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-----KIFVWELQSSPP  325 (346)
Q Consensus       261 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  325 (346)
                          +|..||..+.+-       ..+.........+   .....+. .+.++|+.||     +|..||..+.+-
T Consensus       488 ~~~~~VE~ydp~~~~W-------~~v~~m~~~rs~~---g~~~~~~-~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  488 SALSSVERYDPETNQW-------TMVAPMTSPRSAV---GVVVLGG-KLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             CccceEEEEcCCCCce-------eEcccCccccccc---cEEEECC-EEEEEecccCccccceeEEcCCCCCce
Confidence                377788887652       1222222222222   2222222 5777888776     577787777653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.046  Score=46.43  Aligned_cols=219  Identities=13%  Similarity=0.071  Sum_probs=124.3

Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                      ..+++....++-.....+...+............-...-..++.++.+.+.++....+..|.+.|..+.+.+....    
T Consensus        38 ~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~----  113 (381)
T COG3391          38 VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP----  113 (381)
T ss_pred             EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee----
Confidence            3367752333333333555555442222222221113345778888455566777677999999988777777765    


Q ss_pred             CCcceEEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  249 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  249 (346)
                      -......++++| ++..+..+..   ++++.+.|..+...                       ......-..+ ..++++
T Consensus       114 vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~-----------------------~~~~~vG~~P-~~~a~~  168 (381)
T COG3391         114 VGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV-----------------------TATIPVGNTP-TGVAVD  168 (381)
T ss_pred             eccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE-----------------------EEEEecCCCc-ceEEEC
Confidence            333778899999 5544444443   67888888877322                       2222111122 556665


Q ss_pred             --CCEEEEE-eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC--CcEEEEEcCCCC
Q 019117          250 --GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--GKIFVWELQSSP  324 (346)
Q Consensus       250 --~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d--g~i~iwd~~~~~  324 (346)
                        |+.++.. ..++.|.+.|........ ......+    ........+.++|++.. ..++...+  +.+...|..++.
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~----~~~~~P~~i~v~~~g~~-~yV~~~~~~~~~v~~id~~~~~  242 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV----GVGTGPAGIAVDPDGNR-VYVANDGSGSNNVLKIDTATGN  242 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc----ccCCCCceEEECCCCCE-EEEEeccCCCceEEEEeCCCce
Confidence              6655444 478999999977664221 0000011    11224466889999952 33333333  689999998876


Q ss_pred             ccee-eeeee-eEEEEEecCCCCC
Q 019117          325 PVLI-ARLIC-FSLHVKYNPQSVY  346 (346)
Q Consensus       325 ~~~~-~~~~~-~~~~~~~spdg~~  346 (346)
                      .... ..... ....+..+|+|++
T Consensus       243 v~~~~~~~~~~~~~~v~~~p~g~~  266 (381)
T COG3391         243 VTATDLPVGSGAPRGVAVDPAGKA  266 (381)
T ss_pred             EEEeccccccCCCCceeECCCCCE
Confidence            5443 22222 3456788888863

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.49  E-value=0.0041  Score=52.49  Aligned_cols=141  Identities=14%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceee--eecee---------ecCCCC---------CCCCccceeceEE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV--EKSFT---------WTDLPS---------KFPTKYVQFPVFI  235 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~---------~~~~~~---------~~~~~~~~~~~~~  235 (346)
                      .|+.+.|.+ +...|+.+...|.|.+|.....+...  .....         ....+.         ....+..-.|...
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            578899998 77778999999999999887744332  00000         000000         0111222345566


Q ss_pred             EeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccc--c-cCCCcCeeEEEEee---cCC---cce
Q 019117          236 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK--Y-PVPECDIWFIKFSC---DFH---YNA  305 (346)
Q Consensus       236 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~~~s~---~~~---~~~  305 (346)
                      +....+.|++++.+ =.+++.|..+|.+.|.|++........    .+..  . ......++++.|+.   +++   .-.
T Consensus        82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~----~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNE----NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEE----EGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeec----cccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            66678999999998 679999999999999999876532111    1111  1 11345688888874   221   147


Q ss_pred             EEEEcCCCcEEEEEcC
Q 019117          306 AAIGNREGKIFVWELQ  321 (346)
Q Consensus       306 l~~~~~dg~i~iwd~~  321 (346)
                      |++|...|.+.+|.+.
T Consensus       158 L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEe
Confidence            8889999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.01  Score=50.33  Aligned_cols=139  Identities=13%  Similarity=0.155  Sum_probs=89.3

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCC------CceEEEeeCCCCEEEEecCCCee--EEEecccC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK------PSLVVSASKDESVRLWNVQTGIC--ILIFAGAG  171 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~  171 (346)
                      +|.++.....++-.|++.|+.+...+-+.+ |+.+.+.|+.      ...-+.|-.|..|+-||++-...  +..-+   
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q---  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ---  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee---
Confidence            455566667788899999999998887766 7888888731      12234466678899999983322  11111   


Q ss_pred             CC----CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117          172 GH----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  247 (346)
Q Consensus       172 ~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  247 (346)
                      +|    .....|.+-.  +..+++.|+.+|-|++||--.                       ......+++-...|..+.
T Consensus       424 ~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~-----------------------~~AKTAlPgLG~~I~hVd  478 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG-----------------------RRAKTALPGLGDAIKHVD  478 (644)
T ss_pred             ccccccccccceeeec--CCceEEEeecCCcEEeehhhh-----------------------hhhhhcccccCCceeeEE
Confidence            22    2345566655  456799999999999999743                       112233445566677666


Q ss_pred             ec--CCEEEEEeecCeEEEEcCC
Q 019117          248 WL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       248 ~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      ..  |++++..+ +..+.+-++.
T Consensus       479 vtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  479 VTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eeccCcEEEEec-ccEEEEEEEe
Confidence            65  77666554 4455555543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.41  E-value=0.026  Score=47.46  Aligned_cols=184  Identities=13%  Similarity=0.124  Sum_probs=96.2

Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC-----CC--------
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GH--------  173 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~--------  173 (346)
                      .+.+.++|+.+++....... ...+....|+| +++.++... ++.|.+++..+++..+.-....     |-        
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            46799999998775544443 66788999999 788888776 5789999988775443222110     00        


Q ss_pred             -CcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          174 -RNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       174 -~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                       -+.-..+.|+| +++.|+... .+..|..+.+........                 ..+         .+..+.+-  
T Consensus        99 v~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~-----------------~yp---------~~~~~~YPk~  151 (353)
T PF00930_consen   99 VFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS-----------------QYP---------EVESIRYPKA  151 (353)
T ss_dssp             TSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE-----------------SS----------EEEEEE--BT
T ss_pred             ccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc-----------------cCC---------cccccccCCC
Confidence             11235688999 666666554 445566665554211000                 000         11122221  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE-EcC---CCcEEEEEcCCCCc
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-GNR---EGKIFVWELQSSPP  325 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~-~~~---dg~i~iwd~~~~~~  325 (346)
                      |.-..    .-.+.|+|+.+++....    .....+.....-+..+.|+++++ .+++. ...   .-.+.+.|..++..
T Consensus       152 G~~np----~v~l~v~~~~~~~~~~~----~~~~~~~~~~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  152 GDPNP----RVSLFVVDLASGKTTEL----DPPNSLNPQDYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             TS-------EEEEEEEESSSTCCCEE-------HHHHTSSEEEEEEEEEETTE-EEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             CCcCC----ceEEEEEECCCCcEEEe----eeccccCCCccCcccceecCCCc-EEEEEEcccCCCEEEEEEEECCCCce
Confidence            22221    12467788877763210    01111223345688999999984 13332 222   22567778877765


Q ss_pred             ceee
Q 019117          326 VLIA  329 (346)
Q Consensus       326 ~~~~  329 (346)
                      ....
T Consensus       223 ~~~~  226 (353)
T PF00930_consen  223 RVVL  226 (353)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            4433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.41  E-value=0.07  Score=46.08  Aligned_cols=243  Identities=11%  Similarity=0.082  Sum_probs=122.0

Q ss_pred             EEEEEEeecCCCccEEEEEc----CCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---
Q 019117           37 YAVVFNFIDSRYFNVFATVG----GNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---  107 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~----~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---  107 (346)
                      ....+||    +++++|.+-    ++.  ++++|+.+++.+...-.      ......+.|.  ++++.++.+...+   
T Consensus       127 ~~~~~Sp----dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~------~~~~~~~~W~--~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  127 GGFSVSP----DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE------NPKFSSVSWS--DDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEEETT----TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE------EEESEEEEEC--TTSSEEEEEECSTTTS
T ss_pred             eeeeECC----CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc------ccccceEEEe--CCCCEEEEEEeCcccc
Confidence            3566777    778777552    222  99999999865543211      1111226666  8887445554322   


Q ss_pred             -------CeEEEEEccCccee--eeeccCCCc--eEEEEEeCCCCceEEE-eeCC---CCEEEEecCCC----eeEEEec
Q 019117          108 -------GIIRVIDVSNEKLH--KSFVGHGDS--INEIRTQPLKPSLVVS-ASKD---ESVRLWNVQTG----ICILIFA  168 (346)
Q Consensus       108 -------g~i~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s-~~~d---~~i~iwd~~~~----~~~~~~~  168 (346)
                             ..|..|.+.+....  ..+......  ...+..++ ++++++. ....   ..+.+.++..+    .....+.
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~  273 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS  273 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence                   24777887766432  334433332  56888888 6666554 3332   34777788764    2333333


Q ss_pred             ccCCCCcce-EEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--c
Q 019117          169 GAGGHRNEV-LSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--Y  242 (346)
Q Consensus       169 ~~~~~~~~v-~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  242 (346)
                         .....+ ..+...  ++.+++....   .+.|...++.....                    ......+..+..  .
T Consensus       274 ---~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~--------------------~~~~~~l~~~~~~~~  328 (414)
T PF02897_consen  274 ---PREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP--------------------AEWWTVLIPEDEDVS  328 (414)
T ss_dssp             ---ESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG--------------------GGEEEEEE--SSSEE
T ss_pred             ---CCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc--------------------ccceeEEcCCCCcee
Confidence               133333 334443  4545544432   35666667766321                    001113444444  4


Q ss_pred             eEEEEecCCEEEEEee-c--CeEEEEcCC-CCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEc--CCCcE
Q 019117          243 VDCNRWLGDFILSKSV-D--NEIVLWEPK-MKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGN--REGKI  315 (346)
Q Consensus       243 i~~~~~~~~~l~~~~~-d--~~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~--~dg~i  315 (346)
                      +..+...+++|+.... +  ..|+++++. ...          ...... ..+.|..+...+++..-++...|  .-+.+
T Consensus       329 l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~----------~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~  398 (414)
T PF02897_consen  329 LEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE----------SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTV  398 (414)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEETT-TEE----------EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred             EEEEEEECCEEEEEEEECCccEEEEEECCCCcE----------EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence            5566655665555543 3  358889988 432          222222 22345555545555422233333  34578


Q ss_pred             EEEEcCCCCcce
Q 019117          316 FVWELQSSPPVL  327 (346)
Q Consensus       316 ~iwd~~~~~~~~  327 (346)
                      +.||+.+++...
T Consensus       399 y~~d~~t~~~~~  410 (414)
T PF02897_consen  399 YRYDLATGELTL  410 (414)
T ss_dssp             EEEETTTTCEEE
T ss_pred             EEEECCCCCEEE
Confidence            999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0012  Score=60.37  Aligned_cols=103  Identities=13%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             EEEEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          100 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      .++.|+..|.+-..|+... .+...-..-.++|++++|+. ++..++.|-.+|.|.+||+..++.++.+.........|.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            7889999999999987653 11122223467999999998 899999999999999999999999988874322223333


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      .+.+.. ++..++++...|.  +|.+.-
T Consensus       180 ~v~~t~-~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  180 FVGRTS-QNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             EEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence            444443 5557888887776  565543

>PHA02713 hypothetical protein; Provisional

Probab=97.39  E-value=0.031  Score=50.02  Aligned_cols=188  Identities=11%  Similarity=0.040  Sum_probs=93.0

Q ss_pred             CccEEEEEcCC-------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC-----eEEEEEc
Q 019117           48 YFNVFATVGGN-------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-----IIRVIDV  115 (346)
Q Consensus        48 ~~~~la~~~~~-------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~  115 (346)
                      ++.+++.|+.+       .+..||..++.- ..+....   ....-.+++ .  .+|+ +.+.|+.++     .+..||.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~---~~R~~~~~~-~--~~g~-IYviGG~~~~~~~~sve~Ydp  374 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMI---KNRCRFSLA-V--IDDT-IYAIGGQNGTNVERTIECYTM  374 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCc---chhhceeEE-E--ECCE-EEEECCcCCCCCCceEEEEEC
Confidence            35677777742       166778665532 2222110   111111121 2  4566 777777653     4888998


Q ss_pred             cCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCC-----------------------CEEEEecCCCeeEEEeccc
Q 019117          116 SNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----------------------SVRLWNVQTGICILIFAGA  170 (346)
Q Consensus       116 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~~~~~~~~~~  170 (346)
                      .+.+  .+..+.........+..   ++.+.+.|+.++                       .+..||..+.+-...-.. 
T Consensus       375 ~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-  450 (557)
T PHA02713        375 GDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-  450 (557)
T ss_pred             CCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-
Confidence            7654  22222221112222222   567777777653                       467788776543221110 


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCC------eEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                       .....-.+++..  ++.+.+.|+.++      .+..||..+ .+-                     ..+..+.......
T Consensus       451 -~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W---------------------~~~~~m~~~r~~~  506 (557)
T PHA02713        451 -WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW---------------------ELITTTESRLSAL  506 (557)
T ss_pred             -CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCe---------------------eEccccCcccccc
Confidence             011111123333  567777776542      356777765 221                     1111222222223


Q ss_pred             EEEEecCCEEEEEeecC--eEEEEcCCCCC
Q 019117          244 DCNRWLGDFILSKSVDN--EIVLWEPKMKE  271 (346)
Q Consensus       244 ~~~~~~~~~l~~~~~d~--~i~iwd~~~~~  271 (346)
                      ..+...+.+.++|+.++  .+..||+.+.+
T Consensus       507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eeEEECCEEEEEeeecceeehhhcCccccc
Confidence            33444578888998888  67777777664

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.069  Score=45.38  Aligned_cols=201  Identities=16%  Similarity=0.078  Sum_probs=120.6

Q ss_pred             EEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-e--CCCCEEEEecCCCeeEEEec
Q 019117           92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S--KDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        92 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~--~d~~i~iwd~~~~~~~~~~~  168 (346)
                      ..++.+....+....++.|.+.|..+.+.......-. ....++++| ++..+..+ .  .++++.+.|-.+.+.+....
T Consensus        80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~  157 (381)
T COG3391          80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIP  157 (381)
T ss_pred             eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence            3447776466666667899999988777766655333 567899999 55444444 4  37899999999888888854


Q ss_pred             ccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-ceEEE
Q 019117          169 GAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCN  246 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~  246 (346)
                          -......++++| ++. .+++-..++.|.+.|........ ..                 .......... ....+
T Consensus       158 ----vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-----------------~~~~~~~~~~P~~i~v  214 (381)
T COG3391         158 ----VGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-----------------VGSLVGVGTGPAGIAV  214 (381)
T ss_pred             ----cCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-cc-----------------cccccccCCCCceEEE
Confidence                222228999999 666 44455578899999976622100 00                 0000111111 11222


Q ss_pred             EecCCEEEEEeec---CeEEEEcCCCCCCCCCCcccccccc-ccCCCcCeeEEEEeecCCcceEEEE-cCCCcEEEEEcC
Q 019117          247 RWLGDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQ  321 (346)
Q Consensus       247 ~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~iwd~~  321 (346)
                      ..++.++.+....   +.+...|..++..         ... ..........+.++|++.  .+.+. +..+.+.+-|..
T Consensus       215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v---------~~~~~~~~~~~~~~v~~~p~g~--~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         215 DPDGNRVYVANDGSGSNNVLKIDTATGNV---------TATDLPVGSGAPRGVAVDPAGK--AAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             CCCCCEEEEEeccCCCceEEEEeCCCceE---------EEeccccccCCCCceeECCCCC--EEEEEecCCCeEEEEeCC
Confidence            2236644444332   5888888887652         111 111111345678999994  45444 445789999988


Q ss_pred             CCCccee
Q 019117          322 SSPPVLI  328 (346)
Q Consensus       322 ~~~~~~~  328 (346)
                      +......
T Consensus       284 ~~~v~~~  290 (381)
T COG3391         284 TDRVVKT  290 (381)
T ss_pred             CCceeee
Confidence            8765443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.34  E-value=0.1  Score=46.43  Aligned_cols=152  Identities=15%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEccCcceeee
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKS  123 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~  123 (346)
                      .+++...++.+.-+|..+|+.+....... ......+.+.-..  .++  .++.+.      .+|.|..+|.++|+.+..
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v--~~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGD-YKAGYTITAAPLV--VKG--KVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeeccccc-ccccccccCCcEE--ECC--EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            34443334448999988888876554210 0000111111111  134  344443      268999999999988765


Q ss_pred             eccCCC-------------------------------ceE-EEEEeCCCCceEEEeeC-----CC-----------CEEE
Q 019117          124 FVGHGD-------------------------------SIN-EIRTQPLKPSLVVSASK-----DE-----------SVRL  155 (346)
Q Consensus       124 ~~~~~~-------------------------------~v~-~~~~~~~~~~~l~s~~~-----d~-----------~i~i  155 (346)
                      +..-..                               .+. .+++.| ...+++.+..     ++           .|.-
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA  275 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA  275 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence            532110                               111 235555 4445554431     12           5777


Q ss_pred             EecCCCeeEEEecccCCCC-------cceEEEEecCCCC---cEEEEEecCCeEEEEEccccce
Q 019117          156 WNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       156 wd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                      .|+++|+....++... |.       ....-+.+.. ++   ..++.+..+|.+.+.|-++++.
T Consensus       276 ld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       276 RDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EccccCCEEEeeeCCC-CCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence            8999999988887421 21       1111222322 44   4788999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.25  E-value=0.074  Score=45.61  Aligned_cols=114  Identities=15%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             eEEEEEEEcCCCCcEEEEee--cC-CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCE--EEEecCC
Q 019117           86 FYTVSWACNVDGIPFLVAGG--IN-GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV--RLWNVQT  160 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i--~iwd~~~  160 (346)
                      +..-.|+  |+++.+....-  .. ..+.++++++++....+. -.+.-..-+|+|++..++++...||..  .+.|+..
T Consensus       195 ~~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         195 ILTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             eeccccC--cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            3334555  77773322222  22 358999999887554443 233345678999555556666777764  5557766


Q ss_pred             CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ++ +..+..   ..+.-..=.|+|++..++++.+..|.-.||-+..
T Consensus       272 ~~-~~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~  313 (425)
T COG0823         272 KN-LPRLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL  313 (425)
T ss_pred             Cc-ceeccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence            65 333442   2222235668995556666666677655554443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.24  E-value=0.11  Score=44.61  Aligned_cols=32  Identities=13%  Similarity=0.058  Sum_probs=27.1

Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      .+++..+++|| ++++++.-..+|.+.+.+..-
T Consensus       216 ~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  216 DGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             CCCeEEEEECC-CCCEEEEEECCCCEEEEECcc
Confidence            46899999999 889999989999998876544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.22  E-value=0.1  Score=43.96  Aligned_cols=257  Identities=11%  Similarity=0.044  Sum_probs=103.5

Q ss_pred             CccEEEEEcCC--cEEEEEeccCceeeeEeeeecC--CC--ccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEc
Q 019117           48 YFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDE--DK--EESFYTVSWACNVDGIPFLVAGG------INGIIRVIDV  115 (346)
Q Consensus        48 ~~~~la~~~~~--~v~i~~~~~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~  115 (346)
                      ..++|+..+-.  +|.|+|..+......+......  ..  .+-..--...+-|+|. +++++-      .-|-+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence            45677776643  3999998854432222221111  01  1111112233348887 777752      2356888888


Q ss_pred             cCcceeeeeccC---CCceEEEEEeCCCCceEEEee--------------------CCCCEEEEecCCCeeEEEecccCC
Q 019117          116 SNEKLHKSFVGH---GDSINEIRTQPLKPSLVVSAS--------------------KDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus       116 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                      ++.+........   ...-.++-|.| ..+.++|..                    ...++.+||+.+.+.++++.... 
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~-  242 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE-  242 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T-
T ss_pred             ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC-
Confidence            777766655432   33456788888 777777754                    23579999999999999997421 


Q ss_pred             CCcceEEEEec--CCCCcEEEEEecCCeEEEEEc-cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117          173 HRNEVLSVDFH--PSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  249 (346)
Q Consensus       173 ~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  249 (346)
                      ....+..+.|.  |....-++.+...++|..|-- ....-..++.+.....+..  .......+..+..-+.-|+.|..+
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~--~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE--GWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE----SS---GGGGGG-EE------EEE-
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC--cccccccccccccCCCceEeEEEc
Confidence            12345566665  322333444444555554433 3322222222111100000  000000001111124457777777


Q ss_pred             --CCEEEEEee-cCeEEEEcCCCCCCCCCCcccc---ccc-----ccc--CCCcCeeEEEEeecCCcceEEEEc
Q 019117          250 --GDFILSKSV-DNEIVLWEPKMKEQSPGEGTAD---ILQ-----KYP--VPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       250 --~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~---~~~-----~~~--~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                        .++|..+.. .|.|+.||+.............   .+.     ...  .-.+...-+..|.||+ ++.+|.|
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk-RlYvTnS  393 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK-RLYVTNS  393 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS-EEEEE--
T ss_pred             cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe-EEEEEee
Confidence              677777665 8999999998765321111000   000     000  0123456788999996 4445544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.22  E-value=0.067  Score=41.96  Aligned_cols=201  Identities=14%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCC--eEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      |+.....-.+.+..+|. ++-+.+.-|  .|+.+|+.+++......-. .-.-..++..  ++.+..-.-.++...+||.
T Consensus        41 Hd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   41 HDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             --TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             CCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence            44444444444446776 777777666  7999999999876554422 2233455555  3455555667899999999


Q ss_pred             CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      .+.+.+..+.    ..+.=..++.   ++..|+.+.....+.++|..+++......+.....+        ...+..++.
T Consensus       118 ~tl~~~~~~~----y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p--------v~~LNELE~  182 (264)
T PF05096_consen  118 NTLKKIGTFP----YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP--------VSNLNELEY  182 (264)
T ss_dssp             TTTEEEEEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-----------EEEEEE
T ss_pred             ccceEEEEEe----cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE--------CCCcEeEEE
Confidence            9999999987    4556667773   344455555567899999887554332222211110        112334444


Q ss_pred             cccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc------cCCCcCeeEEEEeecCCcceEEEEc
Q 019117          239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------PVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       239 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      ..+.|.+=.|..+         .|...|..+++..............      .....-...|++.|..+ ++++||=
T Consensus       183 i~G~IyANVW~td---------~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~-~l~vTGK  250 (264)
T PF05096_consen  183 INGKIYANVWQTD---------RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD-RLFVTGK  250 (264)
T ss_dssp             ETTEEEEEETTSS---------EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT-EEEEEET
T ss_pred             EcCEEEEEeCCCC---------eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC-EEEEEeC
Confidence            5555555555433         3444444444321100000011111      11135678999999886 5777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.21  E-value=0.086  Score=43.01  Aligned_cols=169  Identities=9%  Similarity=-0.043  Sum_probs=93.5

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------C---CeEEEEEcc-Ccc
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------N---GIIRVIDVS-NEK  119 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------d---g~i~iwd~~-~~~  119 (346)
                      .+|+++ ..++.+++..++.....+............+...+.  |+|. +-++...      +   ..=.+|-+. .+.
T Consensus        78 g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~--pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~  153 (307)
T COG3386          78 GRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD--PDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGG  153 (307)
T ss_pred             CeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEc--CCCC-EEEeCCCccccCccccCCcceEEEEcCCCC
Confidence            344444 566778887655553333322222222334445544  8887 4333322      0   111344444 466


Q ss_pred             eeeeeccCCCceEEEEEeCCCCceEEE-eeCCCCEEEEecCC--C----eeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          120 LHKSFVGHGDSINEIRTQPLKPSLVVS-ASKDESVRLWNVQT--G----ICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       120 ~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~--~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      .++.+..+-..-+.|+|+| +++.|+. =+..+.|.-|++..  +    +......  ....+..-.++... ++.+.++
T Consensus       154 ~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDa-dG~lw~~  229 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDA-DGNLWVA  229 (307)
T ss_pred             EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeC-CCCEEEe
Confidence            6666666666678999999 6655554 45557888887752  1    1111111  12446666777876 7776655


Q ss_pred             EecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC
Q 019117          193 CGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG  250 (346)
Q Consensus       193 ~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  250 (346)
                      +..+| .|.+|+...                        ..+..+......+++++|-|
T Consensus       230 a~~~g~~v~~~~pdG------------------------~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         230 AVWGGGRVVRFNPDG------------------------KLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             cccCCceEEEECCCC------------------------cEEEEEECCCCCCccceEeC
Confidence            55544 899998874                        23344444446677888863

>PHA03098 kelch-like protein; Provisional

Probab=97.21  E-value=0.052  Score=48.61  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=52.0

Q ss_pred             CCCCcEEEEeecCC------eEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCC
Q 019117           95 VDGIPFLVAGGING------IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTG  161 (346)
Q Consensus        95 ~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~  161 (346)
                      .++. +++.|+.++      .+..||..+.+-..  .+.........+.+   ++.+++.||.+     ..+..||..+.
T Consensus       293 ~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        293 LNNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             ECCE-EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            3455 667776542      56778877655322  11111112222222   56777788765     34777887765


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccc
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKE  206 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~  206 (346)
                      +-.. .... .+...-.+++..  ++.+++.||.+      ..+..||+.+
T Consensus       369 ~W~~-~~~l-p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        369 KWRE-EPPL-IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             ceee-CCCc-CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence            4322 1110 011111122322  56777777632      3577888776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.0024  Score=47.98  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             EEEEeecCCeEEEEEccCcc-eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cce
Q 019117          100 FLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV  177 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v  177 (346)
                      -++.|+.+|.|.+|.+.-.- ....+..-...|.++.-.-.++.+..++..||.|+.|++.-.+.+....   .|. .++
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~  148 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESG  148 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCc
Confidence            68999999999999986322 1112222223333333332245589999999999999998777776665   465 455


Q ss_pred             EEEEecCCCCcEEEEE--ecCCeEEEEEccc
Q 019117          178 LSVDFHPSDIYRIASC--GMDNTVKIWSMKE  206 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~  206 (346)
                      ..+.... .+..+..+  +.|..++.|++..
T Consensus       149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence            5555553 55666666  6777778887776

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.018  Score=48.92  Aligned_cols=142  Identities=11%  Similarity=0.130  Sum_probs=91.2

Q ss_pred             eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC------CcEEEEEecCCeEEEEEccccceeeeecee
Q 019117          143 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD------IYRIASCGMDNTVKIWSMKEFWTYVEKSFT  216 (346)
Q Consensus       143 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  216 (346)
                      +|.++.....++-.|++.|+.+.+++    ....|+-+.+.|+.      ...-+.|-.+..|.-||+|-....      
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk----~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------  417 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWK----FEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------  417 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEee----ccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence            44556666778889999999999998    33337777777621      122345667889999999862210      


Q ss_pred             ecCCCCCCCCccceeceEEEeecc----cceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC
Q 019117          217 WTDLPSKFPTKYVQFPVFIASVHS----NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  291 (346)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  291 (346)
                                     .+.....|.    ....|.+-. ..++++|+.+|.||+||- .+..        .-..+++-..+
T Consensus       418 ---------------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~--------AKTAlPgLG~~  473 (644)
T KOG2395|consen  418 ---------------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR--------AKTALPGLGDA  473 (644)
T ss_pred             ---------------eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhh--------hhhcccccCCc
Confidence                           111111111    122333333 679999999999999997 3331        34456666789


Q ss_pred             eeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      |..+..+.||  .++++.+ +..+.+.++.
T Consensus       474 I~hVdvtadG--Kwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  474 IKHVDVTADG--KWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eeeEEeeccC--cEEEEec-ccEEEEEEEe
Confidence            9999999999  5555544 3456666653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.04  E-value=0.0025  Score=35.17  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=30.3

Q ss_pred             CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117          128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus       128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      ...|..++|+| ..+++|.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence            45699999999 8999999999999999998 45543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.99  E-value=0.16  Score=42.22  Aligned_cols=218  Identities=11%  Similarity=0.085  Sum_probs=96.8

Q ss_pred             EcCCCCcEEEEeecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117           93 CNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  170 (346)
                      +.++|+.+|..+..+|  .+.+.|+.+++..+.-.+.........++| +.+.++-......|.-.|+++.+....+.  
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~--  119 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE--  119 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE--
Confidence            3488975666666555  577778888887765554323333556677 55666545455688889999887665555  


Q ss_pred             CCCCcceEEEEecC-CCCcEEEEEecCC----------------------eEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          171 GGHRNEVLSVDFHP-SDIYRIASCGMDN----------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       171 ~~~~~~v~~~~~~~-~~~~~l~s~~~d~----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                       .....+-...|.. .++.+++-.-...                      .|..-|+.+                     
T Consensus       120 -~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t---------------------  177 (386)
T PF14583_consen  120 -VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT---------------------  177 (386)
T ss_dssp             ---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---------------------
T ss_pred             -CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC---------------------
Confidence             3455554455532 2444433221100                      011111111                     


Q ss_pred             cceeceEEEeecccceEEEEec---CCEEEEEee---cCe-EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          228 YVQFPVFIASVHSNYVDCNRWL---GDFILSKSV---DNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                         .....+-.....+.-+.|+   +..|+-|-+   +.. -|||-+++....     ..++..-. ....+..=-|.||
T Consensus       178 ---G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----~~~v~~~~-~~e~~gHEfw~~D  248 (386)
T PF14583_consen  178 ---GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----VKKVHRRM-EGESVGHEFWVPD  248 (386)
T ss_dssp             -----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS----TTEEEEEEEE-TT
T ss_pred             ---CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----ceeeecCC-CCcccccccccCC
Confidence               1122333345556667776   445555433   321 356655543210     01111111 1223344468999


Q ss_pred             CCcceEEE----EcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          301 FHYNAAAI----GNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       301 ~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      |. .+...    ++.+..|.-+|+.+++.......+ ...++.-|+||++
T Consensus       249 G~-~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L  296 (386)
T PF14583_consen  249 GS-TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKL  296 (386)
T ss_dssp             SS--EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSE
T ss_pred             CC-EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCE
Confidence            85 22222    223556777888888755444433 3456777888864

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.13  Score=40.69  Aligned_cols=167  Identities=10%  Similarity=0.076  Sum_probs=103.4

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      +.|-...|.++.|+|.   +..+|++.....-.|+=..+|+.+..+.-..    -.....+.+.  .+|. +.++--.++
T Consensus        81 i~g~~~nvS~LTynp~---~rtLFav~n~p~~iVElt~~GdlirtiPL~g----~~DpE~Ieyi--g~n~-fvi~dER~~  150 (316)
T COG3204          81 ILGETANVSSLTYNPD---TRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----FSDPETIEYI--GGNQ-FVIVDERDR  150 (316)
T ss_pred             cccccccccceeeCCC---cceEEEecCCCceEEEEecCCceEEEecccc----cCChhHeEEe--cCCE-EEEEehhcc
Confidence            3455566999999992   3456666655555555556777777665321    1112224554  5565 777767788


Q ss_pred             eEEEEEccCcceee----------eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-----
Q 019117          109 IIRVIDVSNEKLHK----------SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-----  173 (346)
Q Consensus       109 ~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----  173 (346)
                      .+.++.++....+.          .....+.....++|.| ....|..+-+-.-+.|+.+..............+     
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~  229 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD  229 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence            88888776543211          1111256778999999 6677777777777888877633211111100011     


Q ss_pred             --CcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          174 --RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       174 --~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                        -..|.++.|++..+.+++-+.+++.+.-.|...
T Consensus       230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence              235678889986778888888888888777765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.92  E-value=0.098  Score=46.91  Aligned_cols=189  Identities=13%  Similarity=0.131  Sum_probs=102.8

Q ss_pred             EEEEeecC------CeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCeeEE
Q 019117          100 FLVAGGIN------GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICIL  165 (346)
Q Consensus       100 ~l~~~~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~  165 (346)
                      +++.|+.+      ..+..||..+++-  ...+. ....-.+++..  ++.+.++|+.|      .++..||.+..+-..
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            67777766      3688888877642  22233 22334455555  46888899988      357788887766332


Q ss_pred             EecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                       +..-...... .+++..  ++.+.+.||.||     +|..||..+.+-.                     .+..+....
T Consensus       364 -~a~M~~~R~~-~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~---------------------~va~m~~~r  418 (571)
T KOG4441|consen  364 -VAPMNTKRSD-FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT---------------------PVAPMLTRR  418 (571)
T ss_pred             -cCCccCcccc-ceeEEE--CCEEEEEeccccccccccEEEecCCCCccc---------------------ccCCCCcce
Confidence             2210011111 223333  788899999986     4666777662211                     111111111


Q ss_pred             cceEEEEecCCEEEEEeecC------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC-
Q 019117          241 NYVDCNRWLGDFILSKSVDN------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-  313 (346)
Q Consensus       241 ~~i~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-  313 (346)
                      ...-...+.|.+.++||.++      ++..||..+++-       ..+..+........ + -.-++  .+.+.|+.|+ 
T Consensus       419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------~~~~~M~~~R~~~g-~-a~~~~--~iYvvGG~~~~  487 (571)
T KOG4441|consen  419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-------TLIAPMNTRRSGFG-V-AVLNG--KIYVVGGFDGT  487 (571)
T ss_pred             eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-------eecCCcccccccce-E-EEECC--EEEEECCccCC
Confidence            22223344477788887553      577888887642       12222222221111 2 22334  5778888776 


Q ss_pred             ----cEEEEEcCCCCcce
Q 019117          314 ----KIFVWELQSSPPVL  327 (346)
Q Consensus       314 ----~i~iwd~~~~~~~~  327 (346)
                          +|..||..+.+...
T Consensus       488 ~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  488 SALSSVERYDPETNQWTM  505 (571)
T ss_pred             CccceEEEEcCCCCceeE
Confidence                37888888876433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.88  E-value=0.0037  Score=34.53  Aligned_cols=32  Identities=16%  Similarity=0.432  Sum_probs=28.5

Q ss_pred             cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       290 ~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ..|..++|+|..  .++|.++.+|.|.++.+ +++
T Consensus        12 ~~v~~~~w~P~m--dLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTM--DLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCC--CEEEEEECCCeEEEEEC-CCc
Confidence            468999999999  79999999999999999 443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.80  E-value=0.3  Score=43.96  Aligned_cols=150  Identities=14%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             CceEEEEEEeecCCCccEEEEEc------CCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVG------GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~------~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      ..+...+++|    +|+.+|...      .+. -.||-...+.....+.      .......-.|+  |+|+ .|++...
T Consensus       350 ~~vsspaiSp----dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt------~g~~~t~PsWs--pDG~-~lw~v~d  416 (591)
T PRK13616        350 GNITSAALSR----SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL------EGHSLTRPSWS--LDAD-AVWVVVD  416 (591)
T ss_pred             cCcccceECC----CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee------cCCCCCCceEC--CCCC-ceEEEec
Confidence            3567888888    677666654      232 3344332233223221      11123334454  8877 6666542


Q ss_pred             C------------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEE---EecCCCe-eEE---Ee
Q 019117          107 N------------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL---WNVQTGI-CIL---IF  167 (346)
Q Consensus       107 d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i---wd~~~~~-~~~---~~  167 (346)
                      .            +.+.+.+++.++...   ...+.|..+.|+| ++..++... ++.|.+   -....|. .+.   .+
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l  491 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV  491 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence            2            233333444443322   2356799999999 777766655 477777   4434443 110   11


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                      .  ......+..+.|.+ ++.++ .+..++.-.+|.+.
T Consensus       492 ~--~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        492 G--PGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             e--cccCCccccceEec-CCEEE-EEecCCCCceEEEe
Confidence            1  02334468899997 66644 55555545555543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.22  Score=40.63  Aligned_cols=219  Identities=11%  Similarity=0.051  Sum_probs=114.7

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc--
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--  126 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--  126 (346)
                      .++.+--.++ |.-|+..++.. ..+.      ....+.+... .+..+  .|+++. . -+.+++.+++..+..+..  
T Consensus        38 ~L~w~DI~~~~i~r~~~~~g~~-~~~~------~p~~~~~~~~-~d~~g--~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          38 ALLWVDILGGRIHRLDPETGKK-RVFP------SPGGFSSGAL-IDAGG--RLIACE-H-GVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             EEEEEeCCCCeEEEecCCcCce-EEEE------CCCCccccee-ecCCC--eEEEEc-c-ccEEEeccCCceeEEecccc
Confidence            3444444444 77787665533 2222      2222333332 22333  455553 2 366677665555322211  


Q ss_pred             ---CCCceEEEEEeCCCCceEEEeeC------C---CCEEEEecC-CCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117          127 ---HGDSINEIRTQPLKPSLVVSASK------D---ESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       127 ---~~~~v~~~~~~~~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                         .....+.+...| ++.+.++...      +   ..=.+|.+. .+..++.+.   .+-..-+.|+|+| +++.++.+
T Consensus       106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---~~~~~~NGla~Sp-Dg~tly~a  180 (307)
T COG3386         106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---DDLTIPNGLAFSP-DGKTLYVA  180 (307)
T ss_pred             CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec---CcEEecCceEECC-CCCEEEEE
Confidence               124567888888 5555554332      0   111344444 456666555   4566778999999 66555544


Q ss_pred             -ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC-eEEEEcCCC
Q 019117          194 -GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-EIVLWEPKM  269 (346)
Q Consensus       194 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-~i~iwd~~~  269 (346)
                       +..+.|..|++........                .................++.+  |.+-+++..+| .|.+|+.+ 
T Consensus       181 DT~~~~i~r~~~d~~~g~~~----------------~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIG----------------GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             eCCCCeEEEEecCcccCccC----------------CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence             5557888888863100000                001112222233444455555  55554554444 89999998 


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      ++         ++..+..+...+++++|--.....+++++..
T Consensus       244 G~---------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         244 GK---------LLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             Cc---------EEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            55         5667777767788888875322134444443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.0082  Score=55.22  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=70.0

Q ss_pred             CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecC
Q 019117          140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  219 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  219 (346)
                      ....++.|+..|.+...|+...  +..+.....-.++|++++|+. ++..++.|-.+|.|.+||+..             
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~-------------  161 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR-------------  161 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC-------------
Confidence            3457888888999999988643  221221113568999999996 999999999999999999988             


Q ss_pred             CCCCCCCccceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcC
Q 019117          220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~  267 (346)
                                ......+..|..+.+.+-+.     +..++++...|.  +|.+
T Consensus       162 ----------~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  162 ----------AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ----------CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence                      34555666666665555443     345777766664  5543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.77  E-value=0.27  Score=41.50  Aligned_cols=198  Identities=14%  Similarity=0.101  Sum_probs=86.2

Q ss_pred             EEEEee-cCCeEEEEEccC----cceeeeecc---CC----CceEEEEEeCCCCceEEEee--C----CCCEEEEecCCC
Q 019117          100 FLVAGG-INGIIRVIDVSN----EKLHKSFVG---HG----DSINEIRTQPLKPSLVVSAS--K----DESVRLWNVQTG  161 (346)
Q Consensus       100 ~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~s~~--~----d~~i~iwd~~~~  161 (346)
                      +|+..+ .++.|.|.|+.+    .+..+.+..   +.    .....+..-| ++..++|+-  .    -|-+.+.|-++.
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            555555 788999999874    344444432   11    2233455556 677777742  2    245788888877


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEec--------------------CCeEEEEEccccceeeeeceeecCCC
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--------------------DNTVKIWSMKEFWTYVEKSFTWTDLP  221 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~  221 (346)
                      +.........+....-+.+.|.| ..+.++|...                    ..++.+||+...+             
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-------------  233 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-------------  233 (461)
T ss_dssp             -EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-------------
T ss_pred             cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-------------
Confidence            77777764333344567788888 8888887643                    2589999999833             


Q ss_pred             CCCCCccceeceEEEeeccc--ceEEEEec----CC-EEEEEeecCeEEEEcC-CCCCCCCC------------Cccccc
Q 019117          222 SKFPTKYVQFPVFIASVHSN--YVDCNRWL----GD-FILSKSVDNEIVLWEP-KMKEQSPG------------EGTADI  281 (346)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~~----~~-~l~~~~~d~~i~iwd~-~~~~~~~~------------~~~~~~  281 (346)
                                .++++..-..  ....+.|.    .. -++.+....+|-.|-- ..++-...            ......
T Consensus       234 ----------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m  303 (461)
T PF05694_consen  234 ----------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM  303 (461)
T ss_dssp             ----------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred             ----------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence                      3333332222  13344443    11 2333333344444433 22210000            000112


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ++.+..-..-|+.|.+|.|.+ -+.+++=.+|.|+.||+.+-
T Consensus       304 l~~~~~~P~LitDI~iSlDDr-fLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  304 LKPFGAVPPLITDILISLDDR-FLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             GGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred             ccccccCCCceEeEEEccCCC-EEEEEcccCCcEEEEecCCC
Confidence            222222234688999999994 23455557999999999884

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.61  E-value=0.21  Score=38.14  Aligned_cols=96  Identities=11%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             EEEEec---CCEEEEEeecCeEEEEc--CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          244 DCNRWL---GDFILSKSVDNEIVLWE--PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       244 ~~~~~~---~~~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      ..++|+   ..+..+-+.+-+|.-||  ..++..........+....+......-.++..-+|  .+.+++-..++|...
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQKV  238 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC--cEEEEEecCcEEEEE
Confidence            356666   23555566677787777  44544221111111111100011112234444445  677777788999999


Q ss_pred             EcCCCCcceeeeeeee-EEEEEec
Q 019117          319 ELQSSPPVLIARLICF-SLHVKYN  341 (346)
Q Consensus       319 d~~~~~~~~~~~~~~~-~~~~~~s  341 (346)
                      |..+|+.++.++++.. +++++|-
T Consensus       239 dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEec
Confidence            9999999888887754 7777774

>PHA02790 Kelch-like protein; Provisional

Probab=96.59  E-value=0.47  Score=41.87  Aligned_cols=100  Identities=11%  Similarity=0.025  Sum_probs=50.8

Q ss_pred             EEEEeecCC-----eEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC--CCEEEEecCCCeeEEEeccc
Q 019117          100 FLVAGGING-----IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus       100 ~l~~~~~dg-----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~  170 (346)
                      ++++|+.++     .+..||..+.+-.  ..+.........+.  - ++.+.+.|+.+  ..+..||..+++-. .+...
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l  349 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSL  349 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEE-ECCCC
Confidence            667776543     5667887765422  22221111222222  2 56777788754  35778887655332 22211


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCC---eEEEEEccc
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKE  206 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~  206 (346)
                      ...... .+++..  ++.+.+.||.++   .+..||.++
T Consensus       350 ~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        350 LKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence            011111 123332  677778877654   466777765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.55  E-value=0.33  Score=39.69  Aligned_cols=247  Identities=10%  Similarity=0.031  Sum_probs=127.0

Q ss_pred             cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccCC
Q 019117           59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      ++.++|..+++.+..+..-.       ...+.  .+|+++ .++++.          ..-.|.+||..+-.....+.-..
T Consensus        18 rv~viD~d~~k~lGmi~~g~-------~~~~~--~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~   87 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTGF-------LGNVA--LSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP   87 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEES-------SEEEE--E-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred             eEEEEECCCCcEEEEeeccc-------CCcee--ECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence            58999988877766665321       11133  448998 666542          34579999999987776553222


Q ss_pred             C-------ceEEEEEeCCCCceEEEe--eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117          129 D-------SINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  199 (346)
Q Consensus       129 ~-------~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  199 (346)
                      .       ....++++. ++++++..  +--..|.|-|+..++.+.++..    .+   |.-..|....-+.+-+.||.+
T Consensus        88 k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----PG---C~~iyP~~~~~F~~lC~DGsl  159 (342)
T PF06433_consen   88 KPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----PG---CWLIYPSGNRGFSMLCGDGSL  159 (342)
T ss_dssp             S-B--BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----TS---EEEEEEEETTEEEEEETTSCE
T ss_pred             cchheecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC----CC---EEEEEecCCCceEEEecCCce
Confidence            1       223455666 55555543  2335677888888888877762    22   222223234557788889999


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                      .-..+....+...+...                  .+....+++. .-.+.  +..++-.+.+|.|+--|+.........
T Consensus       160 ~~v~Ld~~Gk~~~~~t~------------------~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~  221 (342)
T PF06433_consen  160 LTVTLDADGKEAQKSTK------------------VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK  221 (342)
T ss_dssp             EEEEETSTSSEEEEEEE------------------ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred             EEEEECCCCCEeEeecc------------------ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence            99988852221111100                  0000001010 00111  334444555666665555543311000


Q ss_pred             cccccc----ccccCCCcCeeEEEEeecCCcceEEEEc---C-----CC--cEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117          277 GTADIL----QKYPVPECDIWFIKFSCDFHYNAAAIGN---R-----EG--KIFVWELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       277 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~l~~~~---~-----dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                       ....+    ..-....+...-+++++...  .|.+--   .     |+  .|.++|+.+++.+....++..+.++..+-
T Consensus       222 -~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~--rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsq  298 (342)
T PF06433_consen  222 -PWSLLTDAEKADGWRPGGWQLIAYHAASG--RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQ  298 (342)
T ss_dssp             -EEESS-HHHHHTTEEE-SSS-EEEETTTT--EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEES
T ss_pred             -cccccCccccccCcCCcceeeeeeccccC--eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEcc
Confidence             00000    00011123344567776553  222221   1     22  47777899988888888887777887776


Q ss_pred             CC
Q 019117          343 QS  344 (346)
Q Consensus       343 dg  344 (346)
                      |.
T Consensus       299 d~  300 (342)
T PF06433_consen  299 DD  300 (342)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.34  E-value=0.018  Score=30.75  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=27.1

Q ss_pred             cceEEEEecCCCC--cEEEEEecCCeEEEEEccc
Q 019117          175 NEVLSVDFHPSDI--YRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       175 ~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~  206 (346)
                      +.|+++.|+|..+  .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998555  6888888889999999995

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.33  E-value=0.92  Score=42.28  Aligned_cols=177  Identities=17%  Similarity=0.193  Sum_probs=111.9

Q ss_pred             EeccCceeeeEeeeecCCCccceEEEEEEEcCC-CCcEEEEee----------cCCeEEEEEccCcceeeeeccC--CCc
Q 019117           64 QCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH--GDS  130 (346)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--~~~  130 (346)
                      +..+.+....+..+.....+.....++..+..| +. ++++|.          ..|.|.++.+...+.++.+..+  .+.
T Consensus       753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t-~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNT-YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEecCCceeEEeeccccccceeeeeeeeeecCCCce-EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            333344444444443332233333333445455 44 788774          3588999988774444443322  455


Q ss_pred             eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccccee
Q 019117          131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY  210 (346)
Q Consensus       131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  210 (346)
                      +.++..-  ++.++|.-  ...|++|++.+.+.++.-.   .+..++..+...- .++.++.|..-+.+.+...+..+. 
T Consensus       832 v~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg-  902 (1096)
T KOG1897|consen  832 VYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEG-  902 (1096)
T ss_pred             eeehhhh--CCeEEEec--CcEEEEEEccccceehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCC-
Confidence            6665544  45555543  4689999998886655544   5788888888886 888999999888888766665221 


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCC
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~  269 (346)
                                         ......-..++.+++++.+- ++.++.+..+|.+.+...++
T Consensus       903 -------------------~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  903 -------------------NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             -------------------ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence                               12233445678888888876 77777777788888876654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.32  E-value=0.46  Score=43.13  Aligned_cols=154  Identities=12%  Similarity=0.077  Sum_probs=92.8

Q ss_pred             ccEEEEEcCCcEEEEEeccCceeee----Eeeee-------------cCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           49 FNVFATVGGNRVTVYQCLEGGVIAA----LQSYV-------------DEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        49 ~~~la~~~~~~v~i~~~~~~~~~~~----~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ..++..+..+.|.||+...-.....    +.-..             .......|..+.... -.+...|+.+..||.|.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~-lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGD-LGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecc-cCCeeEEEEEecCCeEE
Confidence            4677788888899999764333111    00000             000123344443332 23444899999999999


Q ss_pred             EEEccC-------c----c---------eeeeeccCCCceEEEEEe--CCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117          112 VIDVSN-------E----K---------LHKSFVGHGDSINEIRTQ--PLKPSLVVSASKDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus       112 iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  169 (346)
                      +|.+++       .    +         +...+. ....+++++++  . ..++||+++....|.||-............
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEecccccccccc
Confidence            997632       0    0         111111 34578999998  6 778899999889898886654211111110


Q ss_pred             cCCCCcceEEEEecCCC----C-cEEEEEecCCeEEEEEcc
Q 019117          170 AGGHRNEVLSVDFHPSD----I-YRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~----~-~~l~s~~~d~~i~iwd~~  205 (346)
                      ...+...|-+|+|-+++    | ..+++++-.|.+.+|++.
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            11256678899998632    2 278888999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.32  E-value=0.0011  Score=59.35  Aligned_cols=215  Identities=17%  Similarity=0.216  Sum_probs=118.4

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEec--cCceeeeEeeeecCCCccceEEEEEEE-cCCCCcEEEEee
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWAC-NVDGIPFLVAGG  105 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~  105 (346)
                      ++|..+.|-.+.|-..+...+..+    -+...||++.  .|+....+..+....-+..+.-+.|+. -++.. ++..+-
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~~~----vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~-~ic~~~  202 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGRRL----VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKV-YICYGL  202 (1283)
T ss_pred             HhcCCCCcccccccccCChHHHHH----hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccc-eeeecc
Confidence            477788888888876443222211    1237788765  455444444333222334445566652 23344 888888


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEE-----------eCCCCceEEEeeCCCCEEEEecC-----CCeeEEEecc
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRT-----------QPLKPSLVVSASKDESVRLWNVQ-----TGICILIFAG  169 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~  169 (346)
                      .++.+++..+++... ..+.+|...+..++|           +| ++..|+.+..||.++.|.+.     ...++...+ 
T Consensus       203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-  279 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-  279 (1283)
T ss_pred             CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccC-
Confidence            899999888765433 445567766665554           67 78888888888888877653     223444444 


Q ss_pred             cCCCCc-ceEEEEecCCCC---------cEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          170 AGGHRN-EVLSVDFHPSDI---------YRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       170 ~~~~~~-~v~~~~~~~~~~---------~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                        .|.+ +-.|.-|+. ..         .++++++. +..+++|.....+....+               ....+.....
T Consensus       280 --phd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~---------------~~d~v~iV~p  341 (1283)
T KOG1916|consen  280 --PHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK---------------LIDGVQIVGP  341 (1283)
T ss_pred             --CCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhhhhh---------------cccceEeecC
Confidence              3542 222332442 21         23344433 456888876653322111               1122333334


Q ss_pred             cccceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117          239 HSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       239 ~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~  269 (346)
                      |...|+.+...   -..+++.+.+++|.+|.=+.
T Consensus       342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             CCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            55555543322   33566677788899986543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.26  E-value=0.36  Score=36.94  Aligned_cols=99  Identities=10%  Similarity=-0.018  Sum_probs=64.7

Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEe--cCCC-----eeEEEecccCCCC-cceEEEEecCCCCcEEEEEecCCeEE
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWN--VQTG-----ICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVK  200 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~-----~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~  200 (346)
                      +.-+.++|+.+...+.+.-+.+-+|.-||  ..+|     +.+..++..+... -..-.++..- ++.+.+++-..++|.
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ  236 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence            34467888874444555667788887788  4444     3333333211111 1233455565 788888888889999


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  251 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  251 (346)
                      ..|..+                       ++.+..+..-...|+|++|-|.
T Consensus       237 ~~dp~t-----------------------GK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  237 KVDPTT-----------------------GKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EECCCC-----------------------CcEEEEEEcCCCceEEEEecCC
Confidence            999998                       4456666667889999999843

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.22  E-value=0.69  Score=41.60  Aligned_cols=108  Identities=10%  Similarity=0.023  Sum_probs=68.5

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecC---------CCee
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ---------TGIC  163 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~---------~~~~  163 (346)
                      .-++ ..++-+....+.|||...+.....-. ...+.|.++.|... +++.+++.+..+.|.++.-.         +-..
T Consensus        39 s~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~  117 (631)
T PF12234_consen   39 SIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP  117 (631)
T ss_pred             ccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence            3454 44444445689999998877433222 35788999999642 56778888888899988542         1123


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ++.+....-...+|.+..|.+ +|.+++.++  +.+.++|-.-
T Consensus       118 i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~~  157 (631)
T PF12234_consen  118 IRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKWL  157 (631)
T ss_pred             eEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCCc
Confidence            444432212236899999997 777665543  5788876543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.21  E-value=0.34  Score=43.43  Aligned_cols=128  Identities=14%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .-.+....++...-....-+.-|.    .++..++-++.. +.|||...+.. .--..+   ...+.|..+.|.+.|+|+
T Consensus        16 ~~~w~~t~~~~T~i~~~~li~gss----~~k~a~V~~~~~~LtIWD~~~~~l-E~~~~f---~~~~~I~dLDWtst~d~q   87 (631)
T PF12234_consen   16 KIEWLLTSTFETGISNPSLISGSS----IKKIAVVDSSRSELTIWDTRSGVL-EYEESF---SEDDPIRDLDWTSTPDGQ   87 (631)
T ss_pred             eEEEEEEEEEecCCCCcceEeecc----cCcEEEEECCCCEEEEEEcCCcEE-EEeeee---cCCCceeeceeeecCCCC
Confidence            344555555544444444444443    233333333333 99999876652 222222   357889999999999999


Q ss_pred             cEEEEeecCCeEEEEEcc-----Cc----ceeeee--ccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117           99 PFLVAGGINGIIRVIDVS-----NE----KLHKSF--VGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQ  159 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~-----~~----~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  159 (346)
                       .+++.+..+.|.+|.-.     ..    ..++.+  ..|+ .+|.+..|.+ ++.+++.++  ..+.|+|-.
T Consensus        88 -siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen   88 -SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             -EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCC
Confidence             66666778889888542     11    123322  3344 6899999998 666555443  568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=96.18  E-value=0.77  Score=41.26  Aligned_cols=103  Identities=12%  Similarity=0.041  Sum_probs=51.2

Q ss_pred             CCCcEEEEeecC-----CeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCe
Q 019117           96 DGIPFLVAGGIN-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGI  162 (346)
Q Consensus        96 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~  162 (346)
                      +++ +++.|+.+     ..+..||..+.+-.  ..+...... .+++..  ++.+++.|+.+      ..+..||+.+.+
T Consensus       342 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNR-IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCE-EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            455 77777754     35777887765422  112211111 122222  56777777732      357888987654


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCC--------eEEEEEccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--------TVKIWSMKE  206 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~  206 (346)
                      -...-... ..... .+++..  ++.+++.||.+.        .+.+||..+
T Consensus       418 W~~~~~~p-~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        418 WSKGSPLP-ISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             eeecCCCC-ccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence            32211100 01111 123333  566677776432        377788776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.13  E-value=0.51  Score=37.52  Aligned_cols=168  Identities=10%  Similarity=0.041  Sum_probs=102.2

Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      .+.++.|+  |+.+ .|++..+...-.|+=..+|+.+++++-. -.....|.+.. ++++.++--.++.+.++.+.....
T Consensus        87 nvS~LTyn--p~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          87 NVSSLTYN--PDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccceeeC--CCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCcc
Confidence            36667766  8888 6666666676677776788988887531 22345677776 777777777889998888765532


Q ss_pred             EEEec-------ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          164 ILIFA-------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       164 ~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      ...++       .........-.++|+| ....|+.+-+-.-+.||.+...........             ...+-...
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-------------~~~~~~~~  228 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHA-------------SLDPTADR  228 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccccccc-------------ccCccccc
Confidence            22221       1112256678999999 666666676767788877764221111100             00011111


Q ss_pred             eecccceEEEEec---CCEEEEEeecCeEEEEcCCCC
Q 019117          237 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       237 ~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ...-..|.++.|+   +.+++-+.+++.+.-.|....
T Consensus       229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            1122346667776   567777777887877777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.04  E-value=0.041  Score=29.46  Aligned_cols=32  Identities=13%  Similarity=0.204  Sum_probs=26.8

Q ss_pred             CceEEEEEeCCCC--ceEEEeeCCCCEEEEecCC
Q 019117          129 DSINEIRTQPLKP--SLVVSASKDESVRLWNVQT  160 (346)
Q Consensus       129 ~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~  160 (346)
                      +.|.+++|+|...  .+|+-+-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998444  6888888889999999985

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=0.13  Score=48.18  Aligned_cols=115  Identities=14%  Similarity=0.016  Sum_probs=76.3

Q ss_pred             eEEEEEEEcCCCCcEEEEe--ecCCeEEEEEccCcce-----eeee------ccCCCceEEEEEeCCCCceEEEeeCCCC
Q 019117           86 FYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNEKL-----HKSF------VGHGDSINEIRTQPLKPSLVVSASKDES  152 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~-----~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~  152 (346)
                      +..+.+...+|++ ..++.  +++-.|..||+.+-..     ..-+      ........++.|+|.-....+....|+.
T Consensus       101 ~pi~~~v~~~D~t-~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDAT-DSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCc-eEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3344555557776 43333  3334788899865321     1111      1123456789999955666778888999


Q ss_pred             EEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          153 VRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       153 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      |++..+.... ....+.    .....++++|+| .+..++.|-..|++.-|...-
T Consensus       180 l~V~~~~~~~~~v~s~p----~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP----VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhhhcccC----cccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence            9988775332 222332    567889999999 999999999999999887654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.00  E-value=0.0015  Score=54.56  Aligned_cols=144  Identities=13%  Similarity=0.147  Sum_probs=94.8

Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      .+.+..-+++. -++.++.+..+..|| +.++...... .++....++|..+.+..++.+-..+.+.+||+.+.. ...+
T Consensus        37 pi~~~w~~e~~-nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL  112 (615)
T KOG2247|consen   37 PIIHRWRPEGH-NLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL  112 (615)
T ss_pred             cceeeEecCCC-ceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH
Confidence            34444447777 477777788899999 4455444443 455667888888445566667788999999997543 2222


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  247 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  247 (346)
                      .....+....  +.|++ +...++.+...|.+.+++....+                       .+.....|...+++++
T Consensus       113 E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR-----------------------~iiv~Gkh~RRgtq~a  166 (615)
T KOG2247|consen  113 ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR-----------------------RIIVMGKHQRRGTQIA  166 (615)
T ss_pred             hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh-----------------------hhhhhcccccceeEEE
Confidence            2211233333  77898 88888899899999999988722                       2233344777778887


Q ss_pred             ec-CCEEEEEeecCe
Q 019117          248 WL-GDFILSKSVDNE  261 (346)
Q Consensus       248 ~~-~~~l~~~~~d~~  261 (346)
                      +. .++.+.++.|..
T Consensus       167 v~lEd~vil~dcd~~  181 (615)
T KOG2247|consen  167 VTLEDYVILCDCDNT  181 (615)
T ss_pred             ecccceeeecCcHHH
Confidence            77 556666555543

>PHA02790 Kelch-like protein; Provisional

Probab=96.00  E-value=1  Score=39.79  Aligned_cols=101  Identities=6%  Similarity=-0.074  Sum_probs=50.7

Q ss_pred             CCCCcEEEEeecC--CeEEEEEccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCC---CEEEEecCCCeeEEEe
Q 019117           95 VDGIPFLVAGGIN--GIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIF  167 (346)
Q Consensus        95 ~~~~~~l~~~~~d--g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~  167 (346)
                      .+|. +.+.|+.+  ..+..||..+.+  .+..+.........+..   ++.+.+.|+.++   .+..||.++.+-...-
T Consensus       317 ~~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~  392 (480)
T PHA02790        317 ANNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGP  392 (480)
T ss_pred             ECCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence            4566 66777753  357788876543  22222211112222222   567778877653   4678888765433211


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      .. ...... .+++..  ++.+.+.|+   .+.+||..+
T Consensus       393 ~m-~~~r~~-~~~~~~--~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        393 ST-YYPHYK-SCALVF--GRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CC-CCcccc-ceEEEE--CCEEEEECC---ceEEecCCC
Confidence            10 001111 123222  566666663   567788765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.42  Score=45.90  Aligned_cols=209  Identities=15%  Similarity=0.052  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      ..++++|.-. +++.+...|.|+++-...-+.....+... ..+..+.+-. ..........+..+.+|.......+.  
T Consensus        39 ~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~--  114 (993)
T KOG1983|consen   39 SALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTGVF--  114 (993)
T ss_pred             cceeeccccc-eEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccceee--
Confidence            4566678877 99999999999999754333222211111 1222222222 22223333444555556543222111  


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec-----------------CCCCCCCCc--c
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------------DLPSKFPTK--Y  228 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~  228 (346)
                           ....+++....+ --.+ +-+ ..+.+++||..-.......-....                 .........  .
T Consensus       115 -----~~~~~~~~~~~~-~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  186 (993)
T KOG1983|consen  115 -----LKQEITSFVTDP-PPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS  186 (993)
T ss_pred             -----cCCcceeccCCC-Ccch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Confidence                 223334443332 2222 333 666677766654111000000000                 000000000  0


Q ss_pred             ceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE
Q 019117          229 VQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  307 (346)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  307 (346)
                      .......+..+...+.+..+. ..-++.+...+.+-+|+.....         ....+.....     ..+.++  ..++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~--~~~v  250 (993)
T KOG1983|consen  187 LPDAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---------VQSAYLPNGQ-----LESRDG--SHFV  250 (993)
T ss_pred             cccccccccccccccceeeeecCCCcceeeeeeeeeehhccccc---------chhhcccccc-----cCccCC--ceEE
Confidence            000012333444555555554 4455556666677777765433         1122211111     116666  7999


Q ss_pred             EEcCCCcEEEEEcCCCCc
Q 019117          308 IGNREGKIFVWELQSSPP  325 (346)
Q Consensus       308 ~~~~dg~i~iwd~~~~~~  325 (346)
                      ++..||.+.+||+..++.
T Consensus       251 ~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  251 SYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             EEEecCCEEeeecCCCce
Confidence            999999999999999865

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.85  E-value=1.6  Score=40.81  Aligned_cols=118  Identities=14%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCc-c--ceEEEEEEEc--------------CCCCcEEEEeecCCeEE
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE-E--SFYTVSWACN--------------VDGIPFLVAGGINGIIR  111 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~-~--~v~~~~~~~~--------------~~~~~~l~~~~~dg~i~  111 (346)
                      ..+..++.++ |.-.|..+|+.+..+......... .  ....+++.-.              ..+. .++.++.|+.+.
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~Li  273 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARLI  273 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeEE
Confidence            4455555544 999999998887766532211000 0  0011122101              1233 678888899999


Q ss_pred             EEEccCcceeeeeccCCCceE-------------EEEEeCC-CCceEEEeeC----------CCCEEEEecCCCeeEEEe
Q 019117          112 VIDVSNEKLHKSFVGHGDSIN-------------EIRTQPL-KPSLVVSASK----------DESVRLWNVQTGICILIF  167 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~  167 (346)
                      -.|.++|+....+.. .+.|.             .+.-.|. .+..++.|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876642 22111             0111110 1235555542          688999999999999988


Q ss_pred             cc
Q 019117          168 AG  169 (346)
Q Consensus       168 ~~  169 (346)
                      ..
T Consensus       353 ~~  354 (764)
T TIGR03074       353 DP  354 (764)
T ss_pred             ec
Confidence            63

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.81  E-value=1.4  Score=39.89  Aligned_cols=102  Identities=11%  Similarity=-0.007  Sum_probs=54.5

Q ss_pred             ceEEEEEEEcCCCCcEEEEee------cCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC------
Q 019117           85 SFYTVSWACNVDGIPFLVAGG------ING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD------  150 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------  150 (346)
                      .+...++  +|+|+ .++...      .|.  .|.+++.. +.......+  ...+.-.|+| ++..+++....      
T Consensus       351 ~vsspai--SpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAAL--SRSGR-QVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceE--CCCCC-EEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence            3444444  48998 555443      244  45555542 222222232  2378889999 76766666432      


Q ss_pred             ------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          151 ------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       151 ------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                            +.+.+.++..++...      ...+.|..+.|+| ++..++... ++.|.+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence                  222222333222211      1345799999999 776665544 466666

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.80  E-value=0.14  Score=43.42  Aligned_cols=94  Identities=15%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC---
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD---   96 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---   96 (346)
                      .+......|......+.+|..+|    ++.+.|+...-| |.++|+..+..++..+++.+..       +.|....+   
T Consensus       295 ~~l~~r~~l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq-------c~wi~~~~~~~  363 (415)
T PF14655_consen  295 APLPMRFGLPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ-------CGWIEVPEEGD  363 (415)
T ss_pred             cccceEEeeccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce-------EEEEEeecccc
Confidence            44555666677777899999999    677777775555 9999999999998888875432       22221111   


Q ss_pred             ---------------CCcEEEEeecCCeEEEEEccCcceeeeec
Q 019117           97 ---------------GIPFLVAGGINGIIRVIDVSNEKLHKSFV  125 (346)
Q Consensus        97 ---------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  125 (346)
                                     ...+++-+-..|.|.||.++++..+..+.
T Consensus       364 ~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  364 RDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             cccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence                           11134445678999999999888776654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.58  E-value=1  Score=36.71  Aligned_cols=153  Identities=10%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      +-...+..+.-++    +|.++++++.+. ..-|+  .++ .......    .....+..+.|.  |++. +.+ ....|
T Consensus       142 ~~~gs~~~~~r~~----dG~~vavs~~G~~~~s~~--~G~~~w~~~~r----~~~~riq~~gf~--~~~~-lw~-~~~Gg  207 (302)
T PF14870_consen  142 ETSGSINDITRSS----DGRYVAVSSRGNFYSSWD--PGQTTWQPHNR----NSSRRIQSMGFS--PDGN-LWM-LARGG  207 (302)
T ss_dssp             S----EEEEEE-T----TS-EEEEETTSSEEEEE---TT-SS-EEEE------SSS-EEEEEE---TTS--EEE-EETTT
T ss_pred             CCcceeEeEEECC----CCcEEEEECcccEEEEec--CCCccceEEcc----Cccceehhceec--CCCC-EEE-EeCCc
Confidence            3446677877776    889999998888 45555  232 2232222    145677777776  8876 444 44788


Q ss_pred             eEEEEE-ccCcceeee----eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          109 IIRVID-VSNEKLHKS----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       109 ~i~iwd-~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      .|+.=+ ....+.-..    +....-.+.+++|.+ +....++|+ .|.+ +.....|+.-+..+....-...++.+.|.
T Consensus       208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~  284 (302)
T PF14870_consen  208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFV  284 (302)
T ss_dssp             EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEE
T ss_pred             EEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEc
Confidence            888877 222221111    112233478999998 666666555 4655 34556677666655333345678889997


Q ss_pred             CCCCcEEEEEecCCeEEEE
Q 019117          184 PSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iw  202 (346)
                      + .. .-+..+.+|.|.-|
T Consensus       285 ~-~~-~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  285 N-PD-KGFVLGQDGVLLRY  301 (302)
T ss_dssp             E-TT-EEEEE-STTEEEEE
T ss_pred             C-CC-ceEEECCCcEEEEe
Confidence            5 43 44555678887665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.53  E-value=0.92  Score=35.83  Aligned_cols=168  Identities=8%  Similarity=-0.024  Sum_probs=98.1

Q ss_pred             cceeeeeecccCC-CceEEEEEEeecCCCccEEEEEcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           21 REYRVTNKLQEGK-RPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        21 ~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      ..++.+.++.... .-...+.|..    ++.++-+.+.-+   |+.+|+.+++......- ......+.   ++..   +
T Consensus        31 ~~~~vv~~ypHd~~aFTQGL~~~~----~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEG---it~~---~   99 (264)
T PF05096_consen   31 YSYEVVETYPHDPTAFTQGLEFLD----DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEG---ITIL---G   99 (264)
T ss_dssp             EEEEEEEEEE--TT-EEEEEEEEE----TTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEE---EEEE---T
T ss_pred             eeeEEEEECCCCCcccCccEEecC----CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-Ccccccee---EEEE---C
Confidence            3567777764322 2345788855    578888777655   99999999886655431 11112222   3332   2


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC--CCC
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--GHR  174 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~  174 (346)
                      ++ +..-.-.++...+||.++.+.+.++. ..+.=..++.   ++..|+.......|.++|..+.+....+....  ..-
T Consensus       100 d~-l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv  174 (264)
T PF05096_consen  100 DK-LYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV  174 (264)
T ss_dssp             TE-EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred             CE-EEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence            33 55555678999999999998888876 3455677773   44556655556789999998877776665321  112


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ..++-+.|.  ++...+-.=....|..-|..+
T Consensus       175 ~~LNELE~i--~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  175 SNLNELEYI--NGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             --EEEEEEE--TTEEEEEETTSSEEEEEETTT
T ss_pred             CCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC
Confidence            345667776  555555555555566666665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.42  E-value=1.6  Score=37.81  Aligned_cols=112  Identities=14%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             EEEEcCCCCcEEEEe-ecCC----eEEEEEccCcceeeeeccCCCceEEEEEeCCCCce-EEEeeCC----------CCE
Q 019117           90 SWACNVDGIPFLVAG-GING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL-VVSASKD----------ESV  153 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d----------~~i  153 (346)
                      .+.++|+|+ ++|.+ +..|    .++++|+.+++.+...-... ....+.|.+ ++.. +.+...+          ..|
T Consensus       128 ~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  128 GFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence            677889999 66644 4444    59999999997665321111 123499999 5454 4444332          237


Q ss_pred             EEEecCCCeeE--EEecccCCCCcceEEEEecCCCCcEEEE-EecC---CeEEEEEccc
Q 019117          154 RLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMD---NTVKIWSMKE  206 (346)
Q Consensus       154 ~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d---~~i~iwd~~~  206 (346)
                      +.|.+.+...-  ..+... ........+..++ ++++++. ....   ..+.+.|+..
T Consensus       205 ~~~~~gt~~~~d~lvfe~~-~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEP-DEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-T-TCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEECCCChHhCeeEEeec-CCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccc
Confidence            78887665432  334321 1222256788887 6666554 3332   3466667665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.22  E-value=0.19  Score=38.92  Aligned_cols=80  Identities=13%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             ceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc-cccccccc----CCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT-ADILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       242 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      .+..+...++++++.+.+|.+++||+.+.+....... ...+....    .....|..+.++.+|  .-+++-+ +|..+
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~ls-ng~~y   90 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLS-NGDSY   90 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEe-CCCEE
Confidence            3444555589999999999999999998875322211 11111100    345678889999887  4455544 57889


Q ss_pred             EEEcCCCC
Q 019117          317 VWELQSSP  324 (346)
Q Consensus       317 iwd~~~~~  324 (346)
                      .|+..-+.
T Consensus        91 ~y~~~L~~   98 (219)
T PF07569_consen   91 SYSPDLGC   98 (219)
T ss_pred             Eeccccce
Confidence            99876654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=0.98  Score=34.04  Aligned_cols=106  Identities=18%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             CCCcEEEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC
Q 019117           96 DGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH  173 (346)
Q Consensus        96 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  173 (346)
                      +|. ++.+.+.  ...|++||+.+++.+....-....+..=-....+.....-.-.+|.-..+|.++-+.+..+.    .
T Consensus        55 ~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~----y  129 (262)
T COG3823          55 DGH-ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS----Y  129 (262)
T ss_pred             CCE-EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc----c
Confidence            444 6666654  34799999999987665442221221111111123333344567888899999888888776    6


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                      ++.=..++-.  +.+ |+.+....+++.-|..++..
T Consensus       130 ~GeGWgLt~d--~~~-LimsdGsatL~frdP~tfa~  162 (262)
T COG3823         130 EGEGWGLTSD--DKN-LIMSDGSATLQFRDPKTFAE  162 (262)
T ss_pred             CCcceeeecC--Ccc-eEeeCCceEEEecCHHHhhh
Confidence            6666777653  444 55555556788877777543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.18  E-value=2.2  Score=38.15  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=65.5

Q ss_pred             ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEE-----EEEEcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117           49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTV-----SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS  123 (346)
Q Consensus        49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  123 (346)
                      +.++++...+.|.-+|..+++.+.....-... ......+.     ..+.  .+. .++.++.++.|.-.|..+|+.+..
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av--~~~-~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVAL--YDG-KVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCc-ccccccccccccccceE--ECC-EEEEEcCCCEEEEEECCCCCEEee
Confidence            44444444445889999998877665431110 00000000     0011  123 577788899999999999998876


Q ss_pred             eccC--CC--ceEE-EEEeCCCCceEEEee------CCCCEEEEecCCCeeEEEecc
Q 019117          124 FVGH--GD--SINE-IRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus       124 ~~~~--~~--~v~~-~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~  169 (346)
                      ....  ..  .+.+ -...  ++ .++.+.      .+|.|..+|.++|+.+..+..
T Consensus       146 ~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             cccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            5421  10  1111 1111  33 444443      268999999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.17  E-value=0.93  Score=39.79  Aligned_cols=119  Identities=17%  Similarity=0.125  Sum_probs=66.2

Q ss_pred             CccceEEEEEEEc-CCCCcEEEEeecCCeEEEEEccC-----cceeeeeccC---CCc--eEEEEEeCCCCceEEEeeCC
Q 019117           82 KEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVGH---GDS--INEIRTQPLKPSLVVSASKD  150 (346)
Q Consensus        82 ~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~---~~~--v~~~~~~~~~~~~l~s~~~d  150 (346)
                      .-+.|..++|++- ..+.+.|++......|.||-+..     .+.+.....+   .-+  -..+.|+| ....|+.-...
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~  133 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR  133 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence            3356777999832 11222455556678999999752     2222111111   111  23577999 66666655544


Q ss_pred             CCEEEEecCCCe--eEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccc
Q 019117          151 ESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKE  206 (346)
Q Consensus       151 ~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~  206 (346)
                      ..-.+.+++...  ....++    ..+.|.|.+|.+ +|..|+.+ +..=.-++||-..
T Consensus       134 dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIK----TSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ceeEeeeeeeCCceEEEecc----CCceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence            433456665333  223333    678999999998 65555544 4433456676543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.19  Score=47.24  Aligned_cols=147  Identities=12%  Similarity=0.011  Sum_probs=85.0

Q ss_pred             ceEEEEEEeecCCCccE--EEEEcCCc-EEEEEeccCcee-----eeEeeeecCCCccce--EEEEEEEcCCCCcEEEEe
Q 019117           35 PLYAVVFNFIDSRYFNV--FATVGGNR-VTVYQCLEGGVI-----AALQSYVDEDKEESF--YTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~--la~~~~~~-v~i~~~~~~~~~-----~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~l~~~  104 (346)
                      +|..+...+    |+..  ++..+.+. |..||+.+-...     ..+..+.. .....+  .++.|.+.+.-  ..+..
T Consensus       102 pi~~~v~~~----D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t-s~ek~vf~~~~~wnP~vp~--n~av~  174 (1405)
T KOG3630|consen  102 PIVIFVCFH----DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT-SFEKPVFQLKNVWNPLVPL--NSAVD  174 (1405)
T ss_pred             cceEEEecc----CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc-hhccccccccccccCCccc--hhhhh
Confidence            455555555    3333  33333433 889998743221     11111110 112223  33445433333  46677


Q ss_pred             ecCCeEEEEEccCcce-eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-CcceEEEEe
Q 019117          105 GINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-RNEVLSVDF  182 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~  182 (346)
                      ..|+.|++..+..... +..++ -...+++++|+| .+..++.|-..|++.-|... .+....+...... ...|.+|+|
T Consensus       175 l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  175 LSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             ccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence            7799999887654332 22333 456789999999 99999999999999988754 4444444432222 478999999


Q ss_pred             cCCCCcEEEE
Q 019117          183 HPSDIYRIAS  192 (346)
Q Consensus       183 ~~~~~~~l~s  192 (346)
                      .. ...+++.
T Consensus       252 l~-t~eflvv  260 (1405)
T KOG3630|consen  252 LS-TQEFLVV  260 (1405)
T ss_pred             ec-ceeEEEE
Confidence            85 5454443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.06  E-value=1.8  Score=36.42  Aligned_cols=158  Identities=13%  Similarity=0.117  Sum_probs=87.5

Q ss_pred             EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE-EEEeec-C---CeEE
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF-LVAGGI-N---GIIR  111 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-l~~~~~-d---g~i~  111 (346)
                      -+|-.+|.+|....++.|--..++.+||+. |+.+..+..    ..-..| .+...+.-+|+.. |+.++. +   ..|+
T Consensus        57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~----Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~  130 (381)
T PF02333_consen   57 PAIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV----GRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLR  130 (381)
T ss_dssp             EEEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S----S-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEE
T ss_pred             CcEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC----CCccee-eeecceecCCceEEEEEEecCcCCCCeEE
Confidence            357778877755555555555569999964 555554431    111222 1222233345422 444442 2   4799


Q ss_pred             EEEccC--cceeeeecc-------CCCceEEEEEe--CCCC-ceEEEeeCCCCEEEEecC---CC----eeEEEecccCC
Q 019117          112 VIDVSN--EKLHKSFVG-------HGDSINEIRTQ--PLKP-SLVVSASKDESVRLWNVQ---TG----ICILIFAGAGG  172 (346)
Q Consensus       112 iwd~~~--~~~~~~~~~-------~~~~v~~~~~~--~~~~-~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~  172 (346)
                      +|.+..  +. +..+..       ....+..+++.  |.++ -+++....+|.+..|.+.   .+    +.++.|.    
T Consensus       131 ~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~----  205 (381)
T PF02333_consen  131 LFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK----  205 (381)
T ss_dssp             EEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----
T ss_pred             EEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec----
Confidence            998753  33 222221       12345666663  4233 366677888988888774   23    4577776    


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      -.+.+..|.... ....|+.+-++.-|.-|+.+.
T Consensus       206 ~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep  238 (381)
T PF02333_consen  206 VGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEP  238 (381)
T ss_dssp             -SS-EEEEEEET-TTTEEEEEETTTEEEEEESSC
T ss_pred             CCCcceEEEEec-ccCCEEEecCccEEEEEecCC
Confidence            456889999986 777888888887777777664

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.06  E-value=1.1  Score=37.93  Aligned_cols=55  Identities=9%  Similarity=-0.042  Sum_probs=30.1

Q ss_pred             cCeeEEEEeecCCcceEEEEcC------------------CCcEEEEEcCCCCcceeeeee-eeEEEEEecCCCCC
Q 019117          290 CDIWFIKFSCDFHYNAAAIGNR------------------EGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQSVY  346 (346)
Q Consensus       290 ~~v~~~~~s~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg~~  346 (346)
                      .....++|.||+. -++..++.                  .|.|.-++..+++. ..+... ..+..++|+|+|++
T Consensus       124 ~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l  197 (367)
T TIGR02604       124 HSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDV  197 (367)
T ss_pred             ccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCE
Confidence            3477899999983 23333321                  13455555555442 222211 12467999998863

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.95  E-value=0.0029  Score=52.97  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=90.5

Q ss_pred             EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV  115 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  115 (346)
                      ....|-|.   +++ ++.++.+. +..|| ..++......      .......++|.  .++...++.+-..+.+.+||+
T Consensus        38 i~~~w~~e---~~n-lavaca~tiv~~YD-~agq~~le~n------~tg~aldm~wD--kegdvlavlAek~~piylwd~  104 (615)
T KOG2247|consen   38 IIHRWRPE---GHN-LAVACANTIVIYYD-KAGQVILELN------PTGKALDMAWD--KEGDVLAVLAEKTGPIYLWDV  104 (615)
T ss_pred             ceeeEecC---CCc-eehhhhhhHHHhhh-hhcceecccC------CchhHhhhhhc--cccchhhhhhhcCCCeeechh
Confidence            34566662   334 66666666 88888 3344333322      22333335555  577656777778899999999


Q ss_pred             cCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117          116 SNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       116 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                      .+....+.-.+  |...  -+.|++ +...++.+...|.+.|++..+.+.+....   .|...++++++.+ . .+.+.+
T Consensus       105 n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~l-E-d~vil~  176 (615)
T KOG2247|consen  105 NSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTL-E-DYVILC  176 (615)
T ss_pred             hhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecc-c-ceeeec
Confidence            76542221111  2333  278998 88888888899999999988777666554   4899999999997 3 345555


Q ss_pred             ecCC
Q 019117          194 GMDN  197 (346)
Q Consensus       194 ~~d~  197 (346)
                      +.|.
T Consensus       177 dcd~  180 (615)
T KOG2247|consen  177 DCDN  180 (615)
T ss_pred             CcHH
Confidence            5554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.95  E-value=0.8  Score=31.81  Aligned_cols=109  Identities=8%  Similarity=-0.032  Sum_probs=66.3

Q ss_pred             EEEEeCCCCceEEEeeCCCCEEEEecCCC--------eeEEEecccCCCCcceEEEEecC----CCCcEEEEEecCCeEE
Q 019117          133 EIRTQPLKPSLVVSASKDESVRLWNVQTG--------ICILIFAGAGGHRNEVLSVDFHP----SDIYRIASCGMDNTVK  200 (346)
Q Consensus       133 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~d~~i~  200 (346)
                      .-+|.. ....|+.++.-|+|.|.+....        ..+..+.    -...|++++--+    .+...|+.|+ ...+.
T Consensus         3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~ll   76 (136)
T PF14781_consen    3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLL   76 (136)
T ss_pred             EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEE
Confidence            345555 4557888888899999987633        3445554    566777776443    2356666666 46899


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcCCCCC
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      .||+.....                       ++.. .-++.|.++.+-     ..-++..+.+..|.=||....+
T Consensus        77 aYDV~~N~d-----------------------~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   77 AYDVENNSD-----------------------LFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             EEEcccCch-----------------------hhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            999988322                       2211 223556666663     2345555555677777765443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.91  E-value=0.088  Score=28.16  Aligned_cols=42  Identities=7%  Similarity=0.010  Sum_probs=30.7

Q ss_pred             ecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEec
Q 019117          299 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYN  341 (346)
Q Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s  341 (346)
                      |+++ .++++...++.|.++|..+++.+........+..+.|+
T Consensus         1 pd~~-~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGT-KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCC-EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            3453 35566667899999999988877777776667777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.71  E-value=0.11  Score=43.65  Aligned_cols=229  Identities=14%  Similarity=0.157  Sum_probs=120.3

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcc----eeeeeccCCCc-eEE----EEEeCCCCceEEEeeCCCCEEEEecC
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDS-INE----IRTQPLKPSLVVSASKDESVRLWNVQ  159 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~-v~~----~~~~~~~~~~l~s~~~d~~i~iwd~~  159 (346)
                      +.|+-.|.|+..++.|..||.+.+....-..    +-..+.....+ -..    ..-+| ..++.+....+....++|..
T Consensus       118 v~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~-~~~lalA~~~~~qf~~~~~t  196 (733)
T COG4590         118 VLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHP-LQQLALALTAEAQFATYDNT  196 (733)
T ss_pred             cccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccch-HHHhhhccchhhHHHHhhhh
Confidence            5677677888899999999999998643110    11111100000 000    01111 12233344444444444432


Q ss_pred             C------------CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          160 T------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       160 ~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                      .            ++.+..+.   .....|..+-..| +++.+..-+. ..+.++++.+......+-.....      ..
T Consensus       197 ~~~~~L~g~~t~q~e~i~~L~---~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp------g~  265 (733)
T COG4590         197 QQIQILRGDRTTQQEIIRLLS---VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP------GD  265 (733)
T ss_pred             hhhhhhhcccCchhhhhhhcC---CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCC------Cc
Confidence            2            12222232   3456777888999 8887776654 68899998873221111100000      00


Q ss_pred             cceeceEEEeecccceE-EEE-ec-CCEEEEEeecCeEEEE-cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117          228 YVQFPVFIASVHSNYVD-CNR-WL-GDFILSKSVDNEIVLW-EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  303 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~i~-~~~-~~-~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  303 (346)
                                 ....|+ .+. .+ |..+++++.||.|.-| |.+....    .+...++.++.....+..  ..|+...
T Consensus       266 -----------~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~----p~l~h~R~f~l~pa~~~~--l~pe~~r  328 (733)
T COG4590         266 -----------SRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ----PHLNHIRNFKLAPAEVQF--LLPETNR  328 (733)
T ss_pred             -----------hHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC----CcceeeeccccCccccee--ecccccc
Confidence                       000011 011 11 5678889999999887 4443321    122233333333333333  3344443


Q ss_pred             ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          304 NAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +-+++-+.+|.+..+.....+++.....-..+..+++||.+.|
T Consensus       329 kgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         329 KGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY  371 (733)
T ss_pred             ceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence            6788889999999988776666555444445677889998764

>PRK13684 Ycf48-like protein; Provisional

Probab=94.70  E-value=2.2  Score=35.67  Aligned_cols=154  Identities=8%  Similarity=-0.016  Sum_probs=82.9

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ...++++.+.|    ++.+++++..+.+. -....+ +....+..    .....++.+.+.  ++++ .++++ ..|.+.
T Consensus       172 ~g~~~~i~~~~----~g~~v~~g~~G~i~-~s~~~gg~tW~~~~~----~~~~~l~~i~~~--~~g~-~~~vg-~~G~~~  238 (334)
T PRK13684        172 AGVVRNLRRSP----DGKYVAVSSRGNFY-STWEPGQTAWTPHQR----NSSRRLQSMGFQ--PDGN-LWMLA-RGGQIR  238 (334)
T ss_pred             cceEEEEEECC----CCeEEEEeCCceEE-EEcCCCCCeEEEeeC----CCcccceeeeEc--CCCC-EEEEe-cCCEEE
Confidence            34678888887    56677666555432 221222 33333322    134556666655  7777 55554 567665


Q ss_pred             EEEccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          112 VIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       112 iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      +=..+.++.-.....    ....+.++.+.+ ++..++ ++.+|.+. .....++.-........-....+.+.|.. +.
T Consensus       239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~  314 (334)
T PRK13684        239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PE  314 (334)
T ss_pred             EccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CC
Confidence            433344432222111    223578889988 555544 55567654 44455555444431112234677788774 55


Q ss_pred             cEEEEEecCCeEEEEEc
Q 019117          188 YRIASCGMDNTVKIWSM  204 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~  204 (346)
                      .. +..+..|.|..|+-
T Consensus       315 ~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        315 KG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             ce-EEECCCceEEEecC
Confidence            54 44566788877753

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.65  E-value=1.3  Score=38.96  Aligned_cols=125  Identities=11%  Similarity=0.023  Sum_probs=69.6

Q ss_pred             cCCCceEEEEEEeecCCCc-cEEEEEcCCcEEEEEecc--CceeeeEeeeecCCCcc--ceEEEEEEEcCCCCcEEEEee
Q 019117           31 EGKRPLYAVVFNFIDSRYF-NVFATVGGNRVTVYQCLE--GGVIAALQSYVDEDKEE--SFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~-~~la~~~~~~v~i~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      |.-+.|..+.|.|....+- .+||+--...|.||.+..  .+.-+.+.....+ ..+  ++..-.+.++|... .|++-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcE-i~e~~pvLpQGCVWHPk~~-iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCE-IREPFPVLPQGCVWHPKKA-ILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeee-ccCCcccCCCcccccCCCc-eEEEEe
Confidence            4456799999999544333 677777777799999862  1111111111100 111  11111222337666 666665


Q ss_pred             cCCeEEEEEccC--cceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCCEEEEecC
Q 019117          106 INGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQ  159 (346)
Q Consensus       106 ~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~  159 (346)
                      ....=.++++..  .+....++ ..+-|.|.+|.+ +++.|+ +.+..=.-++||-.
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCceEEEecc-CCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence            554444555533  33444454 567899999999 555544 44544566788854

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.51  E-value=2  Score=34.29  Aligned_cols=148  Identities=16%  Similarity=0.101  Sum_probs=80.9

Q ss_pred             ceEEEEEEeecCCCccEEEEEc--CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVG--GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~--~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .+...++++    ++..+|...  .++-.+|-...+.....+.      ....+..-+|.  +++. ..+....+...++
T Consensus        25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~------~g~~l~~PS~d--~~g~-~W~v~~~~~~~~~   91 (253)
T PF10647_consen   25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL------TGGSLTRPSWD--PDGW-VWTVDDGSGGVRV   91 (253)
T ss_pred             cccceEECC----CCCeEEEEEEcCCCCEEEEEcCCCcceeec------cCCcccccccc--CCCC-EEEEEcCCCceEE
Confidence            678899998    677776655  4554444444444333332      12244445555  7776 5555555666666


Q ss_pred             EE-ccCccee-eeecc--CCCceEEEEEeCCCCceEEEee---CCCCEEEEecC---CC--eeE-EEecccCCCCcceEE
Q 019117          113 ID-VSNEKLH-KSFVG--HGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQ---TG--ICI-LIFAGAGGHRNEVLS  179 (346)
Q Consensus       113 wd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~---~~--~~~-~~~~~~~~~~~~v~~  179 (346)
                      +. ..+++.. ..+..  -...|..+.++| ++..++...   .++.|.+--+.   .+  ..+ ..+.........+..
T Consensus        92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   92 VRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            63 3333321 12221  122899999999 666665544   34667666543   22  111 111111123568899


Q ss_pred             EEecCCCCcEEEEEecCC
Q 019117          180 VDFHPSDIYRIASCGMDN  197 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~  197 (346)
                      ++|.+ +..+++.+...+
T Consensus       171 v~W~~-~~~L~V~~~~~~  187 (253)
T PF10647_consen  171 VAWSD-DSTLVVLGRSAG  187 (253)
T ss_pred             eeecC-CCEEEEEeCCCC
Confidence            99997 666666655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.44  E-value=1.7  Score=33.14  Aligned_cols=122  Identities=11%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             ceEEEeeCCCCEEEEecC--CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC------eEEEE-Ecccc--cee
Q 019117          142 SLVVSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEF--WTY  210 (346)
Q Consensus       142 ~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw-d~~~~--~~~  210 (346)
                      +.|+.+...+.|.+|++.  ..+.+..|.    .-+.|..+.++. .|++++|--.+.      .+|+| +.+..  ...
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~  103 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS  103 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence            444444556789999988  445666665    568999999997 899999864332      45553 22221  111


Q ss_pred             eeeceeecCCCCC---CCCccceeceEEEee--cccceEEEEecCCEEEEEeecCeEEEEcCCCCC
Q 019117          211 VEKSFTWTDLPSK---FPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       211 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      .. .....+++..   ......+..+..+..  .+..|.|+...|++++.+  ++++.+|.+....
T Consensus       104 ~v-~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~  166 (215)
T PF14761_consen  104 PV-RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT  166 (215)
T ss_pred             cE-EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence            11 1111121111   111111223333333  333445555558877643  4689999887654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.39  E-value=2.3  Score=34.69  Aligned_cols=235  Identities=11%  Similarity=0.040  Sum_probs=102.0

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV  115 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  115 (346)
                      .++|.|..     ...+++| ..++.+.....++....+..- ..... ....+...  .++. .++ ++..|.|  |..
T Consensus        64 l~~I~f~~-----~~g~ivG-~~g~ll~T~DgG~tW~~v~l~-~~lpg-s~~~i~~l--~~~~-~~l-~~~~G~i--y~T  129 (302)
T PF14870_consen   64 LNSISFDG-----NEGWIVG-EPGLLLHTTDGGKTWERVPLS-SKLPG-SPFGITAL--GDGS-AEL-AGDRGAI--YRT  129 (302)
T ss_dssp             EEEEEEET-----TEEEEEE-ETTEEEEESSTTSS-EE-----TT-SS--EEEEEEE--ETTE-EEE-EETT--E--EEE
T ss_pred             EEEEEecC-----CceEEEc-CCceEEEecCCCCCcEEeecC-CCCCC-CeeEEEEc--CCCc-EEE-EcCCCcE--EEe
Confidence            56677753     3455554 455655555556655554311 11112 22222222  3333 333 3444543  333


Q ss_pred             -cCccee-eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117          116 -SNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       116 -~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                       +.++.- .......+.+..+..++ ++.+++++..-.-..-||.-...-...-+   .....|..|.|.| ++.+.+.+
T Consensus       130 ~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~-~~~lw~~~  204 (302)
T PF14870_consen  130 TDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSP-DGNLWMLA  204 (302)
T ss_dssp             SSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE
T ss_pred             CCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEcc---CccceehhceecC-CCCEEEEe
Confidence             333322 22334457788888888 88888887665555577753221111112   3568999999998 76665544


Q ss_pred             ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCC
Q 019117          194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~  272 (346)
                       ..|.|++=+.........                  .++.......-.+..++|. .+.+.+++..|.+ +...+.++.
T Consensus       205 -~Gg~~~~s~~~~~~~~w~------------------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGkt  264 (302)
T PF14870_consen  205 -RGGQIQFSDDPDDGETWS------------------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKT  264 (302)
T ss_dssp             -TTTEEEEEE-TTEEEEE---------------------B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS
T ss_pred             -CCcEEEEccCCCCccccc------------------cccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCcc
Confidence             788888876222111000                  0011111122336778887 4555556666644 444555541


Q ss_pred             CCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                            .+.......-...+..+.|.++.  + -.+.+.+|.|.-|
T Consensus       265 ------W~~~~~~~~~~~n~~~i~f~~~~--~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  265 ------WQKDRVGENVPSNLYRIVFVNPD--K-GFVLGQDGVLLRY  301 (302)
T ss_dssp             -------EE-GGGTTSSS---EEEEEETT--E-EEEE-STTEEEEE
T ss_pred             ------ceECccccCCCCceEEEEEcCCC--c-eEEECCCcEEEEe
Confidence                  11222222223467888898765  2 3344567877655

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.20  E-value=3.3  Score=38.00  Aligned_cols=125  Identities=11%  Similarity=0.029  Sum_probs=75.1

Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec----CCEEEEEeecCe
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNE  261 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~  261 (346)
                      +...|+.|..||.|.+|.+...-.............   .......|...+. -......++++    .+++|+++....
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~---~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~  188 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG---FSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE  188 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc---cccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce
Confidence            567889999999999999876432222220000000   0001122333333 23367788876    568888888888


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC---c-ceEEEEcCCCcEEEEEc
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH---Y-NAAAIGNREGKIFVWEL  320 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~-~~l~~~~~dg~i~iwd~  320 (346)
                      |.||-........      ....-..+...|.+++|-++..   + ..|++++-.|.+.+|++
T Consensus       189 VTVFaf~l~~~r~------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  189 VTVFAFALVDERF------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEEecccccc------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888766532110      0111112556789999988762   1 27888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.86  E-value=3.4  Score=34.53  Aligned_cols=264  Identities=14%  Similarity=0.065  Sum_probs=114.5

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCC---CCcEEEEeec-C-
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVD---GIPFLVAGGI-N-  107 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-d-  107 (346)
                      ..+.|+|.|    ++++|++-..+.|.+++ ..+.....+....  ..........+++.  |+   +. +|..... . 
T Consensus         3 ~P~~~a~~p----dG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~--p~f~~n~-~lYv~~t~~~   74 (331)
T PF07995_consen    3 NPRSMAFLP----DGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFH--PDFASNG-YLYVYYTNAD   74 (331)
T ss_dssp             SEEEEEEET----TSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE---TTCCCC--EEEEEEEEE-
T ss_pred             CceEEEEeC----CCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceec--cccCCCC-EEEEEEEccc
Confidence            357899999    78899888755598888 4444322222221  11233455556655  63   22 3333332 1 


Q ss_pred             -------CeEEEEEccCc-------c-eeeeecc---CCCceEEEEEeCCCCceEEEeeCCCC---EEEEecCCCeeEEE
Q 019117          108 -------GIIRVIDVSNE-------K-LHKSFVG---HGDSINEIRTQPLKPSLVVSASKDES---VRLWNVQTGICILI  166 (346)
Q Consensus       108 -------g~i~iwd~~~~-------~-~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~~  166 (346)
                             ..|.-|....+       + .+..+..   ....-..|.|.| ++.+.++.+..+.   ..-.+...++.++.
T Consensus        75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri  153 (331)
T PF07995_consen   75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRI  153 (331)
T ss_dssp             TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred             CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEe
Confidence                   23444444333       1 1122222   223446799999 7777776655433   00000011222211


Q ss_pred             eccc--------------------CCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeeeecee----ecCC-
Q 019117          167 FAGA--------------------GGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFT----WTDL-  220 (346)
Q Consensus       167 ~~~~--------------------~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~----~~~~-  220 (346)
                      -...                    .++.. ...++|+|..+.++++= +.++.=.|.-+..+...--....    .... 
T Consensus       154 ~~dG~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~  232 (331)
T PF07995_consen  154 DPDGSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP  232 (331)
T ss_dssp             ETTSSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-
T ss_pred             cccCcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc
Confidence            1100                    01222 34789998325554432 22332222223322110000000    0000 


Q ss_pred             -CCCCCCccceeceEEEeecccceEEEEec---------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc
Q 019117          221 -PSKFPTKYVQFPVFIASVHSNYVDCNRWL---------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC  290 (346)
Q Consensus       221 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  290 (346)
                       ...........|...+..| ..+..+.|.         +.++++.-..+.|....++....     .......+.....
T Consensus       233 ~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~  306 (331)
T PF07995_consen  233 IGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS-----VTEEEEFLGGFGG  306 (331)
T ss_dssp             ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE-----EEEEEEECTTSSS
T ss_pred             cccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC-----ccceEEccccCCC
Confidence             0001111222355555544 445555554         34566555567787777764421     0001111223344


Q ss_pred             CeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          291 DIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       291 ~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      .+..+++.|||  .++++-..+|.|+
T Consensus       307 r~~~v~~~pDG--~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  307 RPRDVAQGPDG--ALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEETTS--EEEEEE-TTTTEE
T ss_pred             CceEEEEcCCC--eEEEEECCCCeEe
Confidence            78999999999  5666666788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=2.2  Score=32.27  Aligned_cols=103  Identities=12%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             CccEEEEEcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117           48 YFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF  124 (346)
Q Consensus        48 ~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  124 (346)
                      ++.++.+.+.-+   |++||+.+++.+....--.....++.++.+       |..+-.-.-.+|.-..+|.++.+.+..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-------gd~~y~LTw~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-------GDYFYQLTWKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-------cceEEEEEeccceeEEEChHHhhhhccc
Confidence            467777776544   999999988876544321111122222211       2213333445788889999888877766


Q ss_pred             ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117          125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus       125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      . ..+.-..++-   ++..|+.++...++..-|.++.
T Consensus       128 ~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         128 S-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             c-cCCcceeeec---CCcceEeeCCceEEEecCHHHh
Confidence            5 3444456654   3344555554556766666543

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=93.59  E-value=6.6  Score=37.03  Aligned_cols=75  Identities=9%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             ccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC----ccccccccc-----cC-CCcCeeEEEEeecCCcceEE
Q 019117          240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE----GTADILQKY-----PV-PECDIWFIKFSCDFHYNAAA  307 (346)
Q Consensus       240 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~-----~~-~~~~v~~~~~s~~~~~~~l~  307 (346)
                      .+.|.++...  +.+++..-.||+|.++|-.+.+.....    .....+..+     .. ....+..++|||.+  ..++
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~--c~~v  336 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM--CSLV  336 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc--ceEE
Confidence            3557777765  778999999999999999888644333    111111111     10 11245568999998  5788


Q ss_pred             EEcCCCcEE
Q 019117          308 IGNREGKIF  316 (346)
Q Consensus       308 ~~~~dg~i~  316 (346)
                      .-..+|.+.
T Consensus       337 ~~~~~~~~~  345 (753)
T PF11635_consen  337 QIDEDGKTK  345 (753)
T ss_pred             EEecCCCce
Confidence            888888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.53  E-value=4.6  Score=35.09  Aligned_cols=143  Identities=12%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             CCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC------CcEEEEEecCCeEEEEEccccceeee
Q 019117          140 KPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD------IYRIASCGMDNTVKIWSMKEFWTYVE  212 (346)
Q Consensus       140 ~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~  212 (346)
                      +.+++ ..|+....++-.|++.|+.+..+.   -|...  -+.|.|..      ...-+.|-.+..|.-.|.+....   
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~---~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---  549 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWD---LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---  549 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEee---cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC---
Confidence            44444 455666678888899999998887   34433  46666621      12233454555665556655110   


Q ss_pred             eceeecCCCCCCCCccceeceEEEeecccceEEEEec------CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc
Q 019117          213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP  286 (346)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  286 (346)
                                         .+ ......+.++--.|+      ..++++++..|-|++||--..+         ....++
T Consensus       550 -------------------Ki-~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---------AKtalP  600 (776)
T COG5167         550 -------------------KI-KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---------AKTALP  600 (776)
T ss_pred             -------------------ce-eeeeehhccccccccccccccCceEEEecCCCceeeehhhcch---------hhhcCc
Confidence                               00 111112222222222      6799999999999999965433         223344


Q ss_pred             CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      +-...|..+..+.+|.  ++++.+. ..+.+-|+.-
T Consensus       601 ~lG~aIk~idvta~Gk--~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         601 GLGDAIKHIDVTANGK--HILATCK-NYLLLTDVPI  633 (776)
T ss_pred             ccccceeeeEeecCCc--EEEEeec-ceEEEEeccc
Confidence            5566888999999994  4444433 4677777653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.22  E-value=3.8  Score=33.13  Aligned_cols=217  Identities=12%  Similarity=0.065  Sum_probs=115.1

Q ss_pred             EEcCCCCcEEEEeecCCeEEEEEcc------Cc-ceeeeecc-----CCCceEEEEEeCCCC------------ceEEEe
Q 019117           92 ACNVDGIPFLVAGGINGIIRVIDVS------NE-KLHKSFVG-----HGDSINEIRTQPLKP------------SLVVSA  147 (346)
Q Consensus        92 ~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~~l~s~  147 (346)
                      +++|.+. +-++....+...+||..      .. .++-++..     .....+.+.|+. ..            ..++.+
T Consensus        29 a~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        29 SYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             EecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeEEEE
Confidence            3448786 77777778899999986      12 23334442     234678888875 22            236778


Q ss_pred             eCCCCEEEEecCCCee-----EEEecccCCCCcce-EEEEecCC-CCcEEEE-EecCCeEEEEEccccceeeeeceeecC
Q 019117          148 SKDESVRLWNVQTGIC-----ILIFAGAGGHRNEV-LSVDFHPS-DIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTD  219 (346)
Q Consensus       148 ~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v-~~~~~~~~-~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~  219 (346)
                      ++||+|.-|...-+..     ...+..  ...+.| ..+++... .+.+|+. --..++|.+||-.-.+..+...+....
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~~~~d~--s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAEIVVDA--SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             eCCceEEeecCcCCcccccccEEEEcc--CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            9999999998643222     122221  122334 45555531 2344444 455789999986653322222222211


Q ss_pred             CCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEE
Q 019117          220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFI  295 (346)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~  295 (346)
                      .+..+    ...-+..+.. .-.|+-..-+  .+.=+.+..-|.|-+||+...          .++++.  +.-...+.|
T Consensus       185 iPagy----APFnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNaPWG~  249 (336)
T TIGR03118       185 LPAGY----APFNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNAPWGL  249 (336)
T ss_pred             CCCCC----CCcceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccCCcee
Confidence            12111    1111111110 0001111111  222334444578999998754          344442  233456778


Q ss_pred             EEeecCC----cceEEEEcCCCcEEEEEcCCCCcce
Q 019117          296 KFSCDFH----YNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       296 ~~s~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      +..|-.-    +.+|+.--.||+|..||..+++.+-
T Consensus       250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g  285 (336)
T TIGR03118       250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG  285 (336)
T ss_pred             eeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence            8766321    1567766679999999998887443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.13  E-value=0.024  Score=51.40  Aligned_cols=95  Identities=19%  Similarity=0.263  Sum_probs=59.8

Q ss_pred             CCeEEEEEccC--ccee-----eeeccCCCceEEEEEeCC--CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          107 NGIIRVIDVSN--EKLH-----KSFVGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       107 dg~i~iwd~~~--~~~~-----~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      -|.+.|||++-  |+..     .........+.-|.|.|-  +.-++..+-.++.+++..+..... ..++   +|...+
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r---sHs~~~  227 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR---SHSQRV  227 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH---hcCCCc
Confidence            46788998753  3322     222223344556666552  445677777888998887764432 3344   566666


Q ss_pred             EEEE-----------ecCCCCcEEEEEecCCeEEEEEccc
Q 019117          178 LSVD-----------FHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       178 ~~~~-----------~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ..++           ++| +|..++.+..||.+++|.+.-
T Consensus       228 ~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  228 TDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             ccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee
Confidence            5544           567 888888888888888887654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.13  E-value=1.1  Score=34.69  Aligned_cols=65  Identities=12%  Similarity=0.203  Sum_probs=47.2

Q ss_pred             CCceEEEeeCCCCEEEEecCCCeeEEEecc----cC-------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          140 KPSLVVSASKDESVRLWNVQTGICILIFAG----AG-------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      .++++++-..+|.+++||+.+++.+..-..    ..       .....|..+.++. +|.-+++-+ +|....|+..-
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecccc
Confidence            567888999999999999998876543310    11       2456788888886 777676654 57888888776

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.07  E-value=1.4  Score=42.49  Aligned_cols=158  Identities=7%  Similarity=0.039  Sum_probs=84.5

Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCC-------ceEEEeeCCCCEEEEecCCCeeE---------EEec
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-------SLVVSASKDESVRLWNVQTGICI---------LIFA  168 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~iwd~~~~~~~---------~~~~  168 (346)
                      +.|+.+.+|+.+++.....+.+-...|..|..-.-..       ++++..+.--.|.++-+...+..         ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4578999999999877777776666666655422121       23333333345666544321111         1111


Q ss_pred             ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc--ceeeeeceeecCCCCCCCCccceeceEEE-eecccceEE
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF--WTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDC  245 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  245 (346)
                         .....|+++.... +|+.+++| .||  .+|.+.-.  .....+.+..............+ .+..+ ..+.++|..
T Consensus       176 ---~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP-s~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  176 ---VDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP-SLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             ---cCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh-hhhcCCCCCCCccee
Confidence               2356788888664 77766655 566  45554321  00000000000000000000000 02222 367788999


Q ss_pred             EEec--CCEEEEEeecCeEEEEcCCCC
Q 019117          246 NRWL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       246 ~~~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      +..+  -+.+.+-+..++|.+||+...
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccCC
Confidence            9988  568888899999999999874

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.78  E-value=0.49  Score=39.98  Aligned_cols=165  Identities=10%  Similarity=0.062  Sum_probs=95.1

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCcee-eeEeeeecCCCccceE-EEEEEEcCCCCcEEEEeec
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVI-AALQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~  106 (346)
                      +..-.+.|..+-..|    +|+.|..-+...+.++++.+.... +.+...........|. .+...  ..|. .+..++.
T Consensus       216 L~~~~~~v~qllL~P----dg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL--~Gg~-SLLv~~~  288 (733)
T COG4590         216 LSVPFSDVSQLLLTP----DGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL--SGGF-SLLVVHE  288 (733)
T ss_pred             cCCCccchHhhEECC----CCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH--hCce-eEEEEcC
Confidence            444456677777888    788888887777888887764421 1111110000011111 11111  3344 7888888


Q ss_pred             CCeEEEE-EccCc-c----eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          107 NGIIRVI-DVSNE-K----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       107 dg~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      ||.|.-| |...+ .    .++.++-...++..+.-.. +.+-+++-+..|++.++.....+.+..-.    .-..+.-+
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~  363 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLV  363 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh----hhcCccee
Confidence            9988887 44322 1    2222222223343333222 45567888888999888765444433222    33466778


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      +++| ++.++++-. .|.|+++.+.+.
T Consensus       364 ~~Sp-~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         364 AMSP-NQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             eeCc-ccchheeec-CCceEEEEecCC
Confidence            9999 777777643 578999998873

>PRK10115 protease 2; Provisional

Probab=92.67  E-value=8.7  Score=35.84  Aligned_cols=110  Identities=12%  Similarity=0.085  Sum_probs=59.0

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCC-c-----EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGN-R-----VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-  107 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~-~-----v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-  107 (346)
                      .+..+.++|    ++++||.+.+. +     +++.|+.++..+....      .... ..++|.  +|++.++++...+ 
T Consensus       128 ~l~~~~~Sp----dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i------~~~~-~~~~w~--~D~~~~~y~~~~~~  194 (686)
T PRK10115        128 TLGGMAITP----DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL------DNVE-PSFVWA--NDSWTFYYVRKHPV  194 (686)
T ss_pred             EEeEEEECC----CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc------cCcc-eEEEEe--eCCCEEEEEEecCC
Confidence            356677887    77877776543 2     7888887665322111      1111 336676  7777344544322 


Q ss_pred             ----CeEEEEEccCc--ceeeeeccCCCceE-EEEEeCCCCceEEEee---CCCCEEEEec
Q 019117          108 ----GIIRVIDVSNE--KLHKSFVGHGDSIN-EIRTQPLKPSLVVSAS---KDESVRLWNV  158 (346)
Q Consensus       108 ----g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~---~d~~i~iwd~  158 (346)
                          ..|..+++.++  +....+........ .+..+. ++.+++..+   .++.+.+++.
T Consensus       195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEEC
Confidence                36778888877  33334443333333 223333 455444333   3457888884

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.63  E-value=4.4  Score=32.37  Aligned_cols=101  Identities=12%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             CCCCcEEEEeecCCe-EEEEEccCcceeeeeccCCCc--eEEEEEeCCCCceEEEeeCC-----CCEEEEecCCC-eeEE
Q 019117           95 VDGIPFLVAGGINGI-IRVIDVSNEKLHKSFVGHGDS--INEIRTQPLKPSLVVSASKD-----ESVRLWNVQTG-ICIL  165 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~-~~~~  165 (346)
                      |.-..-++.+-.-|+ ..++|.+..+...++...++.  ---=.|+| ++.+|...-.|     |.|-|||.+.+ +.+.
T Consensus        77 p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvg  155 (366)
T COG3490          77 PALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVG  155 (366)
T ss_pred             CCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccccceec
Confidence            444334555544443 557888877766555432221  11224889 88888876544     78999998743 3445


Q ss_pred             EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117          166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  202 (346)
                      ++.   .|.-....+.+.+ +++.++.+.  |-|..-
T Consensus       156 E~~---t~GiGpHev~lm~-DGrtlvvan--GGIeth  186 (366)
T COG3490         156 EFS---THGIGPHEVTLMA-DGRTLVVAN--GGIETH  186 (366)
T ss_pred             ccc---cCCcCcceeEEec-CCcEEEEeC--Cceecc
Confidence            555   6777778899998 888887764  445444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.52  E-value=3.8  Score=31.30  Aligned_cols=151  Identities=15%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             EEEEeecCCeEEEEEccC--cceeeeeccCCCceEEEEEeCCCCceEEEeeCCC------CEEEE-ecCC----CeeEE-
Q 019117          100 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------SVRLW-NVQT----GICIL-  165 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw-d~~~----~~~~~-  165 (346)
                      .|..+...+.|.+|++.+  .+....+.. -+.|..+.++. .+++++|--.+.      .+++| |++.    .+++. 
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            454445578899999883  345566663 47899999999 889999864432      45554 2221    11111 


Q ss_pred             Eecc-c-----------------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          166 IFAG-A-----------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       166 ~~~~-~-----------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                      .+.. .                 -.-...+.+++..|..|++++.+  ++++.+|.+....... ..+           .
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~-~~~-----------~  173 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQS-EKF-----------S  173 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEec-ccc-----------c
Confidence            1110 0                 01345678888888677765543  4689999887622110 000           0


Q ss_pred             cceeceEEEeecccc-eEEEEecCCEEEEEeecCeEEEEcC
Q 019117          228 YVQFPVFIASVHSNY-VDCNRWLGDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~-i~~~~~~~~~l~~~~~d~~i~iwd~  267 (346)
                      ........+..|.+. ...+++.++++|..+.. .++++.+
T Consensus       174 ~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl  213 (215)
T PF14761_consen  174 FLDFERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL  213 (215)
T ss_pred             EEechhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence            001111111222222 45677778888887654 4666544

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.48  E-value=4.9  Score=35.08  Aligned_cols=28  Identities=21%  Similarity=0.170  Sum_probs=20.7

Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  203 (346)
                      -.|..+..++ .|..++-.|.+|.+.++=
T Consensus       104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  104 FEVYQVLLSP-TGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEEecC-CCceEEEecCCeeEEEEc
Confidence            3466777887 788888888888776654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.40  E-value=9.4  Score=35.62  Aligned_cols=77  Identities=17%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEecCC----------Cee---EEEecc-----cCCCCcceEEEEecCCC--Cc
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GIC---ILIFAG-----AGGHRNEVLSVDFHPSD--IY  188 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~---~~~~~~-----~~~~~~~v~~~~~~~~~--~~  188 (346)
                      -.|..|.++| ++.+++..|..| |.|-.+..          ++.   .+.+..     ...+...|..+.|+|.+  +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4688999999 888888777654 55555531          111   111110     01345688999999942  57


Q ss_pred             EEEEEecCCeEEEEEcccc
Q 019117          189 RIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~  207 (346)
                      .|+.-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            7888889999999999763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.21  E-value=4.9  Score=34.41  Aligned_cols=122  Identities=10%  Similarity=0.022  Sum_probs=72.7

Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CC
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD  251 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  251 (346)
                      ..++|.++.|++ +.+.++.--.+.+|.+++....+..                   .....+....+..|....|. ..
T Consensus        65 d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~-------------------l~~~~~ck~k~~~IlGF~W~~s~  124 (657)
T KOG2377|consen   65 DKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQ-------------------LEYTQECKTKNANILGFCWTSST  124 (657)
T ss_pred             CCCceeEEEecc-CcceEEEEecCceEEEEecCCCchh-------------------hHHHHHhccCcceeEEEEEecCe
Confidence            567999999999 8899999999999999988441110                   01111222334457777777 43


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      -++.... ..+-+|.....+.        .++..+.+...|.=-.|+++..--+|+++-..+.+.=+.+.++
T Consensus       125 e~A~i~~-~G~e~y~v~pekr--------slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  125 EIAFITD-QGIEFYQVLPEKR--------SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             eEEEEec-CCeEEEEEchhhh--------hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            4444433 3467777665442        3444555666777778888874222333324444444555444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.21  E-value=0.92  Score=24.02  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG  126 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  126 (346)
                      |+++.++++...++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            45663444455688999999988887777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.88  E-value=4.9  Score=32.51  Aligned_cols=97  Identities=9%  Similarity=0.128  Sum_probs=60.6

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee------CCCCEEEEecCCCeeEEEecc-c-CCCCcceEE
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG-A-GGHRNEVLS  179 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~  179 (346)
                      ..|++||..+.+-...-.+-.+.|+++.|.. +.++++.|.      ....+..||+.+.. ...+.. . ..-.++|..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence            4699999887665444444668899999986 667777764      45678889987654 333331 0 123578888


Q ss_pred             EEecCCCCc-EEEEEe-cC--CeEEEEEccc
Q 019117          180 VDFHPSDIY-RIASCG-MD--NTVKIWSMKE  206 (346)
Q Consensus       180 ~~~~~~~~~-~l~s~~-~d--~~i~iwd~~~  206 (346)
                      +.+...+.. +.+.|. .+  ..|..||=..
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            887543443 444443 23  3466675544

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.87  E-value=6.5  Score=34.37  Aligned_cols=75  Identities=12%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEEc---------cCcceeee---e--------ccCCCceEEEEEeCCC--CceEEEee
Q 019117           91 WACNVDGIPFLVAGGINGIIRVIDV---------SNEKLHKS---F--------VGHGDSINEIRTQPLK--PSLVVSAS  148 (346)
Q Consensus        91 ~~~~~~~~~~l~~~~~dg~i~iwd~---------~~~~~~~~---~--------~~~~~~v~~~~~~~~~--~~~l~s~~  148 (346)
                      +..++.|. .++-.+.+|.+.++=.         +.++.+-.   +        ....-.+..++|+|+.  +..|..-+
T Consensus       109 vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~  187 (741)
T KOG4460|consen  109 VLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT  187 (741)
T ss_pred             EEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEe
Confidence            34458898 8888888887665431         23322111   1        1112356788999954  56788888


Q ss_pred             CCCCEEEEecCCCeeEEE
Q 019117          149 KDESVRLWNVQTGICILI  166 (346)
Q Consensus       149 ~d~~i~iwd~~~~~~~~~  166 (346)
                      .|..+++||+.....+..
T Consensus       188 sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  188 SDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             cCcEEEEEecCCcchhhc
Confidence            899999999986655533

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.76  E-value=3.3  Score=28.92  Aligned_cols=86  Identities=8%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee---cCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                      .|++++.-|.|.|.+.......... ....+..+.. ...|++++-.+   +.....|+.|+.. .|..||+....-+..
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFY   88 (136)
T ss_pred             eEEEEecCCEEEEECCCcccccccc-ccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhh
Confidence            6888888999999998765422111 1112222222 34677775544   4444678888764 688999999887777


Q ss_pred             eeeeeeEEEEEe
Q 019117          329 ARLICFSLHVKY  340 (346)
Q Consensus       329 ~~~~~~~~~~~~  340 (346)
                      ..++..++++.+
T Consensus        89 ke~~DGvn~i~~  100 (136)
T PF14781_consen   89 KEVPDGVNAIVI  100 (136)
T ss_pred             hhCccceeEEEE
Confidence            777766666655

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.42  E-value=13  Score=35.26  Aligned_cols=63  Identities=13%  Similarity=0.154  Sum_probs=45.6

Q ss_pred             cCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          249 LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       249 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +|+++|.  -...|++|+..+.+         .++.-..+..++..+...-.+  ..+++|..-+++.+-.....+
T Consensus       839 ngkllA~--In~~vrLye~t~~~---------eLr~e~~~~~~~~aL~l~v~g--deI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  839 NGKLLAG--INQSVRLYEWTTER---------ELRIECNISNPIIALDLQVKG--DEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             CCeEEEe--cCcEEEEEEccccc---------eehhhhcccCCeEEEEEEecC--cEEEEeeccceEEEEEEeccC
Confidence            3555554  45589999998875         455555566788888888888  689999888888776655544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.36  E-value=12  Score=34.86  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEecc----------CceeeeEeee------ecCCCccceEEEEEEEcC-C
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE----------GGVIAALQSY------VDEDKEESFYTVSWACNV-D   96 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~----------~~~~~~~~~~------~~~~~~~~v~~~~~~~~~-~   96 (346)
                      -.|..|.+||    +|.+||..|..+|.|..+-.          +......+.+      ........|..+.|.+.. +
T Consensus        85 f~v~~i~~n~----~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNP----TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             eeEEEEEECC----CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            3588899998    88999999999977766532          1111111111      111234466667776332 2


Q ss_pred             CCcEEEEeecCCeEEEEEccCcc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEK  119 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~  119 (346)
                      +. .|+.-..|+++++||+...+
T Consensus       161 ~~-~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DS-HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CC-eEEEEecCCEEEEEecCCCC
Confidence            45 88888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.32  E-value=6.8  Score=36.82  Aligned_cols=109  Identities=10%  Similarity=0.007  Sum_probs=68.9

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCc--------eEEEEEeC---------------CCCceEEEeeCCCCEEEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--------INEIRTQP---------------LKPSLVVSASKDESVRLW  156 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~s~~~d~~i~iw  156 (346)
                      .|+.++.++.|.-.|..+|+.+..+......        ...+.+..               .....++.++.|+.|.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            6777788899999999999988777532211        12233321               023477888889999999


Q ss_pred             ecCCCeeEEEecccCCCCcceE-------------EEEecC-CCCcEEEEEec----------CCeEEEEEccccceeee
Q 019117          157 NVQTGICILIFAGAGGHRNEVL-------------SVDFHP-SDIYRIASCGM----------DNTVKIWSMKEFWTYVE  212 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~  212 (346)
                      |.++|+.+..+.    ..+.|.             .+.-.| -.+..++.|+.          +|.|+-+|.++++..-.
T Consensus       276 DA~TGk~~W~fg----~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       276 DADTGKLCEDFG----NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             ECCCCCEEEEec----CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            999999998774    222210             111111 01234555542          68899999999766444

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.00  E-value=6.9  Score=31.23  Aligned_cols=165  Identities=12%  Similarity=0.017  Sum_probs=84.3

Q ss_pred             ceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE-cccc
Q 019117          130 SINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS-MKEF  207 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~  207 (346)
                      .+.+.++++ ++..++... .++.-.+|-...+.......    ....+..-.|++ ++...+....+...+++. ....
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence            688999999 666555444 23333444444444343332    223677788998 666666655555666653 2221


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe---ecCeEEEEcCCCCCCCCCCcccccc
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                      ...                   ...+... .-...|+.+.++  |..++...   .++.|.+=-+..............+
T Consensus        99 ~~~-------------------~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~  158 (253)
T PF10647_consen   99 TGE-------------------PVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR  158 (253)
T ss_pred             cce-------------------eEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence            100                   0001111 111178889888  66665554   3577777655433221000011122


Q ss_pred             ccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEE-EEcCC
Q 019117          283 QKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFV-WELQS  322 (346)
Q Consensus       283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~i-wd~~~  322 (346)
                      .........+..++|.+++  .+++.+. .++.+.. .....
T Consensus       159 ~~~~~~~~~v~~v~W~~~~--~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  159 RVAPPLLSDVTDVAWSDDS--TLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             EecccccCcceeeeecCCC--EEEEEeCCCCCceeEEEEccC
Confidence            2222234588999999998  4555444 3443433 44433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.87  E-value=3  Score=36.19  Aligned_cols=58  Identities=22%  Similarity=0.383  Sum_probs=45.8

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ  159 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  159 (346)
                      ++|+++..|-|++||--.-+....+++-...|..+.... ++.++++.+. .++.+-|++
T Consensus       575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEeec-ceEEEEecc
Confidence            899999999999999655555566788888999999998 6666665554 577787775

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.77  E-value=7.5  Score=31.30  Aligned_cols=153  Identities=10%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             CCceEEEEEEeecCCCccEEEEEc-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      .+-+.++.++.      ++...+. +.+++|+|+.+......+..+...     -+...|.  -.|+ +...+..+.-+.
T Consensus        86 ~~l~~Dv~vse------~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-----gyaygv~--vsGn-~aYVadlddgfL  151 (370)
T COG5276          86 RDLFADVRVSE------EYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-----GYAYGVY--VSGN-YAYVADLDDGFL  151 (370)
T ss_pred             hhhhheeEecc------cEEEEEcCCCceEEEeccCCCCcceeccccCC-----ceEEEEE--ecCC-EEEEeeccCcEE
Confidence            44566788874      4444444 445999999876655544433211     1223344  4477 888888666677


Q ss_pred             EEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          112 VIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       112 iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +.|+.+.+   ....+......-..++.+   +++-..+..|+-+.+-|+.+...-..+... .....+.++..++ +..
T Consensus       152 ivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsd-nr~  226 (370)
T COG5276         152 IVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSD-NRA  226 (370)
T ss_pred             EEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecC-Cee
Confidence            88887654   334444445555677775   466677778899999999755322222110 1334778888876 555


Q ss_pred             EEEEEecCCeEEEEEccc
Q 019117          189 RIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~  206 (346)
                      +++..+  --+.+-|...
T Consensus       227 y~vvy~--egvlivd~s~  242 (370)
T COG5276         227 YLVVYD--EGVLIVDVSG  242 (370)
T ss_pred             EEEEcc--cceEEEecCC
Confidence            444433  2355555554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.68  E-value=13  Score=34.06  Aligned_cols=191  Identities=14%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-cCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  186 (346)
                      -.|+|++. +|+.+..+.-..+.+-.+.|+.  ...|+....+|++.+|++. |+.+..... .......|..+.+.. +
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~  138 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-N  138 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-C
Confidence            45888885 4666655543344788999986  4567777899999999986 444433211 012233455455543 5


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEc
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE  266 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd  266 (346)
                      |-.+++.+ +..+.+-+.................+        .........|..        ...++-....--..++.
T Consensus       139 GVavlt~~-g~v~~i~~~~~~~~~~~~diP~~~~~--------~~~Wt~~~~~~~--------~~~ll~v~~~v~~~~~q  201 (829)
T KOG2280|consen  139 GVAVLTVS-GQVILINGVEEPKLRKMPDIPYNELP--------KSCWTVFQPHRQ--------STILLDVDVAVGLHICQ  201 (829)
T ss_pred             ceEEEecC-CcEEEEcCCCcchhhhCCCCCCccCC--------CcceeEecCCCc--------ceeEEeechhhhhcccc
Confidence            54444443 22333333333111000000000000        000111111111        11111111000011222


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      .....        .....+......+..+..||+.  ++|+--..+|.|.+-+....+....+.
T Consensus       202 ~~~~~--------~q~~~~~~~~~~~~ki~VS~n~--~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  202 VEESR--------VQLHALSWPNSSVVKISVSPNR--RFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             eeccc--------ccccccCCCCceEEEEEEcCCc--ceEEEEecCCcEEEEecchhhhhhccC
Confidence            22211        1223333334578888999988  688888889999888877665544444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.57  E-value=1.9  Score=38.96  Aligned_cols=69  Identities=19%  Similarity=0.387  Sum_probs=42.2

Q ss_pred             EEEEeecCCeEEEEEccC----cceee-----------eecc-----------CCCceEEEEEeC---CCCceEEEeeCC
Q 019117          100 FLVAGGINGIIRVIDVSN----EKLHK-----------SFVG-----------HGDSINEIRTQP---LKPSLVVSASKD  150 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~---~~~~~l~s~~~d  150 (346)
                      .++.+..||.+.......    +....           .+.+           ....+..+++++   .+..++++.+.|
T Consensus       160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D  239 (547)
T PF11715_consen  160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD  239 (547)
T ss_dssp             BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence            677788899888877654    11110           0000           122344455543   256789999999


Q ss_pred             CCEEEEecCCCeeEEEec
Q 019117          151 ESVRLWNVQTGICILIFA  168 (346)
Q Consensus       151 ~~i~iwd~~~~~~~~~~~  168 (346)
                      +++++||+.+++++....
T Consensus       240 ~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  240 HTLRIWSLETGQCLATID  257 (547)
T ss_dssp             SEEEEEETTTTCEEEEEE
T ss_pred             CeEEEEECCCCeEEEEec
Confidence            999999999999977654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.12  E-value=18  Score=33.28  Aligned_cols=50  Identities=16%  Similarity=0.312  Sum_probs=37.7

Q ss_pred             CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       151 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      -.|+|++.. |+.+..+.   ...+.+-.+.|+  +...|++...+|++++|++-.
T Consensus        64 ~~I~If~~s-G~lL~~~~---w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRIL---WKHGELIGMGWS--DDEELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEecc-ccchHHHH---hcCCCeeeeccc--CCceEEEEeccceEEEeecch
Confidence            468888874 77776665   234478899998  445577778999999999876

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.45  E-value=18  Score=35.67  Aligned_cols=166  Identities=17%  Similarity=0.199  Sum_probs=89.1

Q ss_pred             eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe--------cCCCCcEEEEEecCCeEEEE
Q 019117          131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF--------HPSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~s~~~d~~i~iw  202 (346)
                      -..+-+-|.=+..-+|  -|..+.+|+.+++.....+.   +....|..+..        -| .-++++.-+.--.|.++
T Consensus        81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d---~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~il  154 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYD---GLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVIL  154 (1311)
T ss_pred             eeeeccchhhcceEEE--eCCeEEEEEcCCCCcccccc---chhhhheeeeeecCCCCcchh-hhheeEEecccceEEEE
Confidence            3444455523333333  36789999999987777777   45556655543        22 22233333334456665


Q ss_pred             EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCC-------
Q 019117          203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS-------  273 (346)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-------  273 (346)
                      -+.-........        .      -....++....-.|.|+...  |+.+.+| .||  .+|.+.-....       
T Consensus       155 gV~~~~~~~~~~--------~------f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc  217 (1311)
T KOG1900|consen  155 GVSFDEFTGELS--------I------FNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRC  217 (1311)
T ss_pred             EEEeccccCccc--------c------cccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhccc
Confidence            544311111000        0      00113444456667888854  5555554 555  44443211100       


Q ss_pred             ----CCC-----cccccccccc-CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          274 ----PGE-----GTADILQKYP-VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       274 ----~~~-----~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                          ...     -.+. +-.+. .+..+|..+......  .++.+-++.|.|.+||+..
T Consensus       218 ~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  218 RKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccCchhHHHHhhhh-hhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence                000     0011 12222 456688888887766  7999999999999999987

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.81  E-value=14  Score=30.23  Aligned_cols=189  Identities=8%  Similarity=-0.029  Sum_probs=0.0

Q ss_pred             CEEEEecCCCeeEEEecccC---CCCcceEEEEecCCCC-----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117          152 SVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDI-----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  223 (346)
Q Consensus       152 ~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (346)
                      .|.+||+.+++.++.+....   ...+.+..+.+...++     ...++=...+-|.++|+.+.+............+..
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc


Q ss_pred             CCCccceeceEEEeecccceEEEEec-----CCEEE----EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeE
Q 019117          224 FPTKYVQFPVFIASVHSNYVDCNRWL-----GDFIL----SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  294 (346)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  294 (346)
                      ......+.......+    +..++.+     ++.|.    ++..--.|..=.++.............+..+-........
T Consensus       115 ~~~~i~g~~~~~~dg----~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDG----IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTS----EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECE
T ss_pred             cceeccCceEecCCC----ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCce


Q ss_pred             EEEeecCCcceEEEEcCCCcEEEEEcCC----CCcceeeeeee---eEEEEEecC--CCCC
Q 019117          295 IKFSCDFHYNAAAIGNREGKIFVWELQS----SPPVLIARLIC---FSLHVKYNP--QSVY  346 (346)
Q Consensus       295 ~~~s~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~---~~~~~~~sp--dg~~  346 (346)
                      ++++++|  .++.+--..+.|..|+..+    ........-+.   .+..+.+.+  +|.+
T Consensus       191 ~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  191 MAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             EEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred             EEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.58  E-value=14  Score=29.94  Aligned_cols=140  Identities=11%  Similarity=0.038  Sum_probs=87.3

Q ss_pred             EEEEeecCCeEEEEEccCcceee---eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGH  173 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~  173 (346)
                      +...+..+.-++|.|+.+...-.   .+. ..+.-.++..   .+++...+..|.-+.+.|+.+.+.   ...+.   ..
T Consensus        98 yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~lagrya---~~  170 (370)
T COG5276          98 YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA---LP  170 (370)
T ss_pred             EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCceeeeeec---cC
Confidence            77788888889999998765322   222 2244455555   567888877666677888875533   22332   23


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-ceEEEEecCCE
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWLGDF  252 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~  252 (346)
                      ...-..++.+   +++...+..|+-+.+-|+.+..                      .|...-....+ .+.++..++++
T Consensus       171 ~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~----------------------sPvli~~~n~g~g~~sv~vsdnr  225 (370)
T COG5276         171 GGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH----------------------SPVLIGSYNTGPGTYSVSVSDNR  225 (370)
T ss_pred             CCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC----------------------CCeEEEEEecCCceEEEEecCCe
Confidence            3333556664   4566667788899999998832                      23333333333 67777777776


Q ss_pred             EEEEeecCeEEEEcCCCCC
Q 019117          253 ILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~  271 (346)
                      ....-.+.-+.+-|..+.+
T Consensus       226 ~y~vvy~egvlivd~s~~s  244 (370)
T COG5276         226 AYLVVYDEGVLIVDVSGPS  244 (370)
T ss_pred             eEEEEcccceEEEecCCCC
Confidence            6666566667777776655

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.49  E-value=7.6  Score=28.84  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=27.1

Q ss_pred             CCcceEEEEecCC-----CCcEEEEEecCCeEEEEEccc
Q 019117          173 HRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       173 ~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ....+..++|+|.     .+.+|++.+.++.|.+|....
T Consensus        84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3458999999982     356888889999999997764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.37  E-value=5  Score=36.30  Aligned_cols=27  Identities=11%  Similarity=0.162  Sum_probs=23.4

Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeee
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSF  124 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~  124 (346)
                      ..+|++.+.|+++|+||+.+++++.+.
T Consensus       230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  230 DTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            339999999999999999999986554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.21  E-value=2.4  Score=22.04  Aligned_cols=29  Identities=21%  Similarity=0.052  Sum_probs=17.5

Q ss_pred             CcCeeEEEEeecCCcceEEEEcCC--CcEEEE
Q 019117          289 ECDIWFIKFSCDFHYNAAAIGNRE--GKIFVW  318 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~~~~d--g~i~iw  318 (346)
                      ...-....|||||+ .++.+...+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence            34556778999995 344455555  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>smart00564 PQQ beta-propeller repeat

Probab=86.79  E-value=1.8  Score=21.35  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             ceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117          142 SLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus       142 ~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      ..++.++.+|.+..+|.++|+.+..+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            46777888999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.08  E-value=22  Score=30.93  Aligned_cols=29  Identities=10%  Similarity=0.111  Sum_probs=22.2

Q ss_pred             cceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117          241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  269 (346)
                      ..|..+...  .+.+++...++.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            348888887  67999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.59  E-value=36  Score=32.90  Aligned_cols=178  Identities=12%  Similarity=0.088  Sum_probs=96.4

Q ss_pred             eEEEEEccCcceeeeeccC----CCceEEEEEeCCCCc-eEEEeeC-----------CCCEEEEecC-CCeeEEEecccC
Q 019117          109 IIRVIDVSNEKLHKSFVGH----GDSINEIRTQPLKPS-LVVSASK-----------DESVRLWNVQ-TGICILIFAGAG  171 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~-~l~s~~~-----------d~~i~iwd~~-~~~~~~~~~~~~  171 (346)
                      .|++.|..+++.+..+.-.    .-.+..+.|+..+.. ++++|..           +|.++.|++- .++.+.-+. ..
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh-~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH-KT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee-cc
Confidence            5888888887766555422    224666777663333 3333321           3446666553 344333322 11


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  251 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  251 (346)
                      .-.+.|.+++  |..+ ++++ +....+++||+...+...                     ......-+..|+.+.+.+.
T Consensus       933 ~~~~~v~Ai~--~f~~-~~La-gvG~~l~~YdlG~K~lLR---------------------k~e~k~~p~~Is~iqt~~~  987 (1205)
T KOG1898|consen  933 EIPGPVGAIC--PFQG-RVLA-GVGRFLRLYDLGKKKLLR---------------------KCELKFIPNRISSIQTYGA  987 (1205)
T ss_pred             CCCccceEEe--ccCC-EEEE-ecccEEEEeeCChHHHHh---------------------hhhhccCceEEEEEeecce
Confidence            2344555554  5234 4444 345799999998732211                     1122224667888888888


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      .+++|..--.+.++..+....        .+..+...  .-.|+++.+-..   ..+|.+..=|.+.+-.+...
T Consensus       988 RI~VgD~qeSV~~~~y~~~~n--------~l~~fadD~~pR~Vt~~~~lD~---~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen  988 RIVVGDIQESVHFVRYRREDN--------QLIVFADDPVPRHVTALELLDY---DTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             EEEEeeccceEEEEEEecCCC--------eEEEEeCCCccceeeEEEEecC---CceeeccccCcEEEEECCCc
Confidence            888887766666655544321        22222221  124555544443   35777777777777766543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.42  E-value=17  Score=33.62  Aligned_cols=90  Identities=16%  Similarity=0.200  Sum_probs=54.4

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      .++..+|.|. .++.+..||.|++|++...+..+... ...+-..+.|..   .-|++...|..+.-|. ++|-..+.+.
T Consensus        18 ~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn---hgl~~~tsdrr~la~~-~dgvvqqqfd   91 (1636)
T KOG3616|consen   18 TAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN---HGLVTATSDRRALAWK-EDGVVQQQFD   91 (1636)
T ss_pred             eeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec---cceEEEeccchhheee-ccCcchhhcc
Confidence            4445558888 99999999999999986654422111 223334555643   3456666678888886 3454444443


Q ss_pred             ccCCCCcceEEEEecC
Q 019117          169 GAGGHRNEVLSVDFHP  184 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~  184 (346)
                      -.........++.+.|
T Consensus        92 yndqsekefss~~cdp  107 (1636)
T KOG3616|consen   92 YNDQSEKEFSSILCDP  107 (1636)
T ss_pred             ccchhhhhccceecCc
Confidence            2222344556666666

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.92  E-value=25  Score=30.47  Aligned_cols=258  Identities=9%  Similarity=0.010  Sum_probs=0.0

Q ss_pred             ecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEE--cCCCCcEEEEeecCCeEEEEEc-----
Q 019117           44 IDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC--NVDGIPFLVAGGINGIIRVIDV-----  115 (346)
Q Consensus        44 ~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~-----  115 (346)
                      ..+.....+++|+..| ++||+...+..... .......-+.+|..+....  +.... ..++.-.-..+.||.+     
T Consensus        32 ~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~-~~LaVLhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   32 NSPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSED-LQLAVLHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CCCCCccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCc-ceEEEecCCEEEEEEEEecCC


Q ss_pred             ----cCcceeeeeccC--CCceEEEEEeCCCC----ceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          116 ----SNEKLHKSFVGH--GDSINEIRTQPLKP----SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       116 ----~~~~~~~~~~~~--~~~v~~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                          .+.-.+..+..|  ......+.+-|.++    .+++.=+-||.+.+++-+.--....+.    ..--...+.+.+ 
T Consensus       110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp----~~llPgPl~Y~~-  184 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP----DFLLPGPLCYCP-  184 (418)
T ss_pred             CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC----CCCCCcCeEEee-


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEI  262 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i  262 (346)
                      ..+.+++++.+..+.-|...........................-.+..++..-+..+.-....   ..--+..-...++
T Consensus       185 ~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~L  264 (418)
T PF14727_consen  185 RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSL  264 (418)
T ss_pred             cCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceE


Q ss_pred             EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec------CCcceEEEEcCCCcEEEEE
Q 019117          263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD------FHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~~~l~~~~~dg~i~iwd  319 (346)
                      .+.+...           .+...+..+....+++.-.-      +....++.++.++.+.||.
T Consensus       265 f~l~~~G-----------~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~  316 (418)
T PF14727_consen  265 FCLKDNG-----------SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE  316 (418)
T ss_pred             EEEcCCC-----------eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.76  E-value=37  Score=32.35  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=49.0

Q ss_pred             CCCceEEEEEe---CC---CCceEEEeeCCCCEEEEecCC---------------CeeEEEecccCCCCcceEEEEecCC
Q 019117          127 HGDSINEIRTQ---PL---KPSLVVSASKDESVRLWNVQT---------------GICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       127 ~~~~v~~~~~~---~~---~~~~l~s~~~d~~i~iwd~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      -..+|..|+|.   ..   ...+|++=. ...+.|+...-               ..++..+.....-..+...++|+|.
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            45678888887   21   223444433 45566666211               1334444321123346778999997


Q ss_pred             CCcEEEEEecCCeEEEEEc
Q 019117          186 DIYRIASCGMDNTVKIWSM  204 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~  204 (346)
                      +...|+.....|...||++
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i  175 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDI  175 (765)
T ss_pred             ccceEEEEeccCcEEEEEe
Confidence            7889999999999999999

These proteins are found in fungi.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=84.29  E-value=39  Score=32.15  Aligned_cols=35  Identities=11%  Similarity=-0.066  Sum_probs=27.7

Q ss_pred             cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       290 ~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      ..|.++....-+  .+++..-.||+|.++|-.+.+.+
T Consensus       260 ~~V~si~~~~~~--~~v~~~~~DGsI~~~dr~t~~~~  294 (753)
T PF11635_consen  260 KRVVSITSPELD--IVVAFAFSDGSIEFRDRNTMKEL  294 (753)
T ss_pred             CeEEEEEecccC--cEEEEEEcCCeEEEEecCcchhh
Confidence            467777776666  68899999999999998887544

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.21  E-value=30  Score=30.78  Aligned_cols=111  Identities=22%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC---ceEEEEEeCCCCceEEEee--------------CCCCE
Q 019117           91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSAS--------------KDESV  153 (346)
Q Consensus        91 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~--------------~d~~i  153 (346)
                      +...++|. +++...  ..+..+|+. |+.+..+.....   .=.++...| ++++|+.+.              .|. |
T Consensus       153 ~~~l~nG~-ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~-I  226 (477)
T PF05935_consen  153 FKQLPNGN-LLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDV-I  226 (477)
T ss_dssp             EEE-TTS--EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-E-E
T ss_pred             eeEcCCCC-EEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCE-E
Confidence            33448887 554444  788899975 665554432221   135677778 778877776              233 5


Q ss_pred             EEEecCCCeeEEEecccCC----------------------CC--cceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117          154 RLWNVQTGICILIFAGAGG----------------------HR--NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  208 (346)
Q Consensus       154 ~iwd~~~~~~~~~~~~~~~----------------------~~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  208 (346)
                      ..+| .+|+.+..+....-                      ..  --++++.+.+.++.+++|+-.-..|...|.++.+
T Consensus       227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~  304 (477)
T PF05935_consen  227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK  304 (477)
T ss_dssp             EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred             EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence            5566 66766665432110                      00  2368899988566666666555578888866643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN02153 epithiospecifier protein

Probab=84.05  E-value=24  Score=29.62  Aligned_cols=23  Identities=9%  Similarity=0.148  Sum_probs=15.3

Q ss_pred             CCceEEEeeCC-----CCEEEEecCCCe
Q 019117          140 KPSLVVSASKD-----ESVRLWNVQTGI  162 (346)
Q Consensus       140 ~~~~l~s~~~d-----~~i~iwd~~~~~  162 (346)
                      ++.+++.|+.+     ..+.+||+.+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            45677777753     247788887654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=83.56  E-value=45  Score=32.32  Aligned_cols=134  Identities=13%  Similarity=0.045  Sum_probs=72.2

Q ss_pred             CCeEEEEEcc-Ccceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          107 NGIIRVIDVS-NEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       107 dg~i~iwd~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      +|.++.|++- .++.+.-+..  -.+.|  .+..| -...+++|- ...+++||+-..++++..... .....|..+.+.
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~-f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt~  985 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICP-FQGRVLAGV-GRFLRLYDLGKKKLLRKCELK-FIPNRISSIQTY  985 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccc--eEEec-cCCEEEEec-ccEEEEeeCChHHHHhhhhhc-cCceEEEEEeec
Confidence            3556666653 3443332221  22334  44556 333444443 468999999888777665531 135677888774


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeE
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEI  262 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i  262 (346)
                         +..++.|...-.+.++..+....                    +..+..-..-+..|+++.+- -+.++.+..-|.+
T Consensus       986 ---~~RI~VgD~qeSV~~~~y~~~~n--------------------~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi 1042 (1205)
T KOG1898|consen  986 ---GARIVVGDIQESVHFVRYRREDN--------------------QLIVFADDPVPRHVTALELLDYDTVAGADRFGNI 1042 (1205)
T ss_pred             ---ceEEEEeeccceEEEEEEecCCC--------------------eEEEEeCCCccceeeEEEEecCCceeeccccCcE
Confidence               45677776666666655444111                    11111222234456665554 5667777776766


Q ss_pred             EEEcCC
Q 019117          263 VLWEPK  268 (346)
Q Consensus       263 ~iwd~~  268 (346)
                      .+-.+.
T Consensus      1043 ~~vR~P 1048 (1205)
T KOG1898|consen 1043 AVVRIP 1048 (1205)
T ss_pred             EEEECC
Confidence            666554

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.46  E-value=3.4  Score=21.45  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=23.0

Q ss_pred             eEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117          143 LVVSASKDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus       143 ~l~s~~~d~~i~iwd~~~~~~~~~~~~  169 (346)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            455668999999999999999998873

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=83.43  E-value=28  Score=29.80  Aligned_cols=12  Identities=17%  Similarity=0.113  Sum_probs=8.5

Q ss_pred             CEEEEecCCCee
Q 019117          152 SVRLWNVQTGIC  163 (346)
Q Consensus       152 ~i~iwd~~~~~~  163 (346)
                      .+.+||..+.+-
T Consensus       190 ~v~~YD~~t~~W  201 (376)
T PRK14131        190 EVLSYDPSTNQW  201 (376)
T ss_pred             eEEEEECCCCee
Confidence            478888876654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.40  E-value=23  Score=28.80  Aligned_cols=53  Identities=8%  Similarity=0.093  Sum_probs=38.3

Q ss_pred             CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe------cCCeEEEEEccc
Q 019117          150 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG------MDNTVKIWSMKE  206 (346)
Q Consensus       150 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~  206 (346)
                      -..|++||..+.+-...-.   +-.+.|+.|.|.. +.++++.|.      ....+..||+.+
T Consensus        15 C~~lC~yd~~~~qW~~~g~---~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~   73 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGN---GISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN   73 (281)
T ss_pred             CCEEEEEECCCCEeecCCC---CceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC
Confidence            4569999988666544433   4678999999984 677777664      345688899887

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.76  E-value=4.3  Score=21.06  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeecc
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVG  126 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~  126 (346)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456668999999999999999887763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=82.56  E-value=3.9  Score=19.44  Aligned_cols=25  Identities=0%  Similarity=0.032  Sum_probs=20.8

Q ss_pred             ceEEEEecCCEEEEEeecCeEEEEc
Q 019117          242 YVDCNRWLGDFILSKSVDNEIVLWE  266 (346)
Q Consensus       242 ~i~~~~~~~~~l~~~~~d~~i~iwd  266 (346)
                      .|.+++....+++++...+.+|+|.
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEecC
Confidence            4677777788999999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.05  E-value=33  Score=29.74  Aligned_cols=76  Identities=7%  Similarity=0.086  Sum_probs=48.3

Q ss_pred             ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117          238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  315 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  315 (346)
                      ...+.|.++.|+  .+.+++--.|.+|.+++....+.     ......+.+.....|....|+...   -+|..+..| +
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-----~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~  134 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-----QLEYTQECKTKNANILGFCWTSST---EIAFITDQG-I  134 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-----hhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-e
Confidence            346689999999  66888888899999999854431     111233334445568888888764   344444333 5


Q ss_pred             EEEEcCC
Q 019117          316 FVWELQS  322 (346)
Q Consensus       316 ~iwd~~~  322 (346)
                      .+|.+..
T Consensus       135 e~y~v~p  141 (657)
T KOG2377|consen  135 EFYQVLP  141 (657)
T ss_pred             EEEEEch
Confidence            5665544

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=82.04  E-value=34  Score=29.83  Aligned_cols=31  Identities=13%  Similarity=0.420  Sum_probs=24.6

Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ..|..++..+ ..+.+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence            3488999987 678999999999999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=81.98  E-value=0.64  Score=21.08  Aligned_cols=8  Identities=13%  Similarity=0.542  Sum_probs=6.2

Q ss_pred             EecCCCCC
Q 019117          339 KYNPQSVY  346 (346)
Q Consensus       339 ~~spdg~~  346 (346)
                      .|||+|++
T Consensus         7 ~FSp~Grl   14 (23)
T PF10584_consen    7 TFSPDGRL   14 (23)
T ss_dssp             SBBTTSSB
T ss_pred             eECCCCeE
Confidence            58898874

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PRK10115 protease 2; Provisional

Probab=81.83  E-value=46  Score=31.26  Aligned_cols=110  Identities=8%  Similarity=-0.027  Sum_probs=58.9

Q ss_pred             EEEEcCCCCcEEEEeec-----CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecC
Q 019117           90 SWACNVDGIPFLVAGGI-----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQ  159 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~  159 (346)
                      .+.++|+|+ +|+.+..     ...|++.|+.+++.+...-....  ..++|.+++..++++...+     ..|..+++.
T Consensus       131 ~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        131 GMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            355679999 6665532     23688999988864332221222  4699999444444544322     357778887


Q ss_pred             CC--eeEEEecccCCCCcceE-EEEecCCCCcEEEEEec---CCeEEEEEccc
Q 019117          160 TG--ICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGM---DNTVKIWSMKE  206 (346)
Q Consensus       160 ~~--~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~---d~~i~iwd~~~  206 (346)
                      ++  +-...+..   ...... .+..+. ++.+++..+.   ++.+.+++...
T Consensus       208 t~~~~d~lv~~e---~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        208 TPASQDELVYEE---KDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             CChhHCeEEEee---CCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcC
Confidence            77  33333431   222222 233332 5554443332   35688888543

>PRK13684 Ycf48-like protein; Provisional

Probab=81.66  E-value=30  Score=29.01  Aligned_cols=155  Identities=10%  Similarity=0.041  Sum_probs=77.4

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEE-EccCcceeeee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVI-DVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      ..+..+.+.  +++. +++++. .|.+..- | ..++.-..+ ......++++.+.+ ++..++.+ ..|.+.+=....+
T Consensus       173 g~~~~i~~~--~~g~-~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        173 GVVRNLRRS--PDGK-YVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             ceEEEEEEC--CCCe-EEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCC
Confidence            455555554  7776 655554 5655432 2 222222222 23456789999998 66666654 4576653233444


Q ss_pred             eeEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          162 ICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       162 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      ..-....... .....+..+.+.| ++..++ ++.+|.+.. .....+.       |.             .......-+
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~t-------W~-------------~~~~~~~~~  302 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGKT-------WE-------------KDPVGEEVP  302 (334)
T ss_pred             CccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCCC-------Ce-------------ECCcCCCCC
Confidence            4333322110 1224578899987 666544 455675543 2222111       00             000000111


Q ss_pred             cceEEEEec-CCEEEEEeecCeEEEEcCC
Q 019117          241 NYVDCNRWL-GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       241 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~  268 (346)
                      .....+.|. ++..+..+..|.|..|+-.
T Consensus       303 ~~~~~~~~~~~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        303 SNFYKIVFLDPEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             cceEEEEEeCCCceEEECCCceEEEecCC
Confidence            234445544 5666667788888877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-67
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		7e-67
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		8e-67
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		8e-67
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-66
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-08
2h9l_A	329	Wdr5delta23 Length = 329		2e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-08
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-08
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-08
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-08
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-08
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		8e-04

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score =  251 bits (640), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)
Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 3   KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 62  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 178
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 179 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 236
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 237 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDF 296
Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 297 WQKMLALGNQVGKLYVWDLEVEDP 320

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score =  250 bits (639), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)
Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 3   KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 62  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 178
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 179 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 236
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 237 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 296
Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 297 WQKMLALGNQVGKLYVWDLEVEDP 320

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score =  250 bits (638), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)
Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 4   KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 62
Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 63  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 179
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 180 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 238 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297
Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 298 WQKMLALGNQVGKLYVWDLEVEDP 321

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score =  250 bits (638), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 202/324 (62%), Gaps = 24/324 (7%)
Query: 20  KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
           K  ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQS
Sbjct: 40  KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 98
Query: 77  YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
           YVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 99  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 215
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 216 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 273
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 274 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 333
Query: 302 HYNAAAIGNREGKIFVWELQSSPP 325
                A+GN+ GK++VW+L+   P
Sbjct: 334 WQKMLALGNQVGKLYVWDLEVEDP 357

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/321 (42%), Positives = 201/321 (62%), Gaps = 24/321 (7%)
Query: 23  YRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQSYVD 79
           ++  N L+E   +PL+ V FN+  S+  +  VFATVG NRVT+Y+C   G I  LQSYVD
Sbjct: 2   FKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD 60
Query: 80  EDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138
            D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P
Sbjct: 61  ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 120
Query: 139 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 196
             P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct: 121 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 177
Query: 197 NTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCNRWL 249
           +++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC RWL
Sbjct: 178 HSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 235
Query: 250 GDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304
           GD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF   
Sbjct: 236 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 295
Query: 305 AAAIGNREGKIFVWELQSSPP 325
             A+GN+ GK++VW+L+   P
Sbjct: 296 MLALGNQVGKLYVWDLEVEDP 316

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 57/302 (18%)
Query: 52  FATVGGNRVT-VYQCLEGGVIAAL--QSYVDEDKEE---------SFYTVSWACNVDGIP 99
           +   G N+ T VY+  +G ++A L   S  ++D E            Y  S   + DG  
Sbjct: 78  YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-K 136
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           FL  G  + +IR+ D+ N K+     GH   I  +   P    LV S S D +VR+W+++
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLR 195
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219
           TG C L  +   G    V +V   P D   IA+  +D  V++W         E  F    
Sbjct: 196 TGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVWDS-------ETGFLVER 244
Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW-----EPKMKEQSP 274
           L S+  +         + V +         G  ++S S+D  + LW       K   ++P
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRD-------GQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--------GNREGKIFVWELQSSPPV 326
             GT           C++ +I    DF  + A          G+++  +  W+ +S  P+
Sbjct: 298 NSGT-----------CEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Query: 327 LI 328
           L+
Sbjct: 346 LM 347

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG+C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN++ LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNDLKLWD 223

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG+C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 223

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 93  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 148
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 149 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 202
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 203 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 242

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 95  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 150
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 151 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 204
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 205 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 244

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 77  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 226

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 77  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 226

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 76  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 131
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 132 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 185
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 186 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 225

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 77  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 226

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 223

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 72  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 127
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 128 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 181
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 182 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 221

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 223

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 67  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 122
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 123 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 176
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 177 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 216

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 88  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 143
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 144 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 197
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 198 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 237

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 70  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 125
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 126 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 179
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 180 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 219

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 71  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 127 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 180
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 181 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 220

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 223

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 71  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 127 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 180
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 181 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 220

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           F ++G  +G +R+ D++     + FVGH   +  +    L    +VSAS+D +++LWN  
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTL 502
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSM 204
                 I  G  GHR+ V  V F P+ +   I S   D TVK+W++
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +++ G  + +IRV D  N+K      GH   +  ++       ++VS S D +VR+W+++
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK 191
Query: 160 TGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTW 217
            G C  +F    GH + V  +D     +I  I +   DNT+ +W + KE  + V      
Sbjct: 192 KGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE--SSVPDHGEE 246
Query: 218 TDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWE-PKMK 270
            D P  F T   + P F+  +  H   V      G+ ++S S DN +++W+  +MK
Sbjct: 247 HDYPLVFHTPE-ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 301

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +++ G  +  IRV D  N+K      GH   +  ++       ++VS S D +VR+W+++
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK 191
Query: 160 TGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTW 217
            G C  +F    GH + V  +D     +I  I +   DNT+ +W + KE  + V      
Sbjct: 192 KGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE--SSVPDHGEE 246
Query: 218 TDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWE 266
            D P  F T   + P F+  +  H   V      G+ ++S S DN +++W+
Sbjct: 247 HDYPLVFHTPE-ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWD 296

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
               +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
               +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 79  DEDKEESFYTVS------WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN 132
           D + E   +T+       ++   DGI  +V+G ++  IRV DV       +  GH    +
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 133 EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
            +    LK +++VS + D +V++W+++TG C+    G   H++ V  + F+ +  + I S
Sbjct: 324 GM---ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITS 378
Query: 193 CGMDNTVKIWSMK 205
              D TVK+W +K
Sbjct: 379 SD-DGTVKLWDLK 390

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
           +V+G  + +++V D   E    +  GH + +  ++   +    VVS S D S+R+W+V+T
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVET 308
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220
           G CI    G     ++ L+      D   + S   D+TVKIW                D+
Sbjct: 309 GNCIHTLTG-----HQSLTSGMELKDNI-LVSGNADSTVKIW----------------DI 346
Query: 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271
            +    + +Q P    + H + V C ++  +F+++ S D  + LW+ K  E
Sbjct: 347 KTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
           +  VSAS D S+RLWN+Q G C   F    GH  +VLSV F P D  +I S G DN +++
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFL---GHTKDVLSVAFSP-DNRQIVSGGRDNALRV 135
Query: 202 WSMK 205
           W++K
Sbjct: 136 WNVK 139

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
               +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 99  PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
           PFL++G  +  I++ DVS      + VGH + +  +         ++S + D+++R+W+ 
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDY 367
Query: 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
           +   C+        H + V S+DFH +  Y + +  +D TVK+W  +
Sbjct: 368 KNKRCMKTL---NAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR 410

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN +
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
               +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 89   VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
            VS  C    + ++  G  +G I++I++ N ++  S VGH  ++  I+      +L+ S+S
Sbjct: 964  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI-SSS 1022
Query: 149  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            +D  +++WN QTG  + + A    H+  V   DF      R+ S   D TVK+W++    
Sbjct: 1023 EDSVIQVWNWQTGDYVFLQA----HQETV--KDFRLLQDSRLLSWSFDGTVKVWNV--IT 1074
Query: 209  TYVEKSFT 216
              +E+ FT
Sbjct: 1075 GRIERDFT 1082

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 89   VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
            VS  C    + ++  G  +G I++I++ N ++  S VGH  ++  I+      +L+ S+S
Sbjct: 971  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI-SSS 1029
Query: 149  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            +D  +++WN QTG  + + A    H+  V   DF      R+ S   D TVK+W++    
Sbjct: 1030 EDSVIQVWNWQTGDYVFLQA----HQETV--KDFRLLQDSRLLSWSFDGTVKVWNV--IT 1081
Query: 209  TYVEKSFT 216
              +E+ FT
Sbjct: 1082 GRIERDFT 1089

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
           ++ G  +  +RV DV+  ++  + + H +++  +R       ++V+ SKD S+ +W++ +
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR---FNNGMMVTCSKDRSIAVWDMAS 242
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220
              I +     GHR  V  VDF   D Y +++ G D T+K+W+                 
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-DRTIKVWN----------------- 282
Query: 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
                T   +F V   + H   + C ++    ++S S DN I LW+
Sbjct: 283 -----TSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 99  PFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDSINEIRTQPLKPSLVVSASKDE 151
           P L++G  +  + +  +  E+        HK+  GH   ++++     +    +S+S D+
Sbjct: 40  PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDK 98
Query: 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
           ++RLW+++TG     F    GH++EV SV F P D  +I S G +  +K+W++
Sbjct: 99  TLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNI 147

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 15  LTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAAL 74
           +TP+K+R      ++ +    +     N +D    NV A      V V+    G V A  
Sbjct: 70  VTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA 129
Query: 75  QSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 134
           ++      +ES Y  S   + DG  FL  G  NG++ + DV ++   ++  GH   +  +
Sbjct: 130 ET------DESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182
Query: 135 --RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
                 L       A     VR+ N Q G          GH +EV  + +  SD  ++AS
Sbjct: 183 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTL-------QGHSSEVCGLAWR-SDGLQLAS 234
Query: 193 CGMDNTVKIWSMKE 206
            G DN V+IW  + 
Sbjct: 235 GGNDNVVQIWDARS 248

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 31/167 (18%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271
                      AS            G  I S   D EI+LW    K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK 229

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 95  VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154
            DG  + ++   +  +R+ DV+  + ++ FVGH   +  +     K S+++S S+D++++
Sbjct: 75  ADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIK 132
Query: 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWT 209
           +W ++ G C+       GH + V  V   P+     D   I S G D  VK W++ +F  
Sbjct: 133 VWTIK-GQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-- 186
Query: 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269
                     + + F           AS            G  I S   D EI+LW    
Sbjct: 187 ---------QIEADFIGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAA 227
Query: 270 KE 271
           K+
Sbjct: 228 KK 229

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 31/167 (18%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271
                      AS            G  I S   D EI+LW    K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK 229

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 95  VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154
            DG  + ++   +  +R+ DV+  + ++ FVGH   +  +     K S+++S S+D++++
Sbjct: 69  ADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIK 126
Query: 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWT 209
           +W ++ G C+       GH + V  V   P+     D   I S G D  VK W++ +F  
Sbjct: 127 VWTIK-GQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-- 180
Query: 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269
                     + + F           AS            G  I S   D EI+LW    
Sbjct: 181 ---------QIEADFIGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAA 221
Query: 270 KE 271
           K+
Sbjct: 222 KK 223

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 95  VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154
            DG  + ++   +  +R+ DV+  + ++ FVGH   +  +     K S+++S S+D++++
Sbjct: 75  ADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIK 132
Query: 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWT 209
           +W ++ G C+       GH + V  V   P+     D   I S G D  VK W++ +F  
Sbjct: 133 VWTIK-GQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-- 186
Query: 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269
                     + + F           AS            G  I S   D EI+LW    
Sbjct: 187 ---------QIEADFIGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAA 227
Query: 270 KE 271
           K+
Sbjct: 228 KK 229

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 32/182 (17%)
Query: 95  VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154
            DG  + ++   +  +R+ DV+  + ++ FVGH   +  +     K S ++S S+D++++
Sbjct: 75  ADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK-KASXIISGSRDKTIK 132
Query: 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWT 209
           +W ++ G C+       GH + V  V   P+     D   I S G D  VK W++ +F  
Sbjct: 133 VWTIK-GQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF-- 186
Query: 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269
                     + + F           AS            G  I S   D EI LW    
Sbjct: 187 ---------QIEADFIGHNSNINTLTASPD----------GTLIASAGKDGEIXLWNLAA 227
Query: 270 KE 271
           K+
Sbjct: 228 KK 229

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
           N +L ++  GH  S+N +  +P     + SAS D++V+LWN + G  +       GH + 
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 305
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIW 202
           V  V F P D   IAS   D TVK+W
Sbjct: 306 VWGVAFSP-DGQTIASASDDKTVKLW 330

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 42/202 (20%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
           N +L ++  GH  S+  +   P     + SAS D++V+LWN + G  +       GH + 
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 223
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236
           V  V F P D   IAS   D TVK+W+                       + +Q      
Sbjct: 224 VRGVAFSP-DGQTIASASDDKTVKLWNRNG--------------------QLLQ----TL 258
Query: 237 SVHSNYVD--CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 294
           + HS+ V+    R  G  I S S D  + LW    +          +LQ        +W 
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVWG 308
Query: 295 IKFSCDFHYNAAAIGNREGKIF 316
           + FS D    A+A  ++  K++
Sbjct: 309 VAFSPDGQTIASASDDKTVKLW 330

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 29/223 (13%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           F ++G  +G +R+ D++     + FVGH   +  +         +VS S+D++++LWN  
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT- 157
Query: 160 TGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218
            G+C         H   V  V F P S    I SCG D  VK+W++              
Sbjct: 158 LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------------ 204
Query: 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278
               K  T ++    ++ +V  +        G    S   D + +LW+    +       
Sbjct: 205 ---CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321
            DI+          W     C     +  I + EGKI V EL+
Sbjct: 256 GDIINALCFSPNRYWL----CAATGPSIKIWDLEGKIIVDELK 294

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 14/144 (9%)
Query: 45  DSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104
           DS+Y      VG  +V ++     GV +  + Y  + + +  + +S A + DG  +L +G
Sbjct: 133 DSQYLATGTHVG--KVNIF-----GVESGKKEYSLDTRGK--FILSIAYSPDG-KYLASG 182
Query: 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164
            I+GII + D++  KL  +  GH   I  +   P    L+V+AS D  +++++VQ     
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLA 241
Query: 165 LIFAGAGGHRNEVLSVDFHPSDIY 188
              +   GH + VL+V F P D +
Sbjct: 242 GTLS---GHASWVLNVAFCPDDTH 262

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 29/223 (13%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           F ++G  +G +R+ D++     + FVGH   +  +         +VS S+D++++LWN  
Sbjct: 77  FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT- 134
Query: 160 TGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218
            G+C         H   V  V F P S    I SCG D  VK+W++              
Sbjct: 135 LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------------ 181
Query: 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278
               K  T ++    ++ +V  +        G    S   D + +LW+    +       
Sbjct: 182 ---CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321
            DI+          W     C     +  I + EGKI V EL+
Sbjct: 233 GDIINALCFSPNRYWL----CAATGPSIKIWDLEGKIIVDELK 271

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 87  YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 134
           Y +SW  N++G  +L++   +  I            RVID  N      F GH   + ++
Sbjct: 185 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 237
Query: 135 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194
               L  SL  S + D+ + +W+ +             H  EV  + F+P   + +A+  
Sbjct: 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297
Query: 195 MDNTVKIWSMKEF 207
            D TV +W ++  
Sbjct: 298 ADKTVALWDLRNL 310

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 87  YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 134
           Y +SW  N++G  +L++   +  I            RVID  N      F GH   + ++
Sbjct: 187 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 239
Query: 135 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194
               L  SL  S + D+ + +W+ +             H  EV  + F+P   + +A+  
Sbjct: 240 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 299
Query: 195 MDNTVKIWSMKEF 207
            D TV +W ++  
Sbjct: 300 ADKTVALWDLRNL 312

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
            L  G  +  + + D+ N KL   SF  H D I +++  P   +++ S+  D  + +W++
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
                       + G   L+F   GGH  ++    ++P++ + I S   DN +++W M E
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 87  YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 134
           Y +SW  N++G  +L++   +  I            RVID  N      F GH   + ++
Sbjct: 189 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 241
Query: 135 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194
               L  SL  S + D+ + +W+ +             H  EV  + F+P   + +A+  
Sbjct: 242 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 195 MDNTVKIWSMKEF 207
            D TV +W ++  
Sbjct: 302 ADKTVALWDLRNL 314

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
            L  G  +  + + D+ N KL   +F  H D I ++   P   +++ S+  D  + +W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
                       + G   L+F   GGH  ++    ++P++ + I S   DN ++IW M E
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 101 LVAGGINGIIRVIDVS-------NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153
           +  GG++    + ++S       N  + +   GH    +  +  P + + +++ S D++ 
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182
Query: 154 RLWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
            LW+V TG  I IF      GH  +VLS+  +  +     S   D TV++W ++
Sbjct: 183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 95  VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154
           VD   F++ G   G I V  ++ +      +GH   I+ +        L++SAS D ++R
Sbjct: 215 VDDDKFVIPG-PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLR 272
Query: 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
           +W+   G     F G   H   ++S  +   D  ++ SC MD +V++WS+K+
Sbjct: 273 IWHGGNGNSQNCFYG---HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ 319

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 98  IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLW 156
           +  L A G +G   + DV + +L +SF GHG  +  +   P +  +  VS   D+   +W
Sbjct: 167 MQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 157 NVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMK 205
           ++++G C+  F     H ++V SV ++PS D +  AS   D T +++ ++
Sbjct: 226 DMRSGQCVQAFE---THESDVNSVRYYPSGDAF--ASGSDDATCRLYDLR 270

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
            L  G  +  + + D+ N KL   +F  H D I ++   P   +++ S+  D  + +W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
                       + G   L+F   GGH  ++    ++P++ + I S   DN  +IW   E
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAE 408

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199
           K  LV   ++   V+L ++++G C  I  G   HR E+L+V + P   Y +A+   D+ V
Sbjct: 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQG---HRQEILAVSWSPRYDYILATASADSRV 211
Query: 200 KIWSMKE 206
           K+W ++ 
Sbjct: 212 KLWDVRR 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.32
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.11
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.0
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.99
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.75
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.75
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.7
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.63
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.46
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.42
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.36
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.32
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.31
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.22
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.12
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.06
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.83
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.71
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.68
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.62
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.59
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.59
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.58
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.37
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.19
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.13
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.11
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.05
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.03
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.91
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.29
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.22
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.19
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.15
3ott_A	758	Two-component system sensor histidine kinase; beta	96.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.98
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.61
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.5
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.45
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.45
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.45
3ott_A	758	Two-component system sensor histidine kinase; beta	95.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.09
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.73
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.27
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.18
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.29
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.0
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.49
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.37
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.82
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.5
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	80.79

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-48  Score=318.02  Aligned_cols=274  Identities=19%  Similarity=0.281  Sum_probs=237.6

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +++.++|.+|.+.|++++|+|    ++.+|++++.|+ |++||+.++..+..+..     +...+.+++|.  |+++ +|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp----~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~-~l   70 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVELWNYETQVEVRSIQV-----TETPVRAGKFI--ARKN-WI   70 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEEE--GGGT-EE
T ss_pred             ceeEEeecCCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCceeEEeec-----cCCcEEEEEEe--CCCC-EE
Confidence            456778899999999999999    789999999998 99999998887777664     66778888877  8888 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~  180 (346)
                      ++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++++ .....+.   +|...|.++
T Consensus        71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~~~v~~v  146 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCV  146 (304)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCCSCEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhc---ccCCcEEEE
Confidence            9999999999999999999999999999999999999 8899999999999999999877 4455666   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec----CCEEEEE
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSK  256 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~  256 (346)
                      +|+|.++.+|++|+.|++|++||++....                      .......|...+..+.|.    +.+|+++
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  204 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTP----------------------NFTLTTGQERGVNYVDYYPLPDKPYMITA  204 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSC----------------------SEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCc----------------------cceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence            99996788999999999999999987221                      122233566778888886    5699999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee-eeeE
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-ICFS  335 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~  335 (346)
                      +.|++|++||+++++         ++..+.+|...|.+++|+|++  .+|++|+.||.|++||+.+++....... ...+
T Consensus       205 s~D~~i~iWd~~~~~---------~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~  273 (304)
T 2ynn_A          205 SDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS  273 (304)
T ss_dssp             ETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCSSSSE
T ss_pred             cCCCeEEEEeCCCCc---------cceeeCCCCCCEEEEEECCCC--CEEEEEcCCCeEEEEECCCCceeeeccCCCccE
Confidence            999999999999876         778889999999999999999  7999999999999999999887665543 3458


Q ss_pred             EEEEecCCCC
Q 019117          336 LHVKYNPQSV  345 (346)
Q Consensus       336 ~~~~~spdg~  345 (346)
                      .+++|+|+|+
T Consensus       274 ~~~~~~~~~~  283 (304)
T 2ynn_A          274 WCIATHPTGR  283 (304)
T ss_dssp             EEEEECTTCG
T ss_pred             EEEEECCCCC
Confidence            8999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-47  Score=326.23  Aligned_cols=270  Identities=23%  Similarity=0.399  Sum_probs=243.2

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ...+.+|.++|++++|+|    ++.+|++|+.|+ |++||+.+++....+..     |...|.+++|.  |+++ +|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p----~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-----h~~~V~~v~~~--~~~~-~l~sg  168 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHP----VFSVMVSASEDATIKVWDYETGDFERTLKG-----HTDSVQDISFD--HSGK-LLASC  168 (410)
T ss_dssp             SCEEECCSSCEEEEEECS----SSSEEEEEESSSCEEEEETTTCCCCEEECC-----CSSCEEEEEEC--TTSS-EEEEE
T ss_pred             eEeecccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEEec-----cCCcEEEEEEc--CCCC-EEEEE
Confidence            456789999999999999    789999999998 99999999888777764     77888888876  8898 99999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      +.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+++++++..+.   +|...|.++.++|
T Consensus       169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~  244 (410)
T 1vyh_C          169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQ  244 (410)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECT
T ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe---CCCccEEEEEECC
Confidence            9999999999999999999999999999999999 88999999999999999999999999998   7999999999998


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---------------
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---------------  249 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------  249 (346)
                       ++.++++++.|+.|++||++.                       ......+..|...|.++.|+               
T Consensus       245 -~g~~l~s~s~D~~v~vwd~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          245 -DGTLIASCSNDQTVRVWVVAT-----------------------KECKAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             -TSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             -CCCEEEEEcCCCeEEEEECCC-----------------------CceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence             999999999999999999988                       33456677899999999996               


Q ss_pred             -------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          250 -------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       250 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                             +.+|++|+.|++|++||+++++         .+..+.+|...|.+++|+|++  .+|++|+.||.|++||+.+
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------CLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SCEEEEETTTEEEEECCTT
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEECCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCC
Confidence                   3489999999999999999876         677888999999999999999  7899999999999999999


Q ss_pred             CCcceeee-eeeeEEEEEecCCCCC
Q 019117          323 SPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       323 ~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                      ++.+..+. +...+.+++|+|++++
T Consensus       370 ~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          370 KRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             SCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             CceEEEEcCCCCcEEEEEEcCCCCE
Confidence            88666543 4456999999999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-47  Score=312.14  Aligned_cols=279  Identities=14%  Similarity=0.142  Sum_probs=239.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ..+.+.+++|.++|++++|+|+...++.+|++|+.|+ |++|++..+......   ....|...|.++++.  +++. ++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~---~l~gh~~~v~~~~~~--~~~~-~l   95 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW---SLEGHQLGVVSVDIS--HTLP-IA   95 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE---EECCCSSCEEEEEEC--SSSS-EE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee---eeccCCCCEEEEEEC--CCCC-EE
Confidence            3445677899999999999985444678999999999 999998766532211   123478889888776  8888 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++++.|++|++||+.+++.+..+..|...+.+++|+| ++++|++++.|+.|++||+++++....+.   .|...|.+++
T Consensus        96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~---~~~~~v~~~~  171 (321)
T 3ow8_A           96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD---TRGKFILSIA  171 (321)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE---CSSSCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec---CCCceEEEEE
Confidence            9999999999999999999999999999999999999 89999999999999999999999988887   6889999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD  259 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  259 (346)
                      |+| ++++|++++.|+.|++||+++                       ...+..+..|...|.+++|+  +++|++++.|
T Consensus       172 ~sp-dg~~lasg~~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          172 YSP-DGKYLASGAIDGIINIFDIAT-----------------------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTT-----------------------TEEEEEECCCSSCCCEEEECTTSCEEEEECTT
T ss_pred             ECC-CCCEEEEEcCCCeEEEEECCC-----------------------CcEEEEEcccCCceeEEEEcCCCCEEEEEcCC
Confidence            999 999999999999999999988                       34566788899999999998  7899999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee-eeeeeEEEE
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLICFSLHV  338 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~  338 (346)
                      ++|++||+++.+         .+..+.+|...|.+++|+|++  .+|++++.|+.|++||+.+++.+..+ .+...+.++
T Consensus       228 g~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~sp~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v  296 (321)
T 3ow8_A          228 GYIKIYDVQHAN---------LAGTLSGHASWVLNVAFCPDD--THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV  296 (321)
T ss_dssp             SCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CeEEEEECCCcc---------eeEEEcCCCCceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence            999999998776         677888999999999999999  78999999999999999998766544 345669999


Q ss_pred             EecCCCCC
Q 019117          339 KYNPQSVY  346 (346)
Q Consensus       339 ~~spdg~~  346 (346)
                      +|+|+|++
T Consensus       297 ~~s~~g~~  304 (321)
T 3ow8_A          297 KYNGNGSK  304 (321)
T ss_dssp             EECTTSSE
T ss_pred             EECCCCCE
Confidence            99999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-45  Score=305.92  Aligned_cols=274  Identities=17%  Similarity=0.298  Sum_probs=236.4

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ...+...++++|.++|++++|+|    ++++|++++.|+ |++||..++..+..+..     +...|.+++|+  |+++ 
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~----d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-----~~~~v~~~~~s--~~~~-  110 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGT----DSRLLLSASQDGKLIIWDSYTTNKVHAIPL-----RSSWVMTCAYA--PSGN-  110 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEEC-----SSSCEEEEEEC--TTSS-
T ss_pred             ccchhheeecCCCCceEEEEECC----CCCEEEEEeCCCcEEEEECCCCCcceEeec-----CCccEEEEEEC--CCCC-
Confidence            34667788999999999999999    789999999999 99999998887776654     66778777776  8998 


Q ss_pred             EEEEeecCCeEEEEEccCc----ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117          100 FLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                      +|++|+.|+.|++|++.++    +....+.+|.+.|.++.|++ ++ .+++++.|++|++||+++++.+..+.   +|..
T Consensus       111 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~---~h~~  185 (340)
T 1got_B          111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFT---GHTG  185 (340)
T ss_dssp             EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEEC---CCSS
T ss_pred             EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEc---CCCC
Confidence            9999999999999999875    35567789999999999998 54 58999999999999999999999988   7999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  253 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  253 (346)
                      .|.+++|+| ++.++++|+.|+.|++||++.                       ......+..|...|.+++|+  +++|
T Consensus       186 ~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~~~p~~~~l  241 (340)
T 1got_B          186 DVMSLSLAP-DTRLFVSGACDASAKLWDVRE-----------------------GMCRQTFTGHESDINAICFFPNGNAF  241 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------CSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEECCC-----------------------CeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence            999999999 899999999999999999988                       34566788899999999998  7899


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee-e
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-R  330 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~  330 (346)
                      ++++.|++|++||+++.+         .+..+.  .+...|.+++|+|++  .+|++|+.||.|++||+.+++.+... .
T Consensus       242 ~s~s~d~~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          242 ATGSDDATCRLFDLRADQ---------ELMTYSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCcEEEEECCCCc---------EEEEEccCCcccceEEEEECCCC--CEEEEECCCCeEEEEEcccCcEeeEeec
Confidence            999999999999998765         233332  234579999999999  79999999999999999988765543 3


Q ss_pred             eeeeEEEEEecCCCCC
Q 019117          331 LICFSLHVKYNPQSVY  346 (346)
Q Consensus       331 ~~~~~~~~~~spdg~~  346 (346)
                      +.+.+.+++|+|||++
T Consensus       311 h~~~v~~~~~s~dg~~  326 (340)
T 1got_B          311 HDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             CSSCEEEEEECTTSSC
T ss_pred             CCCcEEEEEEcCCCCE
Confidence            4556899999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=311.55  Aligned_cols=271  Identities=14%  Similarity=0.136  Sum_probs=218.3

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccC-------ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG-------GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ..|...|.+++|+|    +|++|++++++.+++||....       ........ ....+...|.+++|+  |++  .|+
T Consensus        27 ~~~~~~v~~~~fs~----dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s--~d~--~l~   97 (344)
T 4gqb_B           27 ACMERQLEAARYRS----DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCS-AGVQTEAGVADLTWV--GER--GIL   97 (344)
T ss_dssp             SSCCSEEEEEEECT----TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCS-EEEEESSCEEEEEEE--TTT--EEE
T ss_pred             ccccCCEEEEEECC----CCCEEEEEeCCceEEeeceeeeeccccccCCcceee-eeeccCCCEEEEEEe--CCC--eEE
Confidence            56788899999999    889999998766888873211       00000000 001144568888887  775  688


Q ss_pred             EeecCCeEEEEEccCcceeee----eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          103 AGGINGIIRVIDVSNEKLHKS----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      +|+.||+|+|||+.+++.+..    ..+|.+.|++++|+| ++++|++|+.|++|++||+++++.+..+.   +|...|+
T Consensus        98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~---~h~~~V~  173 (344)
T 4gqb_B           98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR---AHAAQVT  173 (344)
T ss_dssp             EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEE
T ss_pred             EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc---CcCCceE
Confidence            999999999999998875543    347999999999999 89999999999999999999999999998   8999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE--eecccceEEEEec---CCEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL---GDFI  253 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~---~~~l  253 (346)
                      +++|+|++..+|++++.|++|++||++..+                       +...+  ..|...+.+++|+   +++|
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~p~~~~~l  230 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPK-----------------------PASQIGCSAPGYLPTSLAWHPQQSEVF  230 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSS-----------------------CEEECC----CCCEEEEEECSSCTTEE
T ss_pred             EEEecCCCCCceeeeccccccccccccccc-----------------------eeeeeecceeeccceeeeecCCCCcce
Confidence            999999555789999999999999999833                       22222  3455678899997   5689


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      ++|+.|++|++||+++++         .+..+.+|...|++++|+|++. .+|++|+.|+.|+|||+.+++......+.+
T Consensus       231 ~sg~~dg~v~~wd~~~~~---------~~~~~~~h~~~v~~v~fsp~g~-~~lasgs~D~~i~vwd~~~~~~~~~~~H~~  300 (344)
T 4gqb_B          231 VFGDENGTVSLVDTKSTS---------CVLSSAVHSQCVTGLVFSPHSV-PFLASLSEDCSLAVLDSSLSELFRSQAHRD  300 (344)
T ss_dssp             EEEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTCCEEEEECCCSS
T ss_pred             EEeccCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCcEEEEcCCCC
Confidence            999999999999999876         6788899999999999999985 589999999999999999987665556667


Q ss_pred             eEEEEEecCCCCC
Q 019117          334 FSLHVKYNPQSVY  346 (346)
Q Consensus       334 ~~~~~~~spdg~~  346 (346)
                      .+++++|+|+|++
T Consensus       301 ~V~~v~~sp~~~~  313 (344)
T 4gqb_B          301 FVRDATWSPLNHS  313 (344)
T ss_dssp             CEEEEEECSSSTT
T ss_pred             CEEEEEEeCCCCe
Confidence            7999999999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1e-44  Score=302.13  Aligned_cols=275  Identities=19%  Similarity=0.248  Sum_probs=234.4

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..+....|.+|.++|++++|+|    ++.+||+|+.|+ |++||..++.....+..     +...|.+++|+  |+|. +
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~----d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-----~~~~v~~~~~s--p~g~-~  120 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCK----DKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-----PCTWVMACAYA--PSGC-A  120 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----SSSCCCEEEEC--TTSS-E
T ss_pred             ccEEEEEecCCCCeEEEEEECC----CCCEEEEEeCCCeEEEEECCCCCcceEEec-----CCCCEEEEEEC--CCCC-E
Confidence            3566778899999999999999    789999999999 99999888877666653     55667667665  9999 9


Q ss_pred             EEEeecCCeEEEEEccCc------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117          101 LVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      |++|+.|+.+++|++...      .....+.+|...|.+++|+| ++..|++++.|++|++||+++++.+..+.   +|.
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---~h~  196 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFH---GHG  196 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCS
T ss_pred             EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc---CCC
Confidence            999999999999998643      34566778999999999999 88899999999999999999999999998   799


Q ss_pred             cceEEEEecCC-CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117          175 NEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD  251 (346)
Q Consensus       175 ~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  251 (346)
                      ..|.+++|+|. ++.+|++|+.||.|++||+++                       ...+..+..|...|.+++|+  ++
T Consensus       197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~~~p~~~  253 (354)
T 2pbi_B          197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-----------------------GQCVQAFETHESDVNSVRYYPSGD  253 (354)
T ss_dssp             SCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEecCCCCCeEEEEEeCCCC
Confidence            99999999873 358999999999999999998                       34566788899999999998  78


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      +|++++.|++|++||++..+         .+..+.  .+...+.+++|+|++  .+|++|+.|+.|++||+.+++.+...
T Consensus       254 ~l~s~s~D~~v~lwd~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g--~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          254 AFASGSDDATCRLYDLRADR---------EVAIYSKESIIFGASSVDFSLSG--RLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             EEEEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCc---------EEEEEcCCCcccceeEEEEeCCC--CEEEEEECCCcEEEEECCCCceEEEE
Confidence            99999999999999998765         222222  233578999999999  79999999999999999988765443


Q ss_pred             -eeeeeEEEEEecCCCCC
Q 019117          330 -RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       330 -~~~~~~~~~~~spdg~~  346 (346)
                       .+...+.+++|+|||++
T Consensus       323 ~~h~~~v~~l~~spdg~~  340 (354)
T 2pbi_B          323 FGHENRVSTLRVSPDGTA  340 (354)
T ss_dssp             CCCSSCEEEEEECTTSSC
T ss_pred             ECCCCcEEEEEECCCCCE
Confidence             34566999999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.9e-45  Score=300.35  Aligned_cols=251  Identities=16%  Similarity=0.171  Sum_probs=212.4

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ..|...|++++|+|    + ..|++|+.|+ |+|||+.+++....+... ...|...|.+++|+  |+|+ +|++|+.|+
T Consensus        79 ~~~~~~v~~~~~s~----d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~-~~~H~~~V~~v~~s--pdg~-~l~sgs~d~  149 (344)
T 4gqb_B           79 VQTEAGVADLTWVG----E-RGILVASDSGAVELWELDENETLIVSKFC-KYEHDDIVSTVSVL--SSGT-QAVSGSKDI  149 (344)
T ss_dssp             EEESSCEEEEEEET----T-TEEEEEETTSEEEEEEECTTSSCEEEEEE-EECCSSCEEEEEEC--TTSS-EEEEEETTS
T ss_pred             eccCCCEEEEEEeC----C-CeEEEEECCCEEEEEeccCCCceeEeecc-ccCCCCCEEEEEEC--CCCC-EEEEEeCCC
Confidence            34667899999998    4 4677788887 999999988876554422 23488899988887  9999 999999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +|++||+.+++.+..+.+|.+.|.+++|+|++..+|++++.|++|++||+++++....+... .+...+.+++|+|.++.
T Consensus       150 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~  228 (344)
T 4gqb_B          150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSE  228 (344)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTT
T ss_pred             eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCc
Confidence            99999999999999999999999999999955578999999999999999999988877521 35667999999997788


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C-CEEEEEeecCeEEEE
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEIVLW  265 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~iw  265 (346)
                      ++++|+.||.|++||+++                       ..++..+..|...|++++|+  + ++|++++.|++|+||
T Consensus       229 ~l~sg~~dg~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          229 VFVFGDENGTVSLVDTKS-----------------------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL  285 (344)
T ss_dssp             EEEEEETTSEEEEEESCC-------------------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             ceEEeccCCcEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence            999999999999999998                       45677889999999999998  4 579999999999999


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      |+.+++          +..+.+|.+.|++++|+|+++ .+|++++.||.|++|++.+..
T Consensus       286 d~~~~~----------~~~~~~H~~~V~~v~~sp~~~-~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          286 DSSLSE----------LFRSQAHRDFVRDATWSPLNH-SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CTTCCE----------EEEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECCC--
T ss_pred             ECCCCc----------EEEEcCCCCCEEEEEEeCCCC-eEEEEEcCCCeEEEEECCCCC
Confidence            998765          345678999999999999985 478899999999999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.6e-46  Score=311.75  Aligned_cols=281  Identities=19%  Similarity=0.268  Sum_probs=235.8

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ..+.+..+|++|.++|++++|+|    ++.+|++|+.|+ |++||..+++....+..     |...|.+++|+  |+|+ 
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-----h~~~v~~~~~s--~~g~-  121 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTP----EKNWIVSASQDGRLIVWNALTSQKTHAIKL-----HCPWVMECAFA--PNGQ-  121 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEETTTTEEEEEEEC-----CCTTCCCCEEC--TTSS-
T ss_pred             ceeEEeecccccccEEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCccceEEec-----CCCCEEEEEEC--CCCC-
Confidence            34667788999999999999999    789999999999 99999998888777764     56667777765  9999 


Q ss_pred             EEEEeecCCeEEEEEccCcc-------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc--c
Q 019117          100 FLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG--A  170 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~  170 (346)
                      +|++|+.|+.+++||+.+..       ....+.+|.+.|.++.|.|.++..|++|+.|++|++||+++++.+..+..  .
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence            99999999999999986532       34567899999999999996677899999999999999999998887732  1


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      .+|...|.+++|+|.++.++++|+.|++|++||++..                      ...+..+.+|...|.+++|+ 
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~----------------------~~~~~~~~~h~~~v~~v~~~p  259 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT----------------------SRAVRTYHGHEGDINSVKFFP  259 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT----------------------CCCCEEECCCSSCCCEEEECT
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC----------------------CcceEEECCcCCCeEEEEEec
Confidence            3689999999998767899999999999999999851                      23466788899999999998 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-------CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                       +++|++++.|++|++||+++++         .+..+..       +...|.+++|+|++  .+|++|+.||.|++||+.
T Consensus       260 ~~~~l~s~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          260 DGQRFGTGSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISG--RLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             TSSEEEEECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSS--SEEEEECTTSCEEEEETT
T ss_pred             CCCeEEEEcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCC--CEEEEEECCCCEEEEECC
Confidence             7899999999999999999876         2222222       22358999999999  799999999999999999


Q ss_pred             CCCcceee-----eeeeeEEEEEecCCCCC
Q 019117          322 SSPPVLIA-----RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       322 ~~~~~~~~-----~~~~~~~~~~~spdg~~  346 (346)
                      +++.....     .+.+.+.+++|+|||++
T Consensus       329 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          329 LAEMVLNLGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             TCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred             CCceEEEEecccCCCCCceEEEEECCCCCE
Confidence            88765443     34556899999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.4e-46  Score=308.53  Aligned_cols=273  Identities=16%  Similarity=0.166  Sum_probs=216.9

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcC------Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~------~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ...|...|++|+|+|    ||++||+++.      |+ |++|+..++.....+.... ..|...|.+++|+  |+++  +
T Consensus        38 p~~H~~~V~~v~fSp----DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s--~d~~--~  108 (357)
T 4g56_B           38 PACMEVQIGAVRYRR----DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWV--SEKG--I  108 (357)
T ss_dssp             --CCCSEEEEEEECS----SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEE--TTTE--E
T ss_pred             cccccCCEEEEEECC----CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEc--CCCC--E
Confidence            357999999999999    8999999997      44 8888876655433222111 1266789888887  8875  5


Q ss_pred             EEeecCCeEEEEEccCcceee----eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          102 VAGGINGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      ++++.||+|+|||+.+++...    ...+|...|.+++|+| ++++|++|+.|++|++||+++++.+..+.   +|...|
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~---~h~~~v  184 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN---AHSSEV  184 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCE
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCE
Confidence            677889999999998876443    3447999999999999 89999999999999999999999999998   799999


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFIL  254 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~  254 (346)
                      ++++|+|++..++++++.|+.|++||+++.+..                     .......|...+.+++|+   +.+|+
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~---------------------~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA---------------------TRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCB---------------------CBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCcee---------------------eeeeeccccccccchhhhhcccceEE
Confidence            999999955568999999999999999873311                     111233466778999997   56899


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF  334 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  334 (346)
                      +++.|+.|++||+++++         .+..+.+|...|++++|+|++. .+|++|+.|+.|+|||+++++.+....+.+.
T Consensus       244 ~g~~d~~i~~wd~~~~~---------~~~~~~~~~~~v~~l~~sp~~~-~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~  313 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPD---------SAQTSAVHSQNITGLAYSYHSS-PFLASISEDCTVAVLDADFSEVFRDLSHRDF  313 (357)
T ss_dssp             EEESSSCEEEEESSCGG---------GCEEECCCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTSCEEEEECCCSSC
T ss_pred             EeecccceeEEECCCCc---------EeEEEeccceeEEEEEEcCCCC-CEEEEEeCCCEEEEEECCCCcEeEECCCCCC
Confidence            99999999999999876         6778888999999999999985 5899999999999999999987777777778


Q ss_pred             EEEEEecC-CCC
Q 019117          335 SLHVKYNP-QSV  345 (346)
Q Consensus       335 ~~~~~~sp-dg~  345 (346)
                      +++++|+| |++
T Consensus       314 V~~vafsP~d~~  325 (357)
T 4g56_B          314 VTGVAWSPLDHS  325 (357)
T ss_dssp             EEEEEECSSSTT
T ss_pred             EEEEEEeCCCCC
Confidence            99999999 665

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-44  Score=295.55  Aligned_cols=278  Identities=18%  Similarity=0.295  Sum_probs=229.1

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee--eEeeeecCCCccceEEEEEEEcCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      .+.+.+..+|.+|.++|++++|+|.   .+++|++|+.|+ |++|++.......  .+..+  ..|...|.+++|.  |+
T Consensus         4 ~~~~~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s--~d   76 (319)
T 3frx_A            4 NEVLVLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF--KGHSHIVQDCTLT--AD   76 (319)
T ss_dssp             CEEEEEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE--ECCSSCEEEEEEC--TT
T ss_pred             ceEEEEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCccccccceEE--eCCcccEEEEEEC--CC
Confidence            4557788899999999999999982   347999999999 9999987543221  12222  2478889888876  99


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                      ++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++ ++.+..+.   +|...
T Consensus        77 g~-~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~---~h~~~  150 (319)
T 3frx_A           77 GA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL---GHNDW  150 (319)
T ss_dssp             SS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEEC---CCSSC
T ss_pred             CC-EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEe---ccCCc
Confidence            98 999999999999999999999999999999999999999 88999999999999999997 55666776   79999


Q ss_pred             eEEEEecCC-----CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          177 VLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       177 v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      |.++.|+|.     ++..+++++.|+.|++||++.                       ......+..|...|.+++|+  
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----------------------~~~~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-----------------------FQIEADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTT-----------------------TEEEEEECCCCSCEEEEEECTT
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-----------------------chhheeecCCCCcEEEEEEcCC
Confidence            999999983     234899999999999999987                       33455677899999999998  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      +++|++++.|++|++||+.+.+         .+..+..+ ..|.+++|+|++  .+|++++.+ .+++|++..+..+...
T Consensus       208 g~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~-~~v~~~~~sp~~--~~la~~~~~-~i~v~~~~~~~~~~~~  274 (319)
T 3frx_A          208 GTLIASAGKDGEIMLWNLAAKK---------AMYTLSAQ-DEVFSLAFSPNR--YWLAAATAT-GIKVFSLDPQYLVDDL  274 (319)
T ss_dssp             SSEEEEEETTCEEEEEETTTTE---------EEEEEECC-SCEEEEEECSSS--SEEEEEETT-EEEEEEETTEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCc---------EEEEecCC-CcEEEEEEcCCC--CEEEEEcCC-CcEEEEeCcCeeeecc
Confidence            7899999999999999999876         45555544 589999999999  678777654 5999999876543322


Q ss_pred             e---------eeeeEEEEEecCCCCC
Q 019117          330 R---------LICFSLHVKYNPQSVY  346 (346)
Q Consensus       330 ~---------~~~~~~~~~~spdg~~  346 (346)
                      .         ....+.+++|+|||++
T Consensus       275 ~~~~~~~~~~~~~~v~~~~~spdg~~  300 (319)
T 3frx_A          275 RPEFAGYSKAAEPHAVSLAWSADGQT  300 (319)
T ss_dssp             CCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred             CccccccccCcCcceeEEEECCCCCE
Confidence            2         2345789999999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=297.18  Aligned_cols=249  Identities=16%  Similarity=0.282  Sum_probs=224.5

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ...+...+.+|...|.+++|+|    ++.++++++.|+ |++||+.+++.+..+..     +...+.+++|+  |+++ +
T Consensus        69 ~~~~~~~l~gh~~~v~~~~~~~----~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~-----~~~~~~~~~~s--pdg~-~  136 (321)
T 3ow8_A           69 RLDLQWSLEGHQLGVVSVDISH----TLPIAASSSLDAHIRLWDLENGKQIKSIDA-----GPVDAWTLAFS--PDSQ-Y  136 (321)
T ss_dssp             EEEEEEEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CTTCCCCEEEC--TTSS-E
T ss_pred             CeeeeeeeccCCCCEEEEEECC----CCCEEEEEeCCCcEEEEECCCCCEEEEEeC-----CCccEEEEEEC--CCCC-E
Confidence            3445567899999999999999    778999999998 99999999888777654     44556666665  9999 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      |++++.||.|++|++.+++....+..|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+.   +|...|+++
T Consensus       137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l  212 (321)
T 3ow8_A          137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSL  212 (321)
T ss_dssp             EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEE
T ss_pred             EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEE
Confidence            99999999999999999999999999999999999999 89999999999999999999999999988   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      +|+| ++.+|++++.|+.|++||++.                       ......+..|...|.+++|+  +.+|++++.
T Consensus       213 ~~sp-d~~~l~s~s~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          213 TFSP-DSQLLVTASDDGYIKIYDVQH-----------------------ANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             EECT-TSCEEEEECTTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEcC-CCCEEEEEcCCCeEEEEECCC-----------------------cceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            9999 899999999999999999987                       33456788899999999998  789999999


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      |++|++||+.+++         ++..+..|...|.+++|+|++  .+|++++.||.|++||+.
T Consensus       269 D~~v~iwd~~~~~---------~~~~~~~h~~~v~~v~~s~~g--~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          269 DKSVKVWDVGTRT---------CVHTFFDHQDQVWGVKYNGNG--SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEeCCCCE---------EEEEEcCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEeCC
Confidence            9999999999876         778888999999999999999  789999999999999963

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=296.26  Aligned_cols=288  Identities=17%  Similarity=0.244  Sum_probs=230.6

Q ss_pred             cceeeeeecccCCC-ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           21 REYRVTNKLQEGKR-PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        21 ~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ..+.++.++++|.+ .|++++|+|    ++++||+|+.|+ |+||+...+.......  ....|...|.+++|+  |+++
T Consensus         3 ~~~~~~~~~~~h~~~~v~~l~~sp----~g~~las~~~D~~i~iw~~~~~~~~~~~~--~~~~h~~~v~~~~~s--p~g~   74 (345)
T 3fm0_A            3 DSLVLLGRVPAHPDSRCWFLAWNP----AGTLLASCGGDRRIRIWGTEGDSWICKSV--LSEGHQRTVRKVAWS--PCGN   74 (345)
T ss_dssp             -CEEEEEEECCSTTSCEEEEEECT----TSSCEEEEETTSCEEEEEEETTEEEEEEE--ECSSCSSCEEEEEEC--TTSS
T ss_pred             ccEEEeeeecCCCCCcEEEEEECC----CCCEEEEEcCCCeEEEEEcCCCcceeeee--eccccCCcEEEEEEC--CCCC
Confidence            35678888999988 999999999    789999999998 9999988765432221  123578889888887  8998


Q ss_pred             cEEEEeecCCeEEEEEccCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCC
Q 019117           99 PFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGH  173 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~  173 (346)
                       +|++|+.|+.+++||+.++  +.+..+.+|...|.+++|+| ++++|++|+.|++|++||++++..   +..+.   +|
T Consensus        75 -~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~h  149 (345)
T 3fm0_A           75 -YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLN---SH  149 (345)
T ss_dssp             -EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEEC---CC
T ss_pred             -EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEec---Cc
Confidence             9999999999999998876  45778899999999999999 899999999999999999987643   44454   79


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD  251 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  251 (346)
                      ...|.+++|+| ++.+|++++.|+.|++||++...                     ......+..|...|.+++|+  ++
T Consensus       150 ~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~---------------------~~~~~~~~~h~~~v~~l~~sp~g~  207 (345)
T 3fm0_A          150 TQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD---------------------WVCCATLEGHESTVWSLAFDPSGQ  207 (345)
T ss_dssp             CSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC---------------------EEEEEEecCCCCceEEEEECCCCC
Confidence            99999999999 88999999999999999988622                     12345778899999999998  88


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCC------ccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGE------GTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +|++++.|++|++||..........      ....++..+.+ |...|.+++|+|++  ..|++++.|+.|++|+...+.
T Consensus       208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT--GALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT--CCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC--CEEEEEeCCCeEEEEEeCCCC
Confidence            9999999999999997543211100      01112333444 77899999999999  689999999999999987653


Q ss_pred             c----ceee------eeeeeEEEEEecCCCC
Q 019117          325 P----VLIA------RLICFSLHVKYNPQSV  345 (346)
Q Consensus       325 ~----~~~~------~~~~~~~~~~~spdg~  345 (346)
                      .    ....      .+...+++++|+|+++
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP  316 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred             CcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence            1    1111      1234589999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-43  Score=290.53  Aligned_cols=276  Identities=22%  Similarity=0.390  Sum_probs=233.6

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .+.+.+..++.+|.++|++++|+|    ++++||+++.|+ |++|+..+++....+..     |...|.+++|.  |+++
T Consensus        10 ~~~~~~~~~~~gh~~~v~~~~~s~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~   78 (312)
T 4ery_A           10 KPNYALKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWS--SDSN   78 (312)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEEC--TTSS
T ss_pred             CCCceeEEEEcccCCcEEEEEECC----CCCEEEEeeCCCeEEEEeCCCcccchhhcc-----CCCceEEEEEc--CCCC
Confidence            345777888999999999999999    789999999998 99999988887666653     67788888876  8998


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                       +|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+.   .|...|.
T Consensus        79 -~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~  153 (312)
T 4ery_A           79 -LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVS  153 (312)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred             -EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEec---CCCCcEE
Confidence             999999999999999999999999999999999999999 88999999999999999999999998888   7999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~  255 (346)
                      +++|+| ++.++++++.|+.|++||++..+                       .+..+ ..+...+.+++|+  +++|++
T Consensus       154 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQ-----------------------CLKTLIDDDNPPVSFVKFSPNGKYILA  209 (312)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----------------------eeeEEeccCCCceEEEEECCCCCEEEE
Confidence            999999 89999999999999999998732                       22222 3456678889998  789999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeE--EEEe-ecCCcceEEEEcCCCcEEEEEcCCCCcceeee-e
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF--IKFS-CDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-L  331 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  331 (346)
                      ++.|+.|++||+++++         .+..+.+|...+..  ..++ +++  .+|++|+.||.|++||+.+++.+..+. +
T Consensus       210 ~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          210 ATLDNTLKLWDYSKGK---------CLKTYTGHKNEKYCIFANFSVTGG--KWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             EETTTEEEEEETTTTE---------EEEEECSSCCSSSCCCEEEECSSS--CEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             EcCCCeEEEEECCCCc---------EEEEEEecCCceEEEEEEEEeCCC--cEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            9999999999999876         55666666544322  3444 444  689999999999999999988665443 4


Q ss_pred             eeeEEEEEecCCCCC
Q 019117          332 ICFSLHVKYNPQSVY  346 (346)
Q Consensus       332 ~~~~~~~~~spdg~~  346 (346)
                      ...+.+++|+|++++
T Consensus       279 ~~~v~~~~~~p~~~~  293 (312)
T 4ery_A          279 TDVVISTACHPTENI  293 (312)
T ss_dssp             SSCEEEEEECSSSSE
T ss_pred             CCcEEEEeecCcCCc
Confidence            455889999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-44  Score=303.91  Aligned_cols=249  Identities=21%  Similarity=0.346  Sum_probs=224.1

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|.+.|++++|+|    ++++|++|+.|+ |++||+.+++.+..+..     |...|.+++|.  |++. +|
T Consensus       140 ~~~~~~l~~h~~~V~~v~~~~----~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-----h~~~V~~v~~~--p~~~-~l  207 (410)
T 1vyh_C          140 GDFERTLKGHTDSVQDISFDH----SGKLLASCSADMTIKLWDFQGFECIRTMHG-----HDHNVSSVSIM--PNGD-HI  207 (410)
T ss_dssp             CCCCEEECCCSSCEEEEEECT----TSSEEEEEETTSCCCEEETTSSCEEECCCC-----CSSCEEEEEEC--SSSS-EE
T ss_pred             CcEEEEEeccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeEEEcC-----CCCCEEEEEEe--CCCC-EE
Confidence            345667899999999999999    789999999998 99999988877666653     77788888776  8888 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++|+.|++|++||+.+++.+..+.+|...|.++.++| ++.+|++|+.|++|++||+++++....+.   +|...|.+++
T Consensus       208 ~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~  283 (410)
T 1vyh_C          208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVECIS  283 (410)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEec---CCCceEEEEE
Confidence            9999999999999999999999999999999999999 89999999999999999999999998888   7999999999


Q ss_pred             ecCCC-------------------CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          182 FHPSD-------------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       182 ~~~~~-------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      |+|+.                   +.+|++|+.|+.|++||+++                       ...+..+.+|...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-----------------------~~~~~~~~~h~~~  340 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----------------------GMCLMTLVGHDNW  340 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-----------------------TEEEEEEECCSSC
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-----------------------CceEEEEECCCCc
Confidence            99832                   56899999999999999988                       4467778899999


Q ss_pred             eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      |.++.|+  +++|++++.|++|++||+.+++         .+..+.+|...|++++|+|++  .+|++|+.||.|++|++
T Consensus       341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~--~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEcCCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeC
Confidence            9999998  7899999999999999998776         677888999999999999999  78999999999999986


Q ss_pred             C
Q 019117          321 Q  321 (346)
Q Consensus       321 ~  321 (346)
                      +
T Consensus       410 r  410 (410)
T 1vyh_C          410 R  410 (410)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-42  Score=288.43  Aligned_cols=282  Identities=16%  Similarity=0.244  Sum_probs=222.4

Q ss_pred             cceeeeeecccCCCceEEEEEEee--cCCCccEEEEEcCCc-EEEEEeccCcee----eeEeeeecCCCccceEEEEEEE
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFI--DSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWAC   93 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~--~~~~~~~la~~~~~~-v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~   93 (346)
                      ..+++...|++|.+.|++++|.+.  .+.++.+||+|+.|+ |++||+.+.+..    .....  ...|...|.+++|+ 
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~~-   85 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA--LTGHNHFVSDLALS-   85 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE--ECCCSSCEEEEEEC-
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch--hccCCCceEEEEEC-
Confidence            456677889999999999999321  112678999999998 999998754321    11111  13478889888876 


Q ss_pred             cCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC
Q 019117           94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH  173 (346)
Q Consensus        94 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  173 (346)
                       |++. ++++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.. +.........+|
T Consensus        86 -~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~  161 (343)
T 2xzm_R           86 -QENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILG-ECKFSSAEKENH  161 (343)
T ss_dssp             -SSTT-EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSS-CEEEECCTTTSC
T ss_pred             -CCCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccC-CceeeeecccCC
Confidence             8898 999999999999999999999999999999999999999 889999999999999999984 434344333368


Q ss_pred             CcceEEEEecCCCC----------cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          174 RNEVLSVDFHPSDI----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       174 ~~~v~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ...|.+++|+| ++          .++++++.|+.|++||...                        .....+..|...|
T Consensus       162 ~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------------~~~~~~~~h~~~v  216 (343)
T 2xzm_R          162 SDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF------------------------QIRYTFKAHESNV  216 (343)
T ss_dssp             SSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT------------------------EEEEEEECCSSCE
T ss_pred             Cceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC------------------------ceeEEEcCccccc
Confidence            89999999998 54          6899999999999999543                        2345678899999


Q ss_pred             EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      .+++|+  +++|++++.|+.|++||+.....        ....+ .+...|.+++|+|++  .+++ ++.|+.|++||+.
T Consensus       217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~--------~~~~~-~~~~~v~~v~~sp~~--~~la-~~~d~~v~iw~~~  284 (343)
T 2xzm_R          217 NHLSISPNGKYIATGGKDKKLLIWDILNLTY--------PQREF-DAGSTINQIAFNPKL--QWVA-VGTDQGVKIFNLM  284 (343)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEESSCCSS--------CSEEE-ECSSCEEEEEECSSS--CEEE-EEESSCEEEEESS
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEECCCCcc--------cceee-cCCCcEEEEEECCCC--CEEE-EECCCCEEEEEeC
Confidence            999998  78999999999999999954331        22222 234579999999998  5665 4568889999999


Q ss_pred             CCCcceeee--------------eeeeEEEEEecCCCCC
Q 019117          322 SSPPVLIAR--------------LICFSLHVKYNPQSVY  346 (346)
Q Consensus       322 ~~~~~~~~~--------------~~~~~~~~~~spdg~~  346 (346)
                      +++......              +...+.+++|+|+|++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred             CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence            877554222              2344789999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-43  Score=296.30  Aligned_cols=321  Identities=39%  Similarity=0.716  Sum_probs=248.2

Q ss_pred             ceeeeeec-ccCCCceEEEEEEeecC-CCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC--C
Q 019117           22 EYRVTNKL-QEGKRPLYAVVFNFIDS-RYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--G   97 (346)
Q Consensus        22 ~~~~~~~~-~~h~~~v~~~~~~p~~~-~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~   97 (346)
                      .|+....+ .+|.++|++++|+|..+ .+..++++++.+.|++|++.+++.+..+..+....+...|.+++|+++..  +
T Consensus         6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A            6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence            34444344 68999999999998311 12346777767779999999999988888887777888999999984432  6


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      . +|++|+.||.|++||+.+++.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++.+..+....+|...|
T Consensus        86 ~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           86 P-LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             E-EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             C-EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            6 999999999999999999999999999999999999999778899999999999999999999998884333799999


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeec--eeecCCCCC--CCC-ccceeceEEEeecccceEEEEecCCE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS--FTWTDLPSK--FPT-KYVQFPVFIASVHSNYVDCNRWLGDF  252 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~  252 (346)
                      .+++|+| ++.+|++++.||.|++||++..+......  ..+......  ... ............|...|.++.|++++
T Consensus       165 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  243 (366)
T 3k26_A          165 LSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDL  243 (366)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTE
T ss_pred             eEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCE
Confidence            9999999 89999999999999999998743211110  000000000  000 00011233445599999999999999


Q ss_pred             EEEEeecCeEEEEcCCCCCCCC-----CCccccccccccCCCcCeeEEEEeec--CCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSP-----GEGTADILQKYPVPECDIWFIKFSCD--FHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      +++++.|+.|++||+.+.+...     .......+..+..|...|.+++|+|+  +  .+|++++.||.|++||+.++++
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ--KMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS--SEEEEECTTSCEEEEECCSSSG
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC--cEEEEEecCCcEEEEECCCCCC
Confidence            9999999999999998765311     11112346677788889999999999  7  7999999999999999999875


Q ss_pred             ce----eeee---eeeEEEEEecCCCCC
Q 019117          326 VL----IARL---ICFSLHVKYNPQSVY  346 (346)
Q Consensus       326 ~~----~~~~---~~~~~~~~~spdg~~  346 (346)
                      ..    ....   ...+.+++|+|+|++
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~  349 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFSRDSSI  349 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             ccccceEEcccccCCceEEEEeCCCCCe
Confidence            43    2222   356899999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-42  Score=286.11  Aligned_cols=285  Identities=17%  Similarity=0.212  Sum_probs=216.9

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .+++...+.+|.++|++++|+|      .+||+++.|+ |++|++..+.. ..+..+....|...|.+++|+  |+++ +
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~------~~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~s--p~~~-~   72 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQ------GILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWR--PHTS-L   72 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEET------TEEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEEC--TTSS-E
T ss_pred             ccccceeeccCCCceeeeccCC------CEEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEEC--CCCC-E
Confidence            3567788999999999999998      3999999998 99999876532 112222122378889888887  8898 9


Q ss_pred             EEEeecCCeEEEEEccC-------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC----eeEEEecc
Q 019117          101 LVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAG  169 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~  169 (346)
                      |++|+.|++|++||+..       .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++..    +++..+. 
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-  150 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQ-  150 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-
Confidence            99999999999999853       345677889999999999999 8999999999999999999532    4556666 


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  249 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  249 (346)
                        +|...|.+++|+| ++.+|++++.|++|++||+....                     ..++..+.+|...|.++.|+
T Consensus       151 --~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~  206 (330)
T 2hes_X          151 --EHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD---------------------WECVAVLNGHEGTVWSSDFD  206 (330)
T ss_dssp             --CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEEC
T ss_pred             --cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC---------------------eeEEEEccCCCCcEEEEEec
Confidence              7999999999999 89999999999999999987621                     13566788999999999998


Q ss_pred             C----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          250 G----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       250 ~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +    .+|++++.|++|++||+........ ........+.. |...|.+++|++++   +|++++.||.|++||..+++
T Consensus       207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~---~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ-QEWVCEAILPDVHKRQVYNVAWGFNG---LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             CSSSSCEEEEEETTSCEEEEEEEEECTTSC-EEEEEEEECCSCCSSCEEEEEECTTS---CEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeeEEEEEeCCCeEEEEEecCCCcccc-ceeEEeeecccccccceEEEEEcCCC---EEEEEeCCCEEEEEEcCCCc
Confidence            3    4899999999999999976532110 01113344444 78899999999664   79999999999999998774


Q ss_pred             cceee----eeee-eEEEEEecC--CCCC
Q 019117          325 PVLIA----RLIC-FSLHVKYNP--QSVY  346 (346)
Q Consensus       325 ~~~~~----~~~~-~~~~~~~sp--dg~~  346 (346)
                      .....    .+.. .+.+++|+|  ++++
T Consensus       283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          283 WKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             EEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             eEEEeccccccccceEEEEEEecCCCceE
Confidence            22211    1223 588999999  5653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-42  Score=291.96  Aligned_cols=283  Identities=21%  Similarity=0.326  Sum_probs=223.9

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecC-------------CCccceEEEEEEEcCCC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDE-------------DKEESFYTVSWACNVDG   97 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~   97 (346)
                      +|.+.|++++|+|    +|++||+++++.+++|+..+++.+..+..+...             .+...|.+++|+  |+|
T Consensus        62 ~h~~~V~~v~fsp----dg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~dg  135 (393)
T 1erj_A           62 DHTSVVCCVKFSN----DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PDG  135 (393)
T ss_dssp             ECSSCCCEEEECT----TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TTS
T ss_pred             CCCCEEEEEEECC----CCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC--CCC
Confidence            6999999999999    789999998777999999988877666533211             112236666665  999


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      + +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++....+.    +...+
T Consensus       136 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v  209 (393)
T 1erj_A          136 K-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGV  209 (393)
T ss_dssp             S-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCE
T ss_pred             C-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCc
Confidence            9 999999999999999999999999999999999999999 88999999999999999999999888886    67789


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      .+++|+|.++.++++++.|+.|++||+++.......                .........|...|.+++|+  +++|++
T Consensus       210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~----------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL----------------DSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE----------------C------CCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee----------------cccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            999999877899999999999999999873321100                00111235789999999998  889999


Q ss_pred             EeecCeEEEEcCCCCCCCCCC---ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-e
Q 019117          256 KSVDNEIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-L  331 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  331 (346)
                      ++.|++|++||+++.......   ........+.+|...|.+++|+|++  .+|++|+.|+.|++||+.+++++.... +
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC--CEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            999999999999875421110   1122445677899999999999999  799999999999999999998765443 4


Q ss_pred             eeeEEEEEecCC
Q 019117          332 ICFSLHVKYNPQ  343 (346)
Q Consensus       332 ~~~~~~~~~spd  343 (346)
                      ...+.+++|+|+
T Consensus       352 ~~~v~~v~~~~~  363 (393)
T 1erj_A          352 RNSVISVAVANG  363 (393)
T ss_dssp             SSCEEEEEECSS
T ss_pred             CCCEEEEEecCC
Confidence            455889998874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.2e-43  Score=291.12  Aligned_cols=255  Identities=17%  Similarity=0.206  Sum_probs=205.4

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .....+|...|++++|+|    ++.+++++.++.|+|||+.+++...... +....|...|.+++|+  |+++ +|++|+
T Consensus        87 ~~~~~~~~~~V~~~~~s~----d~~~l~~s~dg~v~lWd~~~~~~~~~~~-~~~~~h~~~V~~v~~s--pdg~-~l~sgs  158 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVS----EKGILVASDSGAVELWEILEKESLLVNK-FAKYEHDDIVKTLSVF--SDGT-QAVSGG  158 (357)
T ss_dssp             CSEEEECSSCEEEEEEET----TTEEEEEETTSCEEEC--------CCCC-EEECCCSSCEEEEEEC--SSSS-EEEEEE
T ss_pred             ecccCCCCCCEEEEEEcC----CCCEEEEECCCEEEEeeccccceeEEEe-eccCCCCCCEEEEEEC--CCCC-EEEEEe
Confidence            334467999999999999    5666665544449999998876544322 2223478889888876  9998 999999


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      .|+.|++||+.+++.+..+.+|...|.+++|+|++..++++++.|++|++||+++++.+..+... .+...+.+++|+|+
T Consensus       159 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~  237 (357)
T 4g56_B          159 KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPE  237 (357)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTT
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhc
Confidence            99999999999999999999999999999999955568999999999999999998877665421 46778999999996


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C-CEEEEEeecCeE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEI  262 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i  262 (346)
                      ++.+|++|+.|+.|++||+++                       ...+..+..|...|++++|+  + ++|++++.|++|
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~-----------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKN-----------------------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSC-----------------------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             ccceEEEeecccceeEEECCC-----------------------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence            678999999999999999988                       34567788899999999998  3 589999999999


Q ss_pred             EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee-cCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +|||+++++         .+. ..+|...|++++|+| ++  .+|++++.||.|++|++.+..
T Consensus       295 ~iwd~~~~~---------~~~-~~~H~~~V~~vafsP~d~--~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          295 AVLDADFSE---------VFR-DLSHRDFVTGVAWSPLDH--SKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEECTTSCE---------EEE-ECCCSSCEEEEEECSSST--TEEEEEETTSCEEEEECC---
T ss_pred             EEEECCCCc---------EeE-ECCCCCCEEEEEEeCCCC--CEEEEEcCCCeEEEEECCCCC
Confidence            999998875         333 347889999999998 66  689999999999999997643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.6e-41  Score=280.28  Aligned_cols=248  Identities=16%  Similarity=0.241  Sum_probs=213.1

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .+....+..|...|.+++|+|    ++.+|++++.|+ |++|++.+.... .....+  ..|...+.++.|.  +++  .
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~--~~~--~  156 (340)
T 1got_B           87 TNKVHAIPLRSSWVMTCAYAP----SGNYVACGGLDNICSIYNLKTREGNVRVSREL--AGHTGYLSCCRFL--DDN--Q  156 (340)
T ss_dssp             CCEEEEEECSSSCEEEEEECT----TSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--ECCSSCEEEEEEE--ETT--E
T ss_pred             CCcceEeecCCccEEEEEECC----CCCEEEEEeCCCeEEEEECccCCCcceeEEEe--cCCCccEEEEEEC--CCC--c
Confidence            345566788999999999999    789999999998 999998765422 122222  2377888888886  666  5


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +++++.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+++++.+..+.   +|...|+++
T Consensus       157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v  232 (340)
T 1got_B          157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAI  232 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEE
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEE
Confidence            88999999999999999999999999999999999999 88999999999999999999999999988   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe--ecccceEEEEec--CCEEEEE
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~l~~~  256 (346)
                      +|+| ++.+|++++.|++|++||++..+                       .+..+.  .+...|.+++|+  +++|++|
T Consensus       233 ~~~p-~~~~l~s~s~d~~v~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  288 (340)
T 1got_B          233 CFFP-NGNAFATGSDDATCRLFDLRADQ-----------------------ELMTYSHDNIICGITSVSFSKSGRLLLAG  288 (340)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             EEcC-CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEccCCcccceEEEEECCCCCEEEEE
Confidence            9999 89999999999999999998732                       222222  223468999998  8899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +.|+.|++||+.+.+         .+..+.+|...|.+++|+|++  .+|++|+.||.|++||
T Consensus       289 ~~d~~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~s~dg--~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          289 YDDFNCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDG--MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred             CCCCeEEEEEcccCc---------EeeEeecCCCcEEEEEEcCCC--CEEEEEcCCccEEecC
Confidence            999999999998776         677788999999999999999  7899999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-41  Score=301.38  Aligned_cols=282  Identities=17%  Similarity=0.316  Sum_probs=223.9

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEee--eecCCCccceEEEEEEEcCCCC
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS--YVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ..++...+.+|.+.|++++|+|    ++++||+++.|+ |++||..+++....+..  .....|...|.+++|+  |+|+
T Consensus       179 ~~~~~~~l~~H~~~V~~v~fsp----dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~  252 (611)
T 1nr0_A          179 PFKFKSTFGEHTKFVHSVRYNP----DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGT  252 (611)
T ss_dssp             TBEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSS
T ss_pred             CCeEeeeeccccCceEEEEECC----CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCC
Confidence            3566778899999999999999    789999999999 99999988887665531  0011478889888887  9998


Q ss_pred             cEEEEeecCCeEEEEEccCcceee-------------------------------------------eeccCCCceEEEE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHK-------------------------------------------SFVGHGDSINEIR  135 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v~~~~  135 (346)
                       +|++++.|++|++||+.+++.+.                                           .+.+|...|.+++
T Consensus       253 -~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~  331 (611)
T 1nr0_A          253 -KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS  331 (611)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             -EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence             99999999999999998765443                                           3357899999999


Q ss_pred             EeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc---------------------------------------------
Q 019117          136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA---------------------------------------------  170 (346)
Q Consensus       136 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------------  170 (346)
                      |+| ++++|++++.|++|++||+.+++....+...                                             
T Consensus       332 ~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~  410 (611)
T 1nr0_A          332 SSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL  410 (611)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred             EeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeec
Confidence            999 8999999999999999999876554332100                                             


Q ss_pred             -----------C-----------------------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeecee
Q 019117          171 -----------G-----------------------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT  216 (346)
Q Consensus       171 -----------~-----------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  216 (346)
                                 .                       .|...+.+++|+| ++.+|++|+.|++|++||+.....       
T Consensus       411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~-------  482 (611)
T 1nr0_A          411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV-------  482 (611)
T ss_dssp             SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE-------
T ss_pred             CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce-------
Confidence                       0                       0234567889998 889999999999999999876210       


Q ss_pred             ecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCC-CCCCCCCccccccc--cccCCCcC
Q 019117          217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQ--KYPVPECD  291 (346)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~  291 (346)
                                    ..... ..|...|.+++|+  +++|++++.|++|++|++.+ ++         .+.  .+..|...
T Consensus       483 --------------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---------~~~~~~~~~H~~~  538 (611)
T 1nr0_A          483 --------------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---------LAHTNSWTFHTAK  538 (611)
T ss_dssp             --------------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---------ESCCCCCCCCSSC
T ss_pred             --------------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc---------eeeeeeeeecccc
Confidence                          11223 6799999999999  88999999999999999986 33         222  23458899


Q ss_pred             eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce--ee-ee-eeeEEEEEecCCCC
Q 019117          292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--IA-RL-ICFSLHVKYNPQSV  345 (346)
Q Consensus       292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-~~-~~~~~~~~~spdg~  345 (346)
                      |.+++|+||+  ++|++++.|+.|++||+.++....  .. .+ ...+.+++|+|||+
T Consensus       539 V~~v~fspdg--~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~  594 (611)
T 1nr0_A          539 VACVSWSPDN--VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT  594 (611)
T ss_dssp             EEEEEECTTS--SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE
T ss_pred             eeEEEECCCC--CEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE
Confidence            9999999999  799999999999999998865322  22 23 45689999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.5e-41  Score=273.95  Aligned_cols=254  Identities=19%  Similarity=0.256  Sum_probs=217.8

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|..+|.+++|+|    ++++|++|+.|+ |++||+.+++.+..+..     |...|.+++|.  |+++ +|
T Consensus        45 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~l  112 (304)
T 2ynn_A           45 QVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-----HPDYIRSIAVH--PTKP-YV  112 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC--SSSS-EE
T ss_pred             CceeEEeeccCCcEEEEEEeC----CCCEEEEECCCCEEEEEECCCCcEEEEEeC-----CCCcEEEEEEc--CCCC-EE
Confidence            345667889999999999999    789999999998 99999999988777764     77888888876  8898 99


Q ss_pred             EEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          102 VAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      ++|+.|++|++||+.++ .....+.+|...|.+++|+|.++..|++|+.|++|++||++++.....+..  +|...+..+
T Consensus       113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~  190 (304)
T 2ynn_A          113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYV  190 (304)
T ss_dssp             EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEE
T ss_pred             EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc--CCcCcEEEE
Confidence            99999999999999887 455778899999999999996678999999999999999988776666542  567889999


Q ss_pred             EecCC-CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          181 DFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       181 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      .|+|. ++.+|++++.|++|++||+++                       ...+..+..|...|.++.|+  +.+|++++
T Consensus       191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~-----------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  247 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLTIKIWDYQT-----------------------KSCVATLEGHMSNVSFAVFHPTLPIIISGS  247 (304)
T ss_dssp             EECCSTTCCEEEEEETTSEEEEEETTT-----------------------TEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEeCCC-----------------------CccceeeCCCCCCEEEEEECCCCCEEEEEc
Confidence            99862 567999999999999999998                       45677888999999999998  67999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      .|++|++||+.+.+         .+..+..+...+++++|+|++...++++|+.|| +.+|++.+.
T Consensus       248 ~Dg~i~iWd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          248 EDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             TTSCEEEEETTTCC---------EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             CCCeEEEEECCCCc---------eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            99999999999877         677888888999999999998534677777665 778887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-41  Score=303.00  Aligned_cols=280  Identities=19%  Similarity=0.172  Sum_probs=226.2

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee--eeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI--AALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      .+....+.+|.+.|++++|+|    +|++||+|+.|+ |+|||+.+++..  ..+.     .|...|.+++|+  |+|+ 
T Consensus        49 ~~~~~~~~~h~~~v~~~~~sp----dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-----~~~~~v~~v~fs--~dg~-  116 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWD--SESK-  116 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEEC--TTSC-
T ss_pred             cccCeEecCCCCceEEEEECC----CCcEEEEEeCCCCEEEeECCCCcceeeEeec-----ccCCceEEEEEC--CCCC-
Confidence            345567889999999999999    889999999998 999998755432  2232     367788888877  9998 


Q ss_pred             EEEEeecC----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117          100 FLVAGGIN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus       100 ~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                      +|++++.+    +.|++||  +++....+.+|...|.+++|+|++...|++|+.|++|++||..+++.+..+.   +|..
T Consensus       117 ~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~---~H~~  191 (611)
T 1nr0_A          117 RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EHTK  191 (611)
T ss_dssp             EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CCSS
T ss_pred             EEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec---cccC
Confidence            88888765    3677776  5667788899999999999999434479999999999999999999888888   8999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-------eecccceEEEEe
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-------SVHSNYVDCNRW  248 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~  248 (346)
                      .|++++|+| ++.+|++++.|++|++||+.+.+                       ....+       ..|...|.+++|
T Consensus       192 ~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~-----------------------~~~~~~~~~~~~~~h~~~V~~v~~  247 (611)
T 1nr0_A          192 FVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGT-----------------------KTGVFEDDSLKNVAHSGSVFGLTW  247 (611)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCC-----------------------EEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             ceEEEEECC-CCCEEEEEECCCcEEEEECCCCc-----------------------EeeeeccccccccccCCCEEEEEE
Confidence            999999999 89999999999999999998732                       22222       169999999999


Q ss_pred             c--CCEEEEEeecCeEEEEcCCCCCCCCCCc----------------------------------cccccccccCCCcCe
Q 019117          249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEG----------------------------------TADILQKYPVPECDI  292 (346)
Q Consensus       249 ~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~v  292 (346)
                      +  +++|++++.|++|++||+.+++......                                  .......+.+|...|
T Consensus       248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v  327 (611)
T 1nr0_A          248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI  327 (611)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence            8  7899999999999999998765311100                                  011234456789999


Q ss_pred             eEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCCCC
Q 019117          293 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQSV  345 (346)
Q Consensus       293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spdg~  345 (346)
                      .+++|+|++  ++|++++.|+.|++||+.+++.....  .+...+.+++|+|++.
T Consensus       328 ~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~  380 (611)
T 1nr0_A          328 TALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD  380 (611)
T ss_dssp             EEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred             EEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence            999999999  79999999999999999998754432  2445688899998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.5e-41  Score=278.79  Aligned_cols=273  Identities=18%  Similarity=0.232  Sum_probs=209.8

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      ..+|...|++++|+|    ++++||+++.|+ +++|+...+..  +..+.     .|...|.+++|+  |+++ +|++|+
T Consensus        57 ~~~h~~~v~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-----~h~~~v~~v~~s--p~~~-~l~s~s  124 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSP----CGNYLASASFDATTCIWKKNQDDFECVTTLE-----GHENEVKSVAWA--PSGN-LLATCS  124 (345)
T ss_dssp             CSSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEECCC-EEEEEEEC-----CCSSCEEEEEEC--TTSS-EEEEEE
T ss_pred             ccccCCcEEEEEECC----CCCEEEEEECCCcEEEEEccCCCeEEEEEcc-----CCCCCceEEEEe--CCCC-EEEEEE
Confidence            378999999999999    789999999998 99999876542  23332     378889888887  8998 999999


Q ss_pred             cCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee--EEEecccCCCCcceEEE
Q 019117          106 INGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 ~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~  180 (346)
                      .|+.|++||+.++.   .+..+.+|...|.+++|+| ++.+|++++.|++|++||++.++.  ...+.   +|...|+++
T Consensus       125 ~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~---~h~~~v~~l  200 (345)
T 3fm0_A          125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLE---GHESTVWSL  200 (345)
T ss_dssp             TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEE
T ss_pred             CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEec---CCCCceEEE
Confidence            99999999998763   4567788999999999999 889999999999999999987753  45566   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec--CCEEEEEe
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +|+| ++.+|++++.|++|++||...........        ..........+..+.. |...|.+++|+  +..|++++
T Consensus       201 ~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  271 (345)
T 3fm0_A          201 AFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVA--------CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC  271 (345)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEEEECTTCTTCCC--------CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred             EECC-CCCEEEEEeCCCeEEEeccccCCCCccce--------eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence            9999 89999999999999999975422110000        0000011122334443 88899999998  78999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      .|+.|++|+....................+|...|.+++|+|++. .+|++|+.||.|++|++.+++...
T Consensus       272 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          272 GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP-GLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST-TEEEEEETTSCEEEEEECC-----
T ss_pred             CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc-eEEEEcCCCCcEEEEEecCCCCcc
Confidence            999999999876542111111112233467899999999999874 489999999999999999877543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.4e-40  Score=273.39  Aligned_cols=269  Identities=13%  Similarity=0.221  Sum_probs=232.6

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      .+|.+.|++++|+|    ++++|++++++.|++|++.++.....+..+....+...+.+++|.  |+++ +|++++.||.
T Consensus        48 ~~h~~~v~~~~~~~----~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~d~~  120 (337)
T 1gxr_A           48 LNHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGC-TLIVGGEAST  120 (337)
T ss_dssp             ECCSSCCCEEEECS----SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--TTSS-EEEEEESSSE
T ss_pred             ccCCCceEEEEEec----CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc--CCCC-EEEEEcCCCc
Confidence            47999999999999    789999999434999999887765555544444577889888877  8898 9999999999


Q ss_pred             EEEEEccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          110 IRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       110 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |++||+.+++  ....+..|...|.+++|+| +++++++++.|+.|++||+++++.+..+.   .|...|.+++|+| ++
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~  195 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISN-DG  195 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TS
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---cccCceEEEEECC-CC
Confidence            9999999887  5667888999999999999 88999999999999999999999999888   7999999999999 88


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  265 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  265 (346)
                      .++++++.|+.|++||++..+                       .+.. ..+...+.++.|+  ++++++++.|+.|++|
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~~-----------------------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREGR-----------------------QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTE-----------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CEEEEEecCCcEEEEECCCCc-----------------------eEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            999999999999999998832                       2223 2467889999998  7899999999999999


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      |+.+.+          ...+..|...|.+++|+|++  ++|++++.||.|++||+.+++.+........+.+++|+|+|+
T Consensus       252 ~~~~~~----------~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  319 (337)
T 1gxr_A          252 HVNKPD----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK  319 (337)
T ss_dssp             ETTSSC----------EEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSC
T ss_pred             ECCCCC----------eEEEcCCccceeEEEECCCC--CEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCC
Confidence            998765          23566788899999999999  789999999999999999998877666777899999999987


Q ss_pred             C
Q 019117          346 Y  346 (346)
Q Consensus       346 ~  346 (346)
                      +
T Consensus       320 ~  320 (337)
T 1gxr_A          320 Y  320 (337)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.2e-41  Score=304.58  Aligned_cols=281  Identities=20%  Similarity=0.293  Sum_probs=226.5

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .+++...+++|.+.|++|+|+|.   ++++|++|+.|+ |++|++.+..............|...|.+++|+  |+++ +
T Consensus       371 ~l~~~~~l~~H~~~V~~v~~~~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~g~-~  444 (694)
T 3dm0_A          371 GLVLKGTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQ-F  444 (694)
T ss_dssp             SSEEEEEEECCSSCEEEEECCTT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--TTSS-E
T ss_pred             ccchhhhcccCCceeEEEEecCC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--CCCC-E
Confidence            34556678999999999999982   357999999998 999998765432111111112478889888876  8998 9


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      |++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.............+|...|.++
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  523 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV  523 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence            99999999999999999999999999999999999999 88999999999999999987655444443334688999999


Q ss_pred             EecCCCC--cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          181 DFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       181 ~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      +|+| ++  ..+++++.|++|++||++.                       ......+..|...|.+++|+  +++|+++
T Consensus       524 ~~~~-~~~~~~l~s~s~d~~v~vwd~~~-----------------------~~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          524 RFSP-NTLQPTIVSASWDKTVKVWNLSN-----------------------CKLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             EECS-CSSSCEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeC-CCCcceEEEEeCCCeEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            9999 54  6899999999999999987                       33456788899999999998  7899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee----
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI----  332 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----  332 (346)
                      +.|++|++||+.+++         .+..+.. ...|.+++|+|++  .+|++++ ++.|++||+.+++.+......    
T Consensus       580 ~~Dg~i~iwd~~~~~---------~~~~~~~-~~~v~~~~~sp~~--~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~  646 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGK---------KLYSLEA-NSVIHALCFSPNR--YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE  646 (694)
T ss_dssp             ETTSBCEEEETTTTE---------EEECCBC-SSCEEEEEECSSS--SEEEEEE-TTEEEEEETTTTEEEEEECCCCC--
T ss_pred             eCCCeEEEEECCCCc---------eEEEecC-CCcEEEEEEcCCC--cEEEEEc-CCCEEEEECCCCCChhhhccccccc
Confidence            999999999999876         4444443 4579999999998  5666554 567999999998755433211    


Q ss_pred             ----------------eeEEEEEecCCCCC
Q 019117          333 ----------------CFSLHVKYNPQSVY  346 (346)
Q Consensus       333 ----------------~~~~~~~~spdg~~  346 (346)
                                      ..+.+++|||||++
T Consensus       647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~  676 (694)
T 3dm0_A          647 AEKADNSGPAATKRKVIYCTSLNWSADGST  676 (694)
T ss_dssp             --------------CCCCEEEEEECTTSSE
T ss_pred             cccccccccccCCceeEEeeeEEEcCCCCE
Confidence                            12578999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.6e-41  Score=273.50  Aligned_cols=258  Identities=19%  Similarity=0.295  Sum_probs=206.7

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ..+.+|.+.|++++|+|    ++++||+|+.|+ |+||++...  +.+..+.     .|...|.+++|+...+++ +|++
T Consensus         3 ~~~~~h~~~V~~~~~s~----~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~-~l~s   72 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDY----YGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-ILAS   72 (297)
T ss_dssp             EECCSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-----CCSSCEEEEEECCGGGCS-EEEE
T ss_pred             eeccCCcCceEEEEECC----CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-----cccCCeEEEEecCCCcCC-EEEE
Confidence            45689999999999999    789999999999 999998643  3444443     378899999887333477 9999


Q ss_pred             eecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCee--EEEecccCCCCcceE
Q 019117          104 GGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVL  178 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~  178 (346)
                      |+.|++|++||+.+++  .+..+.+|...|.+++|+|+. +.+|++++.|++|++||++++..  ...+.   +|...|.
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~h~~~v~  149 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVN  149 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---CCSSCEE
T ss_pred             EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---cccCccc
Confidence            9999999999998874  556778899999999999931 78999999999999999987632  33444   7999999


Q ss_pred             EEEecCCC------------CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          179 SVDFHPSD------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       179 ~~~~~~~~------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      +++|+|..            +.+|++|+.|++|++||++....                   .......+.+|...|.++
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-------------------~~~~~~~l~~H~~~V~~v  210 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWVRDV  210 (297)
T ss_dssp             EEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCEEEE
T ss_pred             eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-------------------eEEEEEEecCCCCceEEE
Confidence            99999831            46899999999999999987321                   011345678899999999


Q ss_pred             EecC-----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          247 RWLG-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       247 ~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +|++     .+|++++.|++|++||++......    ...+.....|...|.+++|+|++  .+|++++.||.|++|+..
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g--~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSS--CCEEEEETTSCEEEEEEC
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCCCCCcc----ceeeeecccCCCcEEEEEECCCC--CEEEEEcCCCcEEEEEEC
Confidence            9983     589999999999999997643100    00111124567889999999999  789999999999999986


Q ss_pred             C
Q 019117          322 S  322 (346)
Q Consensus       322 ~  322 (346)
                      .
T Consensus       285 ~  285 (297)
T 2pm7_B          285 L  285 (297)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-40  Score=274.81  Aligned_cols=282  Identities=17%  Similarity=0.236  Sum_probs=230.9

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .+++.+..+|+||.+.|++|+|+|+   .+++||||+.|+ |+|||+.+.+............|...|.+++|+  |+++
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--~dg~   99 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--SDGQ   99 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--TTSS
T ss_pred             CCceEEEEEECCccCCEEEEEEeCC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--CCCC
Confidence            4566778889999999999999992   358999999998 999999876644333322234578889888887  9999


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                       +|++++.|+.|++|+............+...+..+.+++ .+..|++++.|+.+++||+..........  .+|...+.
T Consensus       100 -~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~--~~~~~~v~  175 (340)
T 4aow_A          100 -FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVS  175 (340)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECS--SSCSSCEE
T ss_pred             -EEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEe--ccccCccc
Confidence             999999999999999999988888888899999999999 88999999999999999998665443322  26899999


Q ss_pred             EEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      .++|++.. ..++++++.|+.|++||++.                       ...+..+..|...|.+++|+  +++|++
T Consensus       176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-----------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          176 CVRFSPNSSNPIIVSCGWDKLVKVWNLAN-----------------------CKLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTT-----------------------TEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ceEEccCCCCcEEEEEcCCCEEEEEECCC-----------------------CceeeEecCCCCcEEEEEECCCCCEEEE
Confidence            99998733 45788999999999999998                       44566778899999999998  789999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-----
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-----  330 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----  330 (346)
                      ++.|+.|++||+++.+         .+..+..+ ..|.+++|+|++   .+++++.|+.|++||++++..+....     
T Consensus       233 ~s~Dg~i~iwd~~~~~---------~~~~~~~~-~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  299 (340)
T 4aow_A          233 GGKDGQAMLWDLNEGK---------HLYTLDGG-DIINALCFSPNR---YWLCAATGPSIKIWDLEGKIIVDELKQEVIS  299 (340)
T ss_dssp             EETTCEEEEEETTTTE---------EEEEEECS-SCEEEEEECSSS---SEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred             EeCCCeEEEEEeccCc---------eeeeecCC-ceEEeeecCCCC---ceeeccCCCEEEEEECCCCeEEEecccccee
Confidence            9999999999999876         45555544 579999999987   46677789999999998875443322     


Q ss_pred             -----eeeeEEEEEecCCCCC
Q 019117          331 -----LICFSLHVKYNPQSVY  346 (346)
Q Consensus       331 -----~~~~~~~~~~spdg~~  346 (346)
                           +...+++++|+|||++
T Consensus       300 ~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          300 TSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             ----CCCCCEEEEEECTTSSE
T ss_pred             eeccCCCCCEEEEEECCCCCE
Confidence                 3345899999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-41  Score=277.84  Aligned_cols=262  Identities=20%  Similarity=0.317  Sum_probs=197.7

Q ss_pred             eeeeec-cc-CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           24 RVTNKL-QE-GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        24 ~~~~~~-~~-h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      ++...+ .+ |...|++++|+|    ++.+||+++.|+ |++|+.....    ....+..+  ..|...|.+++|+  |+
T Consensus        47 ~~~~~~~~~~h~~~v~~v~~sp----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~s--p~  118 (330)
T 2hes_X           47 TLIDVLDETAHKKAIRSVAWRP----HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAWS--ND  118 (330)
T ss_dssp             EEEEEECTTCCCSCEEEEEECT----TSSEEEEEETTSCEEEEEC-------CCCEEEEEE--C----CEEEEEEC--TT
T ss_pred             EEEEEEecCCccCCEEEEEECC----CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEEC--CC
Confidence            444445 44 999999999999    789999999998 9999985321    11112222  2477889888877  89


Q ss_pred             CCcEEEEeecCCeEEEEEccCc----ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC--eeEEEeccc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--ICILIFAGA  170 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~  170 (346)
                      ++ +|++|+.|++|++||+...    +.+..+.+|...|.+++|+| ++.+|++++.|++|++||..++  +++..+.  
T Consensus       119 g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--  194 (330)
T 2hes_X          119 GY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLN--  194 (330)
T ss_dssp             SC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEEC--
T ss_pred             CC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--
Confidence            98 9999999999999999432    45678889999999999999 8899999999999999999776  5677777  


Q ss_pred             CCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEE
Q 019117          171 GGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNR  247 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  247 (346)
                       +|...|.+++|+| +  +.+|++++.|++|++||++......               .........+.. |...|.+++
T Consensus       195 -~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~---------------~~~~~~~~~~~~~h~~~v~~v~  257 (330)
T 2hes_X          195 -GHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDD---------------QQEWVCEAILPDVHKRQVYNVA  257 (330)
T ss_dssp             -CCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTS---------------CEEEEEEEECCSCCSSCEEEEE
T ss_pred             -CCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccc---------------cceeEEeeecccccccceEEEE
Confidence             8999999999999 5  6789999999999999998632100               000112233333 889999999


Q ss_pred             ec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc-CeeEEEEee--cCCcceEEEEcCCCcEEEEEcCC
Q 019117          248 WL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSC--DFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       248 ~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      |+ +.+|++++.|++|++||..+++.      .........|.. .|.+++|+|  ++  .+|++|+.||.|++||+++
T Consensus       258 ~s~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~h~~~~v~~v~~~~~~~~--~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          258 WGFNGLIASVGADGVLAVYEEVDGEW------KVFAKRALCHGVYEINVVKWLELNGK--TILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ECTTSCEEEEETTSCEEEEEEETTEE------EEEEEESCTTTTSCEEEEEEC-------CCEEEEETTSEEEEEEC--
T ss_pred             EcCCCEEEEEeCCCEEEEEEcCCCce------EEEeccccccccceEEEEEEecCCCc--eEEEEecCCCcEEEEEecc
Confidence            98 67899999999999999876520      001223355666 899999999  55  6899999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-40  Score=271.91  Aligned_cols=269  Identities=14%  Similarity=0.220  Sum_probs=214.7

Q ss_pred             eeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEE
Q 019117           10 PLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT   88 (346)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~   88 (346)
                      ...|.+.........+...+++|...|.+++|+|    ++.+|++++.|+ |++||+.+++.+..+..     |...|.+
T Consensus        42 v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-----h~~~v~~  112 (319)
T 3frx_A           42 LISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA----DGAYALSASWDKTLRLWDVATGETYQRFVG-----HKSDVMS  112 (319)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEE
T ss_pred             EEEecCCCCCccccccceEEeCCcccEEEEEECC----CCCEEEEEeCCCEEEEEECCCCCeeEEEcc-----CCCcEEE
Confidence            3445444322233345677899999999999999    789999999998 99999999988777664     7778888


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-----CCceEEEeeCCCCEEEEecCCCee
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-----KPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      ++|.  |++. +|++|+.|++|++||++ ++.+..+.+|...|.++.|.|.     ++..+++++.|+.|++||+++.+.
T Consensus       113 ~~~~--~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  188 (319)
T 3frx_A          113 VDID--KKAS-MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI  188 (319)
T ss_dssp             EEEC--TTSC-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEc--CCCC-EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence            8776  8888 99999999999999986 5677788899999999999983     234899999999999999999998


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ...+.   +|...|.+++|+| ++.+|++++.||.|++||++.                       ...+..+. +...|
T Consensus       189 ~~~~~---~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~-----------------------~~~~~~~~-~~~~v  240 (319)
T 3frx_A          189 EADFI---GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA-----------------------KKAMYTLS-AQDEV  240 (319)
T ss_dssp             EEEEC---CCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTT-----------------------TEEEEEEE-CCSCE
T ss_pred             heeec---CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEec-CCCcE
Confidence            88888   7999999999999 999999999999999999988                       23344454 34679


Q ss_pred             EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      .+++|+  +.++++++ ++.+++|++.......... .........+...+.+++|+||+  ++|++|+.||.|++||+.
T Consensus       241 ~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg--~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          241 FSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADG--QTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEEC-CCCTTCCGGGCCCEEEEEECTTS--SEEEEEETTSCEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccC-ccccccccCcCcceeEEEECCCC--CEEEEeecCceEEEEEEe
Confidence            999998  66676665 5569999998654210000 00011112356678999999999  799999999999999998


Q ss_pred             CC
Q 019117          322 SS  323 (346)
Q Consensus       322 ~~  323 (346)
                      ++
T Consensus       317 t~  318 (319)
T 3frx_A          317 TA  318 (319)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.9e-40  Score=274.40  Aligned_cols=246  Identities=19%  Similarity=0.232  Sum_probs=211.2

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc------eeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG------VIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      +....+..|...|.+++|+|    ++.+||+++.|+ +++|++....      ....+.     .|...|.+++|.  |+
T Consensus        97 ~~~~~~~~~~~~v~~~~~sp----~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~  165 (354)
T 2pbi_B           97 NKEHAVTMPCTWVMACAYAP----SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-----MHTNYLSACSFT--NS  165 (354)
T ss_dssp             CEEEEEECSSSCCCEEEECT----TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-----ECSSCEEEEEEC--SS
T ss_pred             CcceEEecCCCCEEEEEECC----CCCEEEEeeCCCCEEEEEEeccccccccccceeee-----ccCCcEEEEEEe--CC
Confidence            44556678899999999999    789999999999 9999986432      222232     277788888776  88


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                      +. .|++++.|++|++||+.+++.+..+.+|...|.+++|+|. ++++|++|+.||+|++||+++++++..+.   +|..
T Consensus       166 ~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~  241 (354)
T 2pbi_B          166 DM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THES  241 (354)
T ss_dssp             SS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSS
T ss_pred             CC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCC
Confidence            88 9999999999999999999999999999999999999884 35799999999999999999999999888   7999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cccceEEEEec--CC
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWL--GD  251 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~  251 (346)
                      .|++++|+| ++.+|++++.|++|++||++...                       .+..+..  +...+.++.|+  +.
T Consensus       242 ~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~s~~g~  297 (354)
T 2pbi_B          242 DVNSVRYYP-SGDAFASGSDDATCRLYDLRADR-----------------------EVAIYSKESIIFGASSVDFSLSGR  297 (354)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEcCCCcccceeEEEEeCCCC
Confidence            999999999 88999999999999999998732                       1222222  23467889998  88


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +|++++.|++|++||+.+++         .+..+.+|...|.+++|+|++  .+|++|+.||.|++|+
T Consensus       298 ~l~~g~~d~~i~vwd~~~~~---------~~~~l~~h~~~v~~l~~spdg--~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          298 LLFAGYNDYTINVWDVLKGS---------RVSILFGHENRVSTLRVSPDG--TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCS---------EEEEECCCSSCEEEEEECTTS--SCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCcEEEEECCCCc---------eEEEEECCCCcEEEEEECCCC--CEEEEEcCCCCEEecC
Confidence            99999999999999998776         567788999999999999999  7999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-40  Score=292.98  Aligned_cols=266  Identities=22%  Similarity=0.354  Sum_probs=228.2

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      +....+.+|...|++++|+|    ++.+|++++.|+ |++||... ..+..+.     .+...+.+++++  |+++ +|+
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~----~~~~l~t~~~d~~i~~w~~~~-~~~~~~~-----~~~~~v~~~~~s--~~g~-~l~  360 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSP----DGQTIASASDDKTVKLWNRNG-QHLQTLT-----GHSSSVWGVAFS--PDGQ-TIA  360 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTS-CEEEEEC-----CCSSCEEEEEEC--TTSS-EEE
T ss_pred             cEEEEEecCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeCCC-CeeEEEe-----CCCCCEEEEEEC--CCCC-EEE
Confidence            45567789999999999999    789999999988 99999653 4444443     366778777766  9999 999


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      +++.|+.|++||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||. +++.+..+.   +|...|++++|
T Consensus       361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~---~~~~~v~~~~~  434 (577)
T 2ymu_A          361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVWGVAF  434 (577)
T ss_dssp             EEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEE---CCSSCEEEEEE
T ss_pred             EEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEec---CCCCCeEEEEE
Confidence            9999999999995 5778888999999999999999 8999999999999999996 577777777   79999999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN  260 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~  260 (346)
                      +| ++.+|++++.|+.|++||+..                        ..+..+..|...|.+++|+  +++|++++.|+
T Consensus       435 s~-d~~~l~~~~~d~~v~~w~~~~------------------------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          435 SP-DDQTIASASDDKTVKLWNRNG------------------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTS------------------------CEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CC-CCCEEEEEcCCCEEEEEECCC------------------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            99 889999999999999999754                        3456778899999999998  78999999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeEEEEE
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFSLHVK  339 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~  339 (346)
                      +|++||.. ++         .+..+.+|...|++++|+|++  ++|++++.||.|++||. +++.+.. ..+.+.+++++
T Consensus       490 ~i~iw~~~-~~---------~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~  556 (577)
T 2ymu_A          490 TVKLWNRN-GQ---------LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA  556 (577)
T ss_dssp             EEEEEETT-SC---------EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred             EEEEEcCC-CC---------EEEEEeCCCCCEEEEEEcCCC--CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence            99999964 33         677888999999999999999  78999999999999996 4554443 33456799999


Q ss_pred             ecCCCCC
Q 019117          340 YNPQSVY  346 (346)
Q Consensus       340 ~spdg~~  346 (346)
                      |+|||+|
T Consensus       557 fs~dg~~  563 (577)
T 2ymu_A          557 FSPDGQT  563 (577)
T ss_dssp             ECTTSSC
T ss_pred             EcCCCCE
Confidence            9999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-41  Score=276.94  Aligned_cols=258  Identities=21%  Similarity=0.282  Sum_probs=200.9

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      .+.+|.+.|++++|+|    ++++||+|+.|+ |+|||+.++..  +..+.     .|...|.+++|+...+++ +|++|
T Consensus         8 ~~~~H~~~V~~v~~s~----~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~-~l~s~   77 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY----YGTRLATCSSDRSVKIFDVRNGGQILIADLR-----GHEGPVWQVAWAHPMYGN-ILASC   77 (316)
T ss_dssp             ------CCEEEEEECG----GGCEEEEEETTTEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEECCGGGSS-CEEEE
T ss_pred             ecccccCeEEEeeEcC----CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-----CCCccEEEEEeCCCCCCC-EEEEE
Confidence            4579999999999999    789999999998 99999987643  23333     378899999887322466 99999


Q ss_pred             ecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          105 GINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      +.|++|++||+.+++  ....+.+|...|.+++|+|+. +.+|++|+.|++|++||++.+..........+|...|.+++
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            999999999998874  566788899999999999932 77999999999999999987643322222237999999999


Q ss_pred             ecCCC----------------CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE
Q 019117          182 FHPSD----------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  245 (346)
Q Consensus       182 ~~~~~----------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (346)
                      |+|+.                +.+|++++.|+.|++||++....                    ......+..|...|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------------------~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------------------WKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------------------EEEEECCBCCSSCEEE
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------------------cceeeecccCCCceEE
Confidence            99831                36899999999999999975210                    1234567789999999


Q ss_pred             EEec--C----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          246 NRWL--G----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       246 ~~~~--~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      ++|+  +    ++|++++.|++|++|++.+.....     .....+..|...|.+++|+|++  .+|++++.|+.|++|+
T Consensus       218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g--~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITA--NILAVSGGDNKVTLWK  290 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTT--CCEEEEESSSCEEEEE
T ss_pred             EEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCC--CEEEEEcCCCeEEEEE
Confidence            9998  3    689999999999999997632100     0122334567899999999999  7899999999999999


Q ss_pred             cCC
Q 019117          320 LQS  322 (346)
Q Consensus       320 ~~~  322 (346)
                      ...
T Consensus       291 ~~~  293 (316)
T 3bg1_A          291 ESV  293 (316)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.7e-40  Score=281.56  Aligned_cols=271  Identities=13%  Similarity=0.136  Sum_probs=229.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc------eeeeEeeeecCCCccceEEEEEEEcC
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG------VIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      ......+.+|.++|++++|+|      .+|++++.|+ |++|++.+++      ....+.     .|...|.+++|.  |
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~   72 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-----VHKSGLHHVDVL--Q   72 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-----CCTTCEEEEEEE--E
T ss_pred             hhhhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-----cCCCcEEEEEEe--c
Confidence            456677899999999999987      6999999888 9999998877      444444     377889999888  6


Q ss_pred             C----C---CcEEEEeecCCeEEEEEccCcce-----eeeeccC-----CCceEEEEEe----CCCCce-EEEeeCCCCE
Q 019117           96 D----G---IPFLVAGGINGIIRVIDVSNEKL-----HKSFVGH-----GDSINEIRTQ----PLKPSL-VVSASKDESV  153 (346)
Q Consensus        96 ~----~---~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~d~~i  153 (346)
                      +    +   + +|++++.||.|++||+.+++.     ...+..|     ...|.+++|+    | ++.+ |++++.||.|
T Consensus        73 ~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i  150 (397)
T 1sq9_A           73 AIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTT  150 (397)
T ss_dssp             EEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCE
T ss_pred             ccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcE
Confidence            6    7   7 999999999999999998887     8888888     5999999999    8 7888 9999999999


Q ss_pred             EEEecCC------CeeEE-----Eecc----cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117          154 RLWNVQT------GICIL-----IFAG----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       154 ~iwd~~~------~~~~~-----~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  218 (346)
                      ++||+++      ++.+.     .+..    ...|...|.+++|+| ++ ++++++.|+.|++||++.            
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~------------  216 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST------------  216 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT------------
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCC------------
Confidence            9999988      66555     5530    014889999999999 77 999999999999999987            


Q ss_pred             CCCCCCCCccceeceEEEee---c---ccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccccC
Q 019117          219 DLPSKFPTKYVQFPVFIASV---H---SNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPV  287 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~  287 (346)
                                 ...+..+..   |   ...|.+++|+  +++|++++.|   +.|++||+++++         .+..+..
T Consensus       217 -----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---------~~~~~~~  276 (397)
T 1sq9_A          217 -----------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---------RIGSLSV  276 (397)
T ss_dssp             -----------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECB
T ss_pred             -----------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---------ccceecc
Confidence                       345666777   8   8999999998  8899999999   999999999876         5666666


Q ss_pred             -------------CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-------e---------------e
Q 019117          288 -------------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-------L---------------I  332 (346)
Q Consensus       288 -------------~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~---------------~  332 (346)
                                   |...|.+++|+|++  .+|++++.||.|++||+.+++.+..+.       +               .
T Consensus       277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  354 (397)
T 1sq9_A          277 PTHSSQASLGEFAHSSWVMSLSFNDSG--ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE  354 (397)
T ss_dssp             C--------CCBSBSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             CcccccccccccccCCcEEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence                         88999999999999  799999999999999999998776665       2               5


Q ss_pred             eeEEEEEecCCC
Q 019117          333 CFSLHVKYNPQS  344 (346)
Q Consensus       333 ~~~~~~~~spdg  344 (346)
                      ..+.+++|+|+|
T Consensus       355 ~~v~~~~~~~~g  366 (397)
T 1sq9_A          355 PGVFDVKFLKKG  366 (397)
T ss_dssp             CCEEEEEEECTT
T ss_pred             CceeEEEecccc
Confidence            668999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-39  Score=275.92  Aligned_cols=256  Identities=21%  Similarity=0.336  Sum_probs=209.7

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      .|++++|+|    ++++||+|+.|+ |++||+.+++....+..     |...|.+++|.  |+++ +|++++.|++|++|
T Consensus       125 ~v~~v~~s~----dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~--p~~~-~l~s~s~d~~v~iw  192 (393)
T 1erj_A          125 YIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQG-----HEQDIYSLDYF--PSGD-KLVSGSGDRTVRIW  192 (393)
T ss_dssp             BEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--TTSS-EEEEEETTSEEEEE
T ss_pred             eEEEEEECC----CCCEEEEEcCCCeEEEEECCCCcEEEEEcc-----CCCCEEEEEEc--CCCC-EEEEecCCCcEEEE
Confidence            499999999    789999999998 99999988877666653     77788888876  8998 99999999999999


Q ss_pred             EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc----cCCCCcceEEEEecCCCCcE
Q 019117          114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----AGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~  189 (346)
                      |+.+++....+. +...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+..    ..+|...|.+++|+| ++.+
T Consensus       193 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~  270 (393)
T 1erj_A          193 DLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS  270 (393)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSE
T ss_pred             ECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCE
Confidence            999998877776 5678999999997788999999999999999999988777631    126899999999999 8999


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~  267 (346)
                      |++++.|+.|++||++........           ...........+.+|...|.+++|+  +.+|++++.|+.|++||+
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~-----------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDS-----------KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEEEETTSEEEEEEC--------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEEEeCCCEEEEEECCCCCCcccc-----------cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999873321100           0001123455677899999999998  789999999999999999


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecC----CcceEEEEcCCCcEEEEEcCCCC
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF----HYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      .+++         .+..+.+|...|.+++|+++.    .+.+|++|+.||.|++|++...+
T Consensus       340 ~~~~---------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          340 KSGN---------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             TTCC---------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             CCCe---------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            9876         677888999999999998731    12689999999999999987643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-39  Score=266.89  Aligned_cols=249  Identities=21%  Similarity=0.356  Sum_probs=213.2

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|...|.+++|+|    ++++|++++.|+ |++||+.+++.+..+..     |...|.+++|.  |+++ +|
T Consensus        55 ~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~-~l  122 (312)
T 4ery_A           55 GKFEKTISGHKLGISDVAWSS----DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFN--PQSN-LI  122 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC--SSSS-EE
T ss_pred             cccchhhccCCCceEEEEEcC----CCCEEEEECCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEc--CCCC-EE
Confidence            345567789999999999999    789999999998 99999999888777664     66778777776  8888 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++|+.|+.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..  .+...+..++
T Consensus       123 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~  199 (312)
T 4ery_A          123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVK  199 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEE
Confidence            9999999999999999999999999999999999999 889999999999999999999988877652  4667899999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE--Eec---CCEEEEE
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN--RWL---GDFILSK  256 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~---~~~l~~~  256 (346)
                      |+| ++.+|++++.|+.|++||++..                       ..+..+..|...+.++  .+.   +.+|+++
T Consensus       200 ~~~-~~~~l~~~~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          200 FSP-NGKYILAATLDNTLKLWDYSKG-----------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             ECT-TSSEEEEEETTTEEEEEETTTT-----------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             ECC-CCCEEEEEcCCCeEEEEECCCC-----------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence            999 8999999999999999999883                       3344455555433221  222   7799999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcC
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQ  321 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~  321 (346)
                      +.||.|++||+.+++         .+..+.+|...|.+++|+|++  .+|++++  .|+.|++|+..
T Consensus       256 ~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          256 SEDNLVYIWNLQTKE---------IVQKLQGHTDVVISTACHPTE--NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CTTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECSSS--SEEEEEECTTTCCEEEEECC
T ss_pred             CCCCEEEEEECCCch---------hhhhhhccCCcEEEEeecCcC--CceEEEEccCCccEEEecCC
Confidence            999999999999876         678888999999999999999  6888876  69999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-39  Score=268.71  Aligned_cols=257  Identities=13%  Similarity=0.169  Sum_probs=203.4

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      .+...+.+|...|++++|+|    ++.++++++.|+ |++||+.+++.+..+..     |...|.+++|+  |+++ +|+
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~----~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-----h~~~v~~v~~s--p~~~-~l~  134 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQ----ENCFAISSSWDKTLRLWDLRTGTTYKRFVG-----HQSEVYSVAFS--PDNR-QIL  134 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECS----STTEEEEEETTSEEEEEETTSSCEEEEEEC-----CCSCEEEEEEC--SSTT-EEE
T ss_pred             cccchhccCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEEEcC-----CCCcEEEEEEC--CCCC-EEE
Confidence            45667899999999999999    789999999998 99999999888777664     77788888876  8998 999


Q ss_pred             EeecCCeEEEEEccCcceeee--eccCCCceEEEEEeCCCC----------ceEEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117          103 AGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKP----------SLVVSASKDESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  170 (346)
                      +++.|+.|++||+........  ...|...|.+++|+| ..          .+|++++.|+.|++||. ..+....+.  
T Consensus       135 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~--  210 (343)
T 2xzm_R          135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK--  210 (343)
T ss_dssp             EEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE--
T ss_pred             EEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc--
Confidence            999999999999974332222  236889999999999 44          68999999999999994 566777777  


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                       +|...|.+++|+| ++.+|++++.|+.|++||++...                      .+...+ .+...|.+++|+ 
T Consensus       211 -~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~----------------------~~~~~~-~~~~~v~~v~~sp  265 (343)
T 2xzm_R          211 -AHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLT----------------------YPQREF-DAGSTINQIAFNP  265 (343)
T ss_dssp             -CCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCS----------------------SCSEEE-ECSSCEEEEEECS
T ss_pred             -CccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCc----------------------ccceee-cCCCcEEEEEECC
Confidence             7999999999999 99999999999999999995421                      111122 345669999998 


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCC--CCc--cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSP--GEG--TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ...+++++.|+.|++||+.+.+...  ...  .........+|...|.+++|+|++  .+|++|+.||.|++|+++++
T Consensus       266 ~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          266 KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG--KKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS--CCEEEEETTSEEEEEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC--CeEEEecCCceEEEEEEEcc
Confidence            3334456678899999998765322  000  001112233677889999999999  78999999999999998765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-39  Score=262.35  Aligned_cols=269  Identities=16%  Similarity=0.220  Sum_probs=230.2

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ...+++...+.+|.+.|++++| |    ++.+|++++.|+ |++||+.++.....+..     |...+.+++|.  |+++
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~   72 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDDQWLGTVVYT-----GQGFLNSVCYD--SEKE   72 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESSSEEEEEEEE-----CSSCEEEEEEE--TTTT
T ss_pred             cccHHHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCCCEEEEEeec-----CCccEEEEEEC--CCCC
Confidence            3457788899999999999999 7    678999999998 99999988777666654     67788888887  8898


Q ss_pred             cEEEEeecCCeEEEEEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           99 PFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                       +|++++.||.|++|++...   +.+..+.+|...|.++.|.   +.++++++.|+.|++||  .++.+..+.   .|..
T Consensus        73 -~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~---~~~~  143 (313)
T 3odt_A           73 -LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQ---AHNA  143 (313)
T ss_dssp             -EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEE---CCSS
T ss_pred             -EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecc---cCCC
Confidence             9999999999999998654   5677888999999999994   46999999999999999  677777887   7999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec-CCEE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL-GDFI  253 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~l  253 (346)
                      .+.+++|+|.++.++++++.|+.|++||...                         ....+.. |...+.++.|+ ...+
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~  198 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------------------VIKTFSGIHNDVVRHLAVVDDGHF  198 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------------------EEEEECSSCSSCEEEEEEEETTEE
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------------------eEEEEeccCcccEEEEEEcCCCeE
Confidence            9999999876788999999999999999544                         3444555 88899999998 5559


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-  332 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-  332 (346)
                      ++++.|+.|++||+++++         .+..+..|...|.+++|+|++   .|++++.||.|++||+.++++....... 
T Consensus       199 ~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGD---------VLRTYEGHESFVYCIKLLPNG---DIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             EEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS---CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             EEccCCCeEEEEECCchh---------hhhhhhcCCceEEEEEEecCC---CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            999999999999999876         677888899999999999998   4889999999999999999877665544 


Q ss_pred             eeEEEEEecCCCCC
Q 019117          333 CFSLHVKYNPQSVY  346 (346)
Q Consensus       333 ~~~~~~~~spdg~~  346 (346)
                      ..+.+++|+|+|++
T Consensus       267 ~~i~~~~~~~~~~~  280 (313)
T 3odt_A          267 ISIWSVDCMSNGDI  280 (313)
T ss_dssp             SCEEEEEECTTSCE
T ss_pred             ceEEEEEEccCCCE
Confidence            36899999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-40  Score=280.60  Aligned_cols=256  Identities=17%  Similarity=0.266  Sum_probs=209.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee----eeEeeeecCCCccceEEEEEEEcCCC
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (346)
                      .+....+.+|...|.+++|+|    ++++||+++.|+ +++|++.+....    .....  ...|...+.++.|.  |++
T Consensus        98 ~~~~~~~~~h~~~v~~~~~s~----~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~gh~~~v~~~~~~--~~~  169 (380)
T 3iz6_a           98 SQKTHAIKLHCPWVMECAFAP----NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV--LTGHKGYASSCQYV--PDQ  169 (380)
T ss_dssp             TEEEEEEECCCTTCCCCEECT----TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCB--CCCCSSCCCCCBCC--SSS
T ss_pred             CccceEEecCCCCEEEEEECC----CCCEEEEeeCCCcEEEEECCCCccccCCccceee--ccCCCcceEEEEEe--cCC
Confidence            345667889999999999999    789999999999 999998653211    11111  12366777777666  665


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeee-----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccC
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAG  171 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~  171 (346)
                      ...|++|+.|++|++||+.+++.+..+     .+|...|.+++|++.++++|++|+.|++|++||++ .++.+..+.   
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~---  246 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH---  246 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC---
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC---
Confidence            447999999999999999999988776     67999999999988678999999999999999998 456777777   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-------cccceE
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-------HSNYVD  244 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~  244 (346)
                      +|...|++++|+| ++.+|++++.|++|++||+++...                       +..+..       +...|+
T Consensus       247 ~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~  302 (380)
T 3iz6_a          247 GHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQ-----------------------LQVYNREPDRNDNELPIVT  302 (380)
T ss_dssp             CCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEE-----------------------EEEECCCCSSSCCSSCSCS
T ss_pred             CcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcE-----------------------EEEecccccccccccCceE
Confidence            7999999999999 899999999999999999998432                       222222       223478


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc----cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      +++|+  +++|++|+.||.|++||+..++         .+..+    .+|.+.|.+++|+|++  .+|++|+.||.|++|
T Consensus       303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          303 SVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVLNLGTLQNSHEGRISCLGLSSDG--SALCTGSWDKNLKIW  371 (380)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEETTTCC---------EEEEECCSCSSCCCCCCEEEECSSS--SEEEEECTTSCEEEE
T ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCc---------eEEEEecccCCCCCceEEEEECCCC--CEEEEeeCCCCEEEE
Confidence            89998  8899999999999999998765         33333    5788999999999999  799999999999999


Q ss_pred             EcCCCC
Q 019117          319 ELQSSP  324 (346)
Q Consensus       319 d~~~~~  324 (346)
                      ++...+
T Consensus       372 ~~~~~~  377 (380)
T 3iz6_a          372 AFSGHR  377 (380)
T ss_dssp             ECCSSS
T ss_pred             ecCCCc
Confidence            998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.9e-39  Score=272.64  Aligned_cols=285  Identities=14%  Similarity=0.131  Sum_probs=222.0

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCc-cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CC
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYF-NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DG   97 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~   97 (346)
                      ..+++...+.+|.+.|++++|+|    ++ .+||+++.|+ |++||+.++.....+..   ..|...|.+++|+  | ++
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~--~~~~  131 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHP----THPTTVAVGSKGGDIILWDYDVQNKTSFIQG---MGPGDAITGMKFN--QFNT  131 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECS----SCTTEEEEEEBTSCEEEEETTSTTCEEEECC---CSTTCBEEEEEEE--TTEE
T ss_pred             cccceEEeccCCCCCEEEEEECC----CCCCEEEEEcCCCeEEEEeCCCcccceeeec---CCcCCceeEEEeC--CCCC
Confidence            45677888899999999999999    66 8999999988 99999988776655532   2478899998887  7 45


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeecc---CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      . +|++++.|+.|++||+.+ +.+..+..   |...|.+++|+| ++.+|++++.|+.|++||+ +++.+..+.   +|.
T Consensus       132 ~-~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~---~h~  204 (383)
T 3ei3_B          132 N-QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEK---LHK  204 (383)
T ss_dssp             E-EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEE---CSS
T ss_pred             C-EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEec---cCC
Confidence            6 999999999999999986 44445543   458899999999 8899999999999999999 577788887   799


Q ss_pred             cceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---C
Q 019117          175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G  250 (346)
Q Consensus       175 ~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~  250 (346)
                      ..|.+++|+| ++. ++++++.|+.|++||++....                   ....+..+ .|...|.+++|+   +
T Consensus       205 ~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~-------------------~~~~~~~~-~~~~~v~~~~~s~~~~  263 (383)
T 3ei3_B          205 AKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKD-------------------KNSYIAEM-PHEKPVNAAYFNPTDS  263 (383)
T ss_dssp             SCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCS-------------------TTCEEEEE-ECSSCEEEEEECTTTS
T ss_pred             CcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCc-------------------ccceEEEe-cCCCceEEEEEcCCCC
Confidence            9999999999 666 999999999999999997321                   01122233 699999999997   5


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCCCCCc-c-------ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQSPGEG-T-------ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-~-------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      ++|++++.|+.|++||+++.+...... +       ...+...-.+.+.+..++|+|++  .+  +++.||.|++||+.+
T Consensus       264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg--~~--s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD--QL--LLNDKRTIDIYDANS  339 (383)
T ss_dssp             CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT--TT--CTTCCCCEEEEETTT
T ss_pred             CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc--cc--ccCCCCeEEEEecCC
Confidence            799999999999999999876321110 0       00000000122455667888888  34  888999999999999


Q ss_pred             CCcceeeee---eeeEEEEEecCCCCC
Q 019117          323 SPPVLIARL---ICFSLHVKYNPQSVY  346 (346)
Q Consensus       323 ~~~~~~~~~---~~~~~~~~~spdg~~  346 (346)
                      ++.+..+..   .+.+..++|+|||++
T Consensus       340 ~~~~~~l~~~~~~~~~~~~~~s~~g~~  366 (383)
T 3ei3_B          340 GGLVHQLRDPNAAGIISLNKFSPTGDV  366 (383)
T ss_dssp             CCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred             CceeeeecCCCCCceEEEEEEecCccE
Confidence            987666553   344667899999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.5e-39  Score=298.51  Aligned_cols=273  Identities=20%  Similarity=0.292  Sum_probs=238.0

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +++.+.+.+|.+.|.+++|+|    ++.+||+++.++ |++||+.++..+..+..     |...|.+++|+  |+++ +|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp----~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~s--~~~~-~l   70 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVEIWNYETQVEVRSIQV-----TETPVRAGKFI--ARKN-WI   70 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEEE--GGGT-EE
T ss_pred             cccceeeecCCCceEEEEECC----CCCEEEEEeCCCEEEEEECCCCceEEEEec-----CCCcEEEEEEe--CCCC-EE
Confidence            456678899999999999999    789999999888 99999998887777764     77889888887  8898 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~  180 (346)
                      ++++.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||++++ .....+.   +|...|.++
T Consensus        71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~v~~~  146 (814)
T 3mkq_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCV  146 (814)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEE---CCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEc---CCCCcEEEE
Confidence            9999999999999999999999999999999999999 8899999999999999999887 6666776   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec----CCEEEE
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL----GDFILS  255 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~----~~~l~~  255 (346)
                      +|+|.++..+++++.||.|++||+...                       .....+.. +...+.++.|+    +.++++
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQS-----------------------TPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCS-----------------------SCSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------cceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence            999866789999999999999999872                       22333443 34788899885    679999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-ee
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CF  334 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~  334 (346)
                      ++.|+.|++||+.+++         .+..+..|...|.+++|+|++  .+|++++.||.|++||+.+++........ ..
T Consensus       204 ~~~dg~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~  272 (814)
T 3mkq_A          204 ASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTLNVGLER  272 (814)
T ss_dssp             ECTTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred             EeCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEeecCCCc
Confidence            9999999999998776         677788899999999999999  79999999999999999998766655433 46


Q ss_pred             EEEEEecCCCC
Q 019117          335 SLHVKYNPQSV  345 (346)
Q Consensus       335 ~~~~~~spdg~  345 (346)
                      +.+++|+|+|+
T Consensus       273 v~~~~~~~~~~  283 (814)
T 3mkq_A          273 SWCIATHPTGR  283 (814)
T ss_dssp             EEEEEECTTCG
T ss_pred             EEEEEEccCCC
Confidence            88999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=266.25  Aligned_cols=274  Identities=14%  Similarity=0.166  Sum_probs=232.1

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      ........+.+|.++|++++|+|    ++++|++++.++ |++||+.+++.+..+..     |...|.+++|+  |+++ 
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-   87 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNK----EGDLLFSCSKDSSASVWYSLNGERLGTLDG-----HTGTIWSIDVD--CFTK-   87 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECT----TSCEEEEEESSSCEEEEETTTCCEEEEECC-----CSSCEEEEEEC--TTSS-
T ss_pred             ccccccEEEEEeeceEEEEEEcC----CCCEEEEEeCCCEEEEEeCCCchhhhhhhh-----cCCcEEEEEEc--CCCC-
Confidence            34445566899999999999999    789999999888 99999998888777654     77788888876  8888 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCee-----------
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGIC-----------  163 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~-----------  163 (346)
                      +|++++.||.|++||+.+++.+..+. +...|.+++|+| ++.++++++.+     +.|++||+.....           
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B           88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence            99999999999999999999988888 889999999999 88999999998     9999999976532           


Q ss_pred             EEEecccCCCCc--ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          164 ILIFAGAGGHRN--EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       164 ~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      +..+.   .|..  .+.+++|+| ++.++++++.||.|++||++..                      ...+..+..|..
T Consensus       166 ~~~~~---~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~----------------------~~~~~~~~~~~~  219 (369)
T 3zwl_B          166 IHKII---THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNN----------------------YEYVDSIDLHEK  219 (369)
T ss_dssp             SEEEE---CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTT----------------------TEEEEEEECCSS
T ss_pred             eeecc---CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCC----------------------cEeEEEEecCCC
Confidence            22333   3555  899999999 8999999999999999999872                      234567778999


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC------
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG------  313 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg------  313 (346)
                      .|.++.|+  +++|++++.|+.|++||+++.+         .+..+. +...+..++|+|++  .++++++.++      
T Consensus       220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ---------VLKKYE-TDCPLNTAVITPLK--EFIILGGGQEAKDVTT  287 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------EEEEEE-CSSCEEEEEECSSS--SEEEEEECCC------
T ss_pred             ceeEEEECCCCCEEEEecCCceEEEEECCCCc---------eeeeec-CCCCceeEEecCCC--ceEEEeecCCCceEEE
Confidence            99999998  8899999999999999999876         444444 56789999999999  6888888888      


Q ss_pred             --------cEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117          314 --------KIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       314 --------~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                              .+++||+.+++++.... +...+.+++|+|||++
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  329 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS  329 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence                    89999999988766544 4566899999999874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8e-39  Score=284.17  Aligned_cols=270  Identities=22%  Similarity=0.339  Sum_probs=220.7

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ..+.|+||.++|++|+|+|    +|++||+++.|+ |+||| .+++.+..+..     |...|.+++|+  |+++ +|++
T Consensus         8 e~~~L~GH~~~V~~~a~sp----dg~~las~~~d~~v~iWd-~~~~~~~~l~g-----h~~~V~~l~fs--pdg~-~las   74 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSP----DGQTIASASDDKTVKLWN-RNGQLLQTLTG-----HSSSVWGVAFS--PDGQ-TIAS   74 (577)
T ss_dssp             EEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEC-TTSCEEEEEEC-----CSSCEEEEEEC--TTSS-EEEE
T ss_pred             EeeEECCCCCcEEEEEECC----CCCEEEEEeCCCEEEEEE-CCCCEEEEEeC-----CCCCEEEEEEC--CCCC-EEEE
Confidence            3456899999999999999    889999999998 99999 56777766654     77889888776  9999 9999


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec---------------
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA---------------  168 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------  168 (346)
                      ++.|+.|+|||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.+++|+...........               
T Consensus        75 ~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (577)
T 2ymu_A           75 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ  152 (577)
T ss_dssp             EETTSCEEEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECC-CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCc
Confidence            999999999995 6788899999999999999999 89999999999999999976432211110               


Q ss_pred             ----------------------ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117          169 ----------------------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  226 (346)
Q Consensus       169 ----------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
                                            ....|...|.++.++| ++.++++++.|+.|++||...                    
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~~~--------------------  211 (577)
T 2ymu_A          153 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG--------------------  211 (577)
T ss_dssp             CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTS--------------------
T ss_pred             cceecccccceeccccceeeeeeccCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeCCC--------------------
Confidence                                  0014667778888888 778888888888888888543                    


Q ss_pred             ccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117          227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  304 (346)
                          ..+..+..|...|.+++|+  +++|++++.|+.|++||... +         .+..+.+|...|.+++|+|++  .
T Consensus       212 ----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~---------~~~~~~~~~~~v~~v~~~~d~--~  275 (577)
T 2ymu_A          212 ----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---------LLQTLTGHSSSVNGVAFRPDG--Q  275 (577)
T ss_dssp             ----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-C---------EEEEECCCSSCEEEEEECTTS--S
T ss_pred             ----cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-C---------EEEEEecCCCCEEEEEEcCCC--C
Confidence                3456778899999999998  78999999999999999653 2         567788899999999999999  7


Q ss_pred             eEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          305 AAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +|++++.|+.|++||...........+...+.+++|+||+++
T Consensus       276 ~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT  317 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCE
Confidence            899999999999999754322223334556899999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=266.69  Aligned_cols=279  Identities=10%  Similarity=0.185  Sum_probs=217.7

Q ss_pred             eeecccCCCceEEEEEEeecCCCc-cEEEEEcC---Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC---C
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYF-NVFATVGG---NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD---G   97 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~-~~la~~~~---~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~   97 (346)
                      ...+++|.+.|++++|+|    ++ .++++++.   |+ |++|++.+++.......    .|...|.+++|.  |+   +
T Consensus        11 ~~~~~~h~~~v~~~~~~p----~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~--~~~~~~   80 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVP----CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFG--ATSLQQ   80 (357)
T ss_dssp             EEEEEECSSCEEEEEECT----TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECT--TCCTTT
T ss_pred             hhhccCCCCceEEEEEcC----CCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEc--CCCCCC
Confidence            345578999999999999    55 46666765   66 99999988776544332    267788888776  76   5


Q ss_pred             CcEEEEeecCCeEEEEEccCcc-eeeeeccCCCceEEEEE------eCCCCceEEEeeCCCCEEEEecCCCe-eEEEecc
Q 019117           98 IPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRT------QPLKPSLVVSASKDESVRLWNVQTGI-CILIFAG  169 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~  169 (346)
                      . +|++|+.||.|++||+.+++ .+..+.+|...|.++.|      +| ++.+|++++.|+.|++||+++++ .+..+..
T Consensus        81 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           81 R-YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             C-CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             c-eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence            6 99999999999999999988 88899999999999965      56 78899999999999999999886 6777763


Q ss_pred             cCCC-CcceEEEE----ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          170 AGGH-RNEVLSVD----FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       170 ~~~~-~~~v~~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ..++ ...+.+++    |+| ++.++++++.|+.|++||++..+                        ......|...|.
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------------------------~~~~~~~~~~v~  213 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMA------------------------LRWETNIKNGVC  213 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTE------------------------EEEEEECSSCEE
T ss_pred             cCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCc------------------------eeeecCCCCceE
Confidence            2222 34889998    677 88999999999999999998832                        234466888999


Q ss_pred             EEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          245 CNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       245 ~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      ++.|+     ++++++++.|+.|++||+++.+.....    ....+..|...|.+++|+|+++ .+|++++.||.|++||
T Consensus       214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF----ASVSEKAHKSTVWQVRHLPQNR-ELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE----EEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce----eeeccCCCcCCEEEEEECCCCC-cEEEEEeCCCcEEEee
Confidence            99997     479999999999999999886521100    0112337889999999999983 2899999999999999


Q ss_pred             cCCCCcc-----------------eeee---eeeeEEEEEecCCCCC
Q 019117          320 LQSSPPV-----------------LIAR---LICFSLHVKYNPQSVY  346 (346)
Q Consensus       320 ~~~~~~~-----------------~~~~---~~~~~~~~~~spdg~~  346 (346)
                      +.++...                 ....   +...+.+++|+|+|++
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence            9875432                 1222   3345899999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-39  Score=273.14  Aligned_cols=273  Identities=20%  Similarity=0.257  Sum_probs=219.7

Q ss_pred             ccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEe----ccCc------eeeeEeeeecC-----CCccceEEEEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQC----LEGG------VIAALQSYVDE-----DKEESFYTVSWA   92 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~----~~~~------~~~~~~~~~~~-----~~~~~v~~~~~~   92 (346)
                      ..|.++|++++|+|    ++. +||+++.|+ |++|++    .+++      ....+......     .|...|.+++|+
T Consensus        42 ~~~~~~v~~~~~s~----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           42 IVKLDNIVSSTWNP----LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             EEECSCCSEEEECS----SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             eeccCceEEEEECC----CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence            45679999999999    678 999999988 999999    7777      33333321111     146688888887


Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc--
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA--  170 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  170 (346)
                        |+++ +|++++.||.|++|| .+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+...  
T Consensus       118 --~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          118 --HDGN-SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             --TTSS-EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             --CCCC-EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence              8898 999999999999999 67888889999999999999999 8899999999999999999888766554311  


Q ss_pred             ---------------------------------------------------CCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117          171 ---------------------------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTV  199 (346)
Q Consensus       171 ---------------------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  199 (346)
                                                                         ..|...|.+++|+| ++.+|++++.|+.|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTL  271 (425)
T ss_dssp             -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCE
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence                                                               14667778888887 77788888888888


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      ++||++.                       ...+..+..|...|.++.|+ ..++++++.|+.|++||+++++       
T Consensus       272 ~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------  321 (425)
T 1r5m_A          272 RIWHGGN-----------------------GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT-------  321 (425)
T ss_dssp             EEECSSS-----------------------BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE-------
T ss_pred             EEEECCC-----------------------CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc-------
Confidence            8888776                       33456677899999999998 3399999999999999998876       


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC--------------------cceeeeee--e-eE
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--------------------PVLIARLI--C-FS  335 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~--~-~~  335 (346)
                        .+..+..|...|.+++|+|++  .+|++++.||.|++||+.+++                    ++..+...  + .+
T Consensus       322 --~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (425)
T 1r5m_A          322 --LLALSIVDGVPIFAGRISQDG--QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI  397 (425)
T ss_dssp             --EEEEEECTTCCEEEEEECTTS--SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred             --EeEecccCCccEEEEEEcCCC--CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence              677777888999999999999  799999999999999999876                    44444433  3 78


Q ss_pred             EEEEecCCCCC
Q 019117          336 LHVKYNPQSVY  346 (346)
Q Consensus       336 ~~~~~spdg~~  346 (346)
                      .+++|+|+|++
T Consensus       398 ~~~~~s~~~~~  408 (425)
T 1r5m_A          398 FDLSWNCAGNK  408 (425)
T ss_dssp             EEEEECTTSSE
T ss_pred             EEEEccCCCce
Confidence            99999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=277.75  Aligned_cols=250  Identities=14%  Similarity=0.229  Sum_probs=193.7

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-----------eeeEeeeecCCCc------------cce
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-----------IAALQSYVDEDKE------------ESF   86 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-----------~~~~~~~~~~~~~------------~~v   86 (346)
                      .|.+.|++++|+|    ++++||+|+.|+ |+||++.++..           ...+..     |.            ..|
T Consensus        26 ~~~~~V~~v~~s~----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           26 AEADIISTVEFNH----SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-----HEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             CGGGSEEEEEECS----SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-----CCCEEEGGGTEEECCCC
T ss_pred             cccCcEEEEEECC----CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-----ccccccccccccccCce
Confidence            3678999999999    789999999998 99999987662           333433     54            778


Q ss_pred             EEEEEEEcCCC--CcEEEEeecCCeEEEEEccCccee---------------------------------------ee-e
Q 019117           87 YTVSWACNVDG--IPFLVAGGINGIIRVIDVSNEKLH---------------------------------------KS-F  124 (346)
Q Consensus        87 ~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~  124 (346)
                      .+++|.  |++  . +|++++.|+.|++||+.+++..                                       .. .
T Consensus        97 ~~l~~~--~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           97 NKIRWL--PQKNAA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CEEEEC--CCCSSS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEc--CCCCcc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            888887  776  5 8999999999999999764432                                       12 3


Q ss_pred             ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEEec----ccCCCCcceEEEEecCCCC-cEEEEEecCCe
Q 019117          125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFA----GAGGHRNEVLSVDFHPSDI-YRIASCGMDNT  198 (346)
Q Consensus       125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~  198 (346)
                      .+|...|.+++|+| ++.+|++| .|+.|++||+++ ++.+..+.    ...+|...|++++|+| ++ .+|++++.||.
T Consensus       174 ~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          174 NAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT  250 (447)
T ss_dssp             SCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC
T ss_pred             cCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe
Confidence            67999999999999 88999998 799999999984 44444220    1126899999999999 65 99999999999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc------------ceEEEEec--CCEEEEEeecCeEEE
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN------------YVDCNRWL--GDFILSKSVDNEIVL  264 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~--~~~l~~~~~d~~i~i  264 (346)
                      |++||++.....                   ......+..|..            .|.+++|+  +++|++++. +.|++
T Consensus       251 i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i  310 (447)
T 3dw8_B          251 IRLCDMRASALC-------------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV  310 (447)
T ss_dssp             EEEEETTTCSSS-------------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred             EEEEECcCCccc-------------------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence            999999983310                   011344555554            89999998  789999988 99999


Q ss_pred             EcCCC-CCCCCCCccccccccccCCCcC---------------eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          265 WEPKM-KEQSPGEGTADILQKYPVPECD---------------IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       265 wd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      ||++. ++         .+..+..|...               +..++|+|++  .+|++|+.||.|++||+.+++.+
T Consensus       311 wd~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          311 WDLNMENR---------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD--SVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EETTCCSS---------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS--SEEEEECSTTEEEEEETTTCCEE
T ss_pred             EeCCCCcc---------ccceeeccccccccccccccccccccceEEEECCCC--CEEEEeccCCEEEEEEcCCCcce
Confidence            99987 44         44555555421               3348999999  78999999999999999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-40  Score=278.95  Aligned_cols=252  Identities=19%  Similarity=0.305  Sum_probs=210.6

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC----ceeeeEeeeecCCCccceEEEEEEEcCC-CCcEEEEe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----GVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAG  104 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~  104 (346)
                      .|...|++++|+|    ++.+|++++.++ |++|++...    .....+.     .|...|.+++|+  |+ +. +|+++
T Consensus        65 ~~~~~v~~~~~s~----~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~~-~l~s~  132 (416)
T 2pm9_A           65 QVDSKFNDLDWSH----NNKIIAGALDNGSLELYSTNEANNAINSMARFS-----NHSSSVKTVKFN--AKQDN-VLASG  132 (416)
T ss_dssp             CCSSCEEEEEECS----SSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-----CSSSCCCEEEEC--SSSTT-BEEEE
T ss_pred             ecCCceEEEEECC----CCCeEEEEccCCeEEEeecccccccccchhhcc-----CCccceEEEEEc--CCCCC-EEEEE
Confidence            5889999999999    788999999887 999998872    2333333     377888888886  87 55 99999


Q ss_pred             ecCCeEEEEEccCcc------eee---eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC---C
Q 019117          105 GINGIIRVIDVSNEK------LHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---G  172 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~  172 (346)
                      +.||.|++||+.+++      ...   .+..|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+....   +
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  212 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG  212 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred             cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence            999999999998876      333   3367999999999999448899999999999999999999988887311   1


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccceEEEEe
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRW  248 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~  248 (346)
                      |...|.+++|+|++..++++++.|+   .|++||++...                      .+...+. .|...|.+++|
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----------------------~~~~~~~~~~~~~v~~~~~  270 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----------------------TPLQTLNQGHQKGILSLDW  270 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----------------------SCSBCCCSCCSSCEEEEEE
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----------------------CCcEEeecCccCceeEEEe
Confidence            2789999999994457999999998   99999998731                      2334455 78999999999


Q ss_pred             c---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          249 L---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       249 ~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      +   +++|++++.|+.|++||+++++         .+..+..|...|.+++|+|++. .+|++++.||.|++||+.+...
T Consensus       271 s~~~~~~l~s~~~dg~v~~wd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          271 CHQDEHLLLSSGRDNTVLLWNPESAE---------QLSQFPARGNWCFKTKFAPEAP-DLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CSSCSSCEEEEESSSEEEEECSSSCC---------EEEEEECSSSCCCCEEECTTCT-TEEEECCSSSEEEEEESCCCCC
T ss_pred             CCCCCCeEEEEeCCCCEEEeeCCCCc---------cceeecCCCCceEEEEECCCCC-CEEEEEecCCcEEEEEccCCCC
Confidence            6   6799999999999999999876         6778888999999999999984 5899999999999999988764


Q ss_pred             c
Q 019117          326 V  326 (346)
Q Consensus       326 ~  326 (346)
                      .
T Consensus       341 ~  341 (416)
T 2pm9_A          341 T  341 (416)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.2e-38  Score=270.79  Aligned_cols=267  Identities=18%  Similarity=0.284  Sum_probs=227.8

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..+....+.+|.+.|++++|+|    ++ +|++++.|+ |++||+.+++....+..     |...|.++++.+.+++. +
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~----~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~-~  219 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAH----GG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-----HNSTVRCLDIVEYKNIK-Y  219 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECS----TT-EEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEEESSSCE-E
T ss_pred             CCcEEEEEeCCCcCEEEEEEcC----CC-EEEEEeCCCCEEEEECCCCcEEEEECC-----CCCccEEEEEecCCCCC-E
Confidence            3456778889999999999998    44 899999888 99999998887766653     78899999999878888 9


Q ss_pred             EEEeecCCeEEEEEccCcce-----------------------eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117          101 LVAGGINGIIRVIDVSNEKL-----------------------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN  157 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  157 (346)
                      |++|+.||.|++||+.+++.                       +..+.+|...|.++.  + ++.++++++.|+.|++||
T Consensus       220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd  296 (464)
T 3v7d_B          220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWD  296 (464)
T ss_dssp             EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEE
Confidence            99999999999999987652                       456778888888874  4 678999999999999999


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      +++++.+..+.   +|...|.+++|+| ++.++++++.||.|++||+++                       ...+..+.
T Consensus       297 ~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-----------------------~~~~~~~~  349 (464)
T 3v7d_B          297 VAQMKCLYILS---GHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN-----------------------GELMYTLQ  349 (464)
T ss_dssp             TTTTEEEEEEC---CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT-----------------------TEEEEEEC
T ss_pred             CCCCcEEEEec---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----------------------CcEEEEEe
Confidence            99999999998   7999999999999 899999999999999999988                       44677888


Q ss_pred             ecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       238 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      .|...|.++.|+++++++++.||.|++||+.+.+         ..... .+...+..++|++++  .+|++++ ||.|++
T Consensus       350 ~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~---------~~~~~-~~~~~~~~~~~~~~~--~~l~~~~-dg~i~i  416 (464)
T 3v7d_B          350 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS---------RKFSY-HHTNLSAITTFYVSD--NILVSGS-ENQFNI  416 (464)
T ss_dssp             CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---------EEEEE-ECTTCCCEEEEEECS--SEEEEEE-TTEEEE
T ss_pred             CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc---------eeeee-cCCCCccEEEEEeCC--CEEEEec-CCeEEE
Confidence            9999999999999999999999999999998765         22222 245577889999999  6888888 899999


Q ss_pred             EEcCCCCccee--eeeeeeEEEEEecC
Q 019117          318 WELQSSPPVLI--ARLICFSLHVKYNP  342 (346)
Q Consensus       318 wd~~~~~~~~~--~~~~~~~~~~~~sp  342 (346)
                      ||+.+++.+..  ......+.+++|++
T Consensus       417 wd~~~g~~~~~~~~~~~~~v~~v~~~~  443 (464)
T 3v7d_B          417 YNLRSGKLVHANILKDADQIWSVNFKG  443 (464)
T ss_dssp             EETTTCCEEESCTTTTCSEEEEEEEET
T ss_pred             EECCCCcEEehhhccCCCcEEEEEecC
Confidence            99999987653  34456688898874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=266.67  Aligned_cols=260  Identities=20%  Similarity=0.302  Sum_probs=212.2

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc--CceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +...+.+|.++|++++|+|    ++.+||+++.|+ |++|++..  ......+.     .|...|.+++|+...++. +|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~-~l   72 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-IL   72 (379)
T ss_dssp             --CCEEECCCCEEEEEECS----SSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCS-EE
T ss_pred             ccEEecCCcccEEEEEEcC----CCCEEEEEECCCcEEEEecCCCcceeeeEec-----CCCCcEEEEEeCCCCCCC-EE
Confidence            4567899999999999999    789999999888 99999873  33333333     378889999987433377 99


Q ss_pred             EEeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCee--EEEecccCCCCc
Q 019117          102 VAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRN  175 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~  175 (346)
                      ++++.||.|++||+.+++  .+..+..|...|.+++|+| +  +.+|++++.|+.|++||++.+..  ...+.   .|..
T Consensus        73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~  148 (379)
T 3jrp_A           73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAI  148 (379)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE---CCTT
T ss_pred             EEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEec---CCCC
Confidence            999999999999999987  7778888999999999999 6  88999999999999999988733  33444   6899


Q ss_pred             ceEEEEecCC------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          176 EVLSVDFHPS------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       176 ~v~~~~~~~~------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      .|.+++|+|.            ++.++++++.|+.|++||++....                   .......+..|...|
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWV  209 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-------------------ceeeEEEEecccCcE
Confidence            9999999984            488999999999999999987321                   122445677899999


Q ss_pred             EEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          244 DCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       244 ~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      .+++|+     +++|++++.||.|++||+++.....    ...+.....+...|.+++|+|++  .+|++++.||.|++|
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLW  283 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSS--CCEEEEESSSSEEEE
T ss_pred             eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCC--CEEEEecCCCcEEEE
Confidence            999998     3689999999999999998864210    11233334477899999999999  789999999999999


Q ss_pred             EcCCC
Q 019117          319 ELQSS  323 (346)
Q Consensus       319 d~~~~  323 (346)
                      ++..+
T Consensus       284 ~~~~~  288 (379)
T 3jrp_A          284 KENLE  288 (379)
T ss_dssp             EEEET
T ss_pred             eCCCC
Confidence            99854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5e-38  Score=268.35  Aligned_cols=268  Identities=12%  Similarity=0.103  Sum_probs=214.4

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      +..| ..+....|+|    ++++||+++.++ |++||+.++.....+.     .|...|.+++|+  |+++ +|++++.|
T Consensus        94 ~~~~-~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~-~l~s~s~d  160 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKL----QMRRFILGTTEGDIKVLDSNFNLQREIDQ-----AHVSEITKLKFF--PSGE-ALISSSQD  160 (420)
T ss_dssp             SCSC-CEEEEEEECS----SSCEEEEEETTSCEEEECTTSCEEEEETT-----SSSSCEEEEEEC--TTSS-EEEEEETT
T ss_pred             EecC-CceEEEEEec----CCCEEEEEECCCCEEEEeCCCcceeeecc-----cccCccEEEEEC--CCCC-EEEEEeCC
Confidence            3444 3344456777    789999999988 9999988776655433     378889888887  8898 99999999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE------
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD------  181 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------  181 (346)
                      +.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+.....+...+.+++      
T Consensus       161 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  239 (420)
T 3vl1_A          161 MQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD  239 (420)
T ss_dssp             SEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred             CeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCc
Confidence            9999999999999999999999999999999 889999999999999999999999988874333445555554      


Q ss_pred             ---------------ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE-EeecccceEE
Q 019117          182 ---------------FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDC  245 (346)
Q Consensus       182 ---------------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~  245 (346)
                                     |+| ++.+|++++.||.|++||++...                       .... ...|...|.+
T Consensus       240 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~-----------------------~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          240 RQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKE-----------------------QTIQLPSKFTCSCNS  295 (420)
T ss_dssp             SSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCC-----------------------EEEEECCTTSSCEEE
T ss_pred             ceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCc-----------------------eeEEcccccCCCcee
Confidence                           567 88899999999999999998832                       2222 3357889999


Q ss_pred             EEec--CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          246 NRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       246 ~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++|+  +. +|++++.||.|++||+++++.        ++..+.. |...|.++. .+++  .+|++++.||.|++|++.
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~v~~~~-~~~~--~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPEC--------PVGEFLINEGTPINNVY-FAAG--ALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEEESTTSCEEEEE-EETT--EEEEEETTTEEEEEEEEC
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------chhhhhccCCCCceEEE-eCCC--CEEEEecCCccEEEEecc
Confidence            9998  55 999999999999999998752        3555555 566777774 4566  699999999999999998


Q ss_pred             CCC----------cceeeeeeeeEEEEEecCCCC
Q 019117          322 SSP----------PVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       322 ~~~----------~~~~~~~~~~~~~~~~spdg~  345 (346)
                      +.+          +.......+.+.+++|+|||+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             CCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            742          122233345578899999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-38  Score=264.44  Aligned_cols=260  Identities=16%  Similarity=0.154  Sum_probs=210.9

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      +..|.++|++++|+|    ++++||+++.++ |++||+.+++  ....+..     |...|.+++|.  |+++ +|++++
T Consensus         4 ~~~~~~~i~~~~~s~----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~l~~~~   71 (372)
T 1k8k_C            4 HSFLVEPISCHAWNK----DRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWA--PDSN-RIVTCG   71 (372)
T ss_dssp             EESCSSCCCEEEECT----TSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-----CSSCEEEEEEE--TTTT-EEEEEE
T ss_pred             ecccCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-----CCCcccEEEEe--CCCC-EEEEEc
Confidence            355999999999999    789999998888 9999998876  5555543     77889888887  8888 999999


Q ss_pred             cCCeEEEEEccCcceeee--eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCCCcceEEE
Q 019117          106 INGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~  180 (346)
                      .||.|++||+.+++....  +..|...|.+++|+| ++.+|++++.|+.|++||++.++.   ...+.  ..|...|.++
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~  148 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIK--KPIRSTVLSL  148 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEEC--TTCCSCEEEE
T ss_pred             CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeee--cccCCCeeEE
Confidence            999999999988875443  467899999999999 889999999999999999988763   23332  2688999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC-CCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF-PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +|+| ++.++++++.|+.|++||++.........      .... ........+..+..|...|.++.|+  +++|++++
T Consensus       149 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          149 DWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPA------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEECCCTTTSCCCC------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEcC-CCCEEEEEcCCCCEEEEEccccccccccc------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence            9999 88999999999999999986422110000      0000 0011134566677899999999998  77999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .|+.|++||+++++         .+..+..|...|.+++|+|++  .+|+++ .|+.|++|++.+
T Consensus       222 ~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          222 HDSTVCLADADKKM---------AVATLASETLPLLAVTFITES--SLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TTTEEEEEEGGGTT---------EEEEEECSSCCEEEEEEEETT--EEEEEE-TTSSCEEEEEET
T ss_pred             CCCEEEEEECCCCc---------eeEEEccCCCCeEEEEEecCC--CEEEEE-eCCeEEEEEccC
Confidence            99999999999876         677788888899999999999  677777 899999999988

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.5e-38  Score=259.69  Aligned_cols=275  Identities=15%  Similarity=0.171  Sum_probs=215.6

Q ss_pred             cceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccce
Q 019117            8 CEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESF   86 (346)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v   86 (346)
                      ....+|.+.........+...+++|...|.+++|+|    ++++|++++.|+ |++|+............     +...+
T Consensus        61 ~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~----dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~  131 (340)
T 4aow_A           61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS----DGQFALSGSWDGTLRLWDLTTGTTTRRFVG-----HTKDV  131 (340)
T ss_dssp             SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCE
T ss_pred             CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC----CCCEEEEEcccccceEEeecccceeeeecC-----CCCce
Confidence            345666666544455566778899999999999999    789999999999 99999877766555443     44445


Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-eeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeE
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      ....+  ++++. +|++++.|+.+++||+..... .....+|...+..++|++.. ..++++++.|+.|++||+++++.+
T Consensus       132 ~~~~~--~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  208 (340)
T 4aow_A          132 LSVAF--SSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK  208 (340)
T ss_dssp             EEEEE--CTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             eEEEE--eecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence            54544  48887 999999999999999876543 44567799999999999843 346789999999999999999999


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ..+.   +|...|++++|+| ++.+|++++.|+.|++||++..                       ..+..+. +...|.
T Consensus       209 ~~~~---~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-----------------------~~~~~~~-~~~~v~  260 (340)
T 4aow_A          209 TNHI---GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-----------------------KHLYTLD-GGDIIN  260 (340)
T ss_dssp             EEEC---CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-----------------------EEEEEEE-CSSCEE
T ss_pred             eEec---CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-----------------------ceeeeec-CCceEE
Confidence            9988   7999999999999 8999999999999999999983                       3344444 456799


Q ss_pred             EEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          245 CNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       245 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ++.|+ +..+++++.|+.|++||+++..................|...|++++|+|++  ++|++|+.||.|+|||+++|
T Consensus       261 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG--QTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS--SEEEEEETTSCEEEEEEEC-
T ss_pred             eeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEeCCCc
Confidence            99998 6678888899999999998765221111111233445688899999999999  79999999999999999998


Q ss_pred             C
Q 019117          324 P  324 (346)
Q Consensus       324 ~  324 (346)
                      +
T Consensus       339 t  339 (340)
T 4aow_A          339 T  339 (340)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.1e-38  Score=262.66  Aligned_cols=270  Identities=13%  Similarity=0.199  Sum_probs=215.6

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ..+.+|.+.|++++|+|    ++.+||+++.|+ |++|++.++... .....+  ..|...|.+++|....++. +|+++
T Consensus         5 ~~~~gH~~~v~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~d~~-~l~s~   77 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDF----YGRHVATCSSDQHIKVFKLDKDTSNWELSDSW--RAHDSSIVAIDWASPEYGR-IIASA   77 (351)
T ss_dssp             CEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEEECSSSCCEEEEEEE--ECCSSCEEEEEECCGGGCS-EEEEE
T ss_pred             ccCcccccceeEEEEcC----CCCEEEEeeCCCeEEEEECCCCCCcceeccee--ccCCCcEEEEEEcCCCCCC-EEEEE
Confidence            34589999999999999    789999999998 999999876432 222222  2378889999887322577 99999


Q ss_pred             ecCCeEEEEEccCc---------ceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEEecc----
Q 019117          105 GINGIIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAG----  169 (346)
Q Consensus       105 ~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----  169 (346)
                      +.||.|++||+.++         +.+..+..|...|.+++|+| +  +.+|++++.||.|++||+++++.+..+..    
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  156 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM  156 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence            99999999999887         55778889999999999999 7  88999999999999999988765443321    


Q ss_pred             ------cCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          170 ------AGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       170 ------~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                            ...|...+.+++|+|.  ++.++++++.++.+.+|+.....                     ...+..+..|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~  215 (351)
T 3f3f_A          157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---------------------LHVAAKLPGHKS  215 (351)
T ss_dssp             ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC---------------------EEEEEECCCCCS
T ss_pred             cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc---------------------eeeeeecCCCCc
Confidence                  1247789999999993  38899999999999888776622                     123556778999


Q ss_pred             ceEEEEec--C----CEEEEEeecCeEEEEcCCCCCCCCC-------------------------------------Ccc
Q 019117          242 YVDCNRWL--G----DFILSKSVDNEIVLWEPKMKEQSPG-------------------------------------EGT  278 (346)
Q Consensus       242 ~i~~~~~~--~----~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------------~~~  278 (346)
                      .|.+++|+  +    ++|++++.||.|++||++.......                                     ...
T Consensus       216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (351)
T 3f3f_A          216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ  295 (351)
T ss_dssp             CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred             ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence            99999999  4    6899999999999999987532110                                     011


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      ...+..+.+|...|++++|+|++  .+|++++.||.|++||+.+++...
T Consensus       296 ~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          296 VELLSEHDDHNGEVWSVSWNLTG--TILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             EEEEEEECTTSSCEEEEEECSSS--CCEEEEETTSCEEEEEECTTSCEE
T ss_pred             ccEEEEEecccccEEEEEEcCCC--CEEEEecCCCcEEEEecCcCcchh
Confidence            23566778899999999999999  799999999999999999876544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.3e-39  Score=275.29  Aligned_cols=290  Identities=14%  Similarity=0.136  Sum_probs=208.5

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCc
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIP   99 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~   99 (346)
                      .+++.....+|...|+||+|+|.   ++.+||+|+.|+ |+|||+.+++....+..   ..|...|.+++|+  | ++. 
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~--p~~~~-  178 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFN--PLNTN-  178 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSS---CTTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEEC--SSCTT-
T ss_pred             ceeecccCCCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEe--CCCCC-
Confidence            44555666789999999999993   357999999998 99999887765444332   3488899998887  6 455 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      +|++|+.||+|++||++++.......  .+...+.+++|+| ++.+|++|+.||.|++||++ ++.+..+.   +|...|
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~---~h~~~v  253 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLR---MHKKKV  253 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSB---CCSSCE
T ss_pred             EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEe---cccceE
Confidence            99999999999999998765433333  2345678999999 89999999999999999986 45566666   799999


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      ++++|+|.+..++++++.|+.|++||++....                    .........|...|++++|+  +++|++
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--------------------~~~~~~~~~h~~~v~~~~~spdg~~l~s  313 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRG--------------------KASFLYSLPHRHPVNAACFSPDGARLLT  313 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCS--------------------SSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccc--------------------cceEEEeeeccccccceeECCCCCeeEE
Confidence            99999995567899999999999999987331                    11222345689999999998  789999


Q ss_pred             EeecCeEEEEcCCCCCCCCCC-cc-------ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          256 KSVDNEIVLWEPKMKEQSPGE-GT-------ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~-~~-------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      ++.|++|++||+.+++..... .+       ...+.....+...+..+.+++++. .+++++..++.|++||..+++.+.
T Consensus       314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~i~iwd~~~g~~~~  392 (435)
T 4e54_B          314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN-FKSCTPYELRTIDVFDGNSGKMMC  392 (435)
T ss_dssp             EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTT-SCCSSTTCCCCEEEECSSSCCEEE
T ss_pred             EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCC-eEEEEecCCCEEEEEECCCCcEEE
Confidence            999999999999887531100 00       000000001122333344444442 122233345689999999998655


Q ss_pred             eee--eeeeEEEE-EecCCCCC
Q 019117          328 IAR--LICFSLHV-KYNPQSVY  346 (346)
Q Consensus       328 ~~~--~~~~~~~~-~~spdg~~  346 (346)
                      ...  ....+.++ +|+|||++
T Consensus       393 ~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          393 QLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             EECCSSCCCCCCEEEECTTSSC
T ss_pred             EEeCCCCCcEEEEEEECCCCCE
Confidence            432  23345665 79999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-37  Score=265.52  Aligned_cols=263  Identities=17%  Similarity=0.314  Sum_probs=228.5

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..+....+.+|.+.|.+++|++      .++++++.|+ |++||+.+++.+..+..     |...|.++++.    ++ .
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~----~~-~  211 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLYG-----HTSTVRCMHLH----EK-R  211 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEE----TT-E
T ss_pred             CCcEEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCcCcEEEEECC-----CCCcEEEEEec----CC-E
Confidence            3456778899999999999975      6999999988 99999999887776653     67788888774    44 8


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +++|+.||.|++||+.+++.+..+.+|...|.+++|   ++..+++|+.||.|++||+++++.+..+.   +|...|.++
T Consensus       212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~  285 (445)
T 2ovr_B          212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSL  285 (445)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEec---CCCCceEEE
Confidence            999999999999999999999999999999999999   45789999999999999999999999998   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecC
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN  260 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~  260 (346)
                      +|   ++.++++++.|+.|++||+++                       ...+..+..|...+.++.++++++++++.||
T Consensus       286 ~~---~~~~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg  339 (445)
T 2ovr_B          286 QF---DGIHVVSGSLDTSIRVWDVET-----------------------GNCIHTLTGHQSLTSGMELKDNILVSGNADS  339 (445)
T ss_dssp             EE---CSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCCSCEEEEEEETTEEEEEETTS
T ss_pred             EE---CCCEEEEEeCCCeEEEEECCC-----------------------CCEEEEEcCCcccEEEEEEeCCEEEEEeCCC
Confidence            99   467899999999999999988                       3456677889999999999999999999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee------ee
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA------RL  331 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~  331 (346)
                      .|++||+++++         .+..+..   |...|.+++|+  +  .+|++|+.||.|++||+.+++.+...      ..
T Consensus       340 ~i~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~--~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  406 (445)
T 2ovr_B          340 TVKIWDIKTGQ---------CLQTLQGPNKHQSAVTCLQFN--K--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  406 (445)
T ss_dssp             CEEEEETTTCC---------EEEEECSTTSCSSCEEEEEEC--S--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             eEEEEECCCCc---------EEEEEccCCCCCCCEEEEEEC--C--CEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence            99999998876         4555554   77889999995  4  58999999999999999999876655      34


Q ss_pred             eeeEEEEEecCCCC
Q 019117          332 ICFSLHVKYNPQSV  345 (346)
Q Consensus       332 ~~~~~~~~~spdg~  345 (346)
                      .+.+.+++|+|+|.
T Consensus       407 ~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          407 GGVVWRIRASNTKL  420 (445)
T ss_dssp             TCEEEEEEECSSEE
T ss_pred             CceEEEEEecCCEE
Confidence            45689999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-37  Score=264.48  Aligned_cols=280  Identities=15%  Similarity=0.110  Sum_probs=218.9

Q ss_pred             ceeeecccccc-ccceeeeeecccCCCceEEEEEEeecCCCc---cEEEEEcCCc-EEEEEeccCce-----eeeEeeee
Q 019117            9 EPLVGSLTPSK-KREYRVTNKLQEGKRPLYAVVFNFIDSRYF---NVFATVGGNR-VTVYQCLEGGV-----IAALQSYV   78 (346)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~---~~la~~~~~~-v~i~~~~~~~~-----~~~~~~~~   78 (346)
                      ...+|.+.... ...+.+...+.+|..+|++++|+|+...++   .+|++++.++ |++|++.++..     ...+..+.
T Consensus        37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  116 (397)
T 1sq9_A           37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD  116 (397)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC
T ss_pred             EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc
Confidence            34444443321 223456777889999999999999211117   8999999888 99999998876     55554321


Q ss_pred             cCCCccceEEEEEEEc--CCCCcE-EEEeecCCeEEEEEccC------cceee-----ee-------ccCCCceEEEEEe
Q 019117           79 DEDKEESFYTVSWACN--VDGIPF-LVAGGINGIIRVIDVSN------EKLHK-----SF-------VGHGDSINEIRTQ  137 (346)
Q Consensus        79 ~~~~~~~v~~~~~~~~--~~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~  137 (346)
                      .......|.+++|...  |+++ + |++++.||.|++||+.+      ++.+.     .+       ..|...|.+++|+
T Consensus       117 ~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  195 (397)
T 1sq9_A          117 SDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS  195 (397)
T ss_dssp             TTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred             cccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence            1000477888877633  6787 8 99999999999999998      76666     66       4488999999999


Q ss_pred             CCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC---CcceEEEEecCCCCcEEEEEecC---CeEEEEEccccceee
Q 019117          138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH---RNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYV  211 (346)
Q Consensus       138 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~  211 (346)
                      | ++ +|++++.|+.|++||+++++.+..+....+|   ...|.+++|+| ++.+|++++.|   +.|++||+++.    
T Consensus       196 ~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~----  268 (397)
T 1sq9_A          196 E-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFG----  268 (397)
T ss_dssp             T-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTC----
T ss_pred             C-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCC----
Confidence            9 77 9999999999999999999999998821118   99999999999 89999999999   99999999883    


Q ss_pred             eeceeecCCCCCCCCccceeceEEEee-------------cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          212 EKSFTWTDLPSKFPTKYVQFPVFIASV-------------HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                                         ..+..+..             |...|.++.|+  +++|++++.|+.|++||+.+++     
T Consensus       269 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----  324 (397)
T 1sq9_A          269 -------------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-----  324 (397)
T ss_dssp             -------------------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----
T ss_pred             -------------------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-----
Confidence                               34455555             89999999998  8899999999999999998876     


Q ss_pred             cccccccccc------CC---------------CcCeeEEEEeecCC--------cceEEEEcCCCcEEEEEcCCCC
Q 019117          277 GTADILQKYP------VP---------------ECDIWFIKFSCDFH--------YNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       277 ~~~~~~~~~~------~~---------------~~~v~~~~~s~~~~--------~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                          .+..+.      .|               ...|.+++|+|+++        ..+|++++.||.|++|++.+++
T Consensus       325 ----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          325 ----RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ----EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ----eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                455555      55               88999999999972        1389999999999999998863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-38  Score=269.00  Aligned_cols=270  Identities=11%  Similarity=0.083  Sum_probs=208.4

Q ss_pred             cceeeeeec-ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc---CceeeeEeeeecCCCccceEEEEEEEcC
Q 019117           21 REYRVTNKL-QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        21 ~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      ...+++..+ .+|.+.|++++|+|.   ++.+||+|+.|+ |++||+.+   +........+   .|...|.+++|.  |
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~--~  121 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPG---ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQITMI--P  121 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECS---SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEEEEEC--T
T ss_pred             ccceEEeeeccCCCCceEEEEECCC---CCCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEEEEEe--C
Confidence            445667777 899999999999982   468999999998 99999887   4422212221   277889888887  8


Q ss_pred             CCCcEEEEeecCCeEEEEEcc---Ccceeeeecc------------CCCceEEEE--EeCCCCceEEEeeCCCCEEEEec
Q 019117           96 DGIPFLVAGGINGIIRVIDVS---NEKLHKSFVG------------HGDSINEIR--TQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      +++ +|++++.||.|++||+.   +++....+..            +...+.++.  +++ ++.+|++++.|+.|++||+
T Consensus       122 ~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~  199 (437)
T 3gre_A          122 NFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDI  199 (437)
T ss_dssp             TSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEET
T ss_pred             CCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Confidence            888 99999999999999995   5554443332            445566666  446 7889999999999999999


Q ss_pred             CCCeeEEEecccCC--CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          159 QTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       159 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      ++++.+..+.   +  |...|++++|+| ++.+|++++.||.|++||++.                       ..++..+
T Consensus       200 ~~~~~~~~~~---~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-----------------------~~~~~~~  252 (437)
T 3gre_A          200 RTLERLQIIE---NSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF-----------------------NVLIRSW  252 (437)
T ss_dssp             TTCCEEEEEE---CCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT-----------------------TEEEEEE
T ss_pred             CCCeeeEEEc---cCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC-----------------------ccEEEEE
Confidence            9999999988   5  789999999999 899999999999999999998                       3344555


Q ss_pred             e-ecccceEEEEec------CCEEEEEeecCeEEEEcCCCCCCCCCCc-c------------ccc--cccccC--CCcCe
Q 019117          237 S-VHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEG-T------------ADI--LQKYPV--PECDI  292 (346)
Q Consensus       237 ~-~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~------------~~~--~~~~~~--~~~~v  292 (346)
                      . .|...|.++.|+      +.+|++++.|+.|++||+++++...... .            ...  ...+.+  |...|
T Consensus       253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  332 (437)
T 3gre_A          253 SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL  332 (437)
T ss_dssp             BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred             ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence            4 677789999665      3489999999999999998765211000 0            000  001223  67789


Q ss_pred             eEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          293 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      ++++|+ ++  .+|++|+.||.|++||+.+++....+.
T Consensus       333 ~~l~~~-~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          333 STISVS-ND--KILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             CCEEEE-TT--EEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             EEEEEC-Cc--eEEEecCCCCeEEEEECCCcccceEEe
Confidence            999999 66  699999999999999999987655443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=259.99  Aligned_cols=282  Identities=12%  Similarity=0.138  Sum_probs=219.0

Q ss_pred             ccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-Ccee-eeEeeeecCCCccceEEEEEEEc
Q 019117           18 SKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVI-AALQSYVDEDKEESFYTVSWACN   94 (346)
Q Consensus        18 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~   94 (346)
                      ....+++....+.+|.+.|++++|+|+. .++.+|++++.|+ |++||+.+ +... ..+..     |...|.+++|+  
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----h~~~v~~~~~~--   95 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-----HTGPVLDVCWS--   95 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-----CSSCEEEEEEC--
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCceeEEEecc-----ccCCEEEEEEC--
Confidence            3456677788889999999999999921 1168999999988 99999987 4443 33332     77889888887  


Q ss_pred             CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEE--eCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT--QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                      |+++ +|++++.||.|++||+.+++.+. +..|...|.+++|  +| ++.+|++++.||.|++||+++++.+..+.    
T Consensus        96 ~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----  168 (368)
T 3mmy_A           96 DDGS-KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQ----  168 (368)
T ss_dssp             TTSS-EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEE----
T ss_pred             cCCC-EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEe----
Confidence            8898 99999999999999999988766 5569999999999  78 78899999999999999999999998887    


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe--cC
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LG  250 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~  250 (346)
                      ....+.++.+.+   ..+++++.++.+.+|+++.......                     .....+...+.++.+  .+
T Consensus       169 ~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~  224 (368)
T 3mmy_A          169 LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---------------------RIESPLKHQHRCVAIFKDK  224 (368)
T ss_dssp             CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---------------------ECCCSCSSCEEEEEEEECT
T ss_pred             cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---------------------hccccccCCCceEEEcccC
Confidence            445677777764   3688888999999999987322111                     001112223333333  33


Q ss_pred             C----EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc------------CeeEEEEeecCCcceEEEEcCCCc
Q 019117          251 D----FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------------DIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       251 ~----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                      .    .+++++.|+.|++||++....      ...+..+..|..            .|.+++|+|++  .+|++++.||.
T Consensus       225 ~~~~~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~~~dg~  296 (368)
T 3mmy_A          225 QNKPTGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH--GTLATVGSDGR  296 (368)
T ss_dssp             TSCEEEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT--CCEEEEETTSC
T ss_pred             CCCCCeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCC--CEEEEEccCCe
Confidence            3    499999999999999987631      124455555554            79999999999  78999999999


Q ss_pred             EEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117          315 IFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       315 i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                      |++||+.+++.+..+. +...+.+++|+|||++
T Consensus       297 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  329 (368)
T 3mmy_A          297 FSFWDKDARTKLKTSEQLDQPISACCFNHNGNI  329 (368)
T ss_dssp             EEEEETTTTEEEEECCCCSSCEEEEEECTTSSC
T ss_pred             EEEEECCCCcEEEEecCCCCCceEEEECCCCCe
Confidence            9999999987665544 3556899999999975

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-38  Score=276.66  Aligned_cols=270  Identities=10%  Similarity=0.017  Sum_probs=202.8

Q ss_pred             CCCceEEEEEEeecCCC-----ccEEEE-------------------EcCCc-EEEEEeccCceeeeE-eeeecCCCccc
Q 019117           32 GKRPLYAVVFNFIDSRY-----FNVFAT-------------------VGGNR-VTVYQCLEGGVIAAL-QSYVDEDKEES   85 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~-----~~~la~-------------------~~~~~-v~i~~~~~~~~~~~~-~~~~~~~~~~~   85 (346)
                      +.+.|++|+|+|+.+..     +++||+                   ++.|+ |+||++.+++..... ..+  ..+...
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l--~~~~~~  209 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI--VHSFGE  209 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE--EECCCS
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE--EecCCc
Confidence            57889999999954211     156666                   44566 999999876643211 111  115677


Q ss_pred             eEEEEEEEc----CCCCcEEEEeecCCeEEEEEccCcce-----------eeeeccCCCceEEEEEeCCCCceEEEeeCC
Q 019117           86 FYTVSWACN----VDGIPFLVAGGINGIIRVIDVSNEKL-----------HKSFVGHGDSINEIRTQPLKPSLVVSASKD  150 (346)
Q Consensus        86 v~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  150 (346)
                      |..++|++.    +++. +||+++.||+|++||+.+++.           ...+.+|...|++++|++ + ..|++|+.|
T Consensus       210 V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~D  286 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKN  286 (524)
T ss_dssp             EEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETT
T ss_pred             EEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCC
Confidence            988988843    2356 999999999999999976642           236778999999999998 4 489999999


Q ss_pred             CCEEEEecCCCe-eEEEecccCCCCcceEEE--EecCCCC-cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117          151 ESVRLWNVQTGI-CILIFAGAGGHRNEVLSV--DFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  226 (346)
Q Consensus       151 ~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
                      |+|++||+++++ +...+.   +|...|+++  +|+| ++ .+|++++.|++|++||+++.                   
T Consensus       287 gtV~lWD~~~~~~~~~~~~---~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~-------------------  343 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQ---VHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI-------------------  343 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEE---CSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH-------------------
T ss_pred             CEEEEEECCCCCCceEEee---cccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC-------------------
Confidence            999999998764 444566   799999999  5676 66 89999999999999999983                   


Q ss_pred             ccceeceEEEeeccc--ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117          227 KYVQFPVFIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       227 ~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                          .....+..|..  .|.+++|+  ++.+++++.|++|++||++++.         .+..+.+|.+.|++++|+|++ 
T Consensus       344 ----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---------~~~~l~gH~~~V~sva~Sp~g-  409 (524)
T 2j04_B          344 ----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---------AVHPLVSRETTITAIGVSRLH-  409 (524)
T ss_dssp             ----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---------CCEEEEECSSCEEEEECCSSC-
T ss_pred             ----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---------cceeeecCCCceEEEEeCCCC-
Confidence                23334555553  47889998  6789999999999999999865         456677899999999999999 


Q ss_pred             cceEEEEcCCCcEEEEEcCCCCcceeee------eeeeEEEEEecCCCC
Q 019117          303 YNAAAIGNREGKIFVWELQSSPPVLIAR------LICFSLHVKYNPQSV  345 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~spdg~  345 (346)
                       .+|++|+.||.|++||+..+. .....      ....+.+++|+|+|+
T Consensus       410 -~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~  456 (524)
T 2j04_B          410 -PMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDD  456 (524)
T ss_dssp             -CBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSC
T ss_pred             -CeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCC
Confidence             689999999999999987652 22211      111356888898875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-39  Score=273.48  Aligned_cols=269  Identities=14%  Similarity=0.256  Sum_probs=220.7

Q ss_pred             CCceEEEEEEeecCCCcc-EEEEE----------cCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           33 KRPLYAVVFNFIDSRYFN-VFATV----------GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~-~la~~----------~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ...|.+++|+|    ++. +||++          +.|+ |++|++.++.....+..+   .+...|.+++|+  |+++ +
T Consensus        12 ~~~v~~~~~sp----~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s--~~~~-~   81 (416)
T 2pm9_A           12 FSRTATFAWSH----DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL---QVDSKFNDLDWS--HNNK-I   81 (416)
T ss_dssp             EEESCBCCBCS----SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC---CCSSCEEEEEEC--SSSS-C
T ss_pred             hhhcceEeeCC----CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE---ecCCceEEEEEC--CCCC-e
Confidence            35688999999    555 99999          7777 999999877643232222   267788888886  8898 9


Q ss_pred             EEEeecCCeEEEEEccC----cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe------eEEEeccc
Q 019117          101 LVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------CILIFAGA  170 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~  170 (346)
                      |++++.||.|++||+.+    .+.+..+.+|...|.+++|+|+++.+|++++.|+.|++||+++++      ....+...
T Consensus        82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence            99999999999999987    457888899999999999999448999999999999999999886      44343223


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec------ccceE
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH------SNYVD  244 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~  244 (346)
                      ..|...|.+++|+|+++.++++++.|+.|++||++..                       ..+..+..+      ...|.
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------------------~~~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----------------------KEVIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----------------------EEEEEECCCCCSSCCCCCEE
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----------------------CcceEEeccccccccCCceE
Confidence            3689999999999944899999999999999999883                       234444444      78899


Q ss_pred             EEEec--C-CEEEEEeecC---eEEEEcCCCCCCCCCCcccccccccc-CCCcCeeEEEEee-cCCcceEEEEcCCCcEE
Q 019117          245 CNRWL--G-DFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSC-DFHYNAAAIGNREGKIF  316 (346)
Q Consensus       245 ~~~~~--~-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~  316 (346)
                      +++|+  + .++++++.|+   .|++||+++.+.        .+..+. .|...|.+++|+| ++  .+|++++.||.|+
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~--~~l~s~~~dg~v~  288 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------PLQTLNQGHQKGILSLDWCHQDE--HLLLSSGRDNTVL  288 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------CSBCCCSCCSSCEEEEEECSSCS--SCEEEEESSSEEE
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------CcEEeecCccCceeEEEeCCCCC--CeEEEEeCCCCEE
Confidence            99998  3 5899999998   999999998642        556666 7889999999999 77  7999999999999


Q ss_pred             EEEcCCCCcceeee-eeeeEEEEEecCCC
Q 019117          317 VWELQSSPPVLIAR-LICFSLHVKYNPQS  344 (346)
Q Consensus       317 iwd~~~~~~~~~~~-~~~~~~~~~~spdg  344 (346)
                      +||+.+++++..+. +...+.+++|+|++
T Consensus       289 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          289 LWNPESAEQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             EECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred             EeeCCCCccceeecCCCCceEEEEECCCC
Confidence            99999988766544 34568899999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.5e-37  Score=264.81  Aligned_cols=265  Identities=17%  Similarity=0.297  Sum_probs=224.9

Q ss_pred             eeeecccCCCce-EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           25 VTNKLQEGKRPL-YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        25 ~~~~~~~h~~~v-~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ....+.+|...| .++.|+      +++|++|+.|+ |++||+.+++.+..+..     |...|.+++|.  +++  +|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~~------~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-----h~~~V~~l~~~--~~~--~l~  177 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFE------DNYVITGADDKMIRVYDSINKKFLLQLSG-----HDGGVWALKYA--HGG--ILV  177 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--STT--EEE
T ss_pred             ceEEEcCCCCCcEEEEEEC------CCEEEEEcCCCcEEEEECCCCcEEEEEeC-----CCcCEEEEEEc--CCC--EEE
Confidence            445788998885 666664      47999999998 99999999887777653     78889888885  666  799


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeC-CCCceEEEeeCCCCEEEEecCCCee------------------
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP-LKPSLVVSASKDESVRLWNVQTGIC------------------  163 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~------------------  163 (346)
                      +|+.||+|++||+.+++.+..+.+|...|.+++|++ .++.++++++.|++|++||+++++.                  
T Consensus       178 s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             EEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            999999999999999999999999999999999995 1668999999999999999987653                  


Q ss_pred             -----EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          164 -----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       164 -----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                           +..+.   +|...+.++.  + ++.++++++.|+.|++||+++                       ...+..+..
T Consensus       258 ~~~~~~~~~~---~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~-----------------------~~~~~~~~~  308 (464)
T 3v7d_B          258 ENPYFVGVLR---GHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQ-----------------------MKCLYILSG  308 (464)
T ss_dssp             GCTTEEEEEC---CCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTT-----------------------TEEEEEECC
T ss_pred             CCeEEEEEcc---CccceEEEEc--C-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEecC
Confidence                 33344   6888888874  4 678999999999999999988                       445677888


Q ss_pred             cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      |...|.++.|+  ++++++++.|+.|++||+++++         .+..+.+|...|.+++|+  +  .+|++++.||.|+
T Consensus       309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~--~--~~l~s~s~dg~v~  375 (464)
T 3v7d_B          309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---------LMYTLQGHTALVGLLRLS--D--KFLVSAAADGSIR  375 (464)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEEC--S--SEEEEEETTSEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------EEEEEeCCCCcEEEEEEc--C--CEEEEEeCCCcEE
Confidence            99999999998  7899999999999999999876         778888999999999997  3  5899999999999


Q ss_pred             EEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          317 VWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       317 iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +||+.++...........+..++|+|++++
T Consensus       376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          376 GWDANDYSRKFSYHHTNLSAITTFYVSDNI  405 (464)
T ss_dssp             EEETTTCCEEEEEECTTCCCEEEEEECSSE
T ss_pred             EEECCCCceeeeecCCCCccEEEEEeCCCE
Confidence            999999876665555555777899998863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-37  Score=279.75  Aligned_cols=271  Identities=18%  Similarity=0.218  Sum_probs=207.4

Q ss_pred             ceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceE
Q 019117            9 EPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY   87 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~   87 (346)
                      ....|.+.............+.+|...|.+++|+|    ++++|++|+.|+ |++||+.++.....+..     |...|.
T Consensus       406 ~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-----h~~~v~  476 (694)
T 3dm0_A          406 SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS----DGQFALSGSWDGELRLWDLAAGVSTRRFVG-----HTKDVL  476 (694)
T ss_dssp             EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEE
T ss_pred             cEEEEEccCCCcccccccceecCCCCcEEEEEECC----CCCEEEEEeCCCcEEEEECCCCcceeEEeC-----CCCCEE
Confidence            34455554433333345567899999999999999    789999999998 99999998887776654     778888


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee---eccCCCceEEEEEeCCCC--ceEEEeeCCCCEEEEecCCCe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS---FVGHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      +++|+  |+++ +|++++.|++|++||.........   ..+|...|.+++|+| ++  ..|++++.|++|++||+++++
T Consensus       477 ~~~~s--~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          477 SVAFS--LDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             EEEEC--TTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEe--CCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCc
Confidence            88876  8998 999999999999999865543322   246889999999999 44  589999999999999999999


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      ....+.   +|.+.|++++|+| ++.+|++++.||.|++||+++.+                       .+..+. +...
T Consensus       553 ~~~~~~---~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~-----------------------~~~~~~-~~~~  604 (694)
T 3dm0_A          553 LRSTLA---GHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGK-----------------------KLYSLE-ANSV  604 (694)
T ss_dssp             EEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTE-----------------------EEECCB-CSSC
T ss_pred             EEEEEc---CCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc-----------------------eEEEec-CCCc
Confidence            988888   7999999999999 89999999999999999998832                       233332 3457


Q ss_pred             eEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccc-cc---------cccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          243 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DI---------LQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       243 i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~---------~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      |.+++|+ ...+++++.++.|++||+.+++........ ..         ......+...+++++|+|++  .+|++|+.
T Consensus       605 v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg--~~l~sgs~  682 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG--STLFSGYT  682 (694)
T ss_dssp             EEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS--SEEEEEET
T ss_pred             EEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC--CEEEEEcC
Confidence            8999998 445555566788999999987521100000 00         00001112247889999999  79999999


Q ss_pred             CCcEEEEEcCC
Q 019117          312 EGKIFVWELQS  322 (346)
Q Consensus       312 dg~i~iwd~~~  322 (346)
                      ||.|++|++..
T Consensus       683 Dg~i~iW~i~~  693 (694)
T 3dm0_A          683 DGVIRVWGIGR  693 (694)
T ss_dssp             TSEEEEEEC--
T ss_pred             CCeEEEEeccC
Confidence            99999999863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-37  Score=261.38  Aligned_cols=263  Identities=21%  Similarity=0.346  Sum_probs=214.8

Q ss_pred             ccCCCceE--EEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           30 QEGKRPLY--AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        30 ~~h~~~v~--~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      .+|...++  +++|++     +.+++.+.++.|++|+..++.....+..    .+...|.+++|+  |+++ +|++|+.|
T Consensus        88 ~~~~~~~~~~~~~~s~-----~~l~~~~~d~~v~lw~~~~~~~~~~~~~----~~~~~v~~v~~s--~~~~-~l~~~~~d  155 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN-----LNVVAVALERNVYVWNADSGSVSALAET----DESTYVASVKWS--HDGS-FLSVGLGN  155 (401)
T ss_dssp             TTCCCCTTCBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEEC----CTTCCEEEEEEC--TTSS-EEEEEETT
T ss_pred             CCCcCCceEEEEeecC-----CCEEEEECCCeEEEeeCCCCcEeEeeec----CCCCCEEEEEEC--CCCC-EEEEECCC
Confidence            46666544  455554     3444444444499999998887666553    267788888887  8898 99999999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      |.|++||+.+++.+..+.+|...|.+++|++   ..|++++.||.|++||++ ....+..+.   +|...|.+++|+| +
T Consensus       156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~-~  228 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQ---GHSSEVCGLAWRS-D  228 (401)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-T
T ss_pred             CeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEc---CCCCCeeEEEEcC-C
Confidence            9999999999999999999999999999964   699999999999999998 456677777   7999999999999 9


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEe--ecCe
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKS--VDNE  261 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~--~d~~  261 (346)
                      +.+|++++.|+.|++||++.                       ..++..+..|...|.+++|+   ..++++++  .|+.
T Consensus       229 ~~~l~s~~~d~~v~iwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          229 GLQLASGGNDNVVQIWDARS-----------------------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTC-----------------------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             CCEEEEEeCCCeEEEccCCC-----------------------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            99999999999999999998                       34566777899999999998   35777765  7999


Q ss_pred             EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE--EcCCCcEEEEEcCCCCcceeeeee---eeEE
Q 019117          262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIARLI---CFSL  336 (346)
Q Consensus       262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~---~~~~  336 (346)
                      |++||+.+++         .+..+. +...|.+++|+|++  .++++  |+.||.|++||+.+++......+.   +.+.
T Consensus       286 i~i~d~~~~~---------~~~~~~-~~~~v~~~~~s~~~--~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~  353 (401)
T 4aez_A          286 IHFWNAATGA---------RVNTVD-AGSQVTSLIWSPHS--KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL  353 (401)
T ss_dssp             EEEEETTTCC---------EEEEEE-CSSCEEEEEECSSS--SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred             EEEEECCCCC---------EEEEEe-CCCcEEEEEECCCC--CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence            9999999876         445554 45689999999999  57777  558999999999997666555443   4588


Q ss_pred             EEEecCCCCC
Q 019117          337 HVKYNPQSVY  346 (346)
Q Consensus       337 ~~~~spdg~~  346 (346)
                      +++|+|||++
T Consensus       354 ~~~~s~dg~~  363 (401)
T 4aez_A          354 YSALSPDGRI  363 (401)
T ss_dssp             EEEECTTSSE
T ss_pred             EEEECCCCCE
Confidence            9999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-37  Score=261.37  Aligned_cols=264  Identities=14%  Similarity=0.191  Sum_probs=211.7

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGING  108 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg  108 (346)
                      .|...|++++|+|....++.+|++++.|+ |++||+.+++.+..+..     |...|.+++|.  | ++. +|++++.||
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~i~~~~~~--~~~~~-~l~s~~~dg  138 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-----HGNAINELKFH--PRDPN-LLLSVSKDH  138 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-----CCSCEEEEEEC--SSCTT-EEEEEETTS
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-----CCCcEEEEEEC--CCCCC-EEEEEeCCC
Confidence            37788999999994433378999999998 99999998887776653     77889888887  8 677 999999999


Q ss_pred             eEEEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec-----------------
Q 019117          109 IIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA-----------------  168 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------  168 (346)
                      .|++||+.+++.+..+   ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.                 
T Consensus       139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
T 3k26_A          139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ  217 (366)
T ss_dssp             CEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred             eEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence            9999999999988888   78999999999999 88999999999999999999876554333                 


Q ss_pred             --------ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          169 --------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       169 --------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                              ....|...|.+++|+   +.++++++.|+.|++||++........         ..........+..+..|.
T Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          218 KIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDK---------IKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             EECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGG---------CCTTCCCEEEEEEEECSS
T ss_pred             eeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccc---------cccCCcchheeccccccC
Confidence                    111388999999998   458999999999999999874321111         001111224466778899


Q ss_pred             cceEEEEec----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCc
Q 019117          241 NYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       241 ~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                      ..|.+++|+    +++|++++.||.|++||+.+++..     ......+..|  ...|.+++|+|++  .+|++++.||.
T Consensus       286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~  358 (366)
T 3k26_A          286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDS--SILIAVCDDAS  358 (366)
T ss_dssp             CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTS--SEEEEEETTSE
T ss_pred             CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-----cccceEEcccccCCceEEEEeCCCC--CeEEEEeCCCE
Confidence            999999887    679999999999999999987521     1133356666  6899999999999  79999999999


Q ss_pred             EEEEEcCC
Q 019117          315 IFVWELQS  322 (346)
Q Consensus       315 i~iwd~~~  322 (346)
                      |++||+.+
T Consensus       359 i~iwd~~~  366 (366)
T 3k26_A          359 IWRWDRLR  366 (366)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEecC
Confidence            99999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-36  Score=249.88  Aligned_cols=240  Identities=15%  Similarity=0.208  Sum_probs=207.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+|...|.+++|+|    ++++|++++.++ |++||+.+++...... +  ..+...+.+++|.  |+++ +|++++.||
T Consensus        94 ~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~--~~~~~~i~~~~~~--~~~~-~l~~~~~dg  163 (337)
T 1gxr_A           94 LNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPTPRIKAE-L--TSSAPACYALAIS--PDSK-VCFSCCSDG  163 (337)
T ss_dssp             SCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC--EEEEE-E--ECSSSCEEEEEEC--TTSS-EEEEEETTS
T ss_pred             cCCCCcEEEEEEcC----CCCEEEEEcCCCcEEEEECCCCCcceeee-c--ccCCCceEEEEEC--CCCC-EEEEEeCCC
Confidence            37999999999999    788999999888 9999998776322211 1  1366778888776  8888 999999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      .|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.    +...+.+++|+| ++.
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~  237 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGE  237 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSS
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC-CCC
Confidence            999999999999999999999999999999 88999999999999999999999988886    788999999999 899


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  266 (346)
                      ++++++.++.|++||++..                        ....+..|...|.++.|+  +++|++++.||.|++||
T Consensus       238 ~l~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          238 WLAVGMESSNVEVLHVNKP------------------------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             EEEEEETTSCEEEEETTSS------------------------CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCC------------------------CeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            9999999999999999872                        134566789999999998  78999999999999999


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +.+++         .+. ...|...+.+++|+|++  .+|++++.||.|++|++.
T Consensus       294 ~~~~~---------~~~-~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          294 TPYGA---------SIF-QSKESSSVLSCDISVDD--KYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TTTCC---------EEE-EEECSSCEEEEEECTTS--CEEEEEETTSCEEEEEEE
T ss_pred             CCCCe---------EEE-EecCCCcEEEEEECCCC--CEEEEecCCCeEEEEEEe
Confidence            99876         222 23467789999999999  799999999999999973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.3e-37  Score=250.72  Aligned_cols=233  Identities=16%  Similarity=0.192  Sum_probs=189.9

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC--cceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEe
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN  157 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd  157 (346)
                      .|.+.|.+++|+  |+|+ +|++|+.|++|+|||+..  .+.+..+.+|.+.|.+++|+|. ++.+|++|+.|++|++||
T Consensus         7 ~h~~~V~~~~~s--~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            7 AHNEMIHDAVMD--YYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             SCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             CCcCceEEEEEC--CCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            478889888876  9999 999999999999999974  3677889999999999999862 378999999999999999


Q ss_pred             cCCCe--eEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      +++++  .+..+.   +|...|.+++|+| +  +.+|++++.|+.|++||++....                     ...
T Consensus        84 ~~~~~~~~~~~~~---~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~---------------------~~~  138 (297)
T 2pm7_B           84 EENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGT---------------------TSP  138 (297)
T ss_dssp             BSSSCBCCCEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSC---------------------BCC
T ss_pred             cCCCceEEEEEee---cCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCc---------------------eee
Confidence            98774  445555   6999999999999 5  78999999999999999987210                     113


Q ss_pred             EEEeecccceEEEEecC---------------CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117          234 FIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  298 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~~---------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  298 (346)
                      ..+..|...|.+++|++               ++|++++.|++|++||+++.+.     .......+.+|...|.+++|+
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-----~~~~~~~l~~H~~~V~~v~~s  213 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS  213 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-----eEEEEEEecCCCCceEEEEEC
Confidence            45678999999999983               4899999999999999986541     112455778899999999999


Q ss_pred             ecCC-cceEEEEcCCCcEEEEEcCCCCcc---ee---eeeeeeEEEEEecCCCCC
Q 019117          299 CDFH-YNAAAIGNREGKIFVWELQSSPPV---LI---ARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       299 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~---~~---~~~~~~~~~~~~spdg~~  346 (346)
                      |++. ..+|++++.|+.|++||+.+....   ..   ..+...+.+++|+|+|++
T Consensus       214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  268 (297)
T 2pm7_B          214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  268 (297)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE
Confidence            9851 168999999999999999875321   11   123456899999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.7e-36  Score=253.30  Aligned_cols=197  Identities=15%  Similarity=0.107  Sum_probs=162.3

Q ss_pred             EEEcCCCCcEEE--EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           91 WACNVDGIPFLV--AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        91 ~~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      ++|+|||+ +++  +++.|++|+|||+.+++.+..+. |...|.+++|+| ++.++++++.+ .+++|+..+++.+....
T Consensus       139 v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          139 VYISREGT-VAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEECTTSS-CEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEEC
T ss_pred             EEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeee
Confidence            34569999 765  45578999999999999988886 778899999999 89999998855 56777777776654332


Q ss_pred             ccCCCCcceEEEEecCCCCcEEEEEecCC----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      . ..|...|.+++|+| ++.++++++.|+    .++.|++......                   ......+..|...|+
T Consensus       215 ~-~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          215 D-FDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------------VLRSKQVTNRFKGIT  273 (365)
T ss_dssp             C-CCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------------EEEEEEEESSCSCEE
T ss_pred             c-CCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------------ceeeeeecCCCCCeE
Confidence            1 15888999999999 899999998887    6888888763211                   123456778999999


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccc-ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +++|+  |++|++|+.|++|+|||+.+++         ++.. +.+|...|++++|+||+  ++|++||.|++|+|||+.
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~---------~~~~~~~gH~~~V~~v~fSpdg--~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIALVKLKDLS---------MSKIFKQAHSFAITEVTISPDS--TYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTE---------EEEEETTSSSSCEEEEEECTTS--CEEEEEETTSEEEEEECC
T ss_pred             eEEECCCCCceEEEcCCCEEEEEECCCCc---------EEEEecCcccCCEEEEEECCCC--CEEEEEeCCCeEEEEEcC
Confidence            99998  8899999999999999999876         5665 57899999999999999  799999999999999997


Q ss_pred             CC
Q 019117          322 SS  323 (346)
Q Consensus       322 ~~  323 (346)
                      ..
T Consensus       343 ~~  344 (365)
T 4h5i_A          343 LN  344 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-36  Score=258.13  Aligned_cols=246  Identities=17%  Similarity=0.269  Sum_probs=207.5

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      .|...|++++|+|    ++.+|++++.++ |++||+.+++.+..+..     |...|.+++|.    +. +|++++.||.
T Consensus       132 ~~~~~v~~v~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~----~~-~l~~~~~dg~  197 (401)
T 4aez_A          132 DESTYVASVKWSH----DGSFLSVGLGNGLVDIYDVESQTKLRTMAG-----HQARVGCLSWN----RH-VLSSGSRSGA  197 (401)
T ss_dssp             CTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEEE----TT-EEEEEETTSE
T ss_pred             CCCCCEEEEEECC----CCCEEEEECCCCeEEEEECcCCeEEEEecC-----CCCceEEEEEC----CC-EEEEEcCCCC
Confidence            3899999999999    789999999888 99999998887776653     77888888883    44 9999999999


Q ss_pred             EEEEEcc-CcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          110 IRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       110 i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      |++||+. ....+..+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++.+..+.   .|...|.+++|+|++..
T Consensus       198 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~  273 (401)
T 4aez_A          198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSN  273 (401)
T ss_dssp             EEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTT
T ss_pred             EEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCC
Confidence            9999998 4567788899999999999999 89999999999999999999999998887   79999999999996667


Q ss_pred             EEEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE--eecCeE
Q 019117          189 RIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK--SVDNEI  262 (346)
Q Consensus       189 ~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~--~~d~~i  262 (346)
                      ++++++  .|+.|++||+++.                       ..+..+ .+...|.++.|+  +.+++++  +.||.|
T Consensus       274 ll~~~~gs~d~~i~i~d~~~~-----------------------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i  329 (401)
T 4aez_A          274 LLATGGGTMDKQIHFWNAATG-----------------------ARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNL  329 (401)
T ss_dssp             EEEEECCTTTCEEEEEETTTC-----------------------CEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEE
T ss_pred             EEEEecCCCCCEEEEEECCCC-----------------------CEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcE
Confidence            778765  7999999999872                       233344 366789999998  7788884  489999


Q ss_pred             EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      ++||+.+++.       .....+.+|...|.+++|+|++  .+|++++.||.|++|++.+++.+.
T Consensus       330 ~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg--~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          330 SIWSYSSSGL-------TKQVDIPAHDTRVLYSALSPDG--RILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             EEEEEETTEE-------EEEEEEECCSSCCCEEEECTTS--SEEEEECTTSEEEEEECCC-----
T ss_pred             EEEecCCccc-------eeEEEecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEECCCCcccc
Confidence            9999987541       1344567889999999999999  799999999999999999987554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=257.30  Aligned_cols=263  Identities=13%  Similarity=0.169  Sum_probs=209.5

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eeeeEeeeecCCCccceEEEEEE----EcCCCCcEEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWA----CNVDGIPFLVA  103 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~l~~  103 (346)
                      .+|..+|.+++|+|+.+ ++.+|++++.++ |++||+.+++ ....+.     .|...|.++.|.    ++|+++ +|++
T Consensus        62 ~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~s~~~~-~l~~  134 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVK-----GHKEIINAIDGIGGLGIGEGAP-EIVT  134 (357)
T ss_dssp             EEESSCEEEEECTTCCT-TTCCEEEEETTSCEEEECTTSCSSCSEEEC-----CCSSCEEEEEEESGGGCC-CCC-EEEE
T ss_pred             ecccCcEEEEEEcCCCC-CCceEEEecCCCeEEEEeCCCCCccEEEEE-----ecccceEEEeeccccccCCCcc-EEEE
Confidence            37999999999999211 268999999888 9999998877 555554     378889999874    568898 9999


Q ss_pred             eecCCeEEEEEccCcc-eeeeeccCCC----ceEEEE----EeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117          104 GGINGIIRVIDVSNEK-LHKSFVGHGD----SINEIR----TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      ++.||.|++||+.+++ .+..+..|.+    .+.+++    |+| ++.+|++++.|+.|++||+++++......    |.
T Consensus       135 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~  209 (357)
T 3i2n_A          135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETN----IK  209 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEE----CS
T ss_pred             EeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecC----CC
Confidence            9999999999999887 6777766554    899998    677 88999999999999999999998866654    88


Q ss_pred             cceEEEEecCC--CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C
Q 019117          175 NEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G  250 (346)
Q Consensus       175 ~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~  250 (346)
                      ..|.+++|+|.  ++.++++++.||.|++||++......                  .........|...|.++.|+  +
T Consensus       210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~  271 (357)
T 3i2n_A          210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK------------------GFASVSEKAHKSTVWQVRHLPQN  271 (357)
T ss_dssp             SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT------------------EEEEEEEECCSSCEEEEEEETTE
T ss_pred             CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc------------------ceeeeccCCCcCCEEEEEECCCC
Confidence            99999999984  57889999999999999998832100                  11122445899999999998  4


Q ss_pred             C-EEEEEeecCeEEEEcCCCCCCCCCC----------ccccccccccCCCcCeeEEEEeecCCcceEE-EEcCCCcEEEE
Q 019117          251 D-FILSKSVDNEIVLWEPKMKEQSPGE----------GTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIFVW  318 (346)
Q Consensus       251 ~-~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~iw  318 (346)
                      . +|++++.||.|++||++........          .....+..+..|...|.+++|+|++  .+|+ +++.||.|++|
T Consensus       272 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          272 RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK--RGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS--TTEEEEEETTSEEEEE
T ss_pred             CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC--CeEEEEecCCCcEEEE
Confidence            4 8999999999999999876532111          1123567788899999999999999  5677 89999999999


Q ss_pred             EcCCCC
Q 019117          319 ELQSSP  324 (346)
Q Consensus       319 d~~~~~  324 (346)
                      |+.+.+
T Consensus       350 ~~~~~~  355 (357)
T 3i2n_A          350 IVTKLN  355 (357)
T ss_dssp             EECC--
T ss_pred             ECCCcc
Confidence            998765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-36  Score=292.69  Aligned_cols=270  Identities=16%  Similarity=0.264  Sum_probs=223.5

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ...+.+|.+.|++++|+|    +++++|+|+.|+ |++||..+++.+..+..     |...|.+++|+  |+++ +|+++
T Consensus       608 ~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-----h~~~v~~~~~s--~~~~-~l~s~  675 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQ----DGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFS--SDDS-YIATC  675 (1249)
T ss_dssp             SEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEEC--TTSS-EEEEE
T ss_pred             eEEEecccccEEEEEECC----CCCEEEEEeCCCeEEEEECCCCCEEEEecc-----CCCCEEEEEEe--cCCC-EEEEE
Confidence            345689999999999999    789999999998 99999999988777663     77888888876  9998 99999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      +.||.|++||+.+++.+..+.+|...|.+++|+|. +..++++|+.|+.|++||+++++.+..+.   +|...|++++|+
T Consensus       676 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~s  752 (1249)
T 3sfz_A          676 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFS  752 (1249)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC---CCSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec---CCCCCEEEEEEe
Confidence            99999999999999999999999999999999984 34578999999999999999999999988   799999999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCC------------CC--C--C----------------Ccccee
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP------------SK--F--P----------------TKYVQF  231 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~--~--~----------------~~~~~~  231 (346)
                      | ++.++++++.||.|++||++................            ..  +  .                ......
T Consensus       753 p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          753 P-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL  831 (1249)
T ss_dssp             S-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred             c-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence            9 899999999999999999987543222111000000            00  0  0                000001


Q ss_pred             ceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          232 PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       232 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                      .......|...|.++.|+  +.++++++.|+.|++||+.++.         .+..+.+|...|.+++|+|++  .+|+++
T Consensus       832 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------~~~~~~~h~~~v~~v~~spdg--~~l~s~  900 (1249)
T 3sfz_A          832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------KVADCRGHLSWVHGVMFSPDG--SSFLTA  900 (1249)
T ss_dssp             EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTS--SEEEEE
T ss_pred             eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------eeeecCCCccceEEEEECCCC--CEEEEE
Confidence            111223688899999998  8899999999999999999876         677888999999999999999  789999


Q ss_pred             cCCCcEEEEEcCC
Q 019117          310 NREGKIFVWELQS  322 (346)
Q Consensus       310 ~~dg~i~iwd~~~  322 (346)
                      +.||.|++||+.+
T Consensus       901 s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          901 SDDQTIRVWETKK  913 (1249)
T ss_dssp             ETTSCEEEEEHHH
T ss_pred             eCCCeEEEEEccc
Confidence            9999999999764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.6e-37  Score=253.26  Aligned_cols=275  Identities=11%  Similarity=0.037  Sum_probs=216.3

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      .....+|.+.|++++|+|    ++.+|++++.|+ |++|++.++..........  .|...|.+++|.  |+++.+|++|
T Consensus         4 ~~~~~~h~~~v~~~~~s~----~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~l~~~   75 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI--DNTDLQIYVG   75 (342)
T ss_dssp             EECSSCCSSCEEEEEEEG----GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE--ESSSEEEEEE
T ss_pred             eecccCCCCcEEEEEEcC----CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEEC--CCCCcEEEEE
Confidence            344578999999999999    789999999888 9999998877222222221  377889999887  6653278999


Q ss_pred             ecCCeEEEEEc-cCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC---------CeeEEEecccCC
Q 019117          105 GINGIIRVIDV-SNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---------GICILIFAGAGG  172 (346)
Q Consensus       105 ~~dg~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~  172 (346)
                      +.||.|++||+ .+++. ..+.+  |...|.+++|+|  +..|++++.|+.|++||+++         ++++..+.    
T Consensus        76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----  148 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----  148 (342)
T ss_dssp             ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----
T ss_pred             cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----
Confidence            99999999999 77654 67788  999999999998  78999999999999999987         66666664    


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      |...|.+++|+| ++  +++++.|+.|++||++. ...                     ........|...+.++.|+  
T Consensus       149 ~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~---------------------~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          149 VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDD---------------------NGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTC---------------------CCEEEECSCSSCEEEEEECSG
T ss_pred             eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccc---------------------cceeeecCCCCceeEEEECCC
Confidence            889999999998 54  99999999999999987 321                     1122344577889999996  


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC---------cCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                       ++++++++.||.|++|+++......   .......+..|.         ..|.+++|+|++  .+|++++.||.|++||
T Consensus       205 ~~~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          205 EQEGYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCWN  279 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT--CCEEEEETTSCEEEEE
T ss_pred             CCCEEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEEEEEcCCC--CEEEEecCCceEEEEc
Confidence             5799999999999999998761000   001344555554         499999999999  7899999999999999


Q ss_pred             cCCCCcceeeee--eeeEEEEEecCCCCC
Q 019117          320 LQSSPPVLIARL--ICFSLHVKYNPQSVY  346 (346)
Q Consensus       320 ~~~~~~~~~~~~--~~~~~~~~~spdg~~  346 (346)
                      +.+++.+..+..  ...+.+++  |+|++
T Consensus       280 ~~~~~~~~~~~~~h~~~v~~~~--~~~~~  306 (342)
T 1yfq_A          280 LQTRKKIKNFAKFNEDSVVKIA--CSDNI  306 (342)
T ss_dssp             TTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred             CccHhHhhhhhcccCCCceEec--CCCCe
Confidence            999886655443  55678888  88864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-38  Score=266.39  Aligned_cols=261  Identities=15%  Similarity=0.132  Sum_probs=199.1

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      ++.|.++|++++|+|    ++++||+++.|+ |++|++.++  .....+.     .|...|.+++|+  |+++ +|++++
T Consensus         7 ~~~~~~~v~~~~~s~----~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~s--~~~~-~l~s~s   74 (377)
T 3dwl_C            7 LHILPKPSYEHAFNS----QRTEFVTTTATNQVELYEQDGNGWKHARTFS-----DHDKIVTCVDWA--PKSN-RIVTCS   74 (377)
T ss_dssp             EEECSSCCSCCEECS----SSSEEECCCSSSCBCEEEEETTEEEECCCBC-----CCSSCEEEEEEC--TTTC-CEEEEE
T ss_pred             EecCCCcEEEEEECC----CCCEEEEecCCCEEEEEEccCCceEEEEEEe-----cCCceEEEEEEe--CCCC-EEEEEe
Confidence            345778999999999    789999998888 999999877  4444443     377889888887  8888 999999


Q ss_pred             cCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCC-CCcceE
Q 019117          106 INGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGG-HRNEVL  178 (346)
Q Consensus       106 ~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~-~~~~v~  178 (346)
                      .|+.|++||+.+++   ....+..|...|.+++|+| ++.+|++++.|+.|++||+++++.   ...+.   . |...|+
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~v~  150 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLK---RPLRSTIL  150 (377)
T ss_dssp             TTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEEC---SSCCSCEE
T ss_pred             CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEee---cccCCCeE
Confidence            99999999999877   6677788999999999999 889999999999999999998873   55665   5 999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc-cceeceEEEeecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK-YVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      +++|+| ++.+|++++.|+.|++||++........      ........ .....+..+ .|...|.+++|+  +++|++
T Consensus       151 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  222 (377)
T 3dwl_C          151 SLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKP------EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY  222 (377)
T ss_dssp             EEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CC------CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred             EEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCc------cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence            999999 8899999999999999999752211100      00000000 113334445 899999999998  789999


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++.|+.|++||+.+++.     ....+..+..|...|.+++|+|++  .+|++++.++.+ +|+..
T Consensus       223 ~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          223 AGHDSSVTIAYPSAPEQ-----PPRALITVKLSQLPLRSLLWANES--AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EETTTEEC-CEECSTTS-----CEEECCCEECSSSCEEEEEEEETT--EEEEEESSSSEE-EECCC
T ss_pred             EeCCCcEEEEECCCCCC-----cceeeEeecCCCCceEEEEEcCCC--CEEEEEcCCcEE-EEEeC
Confidence            99999999999998762     111267788899999999999999  789988877665 67665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.3e-37  Score=260.40  Aligned_cols=267  Identities=16%  Similarity=0.262  Sum_probs=209.2

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCeEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGIIR  111 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~  111 (346)
                      ....++++|.   ...++++++.++ |+||++...... ..+..+  ..|...|.+++|+  | ++. +|++|+.||.|+
T Consensus        36 ~~~~~~~~~~---~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~--p~~~~-~l~s~s~dg~v~  107 (402)
T 2aq5_A           36 DSGFCAVNPK---FMALICEASGGGAFLVLPLGKTGRVDKNVPLV--CGHTAPVLDIAWC--PHNDN-VIASGSEDCTVM  107 (402)
T ss_dssp             SSCSEEECSS---EEEEEBCCSSSCCEEEEETTCCEECCTTCCCB--CCCSSCEEEEEEC--TTCTT-EEEEEETTSEEE
T ss_pred             CCCcEEECCC---eEEEEEEEcCCCEEEEEECccCCCCCCCCceE--ecCCCCEEEEEeC--CCCCC-EEEEEeCCCeEE
Confidence            4456888871   223455567677 999998654332 222211  2478899888887  8 677 999999999999


Q ss_pred             EEEccCc-------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe--cccCCCCcceEEEEe
Q 019117          112 VIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF--AGAGGHRNEVLSVDF  182 (346)
Q Consensus       112 iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~  182 (346)
                      +||+.++       +.+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+  .   .|...|.+++|
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~  184 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD---VHPDTIYSVDW  184 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT---TCCSCEEEEEE
T ss_pred             EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC---CCCCceEEEEE
Confidence            9999987       5678889999999999999943479999999999999999999999888  5   69999999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccc-eEEEEec--CCEEEEE--
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNY-VDCNRWL--GDFILSK--  256 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~--~~~l~~~--  256 (346)
                      +| ++.+|++++.|+.|++||++.                       ...+..+ ..|... +.++.|+  +.+|+++  
T Consensus       185 ~~-~~~~l~~~~~d~~i~iwd~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  240 (402)
T 2aq5_A          185 SR-DGALICTSCRDKRVRVIEPRK-----------------------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS  240 (402)
T ss_dssp             CT-TSSCEEEEETTSEEEEEETTT-----------------------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred             CC-CCCEEEEEecCCcEEEEeCCC-----------------------CceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence            99 899999999999999999988                       3344455 567665 8889998  6788888  


Q ss_pred             -eecCeEEEEcCCCCCCCCCCcccccccccc-CCCcCeeEEEEeecCCcceE-EEEcCCCcEEEEEcCCCCc-ce-eeee
Q 019117          257 -SVDNEIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQSSPP-VL-IARL  331 (346)
Q Consensus       257 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l-~~~~~dg~i~iwd~~~~~~-~~-~~~~  331 (346)
                       +.|+.|++||+++.+.        .+.... .+...+.+++|+|++  .+| ++|+.||.|++||+.++++ +. ...+
T Consensus       241 ~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~--~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          241 RMSERQVALWDTKHLEE--------PLSLQELDTSSGVLLPFFDPDT--NIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             TTCCEEEEEEETTBCSS--------CSEEEECCCCSSCEEEEEETTT--TEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             CCCCceEEEEcCccccC--------CceEEeccCCCceeEEEEcCCC--CEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence             7899999999998652        122222 355679999999999  456 5677899999999999884 22 2222


Q ss_pred             --eeeEEEEEecCCCCC
Q 019117          332 --ICFSLHVKYNPQSVY  346 (346)
Q Consensus       332 --~~~~~~~~~spdg~~  346 (346)
                        ...+.+++|+|++.+
T Consensus       311 ~~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGL  327 (402)
T ss_dssp             CCSSCCSEEEECCGGGS
T ss_pred             ccCCcccceEEeccccc
Confidence              366899999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-36  Score=259.26  Aligned_cols=260  Identities=11%  Similarity=0.068  Sum_probs=211.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|.+.|++++|+|    ++++|++++.|+ |++||+.+++.+..+..     |...|.+++|+  |+++ +|
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~l  196 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFP----SGEALISSSQDMQLKIWSVKDGSNPRTLIG-----HRATVTDIAII--DRGR-NV  196 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCCCEEEEC-----CSSCEEEEEEE--TTTT-EE
T ss_pred             cceeeecccccCccEEEEECC----CCCEEEEEeCCCeEEEEeCCCCcCceEEcC-----CCCcEEEEEEc--CCCC-EE
Confidence            455666789999999999999    788999999998 99999999888777754     77889888887  8898 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeecc---CCCceEEEE---------------------EeCCCCceEEEeeCCCCEEEEe
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIR---------------------TQPLKPSLVVSASKDESVRLWN  157 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~~l~s~~~d~~i~iwd  157 (346)
                      ++++.|+.|++||+.+++.+..+..   |...|.+++                     |+| ++.+|++++.||.|++||
T Consensus       197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEE
T ss_pred             EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEE
Confidence            9999999999999999998888864   344455544                     567 788999999999999999


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      +++++.+..+..  .|...|.+++|+| ++. +|++++.||.|++||+++..                      .++..+
T Consensus       276 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~----------------------~~~~~~  330 (420)
T 3vl1_A          276 VFSKEQTIQLPS--KFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPE----------------------CPVGEF  330 (420)
T ss_dssp             TTTCCEEEEECC--TTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTT----------------------SCSEEE
T ss_pred             CCCCceeEEccc--ccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCc----------------------Cchhhh
Confidence            999988777753  5889999999999 666 99999999999999998732                      234455


Q ss_pred             ee-cccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc---eEEEEcC
Q 019117          237 SV-HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN---AAAIGNR  311 (346)
Q Consensus       237 ~~-~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~---~l~~~~~  311 (346)
                      .. |...|.++.+. +++|++++.|+.|++|++.................+..+...|.+++|+|++  .   .+++++.
T Consensus       331 ~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~~g~l~a~g~  408 (420)
T 3vl1_A          331 LINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDD--ESNGEVLEVGK  408 (420)
T ss_dssp             EESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCS--SSSCEEEEEET
T ss_pred             hccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCC--CCcceEEEEcC
Confidence            55 67788888887 7799999999999999998754322111112233455678899999999999  5   5777777


Q ss_pred             CCcEEEEEcCC
Q 019117          312 EGKIFVWELQS  322 (346)
Q Consensus       312 dg~i~iwd~~~  322 (346)
                      +|.+.+|++++
T Consensus       409 ~g~~~~~~~~~  419 (420)
T 3vl1_A          409 NNFCALYNLSN  419 (420)
T ss_dssp             TTEEEEEESCC
T ss_pred             CceEEEEeccC
Confidence            89999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=256.30  Aligned_cols=286  Identities=17%  Similarity=0.252  Sum_probs=218.6

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee--------cCCCccceEEEEEEEc
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV--------DEDKEESFYTVSWACN   94 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~   94 (346)
                      +....+.+|.++|++++|+|.   ++++||+++.|+ |++|++.++.....+....        ...|...|.+++|.  
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  108 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPV---EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY--  108 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTT---TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC--
T ss_pred             cceeeeeccCCcEEEEEEecC---CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc--
Confidence            344566889999999999982   468999999888 9999998877655543211        12377889888887  


Q ss_pred             C-CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117           95 V-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAGAG  171 (346)
Q Consensus        95 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  171 (346)
                      | ++. +|++++.||.|++||+.+++....+. +...+.++.++|..  +.++++++.|+.|++||+++++.+..+.   
T Consensus       109 ~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---  183 (408)
T 4a11_B          109 PHDTG-MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---  183 (408)
T ss_dssp             TTCTT-CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---
T ss_pred             cCCCc-EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---
Confidence            7 555 99999999999999999999888777 77889999999842  3389999999999999999999988888   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      .|...|.+++|+|++..++++++.||.|++||++........-...       ..............|...|.+++|+  
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH-------NGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT-------TTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc-------ccccceeeccccccccCceeEEEEcCC
Confidence            7999999999999434479999999999999998743211100000       0000011122335688999999998  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCC--------------------------------------ccccccccccCCCcC
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGE--------------------------------------GTADILQKYPVPECD  291 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~  291 (346)
                      +++|++++.|+.|++||+.+++.....                                      .....+..+.+|...
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  336 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT  336 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence            789999999999999999887542211                                      122345666789999


Q ss_pred             eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                      |.+++|+|++  .+|++++.||.|++||+.+++++..
T Consensus       337 v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          337 VDCCVFQSNF--QELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EEEEEEETTT--TEEEEEETTSCEEEEEECC------
T ss_pred             EEEEEEcCCC--CEEEEECCCCeEEEEeCCCCCccCC
Confidence            9999999999  7999999999999999999876553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-37  Score=268.42  Aligned_cols=266  Identities=11%  Similarity=0.066  Sum_probs=202.0

Q ss_pred             eeecccCCCceEEEEEEeec--CCCccEEEEEcCCc-EEEEEeccCceee--e--E--eeeecCCCccceEEEEEEEcCC
Q 019117           26 TNKLQEGKRPLYAVVFNFID--SRYFNVFATVGGNR-VTVYQCLEGGVIA--A--L--QSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~--~~~~~~la~~~~~~-v~i~~~~~~~~~~--~--~--~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      ...+.+|.+.|++|+|+|..  ..++.+||+++.|+ |++||+..+....  .  +  .......|...|.+++|.  ++
T Consensus       200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s--~~  277 (524)
T 2j04_B          200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL--SP  277 (524)
T ss_dssp             EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES--SS
T ss_pred             EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec--CC
Confidence            34567788999999999931  11367999999998 9999997664220  0  0  001112367888888886  54


Q ss_pred             CCcEEEEeecCCeEEEEEccCcc-eeeeeccCCCceEEE--EEeCCCC-ceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEI--RTQPLKP-SLVVSASKDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                       . .|++|+.||+|++||+.+++ +...+.+|...|.+|  .|+| ++ .+|++|+.|++|+|||+++++++..+.   +
T Consensus       278 -~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~  351 (524)
T 2j04_B          278 -T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTV---S  351 (524)
T ss_dssp             -S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEE---E
T ss_pred             -C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccc---c
Confidence             3 79999999999999998764 455688999999999  5677 65 899999999999999999888776665   4


Q ss_pred             CC--cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          173 HR--NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       173 ~~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      |.  ..|.+++|+| ++..+++++.|++|++||++.                       ...+..+.+|...|.+++|+ 
T Consensus       352 ~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~-----------------------~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          352 RFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA-----------------------AFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             ECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC-----------------------TTCCEEEEECSSCEEEEECCS
T ss_pred             ccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc-----------------------cccceeeecCCCceEEEEeCC
Confidence            54  3588999999 888899999999999999988                       23455677899999999999 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCC-----------------Cc------------------cccccccccCCCcCee
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPG-----------------EG------------------TADILQKYPVPECDIW  293 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~-----------------~~------------------~~~~~~~~~~~~~~v~  293 (346)
                       +.+|++|+.|++|++||+........                 ..                  ....+..+.+|...|.
T Consensus       408 ~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~  487 (524)
T 2j04_B          408 LHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINIT  487 (524)
T ss_dssp             SCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCC
T ss_pred             CCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEE
Confidence             78999999999999999754311100                 00                  0223455667889999


Q ss_pred             EEEEeecCC-cceEEEEcCCCcEEEEEcCCC
Q 019117          294 FIKFSCDFH-YNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       294 ~~~~s~~~~-~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +++|+|+++ +.++|+|+.||.|+||++...
T Consensus       488 ~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          488 CTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             EEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            999999973 358999999999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.5e-36  Score=253.65  Aligned_cols=264  Identities=14%  Similarity=0.125  Sum_probs=210.6

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .++....+.+|...|.+++|+|    ++++|++++.|+ |++||+.+++....+..   ..+...+.+++|.  |+++ +
T Consensus        41 ~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~--~~~~-~  110 (372)
T 1k8k_C           41 KWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGRTWKPTLVI---LRINRAARCVRWA--PNEK-K  110 (372)
T ss_dssp             EEEEEEEEECCSSCEEEEEEET----TTTEEEEEETTSCEEEEEEETTEEEEEEEC---CCCSSCEEEEEEC--TTSS-E
T ss_pred             cEEeeeeecCCCCcccEEEEeC----CCCEEEEEcCCCeEEEEECCCCeeeeeEEe---ecCCCceeEEEEC--CCCC-E
Confidence            3457778889999999999999    789999999888 99999987765444332   2367788888877  8898 9


Q ss_pred             EEEeecCCeEEEEEccCcce----eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec------------------
Q 019117          101 LVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV------------------  158 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~------------------  158 (346)
                      |++++.|+.|++||+..++.    ......|...|.+++|+| ++.+|++++.|+.|++||+                  
T Consensus       111 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  189 (372)
T 1k8k_C          111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM  189 (372)
T ss_dssp             EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred             EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence            99999999999999988763    233367899999999999 8899999999999999995                  


Q ss_pred             CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      ..++.+..+.   +|...|.+++|+| ++.+|++++.|+.|++||+++                       ...+..+..
T Consensus       190 ~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~  242 (372)
T 1k8k_C          190 PFGELMFESS---SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK-----------------------KMAVATLAS  242 (372)
T ss_dssp             CTTCEEEECC---CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG-----------------------TTEEEEEEC
T ss_pred             chhhheEecC---CCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC-----------------------CceeEEEcc
Confidence            3677888887   7999999999999 889999999999999999998                       345667788


Q ss_pred             cccceEEEEec--CCEEEEEeecCeEEEEcCCC--CCC--CCC---------------------Ccccccc------ccc
Q 019117          239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM--KEQ--SPG---------------------EGTADIL------QKY  285 (346)
Q Consensus       239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~--~~~--~~~---------------------~~~~~~~------~~~  285 (346)
                      |...|.+++|+  +.+++++ .|+.|++|++..  ++.  ...                     .......      ..+
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            99999999998  5555555 999999999987  310  000                     0000011      223


Q ss_pred             -cCCCcCeeEEEEeecCC--cceEEEEcCCCcEEEEEcCCCC
Q 019117          286 -PVPECDIWFIKFSCDFH--YNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       286 -~~~~~~v~~~~~s~~~~--~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                       .+|...|++++|++...  ..+|++|+.||.|++||+.+++
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence             47899999999775431  1389999999999999998765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.8e-38  Score=267.42  Aligned_cols=274  Identities=14%  Similarity=0.132  Sum_probs=188.7

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      .....+.+|.++|++|+|+|.   ++.+|++++.|+ |++||+..+. ...+...  ..+...+.+++  ++|+++ +|+
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~--~~~~~~~~~~~--~~~~~~-~l~  225 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGTTRLQDFKGNI-LRVFASS--DTINIWFCSLD--VSASSR-MVV  225 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSCEEEEETTSCE-EEEEECC--SSCSCCCCCEE--EETTTT-EEE
T ss_pred             eeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEeeccCCc-eeEEecc--CCCCccEEEEE--ECCCCC-EEE
Confidence            344556899999999999983   468999999999 9999986543 3333221  11223344444  459998 999


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      +|+.||.|++||++ ++.+..+.+|...|.+++|+|.+..+|++|+.|++|++||+++.+....+....+|...|++++|
T Consensus       226 ~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  304 (435)
T 4e54_B          226 TGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF  304 (435)
T ss_dssp             EECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCB
T ss_pred             EEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeE
Confidence            99999999999986 45677888999999999999955668999999999999999987766555444479999999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE-EEEEeec
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF-ILSKSVD  259 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-l~~~~~d  259 (346)
                      +| ++.+|++++.||.|++||++..........    +......  ....+.........+..+.+.  +.. ++++..+
T Consensus       305 sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  377 (435)
T 4e54_B          305 SP-DGARLLTTDQKSEIRVYSASQWDCPLGLIP----HPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL  377 (435)
T ss_dssp             CT-TSSEEEEEESSSCEEEEESSSSSSEEEECC----CCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred             CC-CCCeeEEEcCCCEEEEEECCCCccceEEec----ccccccc--cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence            99 899999999999999999988443221110    0000000  000000000111122222222  222 2223345


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccc-cCCCcCeeEE-EEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFI-KFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~-~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      +.|++||..+++         .+..+ ..|...|.++ +|+|++  .+|++|+ |+.|+|||++++++.
T Consensus       378 ~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg--~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          378 RTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMG--DTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTS--SCEEEEC-SSEEEECCCC-----
T ss_pred             CEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCC--CEEEEEc-CCcEEEEECCcCeee
Confidence            689999999876         44443 4577788887 699999  6888876 789999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=260.69  Aligned_cols=274  Identities=15%  Similarity=0.093  Sum_probs=210.7

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc---eeeeEeeeec-------------------------------
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG---VIAALQSYVD-------------------------------   79 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~---~~~~~~~~~~-------------------------------   79 (346)
                      .++.+++|+|    +|++|+++..+.|++||+.+++   .+..+.....                               
T Consensus         5 ~p~~~v~~s~----dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            5 HPLQNLLTSR----DGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCCCEEEECS----SSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             ccEEEEEecC----CCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            5789999999    7788888877779999999998   4444332110                               


Q ss_pred             ------------------CCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEcc--Ccceeeeec--cCCCceEEEEE
Q 019117           80 ------------------EDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVS--NEKLHKSFV--GHGDSINEIRT  136 (346)
Q Consensus        80 ------------------~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~  136 (346)
                                        +.+...|.+++|+  |+++ +| ++++.||.|++||+.  +++.+..+.  .|...|.+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT--SDES-RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             -------------------CCCCCEEEEEEC--TTSS-EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEc--CCCC-EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence                              0122357777766  9998 75 899999999999999  888887776  56789999999


Q ss_pred             eCCCCceEEEeeCCCCEEEEecCCCeeEE----EecccCCCCcceEEEEecCCC---CcEEEEEecCCeEEEEEccccce
Q 019117          137 QPLKPSLVVSASKDESVRLWNVQTGICIL----IFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       137 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                      +| ++.+|++++.||.|++|++.+++...    .+.   +|...|++++|+| +   +.+|++++.|+.|++||++..  
T Consensus       158 sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~--  230 (450)
T 2vdu_B          158 AE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL---GHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQC--  230 (450)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE---ECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCT--
T ss_pred             cC-CCCEEEEEeCCCcEEEEecCCcccccccceeee---cccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCC--
Confidence            99 88999999999999999998877554    444   6999999999999 7   889999999999999999872  


Q ss_pred             eeeeceeecCCCCCCCCccceeceEE-EeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc--
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--  285 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--  285 (346)
                                           ..+.. +..|...|.+++|+ +++|++++.|++|++||+.+++..........+..+  
T Consensus       231 ---------------------~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  289 (450)
T 2vdu_B          231 ---------------------FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN  289 (450)
T ss_dssp             ---------------------TCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred             ---------------------ceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh
Confidence                                 23333 45799999999997 889999999999999999987631111000000000  


Q ss_pred             --------------cCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEc--CCC---CcceeeeeeeeEEEEEecCCC
Q 019117          286 --------------PVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWEL--QSS---PPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       286 --------------~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~spdg  344 (346)
                                    ......|..++|+|++  .+|++++ .|+.|++|++  .++   +.+......+.+.+++|+|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  366 (450)
T 2vdu_B          290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNL--PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE  366 (450)
T ss_dssp             TTSBC----------CBCCCEEEEEECSSS--SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE
T ss_pred             hcccccccccccccccceEEEEEEEEeCCC--CEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc
Confidence                          0223578999999999  6788777 8999999999  554   333344444678999999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-35  Score=254.90  Aligned_cols=259  Identities=17%  Similarity=0.343  Sum_probs=222.4

Q ss_pred             eeeeeecccCCCce-EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPL-YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v-~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ++....+.+|.+.| .++  ++    ++++|++|+.|+ |++||+.+++.+..+..     |...|.++++.    +. +
T Consensus       108 ~~~~~~l~~h~~~v~~~~--~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~----~~-~  171 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCL--QF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-----HTGGVWSSQMR----DN-I  171 (445)
T ss_dssp             CCCCEEEECSTTSCEEEE--EE----ETTEEEEEETTSCEEEEETTTCCEEEECCC-----CSSCEEEEEEE----TT-E
T ss_pred             cceeEEecccCCCcEEEE--EE----cCCEEEEEECCCcEEEEECCCCcEEEEEcC-----CCCCEEEEEec----CC-E
Confidence            44556789999876 554  44    468999999998 99999998887776653     77888888875    44 8


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      +++|+.||.|++||+.+++.+..+.+|...|.++.|++   ..+++|+.||+|++||+++++.+..+.   +|...|.++
T Consensus       172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~  245 (445)
T 2ovr_B          172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM---GHVAAVRCV  245 (445)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE---CCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc---CCcccEEEE
Confidence            99999999999999999999999999999999999965   679999999999999999999999988   799999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecC
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN  260 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~  260 (346)
                      +|   ++.++++++.||.|++||+++                       ...+..+..|...|.++.|++.++++++.|+
T Consensus       246 ~~---~~~~l~~~~~dg~i~iwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~  299 (445)
T 2ovr_B          246 QY---DGRRVVSGAYDFMVKVWDPET-----------------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT  299 (445)
T ss_dssp             EE---CSSCEEEEETTSCEEEEEGGG-----------------------TEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred             EE---CCCEEEEEcCCCEEEEEECCC-----------------------CcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence            98   456799999999999999988                       4456677889999999999999999999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee----eeeeEE
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----LICFSL  336 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~  336 (346)
                      .|++||+++++         .+..+..|...+.++.++  +  .+|++++.||.|++||+.+++.+..+.    +...+.
T Consensus       300 ~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          300 SIRVWDVETGN---------CIHTLTGHQSLTSGMELK--D--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT  366 (445)
T ss_dssp             CEEEEETTTCC---------EEEEECCCCSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             eEEEEECCCCC---------EEEEEcCCcccEEEEEEe--C--CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEE
Confidence            99999999876         677788888888877764  5  589999999999999999988766554    445588


Q ss_pred             EEEecC
Q 019117          337 HVKYNP  342 (346)
Q Consensus       337 ~~~~sp  342 (346)
                      +++|++
T Consensus       367 ~~~~~~  372 (445)
T 2ovr_B          367 CLQFNK  372 (445)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            888875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-35  Score=251.71  Aligned_cols=249  Identities=17%  Similarity=0.252  Sum_probs=206.0

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      ..+.+|...|++|+|+|    +|++||+|+.|+ |++||+.+++.+..+..     |...+.++++    ++. +|++|+
T Consensus       141 ~~~~~~~~~V~sv~fsp----dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-----h~~~v~~~s~----~~~-~l~sgs  206 (420)
T 4gga_A          141 LQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-----HSARVGSLSW----NSY-ILSSGS  206 (420)
T ss_dssp             EECCSTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEE----ETT-EEEEEE
T ss_pred             EEecCCCCcEEEEEECC----CCCEEEEEECCCeEEEEEcCCCcEEEEEeC-----CCCceEEEee----CCC-EEEEEe
Confidence            34567889999999999    789999999999 99999999888777654     6667766655    355 999999


Q ss_pred             cCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee----EEEecccCCCCcceEEE
Q 019117          106 INGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC----ILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~  180 (346)
                      .|+.+++||.... ..+..+.+|...+..+.|+| ++.++++++.|+.+++|+..+++.    +....   .|...|.++
T Consensus       207 ~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~---~~~~~V~~~  282 (420)
T 4gga_A          207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAV  282 (420)
T ss_dssp             TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC---CCSSCEEEE
T ss_pred             CCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeec---ccCCceeee
Confidence            9999999998765 45677889999999999999 899999999999999999987653    33444   689999999


Q ss_pred             EecCCCCcEEEEE--ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          181 DFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       181 ~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      +|+|.+..+++++  +.|++|++||+.+.                       .....+.. ...+.++.|+  ++.++++
T Consensus       283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----------------------~~~~~~~~-~~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          283 AWCPWQSNVLATGGGTSDRHIRIWNVCSG-----------------------ACLSAVDA-HSQVCSILWSPHYKELISG  338 (420)
T ss_dssp             EECTTCTTEEEEEECTTTCEEEEEETTTT-----------------------EEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred             eeCCCcccEEEEEeecCCCEEEEEeCCcc-----------------------ccceeecc-ccceeeeeecCCCCeEEEE
Confidence            9999777777764  47999999999983                       33444444 4567788887  6677665


Q ss_pred             e--ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          257 S--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       257 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                      +  .|+.|+|||+.+++         ++..+.+|.+.|++++|+||+  .+|++|+.|++|+|||+.+..+...
T Consensus       339 sg~~d~~I~iwd~~~~~---------~v~~l~gH~~~V~~l~~spdg--~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          339 HGFAQNQLVIWKYPTMA---------KVAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             ECTTTCCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EecCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCCCCccch
Confidence            4  69999999999877         788899999999999999999  7899999999999999988665443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4e-36  Score=257.58  Aligned_cols=253  Identities=22%  Similarity=0.338  Sum_probs=213.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+|...|++++|      ++++|++|+.|+ |++||..+++....+..     |...|.++++    +++ +|++|+.||
T Consensus       130 ~~~~~~v~~~~~------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~----~~~-~l~sg~~dg  193 (435)
T 1p22_A          130 SETSKGVYCLQY------DDQKIVSGLRDNTIKIWDKNTLECKRILTG-----HTGSVLCLQY----DER-VIITGSSDS  193 (435)
T ss_dssp             CSSCCCEEEEEC------CSSEEEEEESSSCEEEEESSSCCEEEEECC-----CSSCEEEEEC----CSS-EEEEEETTS
T ss_pred             cCCCCcEEEEEE------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-----CCCcEEEEEE----CCC-EEEEEcCCC
Confidence            567788999887      468999999988 99999998887777654     6778877766    566 999999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      .|++||+.+++.+..+.+|...|.+++|++   ..+++|+.||.|++||+++++.........+|...|.+++|   ++.
T Consensus       194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~  267 (435)
T 1p22_A          194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDK  267 (435)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETT
T ss_pred             eEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCC
Confidence            999999999999999999999999999975   59999999999999999988766322222279999999999   456


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCC
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~  268 (346)
                      ++++++.||.|++||+++                       ...+..+..|...|.++.++++++++++.||.|++||++
T Consensus       268 ~l~s~~~dg~i~vwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTST-----------------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE  324 (435)
T ss_dssp             EEEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCc-----------------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence            899999999999999988                       445677888999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC---------ccee-eeeeeeEEEE
Q 019117          269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---------PVLI-ARLICFSLHV  338 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~-~~~~~~~~~~  338 (346)
                      +++         .+..+.+|...|.+++|  ++  .+|++|+.||.|++||+.++.         .+.. ..+.+.+.++
T Consensus       325 ~~~---------~~~~~~~h~~~v~~~~~--~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          325 CGA---------CLRVLEGHEELVRCIRF--DN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             TCC---------EEEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             CCC---------EEEEEeCCcCcEEEEEe--cC--CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence            876         67888889999999999  55  689999999999999997765         2221 2233457777


Q ss_pred             Ee
Q 019117          339 KY  340 (346)
Q Consensus       339 ~~  340 (346)
                      +|
T Consensus       392 ~~  393 (435)
T 1p22_A          392 QF  393 (435)
T ss_dssp             EE
T ss_pred             Ee
Confidence            77

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-35  Score=252.33  Aligned_cols=262  Identities=20%  Similarity=0.330  Sum_probs=215.4

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV  115 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  115 (346)
                      ++.|+||+     +++||+|.++.|+|||..+++....+..   ..|...|++++|+  |+|+ +|++|+.||.|++||+
T Consensus       108 ~~~l~wS~-----~n~lAvgld~tV~lWd~~tg~~~~~~~~---~~~~~~V~sv~fs--pdg~-~lasgs~Dg~v~iWd~  176 (420)
T 4gga_A          108 LNLVDWSS-----GNVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDV  176 (420)
T ss_dssp             CBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEEC--TTSS-EEEEEETTSCEEEEET
T ss_pred             ceeEEECC-----CCEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCcEEEEEEC--CCCC-EEEEEECCCeEEEEEc
Confidence            56799986     4689998866699999999987776653   2467789888887  9999 9999999999999999


Q ss_pred             cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      .+++.+..+.+|...+.++.+++   ..|++|+.|+.+++||.... ..+..+.   +|...+..+.++| ++.++++++
T Consensus       177 ~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~---~h~~~~~~~~~~~-~g~~l~s~~  249 (420)
T 4gga_A          177 QQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGG  249 (420)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEE
T ss_pred             CCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEec---ccccceeeeeecC-CCCeeeeee
Confidence            99999999999999999998864   79999999999999998864 4455666   7999999999999 899999999


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEE--eecCeEEEEcCCC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK--SVDNEIVLWEPKM  269 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~--~~d~~i~iwd~~~  269 (346)
                      .|+.|++|+....+.                   ....+.....|...|.+++|+   +.+++++  +.|++|++||+.+
T Consensus       250 ~D~~v~i~~~~~~~~-------------------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          250 NDNLVNVWPSAPGEG-------------------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             TTSCEEEEESSCCSS-------------------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             ccccceEEeeccccc-------------------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            999999999987321                   122455677899999999998   5566654  4799999999998


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE--EcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                      ++         .+..+..+ ..+.++.|++++.  .+++  |+.|+.|+|||+.+++++..+. +.+.|++++|+|||++
T Consensus       311 ~~---------~~~~~~~~-~~v~~~~~~~~~~--~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~  378 (420)
T 4gga_A          311 GA---------CLSAVDAH-SQVCSILWSPHYK--ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             TE---------EEEEEECS-SCEEEEEEETTTT--EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             cc---------cceeeccc-cceeeeeecCCCC--eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            76         45555544 4789999999994  4444  4479999999999998766543 4556999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.3e-36  Score=259.00  Aligned_cols=269  Identities=18%  Similarity=0.305  Sum_probs=209.9

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..+....+.+|.+.|.+++|.      +.+|++|+.|+ |++||+.+++.+..+..     |...|.+++|.    +. +
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~~----~~-~  225 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQYD------ERVIITGSSDSTVRVWDVNTGEMLNTLIH-----HCEAVLHLRFN----NG-M  225 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEECC------SSEEEEEETTSCEEEEESSSCCEEEEECC-----CCSCEEEEECC----TT-E
T ss_pred             CCeEEEEEcCCCCcEEEEEEC------CCEEEEEcCCCeEEEEECCCCcEEEEEcC-----CCCcEEEEEEc----CC-E
Confidence            345667788999999999983      47999999998 99999999887776653     67788877774    34 8


Q ss_pred             EEEeecCCeEEEEEccCccee---eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          101 LVAGGINGIIRVIDVSNEKLH---KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      +++|+.||.|++||+.+++..   ..+.+|...|.+++|.   ++++++|+.||.|++||+++++.+..+.   +|...|
T Consensus       226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v  299 (435)
T 1p22_A          226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGI  299 (435)
T ss_dssp             EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCE
T ss_pred             EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEc---CCCCcE
Confidence            999999999999999988755   6778899999999993   5799999999999999999999999998   799999


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEe
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS  257 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  257 (346)
                      .+++++   +.++++|+.||.|++||+++                       ...+..+..|...|.++.|++++|++++
T Consensus       300 ~~~~~~---~~~l~~g~~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~l~sg~  353 (435)
T 1p22_A          300 ACLQYR---DRLVVSGSSDNTIRLWDIEC-----------------------GACLRVLEGHEELVRCIRFDNKRIVSGA  353 (435)
T ss_dssp             EEEEEE---TTEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred             EEEEeC---CCEEEEEeCCCeEEEEECCC-----------------------CCEEEEEeCCcCcEEEEEecCCEEEEEe
Confidence            999985   46899999999999999998                       3456778889999999999999999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEE
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLH  337 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  337 (346)
                      .||.|++||+.+.+..........+..+..|.+.|.+++|  ++  .+|++++.||.|++||+.+...........+...
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  429 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE--FQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRT  429 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS--SCEEECCSSSEEEEEC------------------
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC--CEEEEEeCCCEEEEEECCCCCCcccCCCCCCccc
Confidence            9999999999776532222222256777889999999999  55  6899999999999999998876555555555566


Q ss_pred             EEecC
Q 019117          338 VKYNP  342 (346)
Q Consensus       338 ~~~sp  342 (346)
                      +.|.+
T Consensus       430 ~~~~~  434 (435)
T 1p22_A          430 YTYIS  434 (435)
T ss_dssp             -----
T ss_pred             eeeec
Confidence            66654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.3e-36  Score=257.51  Aligned_cols=260  Identities=16%  Similarity=0.261  Sum_probs=211.4

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc----------CceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE----------GGVIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      ...+|.+.|++++|+|.   ++.+||+++.++ |++|++.+          ......+.     .|...+.+++|.  |+
T Consensus       123 ~~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~--~~  192 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWN--PN  192 (430)
T ss_dssp             EEEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEEC--TT
T ss_pred             EEEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeC--CC
Confidence            34689999999999992   267999999888 99999986          34444444     367788888887  77


Q ss_pred             CCcEEEEeecCCeEEEEEccCcce-------eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC---eeEEE
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG---ICILI  166 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~  166 (346)
                      +..+|++|+.||.|++||+.++..       ...+.+|...|.+++|+|.++.+|++++.|+.|++||++++   +.+..
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            766899999999999999987322       45667899999999999977889999999999999999987   46666


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      +.   .|...|++++|+|++..++++|+.||.|++||++..                      ..++..+..|...|.++
T Consensus       273 ~~---~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~----------------------~~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          273 VD---AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----------------------KLKLHSFESHKDEIFQV  327 (430)
T ss_dssp             EE---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT----------------------TSCSEEEECCSSCEEEE
T ss_pred             ee---cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----------------------CCCeEEeecCCCCEEEE
Confidence            66   699999999999944558999999999999999872                      23566788899999999


Q ss_pred             Eec--C-CEEEEEeecCeEEEEcCCCCCCCCC-----CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          247 RWL--G-DFILSKSVDNEIVLWEPKMKEQSPG-----EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       247 ~~~--~-~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      .|+  + .+|++++.|+.|++||+........     ......+..+.+|...|.+++|+|+++ .+|++++.||.|++|
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVW  406 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST-TEEEEEETTSEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC-CEEEEEECCCCEEEe
Confidence            998  4 4799999999999999987331110     001235667778899999999999993 289999999999999


Q ss_pred             EcCCC
Q 019117          319 ELQSS  323 (346)
Q Consensus       319 d~~~~  323 (346)
                      ++...
T Consensus       407 ~~~~~  411 (430)
T 2xyi_A          407 QMAEN  411 (430)
T ss_dssp             EECHH
T ss_pred             Ecccc
Confidence            99764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=242.40  Aligned_cols=258  Identities=16%  Similarity=0.242  Sum_probs=212.0

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+..|...|.+++|+|    ++.+|++++.++ |++|++........+..+  ..|...+.+++|    ++. +|
T Consensus        49 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~----~~~-~l  117 (313)
T 3odt_A           49 QWLGTVVYTGQGFLNSVCYDS----EKELLLFGGKDTMINGVPLFATSGEDPLYTL--IGHQGNVCSLSF----QDG-VV  117 (313)
T ss_dssp             SEEEEEEEECSSCEEEEEEET----TTTEEEEEETTSCEEEEETTCCTTSCC-CEE--CCCSSCEEEEEE----ETT-EE
T ss_pred             CEEEEEeecCCccEEEEEECC----CCCEEEEecCCCeEEEEEeeecCCCCcccch--hhcccCEEEEEe----cCC-EE
Confidence            445566788999999999999    789999999998 999998765433333322  237788888877    355 89


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++++.||.|++||  .++....+..|...+.++.|.|.++..+++++.|+.|++||  ..+....+..  .|...+.+++
T Consensus       118 ~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~--~~~~~i~~~~  191 (313)
T 3odt_A          118 ISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG--IHNDVVRHLA  191 (313)
T ss_dssp             EEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS--SCSSCEEEEE
T ss_pred             EEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec--cCcccEEEEE
Confidence            9999999999999  67788888899999999999987788999999999999999  4566666662  3889999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecC
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDN  260 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~  260 (346)
                      |+| ++. +++++.|+.|++||++.                       ...+..+..|...|.+++|+ ...+++++.|+
T Consensus       192 ~~~-~~~-~~~~~~dg~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg  246 (313)
T 3odt_A          192 VVD-DGH-FISCSNDGLIKLVDMHT-----------------------GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDR  246 (313)
T ss_dssp             EEE-TTE-EEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSCEEEEEECTTSCEEEEETTS
T ss_pred             EcC-CCe-EEEccCCCeEEEEECCc-----------------------hhhhhhhhcCCceEEEEEEecCCCEEEEecCC
Confidence            998 766 99999999999999988                       34567788899999999999 33799999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF  334 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  334 (346)
                      .|++||+.+++         .+..+..|...|.+++|+|++  . +++++.||.|++||+.+++........+.
T Consensus       247 ~v~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~~  308 (313)
T 3odt_A          247 TVRIWSKENGS---------LKQVITLPAISIWSVDCMSNG--D-IIVGSSDNLVRIFSQEKSRWASEDEIKGE  308 (313)
T ss_dssp             EEEEECTTTCC---------EEEEEECSSSCEEEEEECTTS--C-EEEEETTSCEEEEESCGGGCCC-------
T ss_pred             EEEEEECCCCc---------eeEEEeccCceEEEEEEccCC--C-EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence            99999999876         677788888899999999998  4 66789999999999999877665555443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=248.03  Aligned_cols=250  Identities=12%  Similarity=0.147  Sum_probs=215.8

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|...|.+++|+|    ++++|++++.|+ |++||+.+++.+..+.      +...+.+++|.  |+++ +|
T Consensus        64 ~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~--~~~~-~l  130 (369)
T 3zwl_B           64 GERLGTLDGHTGTIWSIDVDC----FTKYCVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEFS--PCGN-YF  130 (369)
T ss_dssp             CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEEC--TTSS-EE
T ss_pred             chhhhhhhhcCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEEc--cCCC-EE
Confidence            456677889999999999999    789999999988 9999999888777665      55678777776  8998 99


Q ss_pred             EEeecC-----CeEEEEEccCcc-----------eeeeeccCCC--ceEEEEEeCCCCceEEEeeCCCCEEEEecCC-Ce
Q 019117          102 VAGGIN-----GIIRVIDVSNEK-----------LHKSFVGHGD--SINEIRTQPLKPSLVVSASKDESVRLWNVQT-GI  162 (346)
Q Consensus       102 ~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~  162 (346)
                      ++++.+     +.|++||+....           ....+..|..  .+.+++|+| ++.+|++++.||.|++||+++ ++
T Consensus       131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  209 (369)
T 3zwl_B          131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYE  209 (369)
T ss_dssp             EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTE
T ss_pred             EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcE
Confidence            999988     999999997664           3344555665  899999999 889999999999999999998 78


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      .+..+.   .|...|.+++|+| ++.+|++++.|+.|++||+++.                       ..+..+. +...
T Consensus       210 ~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-----------------------~~~~~~~-~~~~  261 (369)
T 3zwl_B          210 YVDSID---LHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTL-----------------------QVLKKYE-TDCP  261 (369)
T ss_dssp             EEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-----------------------CEEEEEE-CSSC
T ss_pred             eEEEEe---cCCCceeEEEECC-CCCEEEEecCCceEEEEECCCC-----------------------ceeeeec-CCCC
Confidence            888887   7999999999999 8999999999999999999883                       2333333 7788


Q ss_pred             eEEEEec--CCEEEEEeecC--------------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceE
Q 019117          243 VDCNRWL--GDFILSKSVDN--------------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  306 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  306 (346)
                      +.++.|+  ++++++++.++              .+++||..+.+         .+..+.+|...|.+++|+|++  .+|
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~s~~~--~~l  330 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE---------EIGRVQGHFGPLNTVAISPQG--TSY  330 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS--SEE
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---------chhheecccCcEEEEEECCCC--CEE
Confidence            9999998  88999999888              89999998876         677888899999999999999  799


Q ss_pred             EEEcCCCcEEEEEcCCCCc
Q 019117          307 AIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       307 ~~~~~dg~i~iwd~~~~~~  325 (346)
                      ++++.||.|++|++.++..
T Consensus       331 ~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEEETTSEEEEEEECHHHH
T ss_pred             EEEcCCCeEEEEECccccc
Confidence            9999999999999987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.4e-36  Score=287.24  Aligned_cols=286  Identities=17%  Similarity=0.271  Sum_probs=228.2

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|.+.|.+++|+|    ++++||+++.|+ |++||+.+++.+..+..     |...|.+++|....++. ++
T Consensus       647 ~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~-~l  716 (1249)
T 3sfz_A          647 GEKLLDIKAHEDEVLCCAFSS----DDSYIATCSADKKVKIWDSATGKLVHTYDE-----HSEQVNCCHFTNKSNHL-LL  716 (1249)
T ss_dssp             CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSSSCC-EE
T ss_pred             CCEEEEeccCCCCEEEEEEec----CCCEEEEEeCCCeEEEEECCCCceEEEEcC-----CCCcEEEEEEecCCCce-EE
Confidence            456677889999999999999    789999999988 99999999988777764     77889888887433556 89


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-----------
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-----------  170 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------  170 (346)
                      ++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.||+|++||+.+++....+...           
T Consensus       717 ~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  795 (1249)
T 3sfz_A          717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE  795 (1249)
T ss_dssp             EEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------
T ss_pred             EEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccc
Confidence            9999999999999999999999999999999999999 8899999999999999999877665544210           


Q ss_pred             -----------------------------------------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117          171 -----------------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       171 -----------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                                                               .+|...|.+++|+| ++.++++++.|+.|++||+.+   
T Consensus       796 ~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~---  871 (1249)
T 3sfz_A          796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS---  871 (1249)
T ss_dssp             CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTT---
T ss_pred             cccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---
Confidence                                                     14667788888888 788888888888888888877   


Q ss_pred             eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC-------------
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP-------------  274 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~-------------  274 (346)
                                          ...+..+..|...|.++.|+  ++++++++.|+.|++|++.......             
T Consensus       872 --------------------~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  931 (1249)
T 3sfz_A          872 --------------------RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQ  931 (1249)
T ss_dssp             --------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEE
T ss_pred             --------------------CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEc
Confidence                                33445566677777777776  5677777777777777643210000             


Q ss_pred             ---------------------------------------------------------CCccccccccccCCCcCeeEEEE
Q 019117          275 ---------------------------------------------------------GEGTADILQKYPVPECDIWFIKF  297 (346)
Q Consensus       275 ---------------------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~  297 (346)
                                                                               ..........+.+|...|.+++|
T Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~ 1011 (1249)
T 3sfz_A          932 ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011 (1249)
T ss_dssp             TTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEE
T ss_pred             CCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEE
Confidence                                                                     00011244556678899999999


Q ss_pred             eecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          298 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       298 s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      +|++  .+|++++.||.|++||+.+++......+...+.++.|+|+++
T Consensus      1012 s~dg--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A         1012 TADG--KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp             CSSS--SCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE
T ss_pred             CCCC--CEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence            9999  789999999999999999998776666777789999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.1e-36  Score=251.59  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=196.5

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI  106 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  106 (346)
                      .+.+|...|.+++|+|.   ++.+|++++.|+ |++||+.. .....+..+  ..+...+.+++|+  |+++ +|++++.
T Consensus       113 ~~~~h~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~--~~~~~~v~~~~~~--~~~~-~l~~~~~  183 (383)
T 3ei3_B          113 QGMGPGDAITGMKFNQF---NTNQLFVSSIRGATTLRDFSG-SVIQVFAKT--DSWDYWYCCVDVS--VSRQ-MLATGDS  183 (383)
T ss_dssp             CCCSTTCBEEEEEEETT---EEEEEEEEETTTEEEEEETTS-CEEEEEECC--CCSSCCEEEEEEE--TTTT-EEEEEET
T ss_pred             ecCCcCCceeEEEeCCC---CCCEEEEEeCCCEEEEEECCC-CceEEEecc--CCCCCCeEEEEEC--CCCC-EEEEECC
Confidence            34579999999999982   358999999988 99999874 444444432  2245778888887  8898 9999999


Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCC----CeeEEEecccCCCCcceEEEE
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQT----GICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      |+.|++||+ +++.+..+.+|...|.+++|+| ++. +|++++.|+.|++||+++    +..+..+.    |...|.+++
T Consensus       184 d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~  257 (383)
T 3ei3_B          184 TGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAY  257 (383)
T ss_dssp             TSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEE
T ss_pred             CCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----CCCceEEEE
Confidence            999999998 5778888999999999999999 666 999999999999999997    56666664    899999999


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEEEee
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~  258 (346)
                      |+|.++.+|++++.|+.|++||+++............    ....  ...++. ...+ ...+..+.|+  +++  +++.
T Consensus       258 ~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~~p~~~~~~~~~s~dg~~--s~s~  328 (383)
T 3ei3_B          258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH----RQFQ--HLTPIK-ATWHPMYDLIVAGRYPDDQL--LLND  328 (383)
T ss_dssp             ECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB----CCCT--TSCCCC-CEECSSSSEEEEECBCCTTT--CTTC
T ss_pred             EcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc----cccc--cccceE-EeccCCCCceEEEecCCccc--ccCC
Confidence            9985778899999999999999988443211110000    0000  000011 0111 2345556665  444  8889


Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      |+.|++||+.+++         .+..+.+  +...+..++|+|++  .+|++++ ||.|++||+++
T Consensus       329 d~~i~iwd~~~~~---------~~~~l~~~~~~~~~~~~~~s~~g--~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          329 KRTIDIYDANSGG---------LVHQLRDPNAAGIISLNKFSPTG--DVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEEETTTCC---------EEEEECBTTBCSCCCEEEECTTS--SEEEEEE-TTEEEEEECC-
T ss_pred             CCeEEEEecCCCc---------eeeeecCCCCCceEEEEEEecCc--cEEEEec-CCcEEEEecCC
Confidence            9999999999876         5666665  45678888999999  7899997 99999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-36  Score=256.71  Aligned_cols=281  Identities=10%  Similarity=0.064  Sum_probs=206.0

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec---cCceeeeEeee-----ecCC--CccceEEEEEEEcCCCCc
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL---EGGVIAALQSY-----VDED--KEESFYTVSWACNVDGIP   99 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~---~~~~~~~~~~~-----~~~~--~~~~v~~~~~~~~~~~~~   99 (346)
                      +|..+|++++|+|    ++.+|++++.|+ |++||+.   .++.......+     ....  +...+.++.+.+++++. 
T Consensus       109 ~h~~~v~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-  183 (437)
T 3gre_A          109 DCSSTVTQITMIP----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-  183 (437)
T ss_dssp             ECSSCEEEEEECT----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-
T ss_pred             cCCCCEEEEEEeC----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-
Confidence            5999999999998    789999999998 9999995   55544433321     1111  55677778877888998 


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      +|++++.|+.|++||+.+++.+..+..  |...|.+++|+| ++.+|++|+.||.|++||+++++++..+..  .|...|
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v  260 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPI  260 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCce
Confidence            999999999999999999999999988  899999999999 899999999999999999999999888753  477899


Q ss_pred             EEEEecCC---CCcEEEEEecCCeEEEEEccccceeeeeceeecCCC-CCCCCccceeceEEEee--cccceEEEEec-C
Q 019117          178 LSVDFHPS---DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP-SKFPTKYVQFPVFIASV--HSNYVDCNRWL-G  250 (346)
Q Consensus       178 ~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~~~~-~  250 (346)
                      .+++|+|.   ++.+|++++.||.|++||+++.+............. ..+...........+.+  |...|.+++|+ +
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~  340 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND  340 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence            99966651   677999999999999999987543221110000000 00000000000011233  88889999999 6


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCCCCCcc----------------------------ccccccccCCCcCeeEEEEeecCC
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQSPGEGT----------------------------ADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                      ++|++++.|+.|++||+.+++.......                            .........|...|.+++|+++..
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            7999999999999999998763211100                            001112233889999999999933


Q ss_pred             cceEEEEcCCCcEEEEE
Q 019117          303 YNAAAIGNREGKIFVWE  319 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd  319 (346)
                      ..+|++|+.||.|+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            37999999999999995

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=275.41  Aligned_cols=259  Identities=20%  Similarity=0.303  Sum_probs=208.9

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ...+.+|.++|++++|+|    ++++|++|+.|+ |++|++..+  .....+.     .|...|.+++|+.+.++. +|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~----dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~-~l~   71 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-ILA   71 (753)
T ss_dssp             ------CCCCEEEECCCS----SSCCEEEEETTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCS-EEE
T ss_pred             eeecccCcceeEEEEECC----CCCeEEEEECCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCC-EEE
Confidence            346789999999999999    788999999888 999998743  3333333     378899999887433377 999


Q ss_pred             EeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCe--eEEEecccCCCCcc
Q 019117          103 AGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNE  176 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~  176 (346)
                      +|+.||.|++||+.+++  .+..+.+|...|.+++|+| +  +..+++|+.||.|++||++++.  ....+.   +|...
T Consensus        72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~---~~~~~  147 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAIG  147 (753)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE---CCSSC
T ss_pred             EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEee---cCCCc
Confidence            99999999999999887  6778888999999999999 6  8999999999999999998773  333444   69999


Q ss_pred             eEEEEecCC------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          177 VLSVDFHPS------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       177 v~~~~~~~~------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      |.+++|+|.            ++.++++|+.||.|++||++....                   .......+..|...|.
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-------------------~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWVR  208 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCEE
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-------------------cceeeeeecCCCCcEE
Confidence            999999984            478999999999999999987321                   1234567778999999


Q ss_pred             EEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          245 CNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       245 ~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +++|+     ++++++++.||.|++||+.+++...    ...+.....|...|++++|+|++  .+|++++.||.|++|+
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg--~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWK  282 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTT--CCEEEECSSSCEECCB
T ss_pred             EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCC--CEEEEEcCCCEEEEEe
Confidence            99998     4689999999999999998864211    11233445578899999999999  7899999999999999


Q ss_pred             cCCC
Q 019117          320 LQSS  323 (346)
Q Consensus       320 ~~~~  323 (346)
                      +.++
T Consensus       283 ~~~~  286 (753)
T 3jro_A          283 ENLE  286 (753)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            9853

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.4e-37  Score=250.83  Aligned_cols=234  Identities=19%  Similarity=0.251  Sum_probs=184.2

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEe
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN  157 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd  157 (346)
                      .|...|.+++|+  |+|+ +|++|+.|++|++||+.+++  .+..+.+|.+.|.+++|+|. ++++|++|+.|++|++||
T Consensus        11 ~H~~~V~~v~~s--~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           11 SHEDMIHDAQMD--YYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ---CCEEEEEEC--GGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccCeEEEeeEc--CCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            488889888887  8898 99999999999999998764  46788999999999999862 478999999999999999


Q ss_pred             cCCCe--eEEEecccCCCCcceEEEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117          158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  234 (346)
Q Consensus       158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
                      +++++  .+..+.   +|...|++++|+|++ +.+|++++.|+.|++||++.....                    ....
T Consensus        88 ~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--------------------~~~~  144 (316)
T 3bg1_A           88 EENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--------------------EVKK  144 (316)
T ss_dssp             CSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--------------------EECC
T ss_pred             CCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--------------------ceee
Confidence            98873  555665   799999999999932 789999999999999999863110                    0112


Q ss_pred             EEeecccceEEEEecC-------------------CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEE
Q 019117          235 IASVHSNYVDCNRWLG-------------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  295 (346)
Q Consensus       235 ~~~~~~~~i~~~~~~~-------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  295 (346)
                      .+..|...|.++.|++                   ++|++++.|++|++||++...      ....+..+.+|...|.++
T Consensus       145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEEEE
T ss_pred             eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceEEE
Confidence            2345666777777762                   589999999999999997542      112566788899999999


Q ss_pred             EEeecCC--cceEEEEcCCCcEEEEEcCCCC-----cceeeeeeeeEEEEEecCCCCC
Q 019117          296 KFSCDFH--YNAAAIGNREGKIFVWELQSSP-----PVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       296 ~~s~~~~--~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +|+|++.  ..+|++++.|+.|++|++.+..     ......+...+.+++|+|+|++
T Consensus       219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI  276 (316)
T ss_dssp             ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred             EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence            9999861  2589999999999999998732     1223345567999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-36  Score=255.04  Aligned_cols=263  Identities=14%  Similarity=0.133  Sum_probs=191.6

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +++...+.+|...|++++|+|    ++++|++++.|+ |++||+.++........+  ..|...|.+++|+  |+++ +|
T Consensus        45 ~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~~-~l  115 (377)
T 3dwl_C           45 WKHARTFSDHDKIVTCVDWAP----KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWS--PNED-KF  115 (377)
T ss_dssp             EEECCCBCCCSSCEEEEEECT----TTCCEEEEETTSSEEEC------CCCCEEEC--CCCSSCEEEEECC--TTSS-CC
T ss_pred             eEEEEEEecCCceEEEEEEeC----CCCEEEEEeCCCeEEEEEcCCCCceeeeeEe--cccCCceEEEEEC--CCCC-EE
Confidence            367778899999999999999    789999999988 999999887622222211  2377888888877  8888 99


Q ss_pred             EEeecCCeEEEEEccCcc---eeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-----------------
Q 019117          102 VAGGINGIIRVIDVSNEK---LHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----------------  160 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------  160 (346)
                      ++++.|+.|++||+.+++   ....+.. |...|.+++|+| ++.+|++++.|+.|++||++.                 
T Consensus       116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  194 (377)
T 3dwl_C          116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP  194 (377)
T ss_dssp             EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred             EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc
Confidence            999999999999999887   4677777 999999999999 889999999999999999853                 


Q ss_pred             -CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117          161 -GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  239 (346)
Q Consensus       161 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
                       ++++..+    +|...|.+++|+| ++.+|++++.|+.|++||++.....                   ...+..+..|
T Consensus       195 ~~~~~~~~----~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~-------------------~~~~~~~~~~  250 (377)
T 3dwl_C          195 FNTVCAEY----PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQP-------------------PRALITVKLS  250 (377)
T ss_dssp             EEEEEECC----CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSC-------------------EEECCCEECS
T ss_pred             hhhhhhcc----cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCc-------------------ceeeEeecCC
Confidence             3344444    5999999999999 8899999999999999999983210                   1125567789


Q ss_pred             ccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC---C-----cc-------------c-----------------
Q 019117          240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG---E-----GT-------------A-----------------  279 (346)
Q Consensus       240 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~---~-----~~-------------~-----------------  279 (346)
                      ...|.+++|+  +++|++++.++.+ +|+.........   .     ..             .                 
T Consensus       251 ~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (377)
T 3dwl_C          251 QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDL  329 (377)
T ss_dssp             SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------------
T ss_pred             CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhh
Confidence            9999999998  6778777766655 776653220000   0     00             0                 


Q ss_pred             -----cccccccCCCcCeeEEEEeecCCc--ceEEEEcCCCcEEEEEc
Q 019117          280 -----DILQKYPVPECDIWFIKFSCDFHY--NAAAIGNREGKIFVWEL  320 (346)
Q Consensus       280 -----~~~~~~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~iwd~  320 (346)
                           ........|...|+++++.+....  ..|++|+.||.|++||+
T Consensus       330 ~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          330 KGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                 000112238899999997765421  16999999999999986

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=238.36  Aligned_cols=261  Identities=20%  Similarity=0.273  Sum_probs=203.7

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV  115 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  115 (346)
                      .++|+||+    + ++||+|.++.|+|||..+++.++.+..   ..|...|.+++|.  |+++ +|++|+.||.|++||+
T Consensus        28 ~~~l~WS~----~-~~lAvg~D~tV~iWd~~tg~~~~~~~~---~~~~~~V~~v~~~--~~~~-~l~sgs~Dg~v~iw~~   96 (318)
T 4ggc_A           28 LNLVDWSS----G-NVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDV   96 (318)
T ss_dssp             CBCEEECT----T-SEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEEC--TTSS-EEEEEETTSEEEEEET
T ss_pred             ceEEEECC----C-CEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCeEEEEEEC--CCCC-EEEEEECCCcEEEeec
Confidence            56799998    3 488888766699999999988777653   3467788888877  9998 9999999999999999


Q ss_pred             cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      .+++.+..+.+|...+.++.+.   +..+++++.++.+++|+..... .+..+.   +|...+..+.+++ ++.++++++
T Consensus        97 ~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~s~~  169 (318)
T 4ggc_A           97 QQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGG  169 (318)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEE
T ss_pred             CCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEc---CccCceEEEEEcC-CCCEEEEEe
Confidence            9999999999999998887765   4799999999999999988654 445555   7999999999998 889999999


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCC----------CC---------CCc------cceeceEEEeecccceEEEEec
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPS----------KF---------PTK------YVQFPVFIASVHSNYVDCNRWL  249 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------~~---------~~~------~~~~~~~~~~~~~~~i~~~~~~  249 (346)
                      .|+.|++||+++.+..............          ..         ...      ...........+...+..+.|.
T Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~  249 (318)
T 4ggc_A          170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS  249 (318)
T ss_dssp             TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEE
T ss_pred             cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeec
Confidence            9999999999874432111111110000          00         000      0011123344566778888887


Q ss_pred             --CCEEEEEe--ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          250 --GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       250 --~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                        ++.+++++  .|+.|++||+++++         ++..+.+|.+.|++++|+|++  .+|++|+.||.|+|||+.+.+|
T Consensus       250 ~~~~~~~~~sg~~d~~i~iwd~~~~~---------~~~~l~gH~~~V~~l~~spdg--~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          250 PHYKELISGHGFAQNQLVIWKYPTMA---------KVAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             TTTTEEEEEECTTTCCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSCCCC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCCCCC
Confidence              66666544  79999999999877         788899999999999999999  7999999999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.4e-35  Score=269.13  Aligned_cols=255  Identities=17%  Similarity=0.236  Sum_probs=218.2

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+....+.+|..+|.+++|+|    ++++||+++.++ |++||+.+++.+..+..     |...|.+++|+  |+++ +|
T Consensus        45 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~s--~~~~-~l  112 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-----HPDYIRSIAVH--PTKP-YV  112 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC--SSSS-EE
T ss_pred             CceEEEEecCCCcEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCcEEEEEec-----CCCCEEEEEEe--CCCC-EE
Confidence            456677889999999999999    789999999988 99999999888777754     67788888877  8998 99


Q ss_pred             EEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          102 VAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      ++++.||.|++||+.++ .....+.+|...|.+++|+|.++..|++++.||.|++||+.+++....+..  .+...+.++
T Consensus       113 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~  190 (814)
T 3mkq_A          113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYV  190 (814)
T ss_dssp             EEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEE
T ss_pred             EEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec--CCCCCEEEE
Confidence            99999999999999887 677788899999999999996678999999999999999998887777762  345889999


Q ss_pred             EecCC-CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          181 DFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       181 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +|+|. ++.++++++.||.|++||++.                       ...+..+..|...|.++.|+  ++++++++
T Consensus       191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDDLTIKIWDYQT-----------------------KSCVATLEGHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             EECCSTTCCEEEEECTTSEEEEEETTT-----------------------TEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            99972 567899999999999999987                       34566778899999999998  77999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      .||.|++||+.+++         .+..+..+...+.+++|+|++. ..+++++.++.+.+|++..+.
T Consensus       248 ~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          248 EDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGR-KNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             TTSCEEEEETTTCS---------EEEEECCSSSSEEEEEECTTCG-GGEEEEEETTEEEEEECSCCS
T ss_pred             CCCeEEEEECCCCc---------EEEEeecCCCcEEEEEEccCCC-ceEEEEEeCCCEEEEEcCCCC
Confidence            99999999999876         6777888888999999999985 333444456778899987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.4e-35  Score=260.96  Aligned_cols=258  Identities=16%  Similarity=0.189  Sum_probs=219.8

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccC----ceeeeEeeeecCCCccc-eEEEEEEEcC--CCCcEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG----GVIAALQSYVDEDKEES-FYTVSWACNV--DGIPFLV  102 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~----~~~~~~~~~~~~~~~~~-v~~~~~~~~~--~~~~~l~  102 (346)
                      ..|.+.|.+++|+|    ++++||+++++.|.+|++.++    +....+.     .|... |.+++|+  |  +++ +|+
T Consensus        15 ~~~~~~v~~~~~sp----dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-----~h~~~~v~~~~~s--p~~~~~-~l~   82 (615)
T 1pgu_A           15 STQRNFTTHLSYDP----TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----GHGSSVVTTVKFS--PIKGSQ-YLC   82 (615)
T ss_dssp             CCCTTCCCCCEEET----TTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----TTTTSCEEEEEEC--SSTTCC-EEE
T ss_pred             CCccCceeEEEECC----CCCEEEEecCCeEEEEECCCCCCccccceEEe-----cCCCceEEEEEEC--cCCCCC-EEE
Confidence            46889999999999    789999999666999999987    6655554     37778 9888887  8  898 999


Q ss_pred             EeecCCeEEEEEccCc--------ceeeeeccCCCceEEEEEeCCCCceEEEeeCC----CCEEEEecCCCeeEEEeccc
Q 019117          103 AGGINGIIRVIDVSNE--------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~  170 (346)
                      +++.||.|++||+.++        +....+..|...|.+++|+| ++.+|++++.+    +.|.+||  .++.+..+.  
T Consensus        83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--  157 (615)
T 1pgu_A           83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--  157 (615)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECC--
T ss_pred             EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeee--
Confidence            9999999999999754        67778888999999999999 88999999987    6888888  567777777  


Q ss_pred             CCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc---ceEEE
Q 019117          171 GGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCN  246 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~  246 (346)
                       +|...|.+++|+| ++. ++++++.|+.|++||+..                       ...+..+..|..   .|.++
T Consensus       158 -~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~-----------------------~~~~~~~~~~~~~~~~v~~~  212 (615)
T 1pgu_A          158 -GHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPP-----------------------FKFSASDRTHHKQGSFVRDV  212 (615)
T ss_dssp             -SCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTT-----------------------BEEEEEECSSSCTTCCEEEE
T ss_pred             -cCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCC-----------------------cceeeeecccCCCCceEEEE
Confidence             7999999999999 554 899999999999999987                       345667778888   99999


Q ss_pred             Eec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc-c---CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          247 RWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-P---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       247 ~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +|+   +++|++++.|+.|++||+.+++         .+..+ .   .|...|.+++|+ ++  .+|++++.||.|++||
T Consensus       213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~d~~i~~wd  280 (615)
T 1pgu_A          213 EFSPDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL-DS--QKFATVGADATIRVWD  280 (615)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES-SS--SEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc-CC--CEEEEEcCCCcEEEEE
Confidence            998   5699999999999999998876         55666 4   788999999999 87  7999999999999999


Q ss_pred             cCCCCcceeeeee-----eeEEEEEec
Q 019117          320 LQSSPPVLIARLI-----CFSLHVKYN  341 (346)
Q Consensus       320 ~~~~~~~~~~~~~-----~~~~~~~~s  341 (346)
                      +.+++.+..+...     ..+.++.|+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          281 VTTSKCVQKWTLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             TTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             CCCCcEEEEEcCCCCcccCceeEEEeC
Confidence            9998776665554     345666664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-35  Score=250.92  Aligned_cols=260  Identities=19%  Similarity=0.293  Sum_probs=215.9

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC----------CccceEEEEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED----------KEESFYTVSW   91 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~   91 (346)
                      .+....+.+|...|.+++|+|    ++.+|++++.++ |++||+.+++....+.......          ....+.+++|
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNK----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW  214 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECT----TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE
T ss_pred             CCeeeeccCCCccEEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE
Confidence            456667789999999999999    788999999888 9999998888777665422110          0001666666


Q ss_pred             EEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117           92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG  171 (346)
Q Consensus        92 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  171 (346)
                      .  +++  .+++++.+|.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.   
T Consensus       215 ~--~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---  286 (425)
T 1r5m_A          215 V--DDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFY---  286 (425)
T ss_dssp             E--ETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEEC---
T ss_pred             c--CCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEec---
Confidence            5  665  688999999999999999999999999999999999999 88899999999999999999999888887   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      .|...|.+++|+| ++ ++++++.|+.|++||++.                       ...+..+..|...|.++.|+  
T Consensus       287 ~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          287 GHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ-----------------------NTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             CCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT-----------------------TEEEEEEECTTCCEEEEEECTT
T ss_pred             CCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC-----------------------CcEeEecccCCccEEEEEEcCC
Confidence            7999999999999 66 999999999999999987                       34566777899999999998  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCC-----------CccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPG-----------EGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      +++|++++.||.|++||+.+.+....           ......+..+..|..  .|.+++|+|++  .+|++++.||.|+
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~  419 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG--NKISVAYSLQEGS  419 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS--SEEEEEESSSCCE
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC--ceEEEEecCceEE
Confidence            78999999999999999987641000           001115667777866  99999999999  6899999999999


Q ss_pred             EEEcC
Q 019117          317 VWELQ  321 (346)
Q Consensus       317 iwd~~  321 (346)
                      +||++
T Consensus       420 iw~~~  424 (425)
T 1r5m_A          420 VVAIP  424 (425)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-35  Score=248.33  Aligned_cols=255  Identities=15%  Similarity=0.175  Sum_probs=205.5

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-------eeeeEeeeecCCCccceEEEEEEEcC
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      +....+.+|.+.|++++|+|.   ++.+||+++.|+ |++|++.++.       .+..+.     .|...|.+++|.  |
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~---~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--p  141 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-----GHTKRVGIVAWH--P  141 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTT---CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-----CCSSCEEEEEEC--S
T ss_pred             CCCceEecCCCCEEEEEeCCC---CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-----CCCCeEEEEEEC--c
Confidence            344567899999999999982   468999999998 9999998873       344444     377889888887  8


Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe-cccCC
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-AGAGG  172 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~  172 (346)
                      ++..+|++++.||.|++||+.+++.+..+  ..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+ .   .
T Consensus       142 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~  217 (402)
T 2aq5_A          142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDR---P  217 (402)
T ss_dssp             SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEEC---S
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeecc---C
Confidence            87449999999999999999999999998  88999999999999 8999999999999999999999998888 5   5


Q ss_pred             CCcc-eEEEEecCCCCcEEEEE---ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEE
Q 019117          173 HRNE-VLSVDFHPSDIYRIASC---GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNR  247 (346)
Q Consensus       173 ~~~~-v~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~  247 (346)
                      |.+. +.+++|+| ++.+++++   +.|+.|++||++....                      ++... ..|...+.++.
T Consensus       218 ~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~----------------------~~~~~~~~~~~~v~~~~  274 (402)
T 2aq5_A          218 HEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEE----------------------PLSLQELDTSSGVLLPF  274 (402)
T ss_dssp             SCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSS----------------------CSEEEECCCCSSCEEEE
T ss_pred             CCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccC----------------------CceEEeccCCCceeEEE
Confidence            7665 89999999 88999998   7899999999988321                      11122 24677799999


Q ss_pred             ec--CCEEE-EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          248 WL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       248 ~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      |+  +++|+ +++.|+.|++||+.+++.     ....+..+. +...|.+++|+|++  .++++  .++.+++|++.+++
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~-----~~~~l~~~~-~~~~v~~~~~sp~~--~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAP-----FLHYLSMFS-SKESQRGMGYMPKR--GLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTT-----CEEEEEEEC-CSSCCSEEEECCGG--GSCGG--GTEEEEEEEEETTE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCc-----ceEeecccc-cCCcccceEEeccc--cccee--cceeEEEEEcCCCc
Confidence            98  67775 555799999999998752     011222233 45899999999998  56653  56799999999865


Q ss_pred             c
Q 019117          325 P  325 (346)
Q Consensus       325 ~  325 (346)
                      .
T Consensus       345 ~  345 (402)
T 2aq5_A          345 C  345 (402)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=250.17  Aligned_cols=267  Identities=9%  Similarity=-0.012  Sum_probs=198.8

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee-------eE----------------e--eeecCCCc
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-------AL----------------Q--SYVDEDKE   83 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~-------~~----------------~--~~~~~~~~   83 (346)
                      +.-...|.+|+|+|    ||+++|+++.|+ |+  |...++.+.       .+                .  ......+.
T Consensus        12 ~~~~~~v~sv~~Sp----DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~   85 (588)
T 2j04_A           12 KEFEDWKNNLTWAR----DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPV   85 (588)
T ss_dssp             CCCSSSSCCEEECT----TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCS
T ss_pred             hHhhccEEEEEECC----CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCC
Confidence            34567899999999    889999999998 65  544333220       00                0  00011245


Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC-----ceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD-----SINEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      ..|.+++|+  |+|+ +||+++.||.|++||.+.  .+..+. |..     .|.+++|+| ++++|++|+.||+|++||+
T Consensus        86 ~~V~~vawS--PdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           86 CYPRVCKPS--PIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             CCEEEEEEC--SSSS-CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEEC
T ss_pred             CcEEEEEEC--CCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEEC
Confidence            668777776  9999 999999999999999544  566666 665     599999999 9999999999999999999


Q ss_pred             CCCee-------EEEecc-cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccce
Q 019117          159 QTGIC-------ILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  230 (346)
Q Consensus       159 ~~~~~-------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
                      .+++.       +..+.. ..+|...|.+++|+| ++  +++++.|++|++||+.....                    .
T Consensus       159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~--------------------~  215 (588)
T 2j04_A          159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSH--------------------Q  215 (588)
T ss_dssp             CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSS--------------------C
T ss_pred             CCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcc--------------------c
Confidence            98752       455521 126889999999999 77  88889999999999987221                    1


Q ss_pred             eceEEE-eecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE--eecCCcceEE
Q 019117          231 FPVFIA-SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF--SCDFHYNAAA  307 (346)
Q Consensus       231 ~~~~~~-~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~~~l~  307 (346)
                      .....+ ..|...|.+++|+++.|++++ +++|++||+.+++         ......+|...|..++|  +|++  ..|+
T Consensus       216 ~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---------~~~~~~gh~~~V~~va~~~s~d~--~~La  283 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---------ISSLKTGSLENFHIIPLNHEKES--TILL  283 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---------EEEEECSCCSCCCEEEETTCSSC--EEEE
T ss_pred             cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---------EEEEEcCCCceEEEEEeeeCCCC--CEEE
Confidence            122345 368889999999988999987 6999999999875         21222278999999999  9999  7899


Q ss_pred             EEcCCCcEEEEEcCC------C-----------------CcceeeeeeeeEEEEEecCCCC
Q 019117          308 IGNREGKIFVWELQS------S-----------------PPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       308 ~~~~dg~i~iwd~~~------~-----------------~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      ++++||. ++|....      +                 .....+.....+.+++|||||+
T Consensus       284 ~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~  343 (588)
T 2j04_A          284 MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY  343 (588)
T ss_dssp             ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred             EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence            9999999 8888621      1                 1112222233478899999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-35  Score=244.59  Aligned_cols=229  Identities=17%  Similarity=0.196  Sum_probs=193.6

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc--CcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEe
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWN  157 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd  157 (346)
                      |...|.+++|+  |+++ +|++|+.||.|++||+.  +++.+..+.+|...|.+++|++ +  +.+|++++.||.|++||
T Consensus        10 h~~~v~~~~~s--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A           10 HNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             CCCCEEEEEEC--SSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEE
T ss_pred             CcccEEEEEEc--CCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEE
Confidence            78889888887  8998 99999999999999998  5677788999999999999987 5  89999999999999999


Q ss_pred             cCCCe--eEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                      +.+++  .+..+.   .|...|.+++|+| +  +.++++++.|+.|++||++...                     ....
T Consensus        86 ~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~---------------------~~~~  140 (379)
T 3jrp_A           86 EENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENG---------------------TTSP  140 (379)
T ss_dssp             EETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTS---------------------CCCE
T ss_pred             cCCCceeEeeeec---CCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCC---------------------ceee
Confidence            99887  566666   6999999999999 6  8899999999999999998732                     1234


Q ss_pred             EEEeecccceEEEEec---------------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117          234 FIASVHSNYVDCNRWL---------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  298 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  298 (346)
                      ..+..|...|.++.|+               +.++++++.|+.|++||+++.+.     .......+..|...|.+++|+
T Consensus       141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~~~~~s  215 (379)
T 3jrp_A          141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS  215 (379)
T ss_dssp             EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred             EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEeEEEEC
Confidence            4567899999999997               36899999999999999987642     122456777899999999999


Q ss_pred             ec---CCcceEEEEcCCCcEEEEEcCCCCcceee------eeeeeEEEEEecCCCCC
Q 019117          299 CD---FHYNAAAIGNREGKIFVWELQSSPPVLIA------RLICFSLHVKYNPQSVY  346 (346)
Q Consensus       299 ~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~spdg~~  346 (346)
                      |+   +  .+|++++.||.|++||+.+++.....      .....+.+++|+|+|++
T Consensus       216 p~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  270 (379)
T 3jrp_A          216 PTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  270 (379)
T ss_dssp             CCCSSS--EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             CCCCCC--CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE
Confidence            99   6  79999999999999999987532211      14456899999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-34  Score=241.68  Aligned_cols=254  Identities=10%  Similarity=0.054  Sum_probs=185.3

Q ss_pred             eeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      +...+.+|.+.|++++|+|    ++++||+|+.+++++|+..++.......       ...+..+++.  ++++.+++++
T Consensus        11 ~~~~~~~h~~~V~~v~fs~----dg~~la~g~~~~~~iw~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~   77 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQ----DQSCLILSTLKSFEIYNVHPVAHIMSQE-------MRHLSKVRML--HRTNYVAFVT   77 (355)
T ss_dssp             --------CCCCCEEEECT----TSSEEEEECSSEEEEEEETTEEEEEEEE-------CSCCCEEEEC--TTSSEEEEEC
T ss_pred             CccccccCCCceEEEEECC----CCCEEEEEcCCEEEEEecCCcceeeeee-------cCCeEEEEEc--CCCCEEEEEE
Confidence            3445688999999999999    7899999999999999987665443322       1135556666  5565244678


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEec
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      +.|+.|++||+.+++.+..+. +...|.+++|++ +  .++++. |+.|++||+.++ +.+..+.   .   ....++++
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~-~--~~~~~~-~~~i~i~d~~~~~~~~~~~~---~---~~~~~~~s  146 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSR-E--FIVVSY-GDVISVFKFGNPWKRITDDI---R---FGGVCEFS  146 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECS-S--EEEEEE-TTEEEEEESSTTCCBSSCCE---E---EEEEEEEE
T ss_pred             CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcC-C--EEEEEE-cCEEEEEECCCCceeeEEec---c---CCceEEEE
Confidence            888999999999999988887 677999999987 3  344443 789999999988 6666665   2   44456666


Q ss_pred             CCCCcEEEE--EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec-eEEEeecccceEEEEec--CCEEEEEee
Q 019117          184 PSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP-VFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       184 ~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      +   .+++.  |+.||.|++||++..........        ........+ +..+..|...|.+++|+  +++|++++.
T Consensus       147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~  215 (355)
T 3vu4_A          147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQ--------GVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ  215 (355)
T ss_dssp             T---TEEEEEESSCTTCEEEEECCC--------------------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             c---cEEEEeCCCcCcEEEEEECCCCCccccccc--------cccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC
Confidence            5   34444  68899999999987331100000        000000123 66788999999999998  889999999


Q ss_pred             cCe-EEEEcCCCCCCCCCCcccccccccc-C-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          259 DNE-IVLWEPKMKEQSPGEGTADILQKYP-V-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       259 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      |++ |++||+++++         .+..+. + |...|.+++|+|++  .+|++++.|+.|++||+..+.
T Consensus       216 d~~~v~iwd~~~~~---------~~~~~~~g~h~~~v~~~~~s~~~--~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          216 DGTIIRVFKTEDGV---------LVREFRRGLDRADVVDMKWSTDG--SKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TCSEEEEEETTTCC---------EEEEEECTTCCSCEEEEEECTTS--CEEEEEETTCEEEEEESSCCS
T ss_pred             CCCEEEEEECCCCc---------EEEEEEcCCCCCcEEEEEECCCC--CEEEEEECCCEEEEEEccCCC
Confidence            998 9999999876         667776 4 88999999999999  799999999999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.6e-35  Score=245.64  Aligned_cols=305  Identities=15%  Similarity=0.128  Sum_probs=193.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce-------eeeEeeeecCCCccceEEEEEE--------------
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-------IAALQSYVDEDKEESFYTVSWA--------------   92 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~--------------   92 (346)
                      ...+++.|....+....+++.|.+++|.+|+......       ...+...   .+...+..+.|.              
T Consensus        16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI---QTGLPTLHLSFSSSCSYSENLHDGDG   92 (393)
T ss_dssp             CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE---ECSSCEEEEEECTTCEEECC------
T ss_pred             CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE---ecCCCeeeEeecCCccccccccCCCc
Confidence            3456778865444455788888877799998653221       1111111   122233333322              


Q ss_pred             ----EcCCCCcEEEEeecCCeEEEEEccCccee-----eeeccCCCceEEEEEeC-------CCCceEEEeeCCCCEEEE
Q 019117           93 ----CNVDGIPFLVAGGINGIIRVIDVSNEKLH-----KSFVGHGDSINEIRTQP-------LKPSLVVSASKDESVRLW  156 (346)
Q Consensus        93 ----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~-------~~~~~l~s~~~d~~i~iw  156 (346)
                          +.+++. +|++++.|++|+|||.++++..     ..+.+|.+.|++++|+|       .++++|++|+.|++|+||
T Consensus        93 ~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           93 NVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             ----CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             ceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence                123444 8999999999999999887543     45678999999999987       256899999999999999


Q ss_pred             ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCC--CccceeceE
Q 019117          157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP--TKYVQFPVF  234 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  234 (346)
                      |++++.++..+.   .|...|.+++|+|++..+|++++.|++|++||++..+.................  .........
T Consensus       172 d~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          172 RLTDEGPILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             EEETTEEEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             ECCCCceeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            998888777776   689999999999955578999999999999999885432221111000000000  000011122


Q ss_pred             EEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccc----------cccccccCCCcCeeEEEEeecC
Q 019117          235 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTA----------DILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       235 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                      ....|...+.++.|.   ++.+++++.|+++++||+...+........          ........+ .......|+|..
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  327 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF-PSLLGACPHPRY  327 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-CCSSCCEECSSC
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-CcceeEEEccCC
Confidence            345688889999986   789999999999999999876532111000          000111111 122233455543


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeEEEEEecCCCCC
Q 019117          302 HYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~spdg~~  346 (346)
                      ...++++|+.||.|++||+.+++.... ..+...+.+++|||||++
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~  373 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH  373 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence            335788899999999999999876553 445567999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.1e-34  Score=253.48  Aligned_cols=267  Identities=15%  Similarity=0.121  Sum_probs=219.4

Q ss_pred             eeeeecccCCCc-eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--------ceeeeEeeeecCCCccceEEEEEEE
Q 019117           24 RVTNKLQEGKRP-LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--------GVIAALQSYVDEDKEESFYTVSWAC   93 (346)
Q Consensus        24 ~~~~~~~~h~~~-v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~   93 (346)
                      +....+.+|.+. |++++|+|.+  ++++||+++.|+ |++||+.++        .....+.     .+...|.+++|+ 
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~--~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s-  125 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-----VLAGPISDISWD-  125 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-----CCSSCEEEEEEC-
T ss_pred             ccceEEecCCCceEEEEEECcCC--CCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-----cccccEEEEEEe-
Confidence            566778999999 9999999821  468999999988 999999755        3333333     267788888777 


Q ss_pred             cCCCCcEEEEeecC----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           94 NVDGIPFLVAGGIN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        94 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                       |+++ +|++++.+    +.|.+||  .++.+..+.+|...|.+++|+| ++. .+++++.|+.|++||+.+++.+..+.
T Consensus       126 -~~~~-~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~  200 (615)
T 1pgu_A          126 -FEGR-RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDR  200 (615)
T ss_dssp             -TTSS-EEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             -CCCC-EEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence             9999 99999887    6888887  6778888999999999999999 555 89999999999999999999999988


Q ss_pred             ccCCCCc---ceEEEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-e---ecc
Q 019117          169 GAGGHRN---EVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-S---VHS  240 (346)
Q Consensus       169 ~~~~~~~---~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~  240 (346)
                         +|..   .|.+++|+| + +.++++++.|+.|++||+++                       ...+..+ .   .|.
T Consensus       201 ---~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~~~~~~~~~~~~~  253 (615)
T 1pgu_A          201 ---THHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS-----------------------GEFLKYIEDDQEPVQ  253 (615)
T ss_dssp             ---SSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-----------------------CCEEEECCBTTBCCC
T ss_pred             ---ccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-----------------------CCEeEEecccccccC
Confidence               7888   999999999 7 99999999999999999987                       3344555 4   789


Q ss_pred             cceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117          241 NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKI  315 (346)
Q Consensus       241 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~~l~~~~~dg~i  315 (346)
                      ..|.++.|+ +++|++++.|+.|++||+.+++         .+..+..+    ...+.++.|+ ++  .++++++.||.|
T Consensus       254 ~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~g~i  321 (615)
T 1pgu_A          254 GGIFALSWLDSQKFATVGADATIRVWDVTTSK---------CVQKWTLDKQQLGNQQVGVVAT-GN--GRIISLSLDGTL  321 (615)
T ss_dssp             SCEEEEEESSSSEEEEEETTSEEEEEETTTTE---------EEEEEECCTTCGGGCEEEEEEE-ET--TEEEEEETTSCE
T ss_pred             CceEEEEEcCCCEEEEEcCCCcEEEEECCCCc---------EEEEEcCCCCcccCceeEEEeC-CC--CeEEEEECCCCE
Confidence            999999995 8899999999999999999876         44455444    4677888886 56  689999999999


Q ss_pred             EEEEcCCCCcceee-eeeeeEEEEEecCC
Q 019117          316 FVWELQSSPPVLIA-RLICFSLHVKYNPQ  343 (346)
Q Consensus       316 ~iwd~~~~~~~~~~-~~~~~~~~~~~spd  343 (346)
                      ++||+.+++++... .+...+.+++| |+
T Consensus       322 ~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          322 NFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             EEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            99999987655433 23345777877 65

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-34  Score=237.36  Aligned_cols=244  Identities=9%  Similarity=0.062  Sum_probs=180.8

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc---------C
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS---------N  117 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~  117 (346)
                      ++.+|++|+.|+ |++||+.+++.+..+..       ..+..+.+.  |+    +++++.|++|++|+..         +
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-------~~v~~~~~~--~~----~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITT-------PNPRTGGEH--PA----IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEE-------ECCCTTCCC--CS----EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEec-------CCceeeeeC--Cc----eEEecCCCeEEEEEccCceEEeecCC
Confidence            568999999999 99999999888776651       233334443  44    8899999999999765         4


Q ss_pred             cceeeeec-cCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec
Q 019117          118 EKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM  195 (346)
Q Consensus       118 ~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  195 (346)
                      ++.+..+. .|.+.|.+++|+|. ++.+|++++.||+|++||+++++.+.....  .+...+++++|+| ++.+|++|+.
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~~p-dg~~lasg~~  190 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHK-DSLLLALYSP  190 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--CSSCCCCEEEECT-TSCEEEEECT
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--CCCCceEEEEECC-CCCEEEEEcC
Confidence            44444443 67789999999982 467999999999999999999988766642  3566899999999 9999999999


Q ss_pred             CCeEEEEEccccceeeeeceeecCCCCCCCCccceece-EEEee-cccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117          196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       196 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      ||.|++||+++..                       .+ ..+.. |...|.+++|+  +.+|++++ |+.|++||+++.+
T Consensus       191 dg~i~iwd~~~~~-----------------------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~  246 (343)
T 3lrv_A          191 DGILDVYNLSSPD-----------------------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV  246 (343)
T ss_dssp             TSCEEEEESSCTT-----------------------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred             CCEEEEEECCCCC-----------------------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence            9999999999832                       23 45566 99999999998  77999999 5599999999876


Q ss_pred             CCCCCccccccccccCCCcCe--eEEEEeecCCcceEEEEcC-CCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117          272 QSPGEGTADILQKYPVPECDI--WFIKFSCDFHYNAAAIGNR-EGKIFVWELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                      ...      .+..+..|...+  .+++|+|++  .+|++++. |+.|++|++.+.......   ..+..++|+|
T Consensus       247 ~~~------~~~~~~~~~~~~~~~~~~~~~~g--~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~  309 (343)
T 3lrv_A          247 GTL------AYPTYTIPEFKTGTVTYDIDDSG--KNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQS  309 (343)
T ss_dssp             TCB------SSCCCBC-----CCEEEEECTTS--SEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC--
T ss_pred             cce------eecccccccccccceEEEECCCC--CEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCc
Confidence            311      122222233334  369999999  78999887 999999999776533222   3344555555

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-33  Score=240.65  Aligned_cols=231  Identities=19%  Similarity=0.301  Sum_probs=189.2

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----------cceeeeeccCCCceEEEEEeCCCCceEEEeeCC
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD  150 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  150 (346)
                      .|...|.+++|+  |++..+|++++.+|.|++||+.+          .+.+..+.+|...|.+++|+|.+..+|++|+.|
T Consensus       126 ~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          126 NHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             cCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            377788888887  76433999999999999999987          567788899999999999999433499999999


Q ss_pred             CCEEEEecCCCee-------EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117          151 ESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  223 (346)
Q Consensus       151 ~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (346)
                      |.|++||+..+..       ...+.   +|...|.+++|+|.++.+|++++.|+.|++||++....              
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------------  266 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------------  266 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred             CeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence            9999999987322       33444   79999999999997788999999999999999997310              


Q ss_pred             CCCccceeceEEEeecccceEEEEec--CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          224 FPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                            ..++..+..|...|++++|+  +. ++++++.||.|++||++....        .+..+..|...|.+++|+|+
T Consensus       267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------~~~~~~~h~~~v~~i~~sp~  332 (430)
T 2xyi_A          267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------KLHSFESHKDEIFQVQWSPH  332 (430)
T ss_dssp             ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEECCSSCEEEEEECSS
T ss_pred             ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------CeEEeecCCCCEEEEEECCC
Confidence                  13455677899999999998  44 799999999999999997442        57777889999999999999


Q ss_pred             CCcceEEEEcCCCcEEEEEcCCCC------------cceeeee---eeeEEEEEecCCCC
Q 019117          301 FHYNAAAIGNREGKIFVWELQSSP------------PVLIARL---ICFSLHVKYNPQSV  345 (346)
Q Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~---~~~~~~~~~spdg~  345 (346)
                      ++ .+|++++.||.|++||+....            +.....+   ...+.+++|+|+++
T Consensus       333 ~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          333 NE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  391 (430)
T ss_dssp             CT-TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred             CC-CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence            85 479999999999999998732            1233333   34589999999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.8e-34  Score=241.73  Aligned_cols=258  Identities=13%  Similarity=0.053  Sum_probs=179.4

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEc------CCCCcEEEEeecCCeEEEEEccCcce
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN------VDGIPFLVAGGINGIIRVIDVSNEKL  120 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~  120 (346)
                      ++.+||+++.|+ |+|||...+.............|.+.|.+++|++.      .+++ +|++|+.|++|+|||+.++..
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCce
Confidence            567899999998 99999988766543332333568999999999841      2677 999999999999999999888


Q ss_pred             eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc----------------------cCCCCcceE
Q 019117          121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----------------------AGGHRNEVL  178 (346)
Q Consensus       121 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------------~~~~~~~v~  178 (346)
                      +..+..|...|.+++|+|.+..+|++++.|++|++||+++++.......                      ..+|...+.
T Consensus       179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence            8888889999999999995556899999999999999988765433211                      125778899


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~  255 (346)
                      ++.|++.++..+++++.|+++++||+............    ..................+...+..+.+.   +.++++
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS----TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee----cCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            99998448999999999999999999874322111100    00000000001111222222223333332   336777


Q ss_pred             EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      |+.||+|++||+.+++         .......|..+|.+++|+|||  ++||+++.+| +.+|.+..
T Consensus       335 gs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG--~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDG--SHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             ETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTS--SEEEEEESSE-EEEEEEGG
T ss_pred             ECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCC--CEEEEEeCCC-eEEEEEeC
Confidence            8889999999999876         455556677899999999999  7899998766 66776654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-33  Score=257.37  Aligned_cols=265  Identities=13%  Similarity=0.157  Sum_probs=194.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+|.+.|++++|+|    ++.+||+|+.|+ |+||+....+....+      .+...|.+++|+  | |+ +|++++.|+
T Consensus        14 ~gh~~~V~~lafsp----dg~~lAsgs~Dg~I~lw~~~~~~~~~~~------~~~~~V~~l~fs--p-g~-~L~S~s~D~   79 (902)
T 2oaj_A           14 YGMSSKPIAAAFDF----TQNLLAIATVTGEVHIYGQQQVEVVIKL------EDRSAIKEMRFV--K-GI-YLVVINAKD   79 (902)
T ss_dssp             EECSSCEEEEEEET----TTTEEEEEETTSEEEEECSTTCEEEEEC------SSCCCEEEEEEE--T-TT-EEEEEETTC
T ss_pred             cCCCCCcEEEEECC----CCCEEEEEeCCCEEEEEeCCCcEEEEEc------CCCCCEEEEEEc--C-CC-EEEEEECcC
Confidence            58999999999999    789999999998 999997665443322      256789888887  7 77 999999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE-Ee-------cccCCCCcceEEE
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IF-------AGAGGHRNEVLSV  180 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~-------~~~~~~~~~v~~~  180 (346)
                      +|++||+.+++.+..+. |...|++++|+| ++++|++|+.||+|++||+++++... .+       ....+|.+.|+++
T Consensus        80 ~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl  157 (902)
T 2oaj_A           80 TVYVLSLYSQKVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI  157 (902)
T ss_dssp             EEEEEETTTCSEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred             eEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence            99999999999888886 778999999999 89999999999999999999887641 11       1223789999999


Q ss_pred             EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117          181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      +|+|++...+++|+.|+.| +||++..+...............  ....   ......|...|.+++|+  |++|++++.
T Consensus       158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~--~~~~---~~~~~~h~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG--GDFS---EKTNEKRTPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC--STTC---CCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred             EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC--cccc---cccccccCCCeEEEEEcCCCCEEEEEEC
Confidence            9999556889999999999 99998843221111000000000  0000   00112356789999998  889999999


Q ss_pred             cCeEEEEcCCCCCCCCCCcccccccccc-------------CCCcCeeEEEEeecCC---cceEEEEcCC-----CcEEE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYP-------------VPECDIWFIKFSCDFH---YNAAAIGNRE-----GKIFV  317 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~---~~~l~~~~~d-----g~i~i  317 (346)
                      |++|++||+++++.....    .+....             .+...|.+++|++...   ..+|++|+.|     ..+.+
T Consensus       232 Dg~i~lWd~~~g~~~~~r----~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~  307 (902)
T 2oaj_A          232 DNSLVFWDANSGHMIMAR----TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTM  307 (902)
T ss_dssp             TCCEEEEETTTCCEEEEE----CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEE
T ss_pred             CCeEEEEECCCCcEEEEE----eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEE
Confidence            999999999887631100    000000             1345799999976321   1467888665     37999


Q ss_pred             EEc
Q 019117          318 WEL  320 (346)
Q Consensus       318 wd~  320 (346)
                      |++
T Consensus       308 ~~~  310 (902)
T 2oaj_A          308 IDL  310 (902)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.4e-33  Score=220.80  Aligned_cols=267  Identities=10%  Similarity=0.103  Sum_probs=179.7

Q ss_pred             ccceeeeeecccCCCc----eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc---eeeeEeeeecC------------
Q 019117           20 KREYRVTNKLQEGKRP----LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG---VIAALQSYVDE------------   80 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~---~~~~~~~~~~~------------   80 (346)
                      ...+++..+|+...+.    +.++.|-. .+-....++++++..|++|+..++.   .+..+..+..+            
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  100 (356)
T 2w18_A           22 PGNLQLVSELKNPSGSCSVDVSAMFWER-AGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN  100 (356)
T ss_dssp             --CEEEEEEECCCCSSCEEEEEEEEEC-----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred             cceeeeeehhcCCCCCeEEEEeeeeecc-CCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence            3456777777665443    33444433 2212347888989999999999983   34333322110            


Q ss_pred             --------CCccceEEEEEEEcCC----CCcEEEEeec--------------------CCeEEEEEc-cCcceeeeeccC
Q 019117           81 --------DKEESFYTVSWACNVD----GIPFLVAGGI--------------------NGIIRVIDV-SNEKLHKSFVGH  127 (346)
Q Consensus        81 --------~~~~~v~~~~~~~~~~----~~~~l~~~~~--------------------dg~i~iwd~-~~~~~~~~~~~~  127 (346)
                              -+...|..+++  +|+    ++ .+++++.                    |+.|++|++ .+++.+..+.+|
T Consensus       101 ~~~~~~~~~~~~~v~sla~--spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~  177 (356)
T 2w18_A          101 LVCVALGNLEIREIRALFC--SSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM  177 (356)
T ss_dssp             CEEEEECSSSEEEEEEECC--------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred             eeeeeeccccccceEEEEE--CCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence                    01123444444  477    66 6666553                    788888888 447777777788


Q ss_pred             CCceEEEEEeCC--CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE------------EEE
Q 019117          128 GDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI------------ASC  193 (346)
Q Consensus       128 ~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~s~  193 (346)
                      ...+..++|+|.  ++.+|++++.|++|+|||++++++++++.....+...+.+++|+| ++.++            ++|
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC-----------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeecc
Confidence            888888888772  567999999999999999999999999973111234778889999 77765            567


Q ss_pred             ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCC
Q 019117          194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS  273 (346)
Q Consensus       194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  273 (346)
                      +.|++|++||..+.+........                  ...+|...+.+..+++.++++++.|++|+|||+.+++  
T Consensus       257 s~D~tIklWd~~tgk~l~v~~~~------------------~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk--  316 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSVGVMLYC------------------LPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ--  316 (356)
T ss_dssp             -CCEEEEEEETTTTEEEEEEEEC------------------CCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS--
T ss_pred             CCCcEEEEEECCCCEEEEEEEee------------------ccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCc--
Confidence            88999999999874321100000                  0124444455556668899999999999999999987  


Q ss_pred             CCCccccccccccCCCcCee-EEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          274 PGEGTADILQKYPVPECDIW-FIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                             .+.++.+|...+. .++|+||+  ++|++|+.|++|+|||+
T Consensus       317 -------~l~tL~gH~~~vvs~vafSPDG--~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          317 -------CTALLPPVSDQHWSFVKWSGTD--SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -------EEEEECCC--CCCCEEEECSSS--SEEEEECTTSCEEEEEE
T ss_pred             -------EEEEecCCCCCeEEEEEECCCC--CEEEEEECCCcEEEecC
Confidence                   7888888876655 58999999  79999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=238.66  Aligned_cols=262  Identities=13%  Similarity=0.160  Sum_probs=193.9

Q ss_pred             cceeeeeecccCC------------CceEEEEEEeecCCCc--cEEEEEcCCc-EEEEEeccCceeee------------
Q 019117           21 REYRVTNKLQEGK------------RPLYAVVFNFIDSRYF--NVFATVGGNR-VTVYQCLEGGVIAA------------   73 (346)
Q Consensus        21 ~~~~~~~~~~~h~------------~~v~~~~~~p~~~~~~--~~la~~~~~~-v~i~~~~~~~~~~~------------   73 (346)
                      .++++...+.+|.            +.|++++|+|    ++  .+|++++.|+ |++|++.++.....            
T Consensus        69 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~----~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~  144 (447)
T 3dw8_B           69 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP----QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR  144 (447)
T ss_dssp             CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC----CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-------
T ss_pred             cceeEecccccccccccccccccccCceEEEEEcC----CCCcceEEEeCCCCeEEEEecccccCCcceecccCcccccc
Confidence            4566788889998            8899999999    44  6888888888 99999876443210            


Q ss_pred             -----------------------EeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceee-------
Q 019117           74 -----------------------LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHK-------  122 (346)
Q Consensus        74 -----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------  122 (346)
                                             ........|...|.+++|+  |+++ +|++| .|+.|++||+.+ ++.+.       
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~  220 (447)
T 3dw8_B          145 DPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN--SDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPA  220 (447)
T ss_dssp             -CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC--TTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCS
T ss_pred             CcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc--CCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccc
Confidence                                   0001113477888888887  8898 99998 799999999984 44443       


Q ss_pred             eeccCCCceEEEEEeCCCC-ceEEEeeCCCCEEEEecCCCee----EEEecccCCCCc------------ceEEEEecCC
Q 019117          123 SFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGIC----ILIFAGAGGHRN------------EVLSVDFHPS  185 (346)
Q Consensus       123 ~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~  185 (346)
                      .+.+|...|.+++|+| ++ .+|++|+.||.|++||+++++.    +..+.   .|..            .|.+++|+| 
T Consensus       221 ~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~-  295 (447)
T 3dw8_B          221 NMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSH-  295 (447)
T ss_dssp             SGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECT-
T ss_pred             cccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEec---cCCCccccccccccCceEEEEEECC-
Confidence            3568999999999999 65 8999999999999999998886    66776   5665            899999999 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc---------------eEEEEec-
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY---------------VDCNRWL-  249 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~-  249 (346)
                      ++.+|++++. +.|++||++...                      .++..+..|...               +..++|+ 
T Consensus       296 ~g~~l~~~~~-~~v~iwd~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~  352 (447)
T 3dw8_B          296 SGRYMMTRDY-LSVKVWDLNMEN----------------------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG  352 (447)
T ss_dssp             TSSEEEEEES-SEEEEEETTCCS----------------------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT
T ss_pred             CCCEEEEeeC-CeEEEEeCCCCc----------------------cccceeeccccccccccccccccccccceEEEECC
Confidence            9999999998 999999998611                      123344444421               2237777 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCcccc-----------------------ccccccCCCcCeeEEEEeecCCcce
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-----------------------ILQKYPVPECDIWFIKFSCDFHYNA  305 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~~~s~~~~~~~  305 (346)
                       +++|++++.||.|++||+.+++.........                       ...........|..++|+|++  .+
T Consensus       353 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~  430 (447)
T 3dw8_B          353 SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE--NI  430 (447)
T ss_dssp             TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS--SE
T ss_pred             CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCC--CE
Confidence             7899999999999999999875321100000                       000011234578999999999  78


Q ss_pred             EEEEcCCCcEEEEEcC
Q 019117          306 AAIGNREGKIFVWELQ  321 (346)
Q Consensus       306 l~~~~~dg~i~iwd~~  321 (346)
                      ||+++.++ +++|.-+
T Consensus       431 la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          431 IAVATTNN-LYIFQDK  445 (447)
T ss_dssp             EEEECSSC-EEEEECC
T ss_pred             EEEEecce-eeeeccc
Confidence            99888775 7888643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.2e-33  Score=234.97  Aligned_cols=229  Identities=15%  Similarity=0.223  Sum_probs=187.8

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeec-------------
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFV-------------  125 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------  125 (346)
                      +++|++..+.....+..     |...|.+++|+  | +++ +|++|+.||.|++||+.+++....+.             
T Consensus        25 ~~v~~~~~~~~~~~~~~-----h~~~v~~~~~s--~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   96 (408)
T 4a11_B           25 RRVLGLELNKDRDVERI-----HGGGINTLDIE--PVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD   96 (408)
T ss_dssp             HHHHTEEECTTEEECCC-----CSSCEEEEEEC--TTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred             ceeeccccCcceeeeec-----cCCcEEEEEEe--cCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence            67777777666555543     78899888887  8 888 99999999999999999887655443             


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEE
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd  203 (346)
                      +|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+.    +...+.++.++|.  ++.++++++.|+.|++||
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            5999999999999777899999999999999999999998886    7888999999983  234999999999999999


Q ss_pred             ccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-EEEEEeecCeEEEEcCCCCCCCCC-----
Q 019117          204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPG-----  275 (346)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~-----  275 (346)
                      ++.                       ...+..+..|...|.+++|+  +. ++++++.||.|++||++.......     
T Consensus       173 ~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~  229 (408)
T 4a11_B          173 LKS-----------------------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH  229 (408)
T ss_dssp             SSS-----------------------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred             CCC-----------------------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence            987                       34566777899999999998  44 699999999999999987652110     


Q ss_pred             --CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          276 --EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       276 --~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                        ............|...|.+++|+|++  .+|++++.||.|++||+.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          230 NGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCB
T ss_pred             ccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCcc
Confidence              01111233346688899999999999  7999999999999999988653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.6e-32  Score=226.84  Aligned_cols=219  Identities=18%  Similarity=0.275  Sum_probs=175.4

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc----ceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEE
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRL  155 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~i  155 (346)
                      .|.+.|.+++|+  |+++ +|++|+.||.|++||+.++    +....+.+|...|.+++|+|. ++.+|++++.||.|++
T Consensus         9 gH~~~v~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            9 GHDDLVHDVVYD--FYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             CCSSCEEEEEEC--SSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             ccccceeEEEEc--CCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            488899988887  8898 9999999999999999876    466777899999999999984 3789999999999999


Q ss_pred             EecCCC---------eeEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117          156 WNVQTG---------ICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  224 (346)
Q Consensus       156 wd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (346)
                      ||++++         +.+..+.   .|...|.+++|+| +  +.++++++.||.|++||++.............      
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------  155 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLN---DSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE------  155 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE------
T ss_pred             EecCCCcccccccCcceeeeec---ccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccc------
Confidence            999877         5566666   7999999999999 7  89999999999999999988432111100000      


Q ss_pred             CCccceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117          225 PTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  299 (346)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  299 (346)
                          ..........|...+.++.|+     +.++++++.|+.+.+|+....+       ...+..+.+|...|.+++|+|
T Consensus       156 ----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p  224 (351)
T 3f3f_A          156 ----MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAP  224 (351)
T ss_dssp             ----EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECC
T ss_pred             ----ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECC
Confidence                000001112577788999986     6799999999999888877654       124677788999999999999


Q ss_pred             cCCc--ceEEEEcCCCcEEEEEcCCC
Q 019117          300 DFHY--NAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       300 ~~~~--~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ++..  .+|++++.||.|++||+.++
T Consensus       225 ~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          225 SIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            9732  48999999999999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5e-32  Score=232.14  Aligned_cols=274  Identities=14%  Similarity=0.035  Sum_probs=214.5

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      ++....+..+. .+.+++|+|    ++.++++++.++ |++||..+++....+.......|...+.+++|.  +++. ++
T Consensus       113 ~~~~~~~~~~~-~~~~~~~s~----~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~~  184 (433)
T 3bws_A          113 HRFISRFKTGF-QPKSVRFID----NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNE-LW  184 (433)
T ss_dssp             EEEEEEEECSS-CBCCCEESS----SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTE-EE
T ss_pred             ceEEEEEcCCC-CceEEEEeC----CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCE-EE
Confidence            34455555444 456899998    578888888887 999999888776544322223466788888774  8888 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      ++++.|+.|++||+.+++.+..+..|...+.+++|+| ++..+ ++++.|+.|++||+++++.+..+.    ....+.++
T Consensus       185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~  259 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGL  259 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEE
T ss_pred             EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEE
Confidence            9999999999999999999999988999999999999 66655 566689999999999999888876    45669999


Q ss_pred             EecCCCCcEEEEEe--------cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C
Q 019117          181 DFHPSDIYRIASCG--------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G  250 (346)
Q Consensus       181 ~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~  250 (346)
                      +|+| ++..+++++        .|+.|++||+++.+                       .. ....|...+.+++|+  +
T Consensus       260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~g  314 (433)
T 3bws_A          260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEK-----------------------LI-DTIGPPGNKRHIVSGNTE  314 (433)
T ss_dssp             EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----------------------EE-EEEEEEECEEEEEECSST
T ss_pred             EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCc-----------------------EE-eeccCCCCcceEEECCCC
Confidence            9999 887888877        48899999998732                       12 223455678889998  5


Q ss_pred             C-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC---------------CCc
Q 019117          251 D-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---------------EGK  314 (346)
Q Consensus       251 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---------------dg~  314 (346)
                      + ++++++.|+.|++||+.+++         .+..+. +...+.+++|+|++  ++|++++.               ||.
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~g~~dg~  382 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKK---------VQKSIP-VFDKPNTIALSPDG--KYLYVSCRGPNHPTEGYLKKGLVLGK  382 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSSEEEEEECTTS--SEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred             CEEEEEecCCCEEEEEECCCCc---------EEEEec-CCCCCCeEEEcCCC--CEEEEEecCCCccccccccccccceE
Confidence            4 55667889999999999765         344443 45678999999999  56666655               579


Q ss_pred             EEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          315 IFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       315 i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      |++||+.+++.+........+.+++|+|||++
T Consensus       383 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  414 (433)
T 3bws_A          383 VYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRY  414 (433)
T ss_dssp             EEEEETTTTEEEEEEECSSSEEEEEECTTSCE
T ss_pred             EEEEECCCCcEEEEecCCCCCceEEEcCCCCE
Confidence            99999999887777666667899999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-33  Score=255.12  Aligned_cols=260  Identities=13%  Similarity=0.041  Sum_probs=192.0

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee--eeEeeee----cCCCccceEEEEEEEcCCCCcEE
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI--AALQSYV----DEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~--~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +.+|...+..++|+|    ++++||+|+.|+ |++||+.++...  ..+....    ...|...|.+++|+  |+|+ +|
T Consensus       431 l~G~~~~v~sv~~sp----dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs--pdg~-~L  503 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAE----YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA--AETL-EL  503 (902)
T ss_dssp             CCCSBCCCCCCCCCS----EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE--TTTT-EE
T ss_pred             ccCCcCCCCcccccc----cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec--CCCC-eE
Confidence            455555555566666    789999999999 999999877432  1111100    01477789888887  9999 99


Q ss_pred             EEeecCCeEEEEEccCcc---------------------------------------------eeeeeccCCCceEEEEE
Q 019117          102 VAGGINGIIRVIDVSNEK---------------------------------------------LHKSFVGHGDSINEIRT  136 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~  136 (346)
                      |+|+.||+|+|||+.+++                                             ++..+.+|.+.|++++|
T Consensus       504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf  583 (902)
T 2oaj_A          504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN  583 (902)
T ss_dssp             EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred             EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence            999999999999998662                                             36678889999999999


Q ss_pred             eCCCCceEEEeeCCCCEEEEecCCCeeEE--EecccC-CCCcceEEEEec-----CCC---CcEEEEEecCCeEEEEEc-
Q 019117          137 QPLKPSLVVSASKDESVRLWNVQTGICIL--IFAGAG-GHRNEVLSVDFH-----PSD---IYRIASCGMDNTVKIWSM-  204 (346)
Q Consensus       137 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~~-----~~~---~~~l~s~~~d~~i~iwd~-  204 (346)
                      +| ++ +|++|+.|++|++||++++..+.  .+.... +|...|++++|+     | +   +.+|++|+.|++|++||+ 
T Consensus       584 Sp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~  660 (902)
T 2oaj_A          584 SN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKIL  660 (902)
T ss_dssp             CB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEE
T ss_pred             cC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEe
Confidence            99 78 99999999999999998877664  232332 799999999999     8 5   489999999999999999 


Q ss_pred             --cccceeeeeceeecCCCCCCCCccceeceEEEeec-----ccceEEEE-ec----------------------CC-EE
Q 019117          205 --KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-----SNYVDCNR-WL----------------------GD-FI  253 (346)
Q Consensus       205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~-~~----------------------~~-~l  253 (346)
                        .+++                       ....+.+|     ...|..+. |+                      .+ ++
T Consensus       661 p~~~g~-----------------------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~  717 (902)
T 2oaj_A          661 PASGGK-----------------------FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIV  717 (902)
T ss_dssp             ECGGGC-----------------------EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEE
T ss_pred             cCCCCc-----------------------EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEE
Confidence              3322                       11222222     23344333 22                      12 33


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEE---E------EeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI---K------FSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~------~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ++++ +..||||++.+++         +.++.-.|...+.++   .      |++++  ..|++++.||.|++|++.+.+
T Consensus       718 l~~~-~~~ir~~~~~~~k---------~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~g~i~~~s~p~l~  785 (902)
T 2oaj_A          718 LITG-FDDIRLITLGKSK---------STHKGFKYPLAATGLSYISTVEKNNDRKNL--TVIITLEINGHLRVFTIPDFK  785 (902)
T ss_dssp             EEEC-SSEEEEECTTCCC---------EEEEECSSCEEEEEEEEEEEECSSSCEEEE--EEEEEEETTSEEEEEETTTCC
T ss_pred             EEEe-ccceEEEeCcccc---------ceeeEcccceeeeEEEEEEeccccccccCc--eEEEEEeCCCcEEEEECcchH
Confidence            3333 7899999999876         454444455666665   5      67877  689999999999999999999


Q ss_pred             cceeeeeee
Q 019117          325 PVLIARLIC  333 (346)
Q Consensus       325 ~~~~~~~~~  333 (346)
                      .+....+..
T Consensus       786 ~~~~~~~~~  794 (902)
T 2oaj_A          786 EQMSEHIPF  794 (902)
T ss_dssp             EEEEEECSS
T ss_pred             HHhhccCCc
Confidence            777666543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.1e-32  Score=226.89  Aligned_cols=253  Identities=11%  Similarity=0.077  Sum_probs=200.3

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      .....+.+|...|++++|+|    ++++|++++.|+ |++||+.+++......      |...|.+++|.+++++. +|+
T Consensus        77 ~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~-~l~  145 (368)
T 3mmy_A           77 TIPKAQQMHTGPVLDVCWSD----DGSKVFTASCDKTAKMWDLSSNQAIQIAQ------HDAPVKTIHWIKAPNYS-CVM  145 (368)
T ss_dssp             EEEEEEEECSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEEEECSSCE-EEE
T ss_pred             eeEEEeccccCCEEEEEECc----CCCEEEEEcCCCcEEEEEcCCCCceeecc------ccCceEEEEEEeCCCCC-EEE
Confidence            34466789999999999999    789999999998 9999998887655332      78899999997779998 999


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      +++.||.|++||+.+++.+..+..+. .+.++.+.+   ..+++++.++.+.+|+++........... .+...+.++++
T Consensus       146 ~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  220 (368)
T 3mmy_A          146 TGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIES-PLKHQHRCVAI  220 (368)
T ss_dssp             EEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCC-SCSSCEEEEEE
T ss_pred             EccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccc-cccCCCceEEE
Confidence            99999999999999999888888664 677777765   47888888999999999876543332211 23445556665


Q ss_pred             cCCCC----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc------------ceEEE
Q 019117          183 HPSDI----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN------------YVDCN  246 (346)
Q Consensus       183 ~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~  246 (346)
                      .+ +.    ..+++++.||.|++||++....                    ......+..|..            .|.++
T Consensus       221 ~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (368)
T 3mmy_A          221 FK-DKQNKPTGFALGSIEGRVAIHYINPPNP--------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGI  279 (368)
T ss_dssp             EE-CTTSCEEEEEEEETTSEEEEEESSCSCH--------------------HHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred             cc-cCCCCCCeEEEecCCCcEEEEecCCCCc--------------------cccceeeeeeecccccccccccccceEEE
Confidence            54 33    3399999999999999987321                    123344445544            79999


Q ss_pred             Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +|+  +++|++++.||.|++||+.+++         .+..+..|...|.+++|+|++  .+|++++.|+..+.|++.+.+
T Consensus       280 ~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~g--~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          280 AFHPVHGTLATVGSDGRFSFWDKDART---------KLKTSEQLDQPISACCFNHNG--NIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             EECTTTCCEEEEETTSCEEEEETTTTE---------EEEECCCCSSCEEEEEECTTS--SCEEEEECCCSTTCGGGCCTT
T ss_pred             EEecCCCEEEEEccCCeEEEEECCCCc---------EEEEecCCCCCceEEEECCCC--CeEEEEecccccccccccCCC
Confidence            998  7799999999999999999876         678888899999999999999  789999998876666655443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-33  Score=251.39  Aligned_cols=230  Identities=17%  Similarity=0.189  Sum_probs=193.7

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc--CcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEE
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLW  156 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iw  156 (346)
                      .|.+.|.+++|+  |+++ +|++|+.||.|++||+.  +++.+..+.+|.+.|.+++|+| +  +++|++|+.||.|++|
T Consensus         7 gH~~~V~~l~~s--~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            7 AHNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -CCCCEEEECCC--SSSC-CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred             cCcceeEEEEEC--CCCC-eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence            478889888877  8898 99999999999999998  5567888999999999999998 5  8899999999999999


Q ss_pred             ecCCCe--eEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          157 NVQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       157 d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                      |+.+++  .+..+.   +|...|++++|+| +  +.++++++.||.|++||++...                     ...
T Consensus        83 d~~~~~~~~~~~~~---~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~---------------------~~~  137 (753)
T 3jro_A           83 KEENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENG---------------------TTS  137 (753)
T ss_dssp             EEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSS---------------------CCC
T ss_pred             ECCCCccccccccc---CCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCC---------------------Ccc
Confidence            999886  566665   7999999999999 6  8999999999999999998732                     123


Q ss_pred             eEEEeecccceEEEEecC---------------CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE
Q 019117          233 VFIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  297 (346)
Q Consensus       233 ~~~~~~~~~~i~~~~~~~---------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  297 (346)
                      ......|...|.++.|++               .++++++.||.|++||+++...     .......+.+|...|.+++|
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~  212 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAW  212 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEE
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-----cceeeeeecCCCCcEEEEEe
Confidence            445678999999999973               6899999999999999987642     12356677889999999999


Q ss_pred             eec---CCcceEEEEcCCCcEEEEEcCCCCcc------eeeeeeeeEEEEEecCCCCC
Q 019117          298 SCD---FHYNAAAIGNREGKIFVWELQSSPPV------LIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       298 s~~---~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~spdg~~  346 (346)
                      +|+   +  .+|++++.||.|++||+.+++..      ....+.+.+.+++|+|+|++
T Consensus       213 sp~~~~~--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  268 (753)
T 3jro_A          213 SPTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  268 (753)
T ss_dssp             CCCCSSS--EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC
T ss_pred             ccCCCCC--CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE
Confidence            999   6  79999999999999999987421      12234556889999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=229.14  Aligned_cols=270  Identities=13%  Similarity=0.102  Sum_probs=196.9

Q ss_pred             ccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEec--cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .+|.+.|++++|+|    ++++| ++++.|+ |++|++.  ++..+..+..+   .+...+.+++|+  |+++ +|++|+
T Consensus        99 ~~~~~~v~~~~~s~----d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s--p~~~-~l~~~~  168 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS----DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIA--EDDT-TVIIAD  168 (450)
T ss_dssp             -CCCCCEEEEEECT----TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEEC--TTSS-EEEEEE
T ss_pred             CccCCceEEEEEcC----CCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEc--CCCC-EEEEEe
Confidence            46778999999999    67885 8898887 9999998  77777776642   255677777776  9998 999999


Q ss_pred             cCCeEEEEEccCcceee----eeccCCCceEEEEEeCCC---CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          106 INGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLK---PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      .+|.|++|++.+++...    .+.+|...|.+++|+| +   +.+|++++.|+.|++||+++++.+..+..  +|...|.
T Consensus       169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~  245 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--GHKHFVS  245 (450)
T ss_dssp             TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--CCSSCEE
T ss_pred             CCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--CCCCceE
Confidence            99999999998877554    7788999999999999 7   88999999999999999999988877322  6999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceee--cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW--TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      +++|+  ++.+|++++.|+.|++||+++.+.........  .........................|.++.|+  +++++
T Consensus       246 ~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  323 (450)
T 2vdu_B          246 SICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA  323 (450)
T ss_dssp             EEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred             EEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence            99999  78899999999999999999854322111000  00000000000000000111234568888888  78999


Q ss_pred             EEe-ecCeEEEEcC--CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC------CCcEEEEEcCCC
Q 019117          255 SKS-VDNEIVLWEP--KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR------EGKIFVWELQSS  323 (346)
Q Consensus       255 ~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~------dg~i~iwd~~~~  323 (346)
                      +++ .|+.|++|++  ....      ....+..+..+ ..|.+++|+|++  .++++++.      +..|.+|.+...
T Consensus       324 ~~~~~d~~i~iw~~~~~~~~------~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          324 FFVEATKCIIILEMSEKQKG------DLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEETTCSEEEEEEECSSSTT------CEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEECCCCeEEEEEeccCCCC------ceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEcC
Confidence            988 8999999999  4331      12356666666 789999999964  34444443      556889887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-31  Score=221.49  Aligned_cols=246  Identities=14%  Similarity=0.133  Sum_probs=196.8

Q ss_pred             eeecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEe-ccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQC-LEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ...+.+|...|.+++|+|    ++. +|++++.++ |++|++ .++.. ..+..   ..|...|.+++|.  | +. +|+
T Consensus        49 ~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~---~~~~~~v~~l~~~--~-~~-~l~  116 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFID----NTDLQIYVGTVQGEILKVDLIGSPSF-QALTN---NEANLGICRICKY--G-DD-KLI  116 (342)
T ss_dssp             EEEEEECSSCEEEEEEEE----SSSEEEEEEETTSCEEEECSSSSSSE-EECBS---CCCCSCEEEEEEE--T-TT-EEE
T ss_pred             ceeeeecCCceEEEEECC----CCCcEEEEEcCCCeEEEEEeccCCce-Eeccc---cCCCCceEEEEeC--C-CC-EEE
Confidence            344568999999999999    688 999999888 999998 76644 22221   1277889888887  7 66 999


Q ss_pred             EeecCCeEEEEEccC---------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeE--EEeccc
Q 019117          103 AGGINGIIRVIDVSN---------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICI--LIFAGA  170 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~--~~~~~~  170 (346)
                      +++.|+.|++||+.+         ++.+..+. |...|.+++|+| +.  +++++.|+.|++||+++ +...  ....  
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~--  190 (342)
T 1yfq_A          117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEES--  190 (342)
T ss_dssp             EEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEEC--
T ss_pred             EEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeec--
Confidence            999999999999988         77777777 889999999998 44  99999999999999987 5432  2222  


Q ss_pred             CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc---------
Q 019117          171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---------  241 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  241 (346)
                       .|...+.+++|+|.++.++++++.||.|++|+++....                 .........+..|..         
T Consensus       191 -~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
T 1yfq_A          191 -GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----------------DYNSSKRFAFRCHRLNLKDTNLAY  252 (342)
T ss_dssp             -SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----------------STTCTTCEEEECCCCCTTCCSSCC
T ss_pred             -CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----------------ccccccceeeecccccccccccce
Confidence             58889999999973567899999999999999987300                 000123445566654         


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEcCCCc-EEE
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGK-IFV  317 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~-i~i  317 (346)
                      .|.+++|+  +++|++++.||.|++||+.+++         .+..+..| ...|.+++  |++  .+|++++.||. .+.
T Consensus       253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~--~~~--~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---------KIKNFAKFNEDSVVKIA--CSD--NILCLATSDDTFKTN  319 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTE---------EEEECCCCSSSEEEEEE--ECS--SEEEEEEECTHHHHC
T ss_pred             eEEEEEEcCCCCEEEEecCCceEEEEcCccHh---------HhhhhhcccCCCceEec--CCC--CeEEEEecCCccccc
Confidence            89999998  7899999999999999999876         67778888 89999999  888  79999999998 655


Q ss_pred             EEc
Q 019117          318 WEL  320 (346)
Q Consensus       318 wd~  320 (346)
                      |..
T Consensus       320 ~~~  322 (342)
T 1yfq_A          320 AAI  322 (342)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            553

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.7e-30  Score=215.97  Aligned_cols=254  Identities=14%  Similarity=0.062  Sum_probs=195.7

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .++...+.+|. .+.+++|+|    +++++ ++++.++ |++||+.+++....+..      ...+.+++|+  |+++ +
T Consensus        22 ~~~~~~~~~~~-~~~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------~~~v~~~~~s--pdg~-~   87 (391)
T 1l0q_A           22 NKVTATIPVGS-NPMGAVISP----DGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSSPQGVAVS--PDGK-Q   87 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECT----TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSSEEEEEEC--TTSS-E
T ss_pred             CeEEEEeecCC-CcceEEECC----CCCEEEEECCCCCeEEEEECCCCeEEEEEEC------CCCccceEEC--CCCC-E
Confidence            34555666665 489999999    67765 6776666 99999988887776652      3367777766  9998 5


Q ss_pred             E-EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          101 L-VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       101 l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      | ++++.++.|++||+.+++.+..+..+ ..+.+++|+| +++.+ ++++.|+.|++||+.+++.+..+.    ....+.
T Consensus        88 l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~  161 (391)
T 1l0q_A           88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVS----VGRSPK  161 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CCSSEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEe----cCCCcc
Confidence            5 55667799999999999988887754 5689999999 66655 788889999999999999988887    345679


Q ss_pred             EEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      +++|+| ++..+ ++++.++.|++||+++.+                       ....+ .+...+.+++|+  ++++++
T Consensus       162 ~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~g~~l~~  216 (391)
T 1l0q_A          162 GIAVTP-DGTKVYVANFDSMSISVIDTVTNS-----------------------VIDTV-KVEAAPSGIAVNPEGTKAYV  216 (391)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEETTTTE-----------------------EEEEE-ECSSEEEEEEECTTSSEEEE
T ss_pred             eEEECC-CCCEEEEEeCCCCEEEEEECCCCe-----------------------EEEEE-ecCCCccceEECCCCCEEEE
Confidence            999999 66555 677889999999998732                       22222 355678889998  778888


Q ss_pred             Ee---ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          256 KS---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       256 ~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      ++   .++.|++||+.+++         .+..+..+. .+.+++|+|+++ .++++++.|+.|++||+.+++.+......
T Consensus       217 ~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~-~~~~~~~s~dg~-~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          217 TNVDKYFNTVSMIDTGTNK---------ITARIPVGP-DPAGIAVTPDGK-KVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             EEECSSCCEEEEEETTTTE---------EEEEEECCS-SEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EecCcCCCcEEEEECCCCe---------EEEEEecCC-CccEEEEccCCC-EEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence            87   68999999998775         455555544 578999999994 24478899999999999998766555433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.5e-30  Score=217.07  Aligned_cols=246  Identities=11%  Similarity=0.070  Sum_probs=193.2

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      .++++++.++ |++||+.+++.+..+..      ...+.+++|+  |+++.++++++.|+.|++||+.+++.+..+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPV------GSNPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeec------CCCcceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            5788888887 99999998887776653      2346666665  9998334777789999999999999988887655


Q ss_pred             CceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccc
Q 019117          129 DSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKE  206 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~  206 (346)
                       .+.+++|+| +++.| ++++.++.|++||+.+++.+..+.    +...+.+++|+| +++.+ ++++.++.|++||+.+
T Consensus        75 -~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           75 -SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             -SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred             -CccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe----CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC
Confidence             899999999 66655 566678999999999999988887    456789999999 66655 7888899999999987


Q ss_pred             cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccc
Q 019117          207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQ  283 (346)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  283 (346)
                      .                       ..+..+..+ ..+.++.|+  ++++ ++++.++.|++||+++++         .+.
T Consensus       148 ~-----------------------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~  194 (391)
T 1l0q_A          148 K-----------------------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VID  194 (391)
T ss_dssp             T-----------------------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEE
T ss_pred             C-----------------------cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EEE
Confidence            3                       233344433 456888888  6666 677889999999998875         333


Q ss_pred             cccCCCcCeeEEEEeecCCcceEEEEc---CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          284 KYPVPECDIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      .+. +...+.+++|+|++  .+|++++   .++.|++||+.+++.+........+.+++|+|||++
T Consensus       195 ~~~-~~~~~~~~~~~~~g--~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  257 (391)
T 1l0q_A          195 TVK-VEAAPSGIAVNPEG--TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK  257 (391)
T ss_dssp             EEE-CSSEEEEEEECTTS--SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred             EEe-cCCCccceEECCCC--CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCE
Confidence            333 34578999999999  5677766   689999999999887766666666889999999973

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.2e-31  Score=220.96  Aligned_cols=210  Identities=10%  Similarity=0.059  Sum_probs=164.6

Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC---------CCee
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TGIC  163 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------~~~~  163 (346)
                      +.+++. +|++|+.||.|++||+.+++.+..+.  ...|.++.|+| .   +++++.|++|++|+..         +++.
T Consensus        44 ~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           44 MYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            335666 99999999999999999999888776  56788899998 4   9999999999999765         4444


Q ss_pred             EEEecccCCCCcceEEEEecC-CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eeccc
Q 019117          164 ILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSN  241 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  241 (346)
                      +..+..  +|...|.+++|+| .++.++++++.||.|++||++..+                       ..... ..|..
T Consensus       117 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~~~  171 (343)
T 3lrv_A          117 LREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------------------QYIVHSAKSDV  171 (343)
T ss_dssp             EEEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------------------EEEEECCCSSC
T ss_pred             eEEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------------------EEEEEecCCCC
Confidence            444432  5778999999997 256789999999999999998732                       22222 23555


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc-ccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL-QKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      .+.+++|+  +.+|++|+.|+.|++||+++++         .+ ..+.. |...|.+++|+|++  .+|++++ |+.|++
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~---------~~~~~~~~~h~~~v~~l~fs~~g--~~l~s~~-~~~v~i  239 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPD---------QASSRFPVDEEAKIKEVKFADNG--YWMVVEC-DQTVVC  239 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTT---------SCCEECCCCTTSCEEEEEECTTS--SEEEEEE-SSBEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCC---------CCccEEeccCCCCEEEEEEeCCC--CEEEEEe-CCeEEE
Confidence            79999998  8899999999999999999876         33 56666 88999999999999  7899999 559999


Q ss_pred             EEcCCCCcceeeee----eeeE--EEEEecCCCCC
Q 019117          318 WELQSSPPVLIARL----ICFS--LHVKYNPQSVY  346 (346)
Q Consensus       318 wd~~~~~~~~~~~~----~~~~--~~~~~spdg~~  346 (346)
                      ||+++++.......    ...+  .+++|+|+|+|
T Consensus       240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             EETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             EEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            99999876543221    1122  36999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.8e-30  Score=216.92  Aligned_cols=197  Identities=12%  Similarity=0.048  Sum_probs=160.6

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEc--CCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~--~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      +...+.+++|||    +|+++|+++  .|+ |+|||..+++.+..+.      +...|.+++|+  |+|+ +|++++.+ 
T Consensus       132 ~~~~~~~v~fSp----Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~------~~~~V~~v~fs--pdg~-~l~s~s~~-  197 (365)
T 4h5i_A          132 ADDYTKLVYISR----EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE------TRGEVKDLHFS--TDGK-VVAYITGS-  197 (365)
T ss_dssp             TTCCEEEEEECT----TSSCEEEEESCSSCEEEEEETTTTEEEEEEE------CSSCCCEEEEC--TTSS-EEEEECSS-
T ss_pred             cccCEEEEEEcC----CCCEEEEEECCCCCEEEEeECCCCcEEEEeC------CCCceEEEEEc--cCCc-eEEeccce-
Confidence            455689999999    788876544  566 9999999888776664      55678877776  9999 99998855 


Q ss_pred             eEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCCC----CEEEEecCCCee----EEEecccCCCCcceE
Q 019117          109 IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGIC----ILIFAGAGGHRNEVL  178 (346)
Q Consensus       109 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~----~~~~~~~~~~~~~v~  178 (346)
                      .+.+|+..+++.+.  ....|...|.+++|+| ++..+++++.|+    .+++|++.....    ...+.   +|...|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~V~  273 (365)
T 4h5i_A          198 SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT---NRFKGIT  273 (365)
T ss_dssp             CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE---SSCSCEE
T ss_pred             eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeec---CCCCCeE
Confidence            56777777776543  3456889999999999 889999998887    588899876653    23344   7899999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE-EeecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      +++|+| ++++|++|+.|++|++||+++                       ..++.. +.+|...|++++|+  +++|++
T Consensus       274 ~~~~Sp-dg~~lasgs~D~~V~iwd~~~-----------------------~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          274 SMDVDM-KGELAVLASNDNSIALVKLKD-----------------------LSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             EEEECT-TSCEEEEEETTSCEEEEETTT-----------------------TEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             eEEECC-CCCceEEEcCCCEEEEEECCC-----------------------CcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            999999 999999999999999999998                       334555 46899999999999  889999


Q ss_pred             EeecCeEEEEcCCCC
Q 019117          256 KSVDNEIVLWEPKMK  270 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~  270 (346)
                      ++.|++|+|||+...
T Consensus       330 ~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          330 VSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSEEEEEECCTT
T ss_pred             EeCCCeEEEEEcCCC
Confidence            999999999999654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=6.8e-29  Score=212.67  Aligned_cols=240  Identities=8%  Similarity=-0.035  Sum_probs=192.9

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEee
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGG  105 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~  105 (346)
                      .+.+|...|.+++|+|    ++.++++++.++ |++||+.+++....+..     +...+.+++|.  |+++ ++ ++++
T Consensus       164 ~~~~~~~~v~~~~~~~----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~-~l~~~~~  231 (433)
T 3bws_A          164 KYKKKLGFVETISIPE----HNELWVSQMQANAVHVFDLKTLAYKATVDL-----TGKWSKILLYD--PIRD-LVYCSNW  231 (433)
T ss_dssp             HHHTTCCEEEEEEEGG----GTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----SSSSEEEEEEE--TTTT-EEEEEET
T ss_pred             cccccCCceeEEEEcC----CCEEEEEECCCCEEEEEECCCceEEEEEcC-----CCCCeeEEEEc--CCCC-EEEEEec
Confidence            4568999999999988    788999999877 99999988887766653     56677777776  8898 55 5666


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee--------CCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS--------KDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      .++.|++||+.+++.+..+..+ ..+.+++|+| ++..+++++        .|+.|++||+++++.+..+.    +...+
T Consensus       232 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~  305 (433)
T 3bws_A          232 ISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNK  305 (433)
T ss_dssp             TTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECE
T ss_pred             CCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCc
Confidence            8999999999999888887754 4589999999 788888877        58899999999998887775    67789


Q ss_pred             EEEEecCCCC-cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          178 LSVDFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       178 ~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      .+++|+| ++ .++++++.|+.|++||+.+.                       .....+ .+...+.+++|+  +++++
T Consensus       306 ~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~-----------------------~~~~~~-~~~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          306 RHIVSGN-TENKIYVSDMCCSKIEVYDLKEK-----------------------KVQKSI-PVFDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEEECS-STTEEEEEETTTTEEEEEETTTT-----------------------EEEEEE-ECSSSEEEEEECTTSSEEE
T ss_pred             ceEEECC-CCCEEEEEecCCCEEEEEECCCC-----------------------cEEEEe-cCCCCCCeEEEcCCCCEEE
Confidence            9999999 55 56677799999999999872                       223333 366778899998  77888


Q ss_pred             EEee---------------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEE
Q 019117          255 SKSV---------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVW  318 (346)
Q Consensus       255 ~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iw  318 (346)
                      +++.               ||.|++||+.+++         .+..+.. ...+.+++|+|++  ++|++++ .|+.|++|
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---------~~~~~~~-~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---------VKEFWEA-GNQPTGLDVSPDN--RYLVISDFLDHQIRVY  428 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---------EEEEEEC-SSSEEEEEECTTS--CEEEEEETTTTEEEEE
T ss_pred             EEecCCCccccccccccccceEEEEEECCCCc---------EEEEecC-CCCCceEEEcCCC--CEEEEEECCCCeEEEE
Confidence            8776               5799999998876         4444544 3478999999999  5676665 59999999


Q ss_pred             EcCC
Q 019117          319 ELQS  322 (346)
Q Consensus       319 d~~~  322 (346)
                      ++..
T Consensus       429 ~~~~  432 (433)
T 3bws_A          429 RRDG  432 (433)
T ss_dssp             EETT
T ss_pred             EecC
Confidence            9864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=5.8e-29  Score=204.22  Aligned_cols=226  Identities=16%  Similarity=0.221  Sum_probs=176.3

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      .+++|+  +++  +|++|. |++|+|||+.+++.++.+.  +|...|.+++|+| ++++|++|+.||+|++||+++++.+
T Consensus        29 ~~l~WS--~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           29 NLVDWS--SGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             BCEEEC--TTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEC--CCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeE
Confidence            347776  664  677765 9999999999999877664  6788899999999 8999999999999999999999999


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ..+.   +|...+.++.+.   +..+++++.++.+++|+....                      ...+..+..|...+.
T Consensus       103 ~~~~---~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A          103 RNMT---SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVA----------------------EHHVATLSGHSQEVC  154 (318)
T ss_dssp             EEEE---CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS----------------------SCEEEEEECCSSCEE
T ss_pred             EEec---CccceEEEeecC---CCEEEEEecCCceEeeecCCC----------------------ceeEEEEcCccCceE
Confidence            9998   799888877764   468999999999999998872                      234567788999999


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc------------------ccc---------------------ccc
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG------------------TAD---------------------ILQ  283 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------~~~---------------------~~~  283 (346)
                      .+.+.  ++++++++.|++|++||+++++......                  ...                     ...
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            99998  8899999999999999998765311100                  000                     000


Q ss_pred             cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117          284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                      ....+...+..+.|+|++...++++|+.|+.|++||+.+++++..+. +.+.+++++|+|||++
T Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  298 (318)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            11123456788899998853233345689999999999998766554 4566999999999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.2e-29  Score=200.24  Aligned_cols=215  Identities=15%  Similarity=0.091  Sum_probs=151.4

Q ss_pred             ccceeeeeecccCCCc-------------------------eEEEEEEeecCCCccEEEEEcC-----------------
Q 019117           20 KREYRVTNKLQEGKRP-------------------------LYAVVFNFIDSRYFNVFATVGG-----------------   57 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~-------------------------v~~~~~~p~~~~~~~~la~~~~-----------------   57 (346)
                      ..++++.+++..|..+                         |++|+|+|++..-+..+++++.                 
T Consensus        73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~  152 (356)
T 2w18_A           73 AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSG  152 (356)
T ss_dssp             SSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEES
T ss_pred             CccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecc
Confidence            3566777777777654                         4555566632222666666542                 


Q ss_pred             ---Cc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeeccCC---
Q 019117           58 ---NR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG---  128 (346)
Q Consensus        58 ---~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  128 (346)
                         ++ |++|++.. ++.+..+..     |...+..++|++.+ ++. +|++++.|++|+|||+++++.++++.+|.   
T Consensus       153 ~g~d~~V~~~~~s~dG~~~~s~~~-----~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v  226 (356)
T 2w18_A          153 TLSDQQVEVMTFAEDGGGKENQFL-----MPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ  226 (356)
T ss_dssp             SSTTCEEEEEEECTTSCEEEEEEE-----CCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred             cCCCCcEEEEEECCCCceeeeecc-----CCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence               33 77777743 444444443     55566677777533 455 99999999999999999999999998654   


Q ss_pred             CceEEEEEeCCCCceE------------EEeeCCCCEEEEecCCCeeEEEecc--cCCCCcceEEEEecCCCCcEEEEEe
Q 019117          129 DSINEIRTQPLKPSLV------------VSASKDESVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l------------~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      ..+.+++|+| ++.++            ++|+.|++|++||..+++.+..+..  ..+|...+.+..+   ++.++++++
T Consensus       227 ~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS  302 (356)
T 2w18_A          227 ASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAIL  302 (356)
T ss_dssp             CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEE
T ss_pred             eeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEc
Confidence            4677889999 77765            6788999999999999988776521  1256655544444   367899999


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEeecCeEEEEcC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~~d~~i~iwd~  267 (346)
                      .|++|++||+.+                       +..+.++.+|...+. +++|+  |++|++|+.|++|+|||+
T Consensus       303 ~DgTIkIWDl~t-----------------------Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLL-----------------------GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTT-----------------------CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECCC-----------------------CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999998                       456777888887655 58998  789999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.1e-28  Score=202.74  Aligned_cols=241  Identities=13%  Similarity=0.106  Sum_probs=177.8

Q ss_pred             ceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           35 PLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .+..+++.+    +++.+ ++++.++ |++||..+++.+..+.      +...|.++++.  ++   .++++. ++.|++
T Consensus        60 ~~~~~~~~~----~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~------~~~~v~~v~~~--~~---~~~~~~-~~~i~i  123 (355)
T 3vu4_A           60 HLSKVRMLH----RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK------VDAPVKDLFLS--RE---FIVVSY-GDVISV  123 (355)
T ss_dssp             CCCEEEECT----TSSEEEEECSSTTEEEEEETTTTEEEEEEE------CSSCEEEEEEC--SS---EEEEEE-TTEEEE
T ss_pred             CeEEEEEcC----CCCEEEEEECCccEEEEEECCCCcEEEEEE------CCCceEEEEEc--CC---EEEEEE-cCEEEE
Confidence            577888887    44555 4566655 9999999988877665      44577777664  54   444443 789999


Q ss_pred             EEccCc-ceeeeeccCCCceEEEEEeCCCCceEEE--eeCCCCEEEEecCCCe----------------eEEEecccCCC
Q 019117          113 IDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVS--ASKDESVRLWNVQTGI----------------CILIFAGAGGH  173 (346)
Q Consensus       113 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~  173 (346)
                      ||+.++ +.+..+..   +...+++++   ..++.  |+.||.|++||+++++                .+..+.   +|
T Consensus       124 ~d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h  194 (355)
T 3vu4_A          124 FKFGNPWKRITDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AH  194 (355)
T ss_dssp             EESSTTCCBSSCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CC
T ss_pred             EECCCCceeeEEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---cc
Confidence            999988 66666664   445566766   45554  6899999999999765                155666   79


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCe-EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-e-cccceEEEEec-
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-V-HSNYVDCNRWL-  249 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~-  249 (346)
                      ...|++++|+| ++.+|++++.|++ |++||+++                       ...+..+. + |...|.+++|+ 
T Consensus       195 ~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~-----------------------~~~~~~~~~g~h~~~v~~~~~s~  250 (355)
T 3vu4_A          195 TNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTED-----------------------GVLVREFRRGLDRADVVDMKWST  250 (355)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTCSEEEEEETTT-----------------------CCEEEEEECTTCCSCEEEEEECT
T ss_pred             CCceEEEEECC-CCCEEEEEeCCCCEEEEEECCC-----------------------CcEEEEEEcCCCCCcEEEEEECC
Confidence            99999999999 9999999999998 99999998                       34556666 4 99999999998 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCcccc-c----------ccc--c-cCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-I----------LQK--Y-PVPECDIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~----------~~~--~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                       +++|++++.|++|++||+............. .          ...  + .........++|++|+  .+|++++.||.
T Consensus       251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~--~~l~~~~~dg~  328 (355)
T 3vu4_A          251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES--SLVVVWPHTRM  328 (355)
T ss_dssp             TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS--EEEEEETTTTE
T ss_pred             CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC--CEEEEEeCCCe
Confidence             7899999999999999998764221110000 0          000  0 1112234678999999  78999999999


Q ss_pred             EEEEEcCCCCcc
Q 019117          315 IFVWELQSSPPV  326 (346)
Q Consensus       315 i~iwd~~~~~~~  326 (346)
                      +++|++..++..
T Consensus       329 ~~~~~~~~~~~~  340 (355)
T 3vu4_A          329 IETFKVVFDDEM  340 (355)
T ss_dssp             EEEEEEEEETTT
T ss_pred             EEEEEEEcCCCC
Confidence            999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=214.34  Aligned_cols=235  Identities=13%  Similarity=0.096  Sum_probs=173.9

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      +|...|.+++|||    +|.+||+++.++ |++|+...  .+..+. +........+.+++|+  |+|+ +|++|+.||+
T Consensus        83 ~~~~~V~~vawSP----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafS--PDG~-~LAsgs~DGt  152 (588)
T 2j04_A           83 QPVCYPRVCKPSP----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWN--PIES-SIVVGNEDGE  152 (588)
T ss_dssp             SCSCCEEEEEECS----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEEC--SSSS-CEEEEETTSE
T ss_pred             CCCCcEEEEEECC----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEc--CCCC-EEEEEcCCCE
Confidence            5688899999999    889999999999 99999433  333332 2111123458777765  9999 9999999999


Q ss_pred             EEEEEccCcce-------eeee----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCCCc
Q 019117          110 IRVIDVSNEKL-------HKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRN  175 (346)
Q Consensus       110 i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~  175 (346)
                      |++||+.++..       +.++    .+|...|.+++|+| ++  +++++.|++|++||+..++.   ..++..  +|..
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~--~h~~  227 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQN--ASRR  227 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--CCSS
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecc--cccC
Confidence            99999998753       5665    67888999999999 66  88889999999999987773   234522  5889


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe--c--CC
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--L--GD  251 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~  251 (346)
                      .|.+++|+  + ..+++++ +++|++||+...                       .......+|...|..+.|  +  +.
T Consensus       228 ~V~svaFs--g-~~LASa~-~~tIkLWd~~~~-----------------------~~~~~~~gh~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          228 KITDLKIV--D-YKVVLTC-PGYVHKIDLKNY-----------------------SISSLKTGSLENFHIIPLNHEKEST  280 (588)
T ss_dssp             CCCCEEEE--T-TEEEEEC-SSEEEEEETTTT-----------------------EEEEEECSCCSCCCEEEETTCSSCE
T ss_pred             cEEEEEEE--C-CEEEEEe-CCeEEEEECCCC-----------------------eEEEEEcCCCceEEEEEeeeCCCCC
Confidence            99999998  3 6788887 699999999872                       221222279999999999  7  56


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCC--------------CccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPG--------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      .+++++.||+ ++|..+.-...+.              ......+..+.+ ...|.+++|||||  ..+|+++.
T Consensus       281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG--~~lA~~~~  350 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDG--YSIAIVYD  350 (588)
T ss_dssp             EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTS--SEEEEEEE
T ss_pred             EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCC--CEEEEEEe
Confidence            8999999999 9999753211000              000111223333 4569999999999  67887763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=4.4e-27  Score=205.54  Aligned_cols=279  Identities=11%  Similarity=0.070  Sum_probs=203.0

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEe--ccCceeeeEeeeecCCCccceEEEEEEEcC---
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQC--LEGGVIAALQSYVDEDKEESFYTVSWACNV---   95 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---   95 (346)
                      ..++..++..+.. +..++|+|    ++++|++++.++ |.+||+  .+++.+..+.      ....+..++|  +|   
T Consensus       168 t~~~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~------~g~~p~~va~--sp~~~  234 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK------IGIEARSVES--SKFKG  234 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEEEEEE------CCSEEEEEEE--CCSTT
T ss_pred             CceEEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcEEEEEe------cCCCcceEEe--CCCcC
Confidence            3445566653333 88999999    789999988877 999999  6776666554      2344555555  58   


Q ss_pred             -CCCcEEEEee-cCCeEEEEEccCcceeeeeccC----------CC-ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117           96 -DGIPFLVAGG-INGIIRVIDVSNEKLHKSFVGH----------GD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        96 -~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                       +|+ +|++++ .+++|.+||..+++++..+..+          .. .+..+.++|++..++++...++.|.+||+.+.+
T Consensus       235 ~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          235 YEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             CTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             CCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence             999 888877 4899999999999988877642          22 788999999666778888899999999998876


Q ss_pred             eEE--EecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-
Q 019117          163 CIL--IFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-  238 (346)
Q Consensus       163 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  238 (346)
                      .+.  .+.    +...+.+++|+| ++++++ ++..+++|.+||+.+.+                       .+..+.. 
T Consensus       314 ~l~~~~i~----~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~-----------------------l~~~i~~g  365 (543)
T 1nir_A          314 NLTVTSIG----AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRR-----------------------LSALVDVG  365 (543)
T ss_dssp             SCEEEEEE----CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTE-----------------------EEEEEECS
T ss_pred             cceeEEec----cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCe-----------------------EEEeeccC
Confidence            544  343    566788999999 777655 45568999999999843                       2222322 


Q ss_pred             ---cccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--
Q 019117          239 ---HSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--  310 (346)
Q Consensus       239 ---~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--  310 (346)
                         |......+...  +..++++. .|++|.+||+.+....  ....+.++++..|...+..++|+|++  ++|++++  
T Consensus       366 ~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~~~v~~~pdg--~~l~v~~~~  441 (543)
T 1nir_A          366 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIKTHPKS--SHLYVDTTF  441 (543)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTC--CEEEECCTT
T ss_pred             CCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCceEEEcCCCC--CcEEEecCC
Confidence               54433333221  44566665 5899999999873210  01134788888888888999999999  6888876  


Q ss_pred             -----CCCcEEEEEcCCCCcc-eeeee---------eeeEEEEEecCCCCC
Q 019117          311 -----REGKIFVWELQSSPPV-LIARL---------ICFSLHVKYNPQSVY  346 (346)
Q Consensus       311 -----~dg~i~iwd~~~~~~~-~~~~~---------~~~~~~~~~spdg~~  346 (346)
                           .++.|.+||+.+++.. ..+.+         ...+.+++|+|||++
T Consensus       442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~  492 (543)
T 1nir_A          442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  492 (543)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE
T ss_pred             CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE
Confidence                 2779999999998866 33321         356889999999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.6e-27  Score=200.18  Aligned_cols=267  Identities=12%  Similarity=0.023  Sum_probs=195.6

Q ss_pred             eecccCCCceEEEEEEeec----------CCCccEEEEEcCC------c-EEEEEeccCceeeeEeeeecCCCccceEEE
Q 019117           27 NKLQEGKRPLYAVVFNFID----------SRYFNVFATVGGN------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTV   89 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~----------~~~~~~la~~~~~------~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~   89 (346)
                      ..+.+|...+..+++++.+          ...+..++.++.+      + |++||.. +.....+..     +...+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~-----~~~~v~~~  184 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHR-----SPQPLMSP  184 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEE-----ESSCEEEE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeC-----CCCcceee
Confidence            4567888878777776410          0014555555442      4 9999986 444455543     45667777


Q ss_pred             EEEEcCCCCcEEEEeecCC---eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCC--EEEEecCCCee
Q 019117           90 SWACNVDGIPFLVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLWNVQTGIC  163 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~  163 (346)
                      +|+  |+|+ +|++++.++   .|++||+.+++.. .+..|...+.+++|+| +++.|+ +++.++.  |++||+.+++.
T Consensus       185 ~~S--pdg~-~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          185 AWS--PDGS-KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI  259 (415)
T ss_dssp             EEC--TTSS-EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             EEc--CCCC-EEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE
Confidence            776  9999 999998775   9999999988765 4666888999999999 777666 7776665  99999988776


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEec-CC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                       ..+.   .|...+.+++|+| +++.|+.++. ++  .|.+||+....                        ...+..+.
T Consensus       260 -~~l~---~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~------------------------~~~l~~~~  310 (415)
T 2hqs_A          260 -RQVT---DGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA------------------------PQRITWEG  310 (415)
T ss_dssp             -EECC---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC------------------------CEECCCSS
T ss_pred             -EeCc---CCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC------------------------EEEEecCC
Confidence             4444   5888999999999 8887777665 45  57777877621                        22344466


Q ss_pred             cceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC--
Q 019117          241 NYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--  313 (346)
Q Consensus       241 ~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg--  313 (346)
                      ..+.++.|+  |++|++++.+   ..|.+||+.+++         . ..+..+. .+.+++|+||+  ++|++++.++  
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---------~-~~l~~~~-~~~~~~~spdg--~~l~~~s~~~~~  377 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---------V-QVLSSTF-LDETPSLAPNG--TMVIYSSSQGMG  377 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------E-EECCCSS-SCEEEEECTTS--SEEEEEEEETTE
T ss_pred             CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---------E-EEecCCC-CcCCeEEcCCC--CEEEEEEcCCCc
Confidence            678889998  8888888775   689999998875         2 2333443 78999999999  6788877776  


Q ss_pred             -cEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          314 -KIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       314 -~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                       .|++||+.++.........+.+.+++|+|.--|
T Consensus       378 ~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          378 SVLNLVSTDGRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             EEEEEEETTSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             cEEEEEECCCCcEEEeeCCCCCCcCCcccccccc
Confidence             799999987665555556678999999997543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=6.5e-26  Score=188.79  Aligned_cols=263  Identities=10%  Similarity=0.054  Sum_probs=196.2

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCC--------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~--------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ....+..++|+|    +++.+++++.+        .|.+||..+++....+..      ...+..++++  ++|+.++++
T Consensus        39 ~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s--~dg~~l~v~  106 (353)
T 3vgz_A           39 VGKGAYEMAYSQ----QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------DLKPFGATIN--NTTQTLWFG  106 (353)
T ss_dssp             EESSEEEEEEET----TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------SSCCCSEEEE--TTTTEEEEE
T ss_pred             hccCccceEECC----CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------CCCcceEEEC--CCCCEEEEE
Confidence            345688999999    67777766632        399999988887776653      2223445555  999844555


Q ss_pred             eecCCeEEEEEccCcceeeeeccCCCc---------eEEEEEeCCCCceEEEee--CCCCEEEEecCCCeeEEEecccCC
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGHGDS---------INEIRTQPLKPSLVVSAS--KDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                      ...++.|.+||..+++.+..+..+...         +.+++|+| +++.+++++  .++.|.+||+.+++.+..+.   .
T Consensus       107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~  182 (353)
T 3vgz_A          107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---N  182 (353)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEEC---C
T ss_pred             ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEec---C
Confidence            566799999999999988877654422         78999999 666666554  57889999999999888886   3


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee----cccceEEEEe
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV----HSNYVDCNRW  248 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~  248 (346)
                      +...+.+++|+| +++.+++++.++.|.+||+.+.+                       ....+..    +...+..+.|
T Consensus       183 ~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          183 TGKMSTGLALDS-EGKRLYTTNADGELITIDTADNK-----------------------ILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             CCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTE-----------------------EEEEEECCCSSSCCCEEEEEE
T ss_pred             CCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCe-----------------------EEEEEEcCCCCCCcccceEEE
Confidence            556688999999 88888888889999999998733                       2222222    3455777888


Q ss_pred             c--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          249 L--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       249 ~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      +  ++++++++. ++.|.+||+.+++         .+..+....  ...++|+|+++ .++++...++.|.+||+.+++.
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~--~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGN---------ILAKVAAPE--SLAVLFNPARN-EAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCC---------EEEEEECSS--CCCEEEETTTT-EEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCC--CceEEECCCCC-EEEEEECCCCeEEEEECCCCeE
Confidence            7  776666654 5999999998876         333333332  25689999994 3556666899999999999987


Q ss_pred             ceeeeeeeeEEEEEecCCCCC
Q 019117          326 VLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       326 ~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +........+..++|+|||++
T Consensus       307 ~~~~~~~~~~~~~~~s~dg~~  327 (353)
T 3vgz_A          307 VKTFDTPTHPNSLALSADGKT  327 (353)
T ss_dssp             EEEEECCSEEEEEEECTTSCE
T ss_pred             EEEEecCCCCCeEEEcCCCCE
Confidence            777777778899999999973

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.5e-25  Score=190.17  Aligned_cols=260  Identities=8%  Similarity=0.016  Sum_probs=185.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEc----CC-----cEEEEEe--ccCceeee--EeeeecCCCccceEEEEEEEc------
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVG----GN-----RVTVYQC--LEGGVIAA--LQSYVDEDKEESFYTVSWACN------   94 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~----~~-----~v~i~~~--~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~------   94 (346)
                      ..+...+|.+.   ...++++|+    .+     .+++||+  .+++.+..  +..     +...+..+++.+.      
T Consensus        63 ~~~~~~~w~~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~  134 (415)
T 2hqs_A           63 QEVQPAAWSAL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV-----NKQWLRYAGHTASDEVFEK  134 (415)
T ss_dssp             GGCCHHHHHTT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE-----CGGGHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHhc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc-----ChhHHHHHHHHHHHHHHHH
Confidence            35666677662   235676775    23     3999999  88876532  333     3334443333311      


Q ss_pred             ------CCCCcEEEEeecC------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC---CEEEEecC
Q 019117           95 ------VDGIPFLVAGGIN------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQ  159 (346)
Q Consensus        95 ------~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~  159 (346)
                            +.+. .++.++.+      +.|++||+.. .....+..|...+.+++|+| +++.|++++.++   .|++||+.
T Consensus       135 ~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~  211 (415)
T 2hqs_A          135 LTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLA  211 (415)
T ss_dssp             HHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred             HcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECC
Confidence                  1244 56555544      7999999874 55677778999999999999 889999998875   99999999


Q ss_pred             CCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCe--EEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      +++... +.   .|...+.+++|+| +++.|+ +++.++.  |.+||+.+.                        ....+
T Consensus       212 tg~~~~-l~---~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~------------------------~~~~l  262 (415)
T 2hqs_A          212 NGAVRQ-VA---SFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG------------------------QIRQV  262 (415)
T ss_dssp             TCCEEE-EE---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC------------------------CEEEC
T ss_pred             CCcEEE-ee---cCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC------------------------CEEeC
Confidence            888764 44   4788999999999 777666 6666654  999999872                        12455


Q ss_pred             eecccceEEEEec--CCEEEEEee-cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117          237 SVHSNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  311 (346)
Q Consensus       237 ~~~~~~i~~~~~~--~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  311 (346)
                      ..|...+.++.|+  |++|+.++. ++  .|.+||+.+++          ...+..+...+..++|+||+  ++|++++.
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG--~~l~~~~~  330 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDG--KFMVMVSS  330 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTS--SEEEEEEE
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCC--CEEEEEEC
Confidence            6677889999998  778888776 44  67778888764          22334455678899999999  67777765


Q ss_pred             C---CcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          312 E---GKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       312 d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +   ..|++||+.+++....... ..+..++|+|||++
T Consensus       331 ~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~  367 (415)
T 2hqs_A          331 NGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTM  367 (415)
T ss_dssp             CSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSE
T ss_pred             cCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCE
Confidence            3   5899999999876433322 36788999999973

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=6.7e-25  Score=177.90  Aligned_cols=242  Identities=12%  Similarity=0.152  Sum_probs=176.1

Q ss_pred             cCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceeeeeccC-CCceE
Q 019117           56 GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGH-GDSIN  132 (346)
Q Consensus        56 ~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~  132 (346)
                      +.++ |++||+.+++......      +...+.+++|+  |+|+ +|++++ ++.|.+||+.+ ++.......+ ...+.
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~------~~~~v~~~~~s--pdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQ------TPELFEAPNWS--PDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEE------ESSCCEEEEEC--TTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             CcceeEEEEeCCCCceeeecc------CCcceEeeEEC--CCCC-EEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence            3455 9999988776554333      45677777776  9999 888876 88999999999 8777666655 46789


Q ss_pred             EEEEeCCCCceEEEee--CCCCEEEEec--CCCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEcccc
Q 019117          133 EIRTQPLKPSLVVSAS--KDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEF  207 (346)
Q Consensus       133 ~~~~~~~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~  207 (346)
                      +++|+| ++++|++++  .++...||.+  ..++ ...+.    +...+..++|+| ++..++ ++..++.+++|++...
T Consensus        89 ~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           89 DHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT----KNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECC----SSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred             ceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEee----cCCCccceEECC-CCCEEEEEECCCCceEEEEEECC
Confidence            999999 888888888  3345556554  4444 34443    334589999999 666555 8888999999997641


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCCCCCCcccccccc
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQK  284 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  284 (346)
                      .                      .....+..+...+.++.|+  +++++.++ .++.+++|+++....        .+..
T Consensus       162 ~----------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--------~~~~  211 (297)
T 2ojh_A          162 S----------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--------SVER  211 (297)
T ss_dssp             T----------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------CEEE
T ss_pred             C----------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--------CcEE
Confidence            1                      1233455677788999998  77777665 589999999863221        3455


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcCC-----------CcEEEEEcCCCCcceeeeee---eeEEEEEecCCCCC
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNRE-----------GKIFVWELQSSPPVLIARLI---CFSLHVKYNPQSVY  346 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~---~~~~~~~~spdg~~  346 (346)
                      +..+...+..++|+|++  ++|++++.+           +.|++||+.+++........   ..+..++|+|||++
T Consensus       212 ~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          212 ITDSAYGDWFPHPSPSG--DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             CCCCSEEEEEEEECTTS--SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             EecCCcccCCeEECCCC--CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            56667788999999999  677777665           56999999998765555443   34778999999974

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=5.4e-24  Score=186.04  Aligned_cols=259  Identities=11%  Similarity=0.072  Sum_probs=188.6

Q ss_pred             EEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc--c
Q 019117           40 VFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV--S  116 (346)
Q Consensus        40 ~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~  116 (346)
                      +|+|    ++.++++++.++ |.+||..+++.+..+..      ...+..+++  +|+|+ +|++++.|+.|.+||+  .
T Consensus       144 ~~~p----~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~------g~~~~~v~~--spdg~-~l~v~~~d~~V~v~D~~~~  210 (543)
T 1nir_A          144 DLDL----PNLFSVTLRDAGQIALVDGDSKKIVKVIDT------GYAVHISRM--SASGR-YLLVIGRDARIDMIDLWAK  210 (543)
T ss_dssp             CCCG----GGEEEEEEGGGTEEEEEETTTCCEEEEEEC------STTEEEEEE--CTTSC-EEEEEETTSEEEEEETTSS
T ss_pred             ccCC----CCEEEEEEcCCCeEEEEECCCceEEEEEec------CcccceEEE--CCCCC-EEEEECCCCeEEEEECcCC
Confidence            3777    678889988887 99999999888777762      122555555  49999 9999999999999999  8


Q ss_pred             CcceeeeeccCCCceEEEEEeC----CCCceEEEee-CCCCEEEEecCCCeeEEEecccCC-------C-CcceEEEEec
Q 019117          117 NEKLHKSFVGHGDSINEIRTQP----LKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGG-------H-RNEVLSVDFH  183 (346)
Q Consensus       117 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~-------~-~~~v~~~~~~  183 (346)
                      +++.+..+. +...+..++|+|    + ++++++++ .+++|.+||..+++++..+.....       | ...+.++.++
T Consensus       211 t~~~~~~i~-~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          211 EPTKVAEIK-IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             SCEEEEEEE-CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CCcEEEEEe-cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence            888888887 455679999998    5 45666665 589999999999999888763110       2 2378999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecC
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDN  260 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~  260 (346)
                      |++..++++...++.|.+||+.....                     ..+..+ .+...+..+.|+  +++++++ ..++
T Consensus       289 ~~~~~~~vs~~~~g~i~vvd~~~~~~---------------------l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~  346 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVLLVNYKDIDN---------------------LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSN  346 (543)
T ss_dssp             SSSSEEEEEETTTTEEEEEECTTSSS---------------------CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred             CCCCEEEEEECCCCeEEEEEecCCCc---------------------ceeEEe-ccCcCccCceECCCCCEEEEEecCCC
Confidence            96677788888899999999987321                     011122 245567778887  7776655 4589


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccC----CCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCC-------CCccee
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQS-------SPPVLI  328 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~-------~~~~~~  328 (346)
                      +|.+||+.+++         ++..+..    |.+....+ ++|++. .+++++. .|++|.+||+.+       .+.+..
T Consensus       347 ~v~v~D~~tg~---------l~~~i~~g~~ph~g~g~~~-~~p~~g-~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          347 KVAVIDSKDRR---------LSALVDVGKTPHPGRGANF-VHPKYG-PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEETTTTE---------EEEEEECSSSBCCTTCEEE-EETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             eEEEEECCCCe---------EEEeeccCCCCCCCCCccc-CCCCCc-cEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            99999999886         3444432    33333333 467743 5777775 689999999998       555555


Q ss_pred             eeeee-eEEEEEecCCCCC
Q 019117          329 ARLIC-FSLHVKYNPQSVY  346 (346)
Q Consensus       329 ~~~~~-~~~~~~~spdg~~  346 (346)
                      ....+ .+..++|+|||++
T Consensus       416 l~~~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             EECSCSCCCCEECCTTCCE
T ss_pred             EEcCCCCceEEEcCCCCCc
Confidence            44432 3577999999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=3.6e-24  Score=182.36  Aligned_cols=261  Identities=15%  Similarity=0.140  Sum_probs=168.8

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce----------eeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV----------IAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +...++.+++++    ++.++++++.+++++|+......          ...........+...|.+++|+  |+|+ +|
T Consensus        35 ~~~~~n~lavs~----~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~-~l  107 (434)
T 2oit_A           35 PKERSSLLAVSN----KYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS--CDNL-TL  107 (434)
T ss_dssp             CCSCCBCEEEET----TTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC--TTSC-EE
T ss_pred             CCCCccEEEEec----CCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc--CCCC-EE
Confidence            344688999998    67889999888999988643211          0100000001134568777776  9998 88


Q ss_pred             E----EeecCCeEEEEEccCc--------ce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117          102 V----AGGINGIIRVIDVSNE--------KL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus       102 ~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                      +    +|+.|+.|++||+.++        +.   +..+.+|...|.+++|+|.++.+|++++.||+|++||++++..+..
T Consensus       108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence            8    7889999999998765        21   4556679999999999995488999999999999999998877665


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      ..   +|...|++++|+| ++.+|++|+.||.|++||++. ........                +......|...|.++
T Consensus       188 ~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-~~~~~~~~----------------~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          188 TL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-QEKKVIPC----------------PPFYESDHPVRVLDV  246 (434)
T ss_dssp             EE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-CEEEEECC----------------CTTCCTTSCEEEEEE
T ss_pred             cc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-cccccccC----------------CcccCCCCceeEEEE
Confidence            55   6889999999999 899999999999999999983 11000000                000001234478999


Q ss_pred             Eec-CC-EEEE-EeecC------eEEEEcCCCCCCCCCC---ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117          247 RWL-GD-FILS-KSVDN------EIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       247 ~~~-~~-~l~~-~~~d~------~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                      .|+ .. ++++ ...||      .+++|++...+.....   ....+...+.+...+-..+..-++.+ .++++.+..+.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~-l~~v~s~~s~d  325 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWD-LVLAASAASTE  325 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGT-EEEEEETTCSB
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCC-EEEEecCCCCc
Confidence            998 33 3333 22332      3999999865321110   01111111112222333344446663 45555555666


Q ss_pred             EEEEEcC
Q 019117          315 IFVWELQ  321 (346)
Q Consensus       315 i~iwd~~  321 (346)
                      |.+....
T Consensus       326 v~vl~~~  332 (434)
T 2oit_A          326 VSILARQ  332 (434)
T ss_dssp             CEEEEEC
T ss_pred             eeEEEec
Confidence            7776643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=2.1e-23  Score=172.11  Aligned_cols=256  Identities=10%  Similarity=0.024  Sum_probs=176.2

Q ss_pred             ccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-CCeEEEEEccCcce-eeeec
Q 019117           49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKL-HKSFV  125 (346)
Q Consensus        49 ~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~  125 (346)
                      +.++++++.++ |.+||..+++....+..     +.... .++|  +|+|+ ++++++. ++.|.+||+.+++. ...+.
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~-~~~~--s~dg~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITL-----GYDFV-DTAI--TSDCS-NVVVTSDFCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CCCEE-EEEE--CSSSC-EEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEc-----cCCcc-eEEE--cCCCC-EEEEEeCCCCeEEEEECCCCceeEEecc
Confidence            45677777776 99999988887666552     23333 4554  59998 5555554 88999999999987 77777


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCC---CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc-EEEEEecCCe-EE
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNT-VK  200 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~-i~  200 (346)
                      .+..+..+++|+| ++++++++..++   .|.+||+.+++.+..+.    ....+.+++|+| +++ ++++...++. |.
T Consensus        81 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~  154 (331)
T 3u4y_A           81 EGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----IPYDAVGIAISP-NGNGLILIDRSSANTVR  154 (331)
T ss_dssp             ECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----CCTTEEEEEECT-TSSCEEEEEETTTTEEE
T ss_pred             cCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEE----CCCCccceEECC-CCCEEEEEecCCCceEE
Confidence            7777666699999 888888665553   89999999999888876    455679999999 665 5555566688 99


Q ss_pred             EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCc
Q 019117          201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEG  277 (346)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~  277 (346)
                      +|++........                  .. ............+.|+  ++++++ +..++.|.+||+.+++.     
T Consensus       155 ~~~~~~~g~~~~------------------~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----  210 (331)
T 3u4y_A          155 RFKIDADGVLFD------------------TG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----  210 (331)
T ss_dssp             EEEECTTCCEEE------------------EE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----
T ss_pred             EEEECCCCcEee------------------cC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----
Confidence            999875211000                  00 1111334456788888  665544 45689999999987762     


Q ss_pred             cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee----------EEEEEecCCCCC
Q 019117          278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF----------SLHVKYNPQSVY  346 (346)
Q Consensus       278 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~spdg~~  346 (346)
                       ...+..+..+ ..+..++|+||++ .++++...++.|.+||+.+++..........          ...++|+|||++
T Consensus       211 -~~~~~~~~~~-~~~~~~~~spdg~-~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  286 (331)
T 3u4y_A          211 -ITLLNAVGTN-NLPGTIVVSRDGS-TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK  286 (331)
T ss_dssp             -CEEEEEEECS-SCCCCEEECTTSS-EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred             -cceeeeccCC-CCCceEEECCCCC-EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence             0114444433 5678899999994 2444555688999999999876332222211          234899999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.8e-23  Score=172.04  Aligned_cols=260  Identities=11%  Similarity=0.063  Sum_probs=166.3

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-CeEEEEEcc--Ccc--eeee
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-GIIRVIDVS--NEK--LHKS  123 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~  123 (346)
                      .++++++.++ |.+|++........+....   +...+..++|+  |+|+ +|++++.+ +.|.+|++.  +++  .+..
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s--pdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVD---VPGQVQPMVVS--PDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSCCCCEEEC--TTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEe---cCCCCceEEEC--CCCC-EEEEeecCCCeEEEEEecCCCCceeeccc
Confidence            4555546555 9999986433333333221   44456666665  9998 78888776 999999997  554  3444


Q ss_pred             eccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecC---CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCe
Q 019117          124 FVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQ---TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT  198 (346)
Q Consensus       124 ~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~  198 (346)
                      +..+. .+..++|+| +++++++++ .++.|.+||+.   ..+.+..+.    ....+.+++|+| +++++++++ .++.
T Consensus        80 ~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~  152 (343)
T 1ri6_A           80 SALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISP-DNRTLWVPALKQDR  152 (343)
T ss_dssp             EECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECT-TSSEEEEEEGGGTE
T ss_pred             cccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc----CCCCceEEEECC-CCCEEEEecCCCCE
Confidence            55444 789999999 777665554 58899999994   334444444    345688999999 777677666 8999


Q ss_pred             EEEEEccc-cceeeeeceeecCCCCCCCCccceeceE--EEee-cccceEEEEec--CCEEEEE-eecCeEEEEcCCCCC
Q 019117          199 VKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVF--IASV-HSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKE  271 (346)
Q Consensus       199 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~  271 (346)
                      |.+||+.. ....                     ...  .... ....+..+.|+  +++++++ ..++.|.+|+++...
T Consensus       153 v~~~d~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~  211 (343)
T 1ri6_A          153 ICLFTVSDDGHLV---------------------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH  211 (343)
T ss_dssp             EEEEEECTTSCEE---------------------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred             EEEEEecCCCcee---------------------eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            99999976 2210                     011  1122 23457778887  6666555 478999999996421


Q ss_pred             CCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC--CCCccee--eeeeeeEEEEEecCCC
Q 019117          272 QSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLI--ARLICFSLHVKYNPQS  344 (346)
Q Consensus       272 ~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~--~~~~~~~~~~~~spdg  344 (346)
                      ....  .......+..   ....+..++|+|+++ .+++++..++.|.+||+.  +++....  ......+..++|+|||
T Consensus       212 g~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  288 (343)
T 1ri6_A          212 GNIE--CVQTLDMMPENFSDTRWAADIHITPDGR-HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG  288 (343)
T ss_dssp             SCCE--EEEEEECSCTTCCSCCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred             CcEE--EEeeccccCccccccCCccceEECCCCC-EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCC
Confidence            1000  0001111111   123567899999994 244466789999999998  3333222  2333447789999999


Q ss_pred             CC
Q 019117          345 VY  346 (346)
Q Consensus       345 ~~  346 (346)
                      ++
T Consensus       289 ~~  290 (343)
T 1ri6_A          289 KY  290 (343)
T ss_dssp             SE
T ss_pred             CE
Confidence            73

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.1e-22  Score=168.42  Aligned_cols=274  Identities=12%  Similarity=0.100  Sum_probs=175.3

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCC-c-EEEEEec--cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGN-R-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-  105 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~-~-v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-  105 (346)
                      .|...+.+++|+|    ++++|++++.+ + |.+|++.  ++.. ..+..+..   ...+..++|+  |+|+ +|++++ 
T Consensus        35 ~~~~~~~~~~~sp----dg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~s--~dg~-~l~~~~~  103 (343)
T 1ri6_A           35 DVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESAL---PGSLTHISTD--HQGQ-FVFVGSY  103 (343)
T ss_dssp             ECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEEC---SSCCSEEEEC--TTSS-EEEEEET
T ss_pred             ecCCCCceEEECC----CCCEEEEeecCCCeEEEEEecCCCCce-eecccccc---CCCCcEEEEc--CCCC-EEEEEec
Confidence            4677899999999    77877777764 4 9999987  4332 22322221   2245556655  9998 665555 


Q ss_pred             cCCeEEEEEc---cCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCC-CeeEE----EecccCCCCcc
Q 019117          106 INGIIRVIDV---SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GICIL----IFAGAGGHRNE  176 (346)
Q Consensus       106 ~dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~  176 (346)
                      .++.|.+||+   .+.+.+..+..+ ..+.+++|+| +++.+++++ .++.|.+||+.+ ++...    .+..  .....
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~  179 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--VEGAG  179 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--STTCC
T ss_pred             CCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeeccccccc--CCCCC
Confidence            5889999999   444455555543 4588999999 777777666 889999999987 54432    2221  23457


Q ss_pred             eEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe---ecccceEEEEec--C
Q 019117          177 VLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS---VHSNYVDCNRWL--G  250 (346)
Q Consensus       177 v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~--~  250 (346)
                      +.+++|+| ++.++ +++..++.|.+||+..........                .....+.   .....+..++|+  +
T Consensus       180 ~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~----------------~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          180 PRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECV----------------QTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             EEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEE----------------EEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             cceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEE----------------eeccccCccccccCCccceEECCCC
Confidence            88999999 67655 455588999999996411100000                0000000   012346678888  6


Q ss_pred             CEEE-EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcC--CCCcc
Q 019117          251 DFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQ--SSPPV  326 (346)
Q Consensus       251 ~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~  326 (346)
                      ++|+ +...++.|.+||+.....     ....+..+..+. .+..++|+|++  ++|++++ .++.|.+|++.  +++..
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~~~~v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGS-----VLSKEGFQPTET-QPRGFNVDHSG--KYLIAAGQKSHHISVYEIVGEQGLLH  314 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSS-SCCCEEECTTS--SEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCC-----ceEEeeeecCCC-ccceEEECCCC--CEEEEecCCCCeEEEEEEcCCCceee
Confidence            6666 445799999999983210     111333444343 38889999999  5566665 68999999554  55443


Q ss_pred             eeee--eeeeEEEEEecCCC
Q 019117          327 LIAR--LICFSLHVKYNPQS  344 (346)
Q Consensus       327 ~~~~--~~~~~~~~~~spdg  344 (346)
                      ....  ....+.+++|.|+.
T Consensus       315 ~~~~~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          315 EKGRYAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEEECSSSCCEEEEEEEC
T ss_pred             EccccccCCCCeeEEEEccc
Confidence            3333  33457788888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.4e-23  Score=191.71  Aligned_cols=262  Identities=11%  Similarity=0.003  Sum_probs=185.1

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .|.+++|||    +|++|++++.+.|.+||+.++.  ....+..     +...+..++|+  |||+ +|+.++ ++.|.+
T Consensus       110 ~v~~~~~Sp----Dg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~S--PDG~-~la~~~-~~~i~~  176 (741)
T 2ecf_A          110 GIVDYQWSP----DAQRLLFPLGGELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLS--PKGG-FVSFIR-GRNLWV  176 (741)
T ss_dssp             ESCCCEECT----TSSEEEEEETTEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEEC--TTSS-EEEEEE-TTEEEE
T ss_pred             CcceeEECC----CCCEEEEEeCCcEEEEECCCCCcceEEEccc-----CCcccccccCC--CCCC-EEEEEe-CCcEEE
Confidence            488999999    8899999988779999988772  2222321     44567767666  9999 888887 569999


Q ss_pred             EEccCcceeeeeccCCCc----------------eEEEEEeCCCCceEEEeeCCC-------------------------
Q 019117          113 IDVSNEKLHKSFVGHGDS----------------INEIRTQPLKPSLVVSASKDE-------------------------  151 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~d~-------------------------  151 (346)
                      ||+.+++.......+...                +..++|+| +++.|++++.|+                         
T Consensus       177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             EecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence            999988766555444332                47899999 888888887665                         


Q ss_pred             --------CEEEEecCC-CeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceee
Q 019117          152 --------SVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTW  217 (346)
Q Consensus       152 --------~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~  217 (346)
                              .|.+||+.+ ++...... ...|...+..++| | +++.|+.++.     +..|.+||+.+.+         
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~---------  323 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDL-GKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQ---------  323 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECC-CSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCC---------
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecC-CCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCc---------
Confidence                    789999988 77554432 1137788999999 9 7777776653     5679999998732         


Q ss_pred             cCCCCCCCCccceeceEEEeeccc----ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC
Q 019117          218 TDLPSKFPTKYVQFPVFIASVHSN----YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  291 (346)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  291 (346)
                                    .......+..    .+..+.|+  |+++++++.|+.++||.++...        . ...+..+...
T Consensus       324 --------------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~  380 (741)
T 2ecf_A          324 --------------QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--------K-AAALTHGNWS  380 (741)
T ss_dssp             --------------EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--------C-EEESCCSSSC
T ss_pred             --------------eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--------C-eeeeeecceE
Confidence                          2222333332    34567787  7788888999988888776322        1 3445556667


Q ss_pred             eeEE-EEeecCCcceEEEEcCCC--cEEEEEcCC-CCcceeeeeeeeEEEEEecCCCCC
Q 019117          292 IWFI-KFSCDFHYNAAAIGNREG--KIFVWELQS-SPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       292 v~~~-~~s~~~~~~~l~~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +..+ .|+|+++ .++++++.++  .++||++.. +...........+..++|||||++
T Consensus       381 v~~~~~~s~dg~-~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~  438 (741)
T 2ecf_A          381 VDELLAVDEKAG-LAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASV  438 (741)
T ss_dssp             EEEEEEEETTTT-EEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSE
T ss_pred             EEeEeEEeCCCC-EEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCE
Confidence            8777 5999994 3445666666  899999865 443333333445778999999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.6e-23  Score=190.23  Aligned_cols=263  Identities=9%  Similarity=0.060  Sum_probs=181.1

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      ..|.+++|+|    + ..++.+.++.+.+||+.+++......      +...+..++|+  |||+ +|+++ .++.|.+|
T Consensus        82 ~~v~~~~~sp----d-~~~~~~~~~~i~~~d~~~~~~~~l~~------~~~~~~~~~~S--pdG~-~la~~-~~~~i~v~  146 (706)
T 2z3z_A           82 FPSFRTLDAG----R-GLVVLFTQGGLVGFDMLARKVTYLFD------TNEETASLDFS--PVGD-RVAYV-RNHNLYIA  146 (706)
T ss_dssp             CCCEEEEETT----T-TEEEEEETTEEEEEETTTTEEEEEEC------CTTCCTTCEEC--TTSS-EEEEE-ETTEEEEE
T ss_pred             cCceeEEECC----C-CeEEEEECCEEEEEECCCCceEEccC------CcccccCCcCC--CCCC-EEEEE-ECCeEEEE
Confidence            5699999999    6 45555555669999988765543322      23345556665  9999 88885 68999999


Q ss_pred             EccC-----cceeeeeccCCCc--------------eEEEEEeCCCCceEEEee--------------------------
Q 019117          114 DVSN-----EKLHKSFVGHGDS--------------INEIRTQPLKPSLVVSAS--------------------------  148 (346)
Q Consensus       114 d~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~s~~--------------------------  148 (346)
                      |+.+     ++.......+...              +.++.|+| ++++|++++                          
T Consensus       147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y  225 (706)
T 2z3z_A          147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY  225 (706)
T ss_dssp             ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred             ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence            9998     7766544444332              48999999 888888887                          


Q ss_pred             -------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeecee
Q 019117          149 -------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFT  216 (346)
Q Consensus       149 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~  216 (346)
                             .+..|.+||+.+++...... ...|...+.+++|+| +++.|++++.++     .|.+||+.+.+..      
T Consensus       226 ~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~------  297 (706)
T 2z3z_A          226 PMAGTPSHHVTVGIYHLATGKTVYLQT-GEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFV------  297 (706)
T ss_dssp             CBTTSCCCEEEEEEEETTTTEEEECCC-CSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEE------
T ss_pred             CCCCCCCCeeEEEEEECCCCceEeecc-CCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCcee------
Confidence                   44679999999887654432 114667899999999 888888877775     8999999874110      


Q ss_pred             ecCCCCCCCCccceeceEEEeeccc---ceEEEEec----CCEEEEEeecCeEEEEcCC-CCCCCCCCccccccccccCC
Q 019117          217 WTDLPSKFPTKYVQFPVFIASVHSN---YVDCNRWL----GDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~----~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~  288 (346)
                                    ..+. ...+..   .+.++.|+    |+++++++.|+.++||+++ +++         .+..+..+
T Consensus       298 --------------~~~~-~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---------~~~~l~~~  353 (706)
T 2z3z_A          298 --------------RTLF-VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---------LIRQVTKG  353 (706)
T ss_dssp             --------------EEEE-EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---------EEEECCCS
T ss_pred             --------------eEEE-EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---------EEEecCCC
Confidence                          0000 011111   12345553    5688888889999999876 332         44555666


Q ss_pred             CcCeeE-EEEeecCCcceEEEEcCCC----cEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          289 ECDIWF-IKFSCDFHYNAAAIGNREG----KIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       289 ~~~v~~-~~~s~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ...+.. ++|+|+++ .++++++.++    .|+.||+.+++.. .......+..++|||||++
T Consensus       354 ~~~v~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~  414 (706)
T 2z3z_A          354 EWEVTNFAGFDPKGT-RLYFESTEASPLERHFYCIDIKGGKTK-DLTPESGMHRTQLSPDGSA  414 (706)
T ss_dssp             SSCEEEEEEECTTSS-EEEEEESSSCTTCBEEEEEETTCCCCE-ESCCSSSEEEEEECTTSSE
T ss_pred             CeEEEeeeEEcCCCC-EEEEEecCCCCceEEEEEEEcCCCCce-eccCCCceEEEEECCCCCE
Confidence            667776 79999994 3445555555    6777888777633 3334455788999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3e-22  Score=165.18  Aligned_cols=283  Identities=11%  Similarity=0.029  Sum_probs=173.9

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ++...+..+...+ +++|+|    +++++++++. ++ |.+||..+++. ...+..     +.....+++|  +|+|+ +
T Consensus        31 ~~~~~~~~~~~~~-~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~--s~dg~-~   97 (331)
T 3u4y_A           31 EILNQITLGYDFV-DTAITS----DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-----GQSSMADVDI--TPDDQ-F   97 (331)
T ss_dssp             CEEEEEECCCCEE-EEEECS----SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-----CSSCCCCEEE--CTTSS-E
T ss_pred             ceeeeEEccCCcc-eEEEcC----CCCEEEEEeCCCCeEEEEECCCCceeEEeccc-----CCCCccceEE--CCCCC-E
Confidence            3444444556666 999999    6775555444 44 99999988876 444442     2222222455  59999 7


Q ss_pred             EEEeecCC---eEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCC-EEEEecCCCeeEEEe-cccCCCC
Q 019117          101 LVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDES-VRLWNVQTGICILIF-AGAGGHR  174 (346)
Q Consensus       101 l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~-i~iwd~~~~~~~~~~-~~~~~~~  174 (346)
                      |+++..++   .|.+||+.+++.+..+..+ ....+++|+| +++ ++++...++. |.+|++.....+... .......
T Consensus        98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  175 (331)
T 3u4y_A           98 AVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG  175 (331)
T ss_dssp             EEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred             EEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence            87665553   8999999999988877644 4568999999 665 5555566688 999998754333111 0000245


Q ss_pred             cceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117          175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD  251 (346)
Q Consensus       175 ~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  251 (346)
                      ..+..++|+| +++ +++++..++.|.+||+.+.+.                    ...+..+. ....+..++|+  |+
T Consensus       176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~--------------------~~~~~~~~-~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPEN--------------------ITLLNAVG-TNNLPGTIVVSRDGS  233 (331)
T ss_dssp             SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTS--------------------CEEEEEEE-CSSCCCCEEECTTSS
T ss_pred             CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcc--------------------cceeeecc-CCCCCceEEECCCCC
Confidence            5689999999 776 455566789999999987321                    00122333 23556778887  77


Q ss_pred             EEEEE-eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          252 FILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       252 ~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      +++++ ..++.|.+||+.+++..........+............++|+||++ .+++++..++.|.+||+.+........
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~d~~~~~~~~~~~  312 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET-KLFISANISRELKVFTISGKVVGYVAG  312 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS-EEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred             EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC-EEEEecCCCCcEEEEEecCCcccceec
Confidence            66555 4588899999988752100000000000011111225689999994 244566677899999998765333333


Q ss_pred             eeeeEEEEEecCCC
Q 019117          331 LICFSLHVKYNPQS  344 (346)
Q Consensus       331 ~~~~~~~~~~spdg  344 (346)
                      +........++|++
T Consensus       313 ~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          313 IEANGGIAICHPDK  326 (331)
T ss_dssp             CCCBSCEEECCCC-
T ss_pred             ccccCCeEEECCcc
Confidence            33222235555654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.4e-23  Score=190.05  Aligned_cols=267  Identities=12%  Similarity=0.043  Sum_probs=181.6

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcC-C------cEEEEEeccCceeeeEeeeecCC----------C---------ccce
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGG-N------RVTVYQCLEGGVIAALQSYVDED----------K---------EESF   86 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~-~------~v~i~~~~~~~~~~~~~~~~~~~----------~---------~~~v   86 (346)
                      ...|.+++|+|    +|++|++++. +      .|.+||+.+++....+.......          .         ...+
T Consensus        36 ~~~~~~~~~Sp----dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAP----DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECT----TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEec----CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            55799999999    8899998876 4      39999998887655544211000          0         0224


Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      ..++|  +|||+ +|++++. +.|.+||+.+++  ....+..|...+..++|+| +++.|+.++. +.|++||+.+++..
T Consensus       112 ~~~~~--SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          112 VDYQW--SPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGRQM  185 (741)
T ss_dssp             CCCEE--CTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTEEE
T ss_pred             ceeEE--CCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCCEE
Confidence            44555  49999 8888885 999999999873  4455667888899999999 8888888874 68999999988766


Q ss_pred             EEecccCCCCcc----------------eEEEEecCCCCcEEEEEecCC-------------------------------
Q 019117          165 LIFAGAGGHRNE----------------VLSVDFHPSDIYRIASCGMDN-------------------------------  197 (346)
Q Consensus       165 ~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~d~-------------------------------  197 (346)
                      ....   .+...                +.+++|+| ++++|++++.|+                               
T Consensus       186 ~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          186 QLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             ECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             Eecc---CCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            5443   22221                47899999 888888877665                               


Q ss_pred             --eEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEee-----cCeEEEEcCC
Q 019117          198 --TVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV-----DNEIVLWEPK  268 (346)
Q Consensus       198 --~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~-----d~~i~iwd~~  268 (346)
                        .|.+||+.+ .+...                     +.....|...+..+.|. |++|+.++.     +..|++||+.
T Consensus       262 ~~~l~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQW---------------------IDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             EEEEEEECSSTTCCCEE---------------------ECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             eeEEEEEECCCCCceEE---------------------ecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECC
Confidence              667777654 32100                     00001355667777763 678887654     6789999998


Q ss_pred             CCCCCCCCccccccccccCCCc----CeeEEEEeecCCcceEEEEcCCCcEEEEEcC-CCCcceeeeeeeeEEEE-EecC
Q 019117          269 MKEQSPGEGTADILQKYPVPEC----DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLICFSLHV-KYNP  342 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~-~~sp  342 (346)
                      +++         ....+..+..    .+..++|+||+  +++++++.||.++||.+. ++...........+..+ .|+|
T Consensus       321 ~g~---------~~~~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          321 SNQ---------QRVLAHETSPTWVPLHNSLRFLDDG--SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             TCC---------EEEEEEEECSSCCCCCSCCEECTTS--CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEET
T ss_pred             CCc---------eEEEEEcCCCCcCCcCCceEECCCC--eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeC
Confidence            876         2222222221    34678999999  688889999988888765 23322222223345666 5999


Q ss_pred             CCC
Q 019117          343 QSV  345 (346)
Q Consensus       343 dg~  345 (346)
                      ||+
T Consensus       390 dg~  392 (741)
T 2ecf_A          390 KAG  392 (741)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=4.2e-23  Score=167.28  Aligned_cols=236  Identities=9%  Similarity=-0.076  Sum_probs=167.1

Q ss_pred             ecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-  105 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-  105 (346)
                      .+..|...|.+++|+|    ++++|++++.+.|.+||+.+ ++.......    .+...+.+++|+  |+|+ +|++++ 
T Consensus        36 ~~~~~~~~v~~~~~sp----dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~s--pdg~-~l~~~~~  104 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSP----DGKYLLLNSEGLLYRLSLAGDPSPEKVDTG----FATICNNDHGIS--PDGA-LYAISDK  104 (297)
T ss_dssp             EEEEESSCCEEEEECT----TSSEEEEEETTEEEEEESSSCCSCEECCCT----TCCCBCSCCEEC--TTSS-EEEEEEC
T ss_pred             eeccCCcceEeeEECC----CCCEEEEEcCCeEEEEeCCCCCCceEeccc----cccccccceEEC--CCCC-EEEEEEe
Confidence            4556889999999999    78999999877799999988 665443322    123456666665  9999 888888 


Q ss_pred             -cCCeEEEEEc--cCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCCEEEEecCC-CeeEEEecccCCCCcceEEE
Q 019117          106 -INGIIRVIDV--SNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 -~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~  180 (346)
                       .++...||.+  .+++ ...+..+ ..+..++|+| +++.|+ +++.++.+.+|+++. +.....+.   .+...+.++
T Consensus       105 ~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~  178 (297)
T 2ojh_A          105 VEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLT---HGEGRNDGP  178 (297)
T ss_dssp             TTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECC---CSSSCEEEE
T ss_pred             CCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcc---cCCCccccc
Confidence             3345555554  4444 3344433 3489999999 666665 788899999998632 23334444   577899999


Q ss_pred             EecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          181 DFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       181 ~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +|+| ++..++.++ .++.+++|++...                      ......+..|...+.++.|+  +++|++++
T Consensus       179 ~~s~-dg~~l~~~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          179 DYSP-DGRWIYFNSSRTGQMQIWRVRVD----------------------GSSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             EECT-TSSEEEEEECTTSSCEEEEEETT----------------------SSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             eECC-CCCEEEEEecCCCCccEEEECCC----------------------CCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence            9999 777666554 5899999998741                      12334555667778889998  78888887


Q ss_pred             ec-----------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          258 VD-----------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       258 ~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      .+           +.|.+||+.+++.       ..+..+..|...+..++|+|++  ++|++++.+
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~  292 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDG--DEFAYVRYF  292 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTS--SEEEEEEEC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCC--CEEEEEEec
Confidence            76           5799999987652       1234444667788999999999  567666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=6.3e-23  Score=169.55  Aligned_cols=245  Identities=9%  Similarity=-0.021  Sum_probs=169.4

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCcc-ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEE-SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH  127 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  127 (346)
                      ++|++++.++ |.+||..+++.+..+...    +.. .+..++|+  |+|+.+++++..++.|.+||+.+++.+..+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIA----DAGPTPMVPMVA--PGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT----TCTTCCCCEEEC--TTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcC----CCCCCccceEEc--CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence            4677777776 999999888776665421    111 24446555  999735566677899999999999887766531


Q ss_pred             -----CCceEEEEEeCCCCceEEEee------------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          128 -----GDSINEIRTQPLKPSLVVSAS------------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       128 -----~~~v~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                           ...+..++|+| +++.+++++            .++.|.+||+.+++.+..+.    ....+.+++|+| +++++
T Consensus        76 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l  149 (337)
T 1pby_B           76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWAR-DGSKL  149 (337)
T ss_dssp             BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECT-TSSCE
T ss_pred             CcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe----CCCCcceeEECC-CCCEE
Confidence                 22677899999 787887775            57999999999998888776    345678899999 77767


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--cceEEEEec--CCEEEEEe---------
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKS---------  257 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~l~~~~---------  257 (346)
                      +++  ++.|.+||+.+.+.....                       ..+.  ..+   .|+  +..++..+         
T Consensus       150 ~~~--~~~i~~~d~~~~~~~~~~-----------------------~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          150 YGL--GRDLHVMDPEAGTLVEDK-----------------------PIQSWEAET---YAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             EEE--SSSEEEEETTTTEEEEEE-----------------------CSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEE
T ss_pred             EEe--CCeEEEEECCCCcEeeee-----------------------eccccCCCc---eeCCCccEEeeeccCCCceeee
Confidence            766  688999999874432111                       1000  000   111  22221111         


Q ss_pred             -----ecC----------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          258 -----VDN----------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       258 -----~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                           .++          .|.+||+.+++.        ....+..+...+..++|+||+  ++++++  ++.|++||+.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~s~dg--~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGEM--------AMREVRIMDVFYFSTAVNPAK--TRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCE--------EEEEEEECSSCEEEEEECTTS--SEEEEE--ESEEEEEETTT
T ss_pred             eeccccccccccccccccceEEEeCCCCCc--------eEeecCCCCCceeeEEECCCC--CEEEEe--CCeEEEEECCC
Confidence                 111          689999988762        122233344578889999999  567776  79999999999


Q ss_pred             CCcceeeeeeeeEEEEEecCCCCC
Q 019117          323 SPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ++.+........+.+++|+|||++
T Consensus       270 ~~~~~~~~~~~~~~~~~~s~dg~~  293 (337)
T 1pby_B          270 NASIKRVPLPHSYYSVNVSTDGST  293 (337)
T ss_dssp             TEEEEEEECSSCCCEEEECTTSCE
T ss_pred             CcCcceecCCCceeeEEECCCCCE
Confidence            887666666667889999999973

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=8.4e-23  Score=192.69  Aligned_cols=261  Identities=11%  Similarity=-0.004  Sum_probs=192.8

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ..+.+|...+.++.|++    + .++++++.++ +.||.+.. +.....+..     +. .+...+|+  |+|+ .|+.+
T Consensus       197 ~~l~~~~~~v~~~~~s~----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~-~~~~~~~S--pDG~-~la~~  262 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVG----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTS-----FT-DYYPRHLN--TDGR-RILFS  262 (1045)
T ss_dssp             EEEECCSSCCEEEEEET----T-EEEEEECTTSSCEEEEEETTSCSCEECCC-----CC-SSCEEEEE--ESSS-CEEEE
T ss_pred             EECcCCCCcccceEEeC----C-EEEEEEeccCceEEEEEeCCCCcceEecC-----CC-CcceeeEc--CCCC-EEEEE
Confidence            34578999999999998    4 6667777666 88888764 333333332     11 34445555  9998 77777


Q ss_pred             ecCCeEEEEEccCcceeeeecc-----------CCCceEEEEEe-CCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117          105 GINGIIRVIDVSNEKLHKSFVG-----------HGDSINEIRTQ-PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                       .++.|.+|++...+ +..+..           |...+..++|+ | ++..|++++ ++.|.+|++..++... +.   .
T Consensus       263 -~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~---~  334 (1045)
T 1k32_A          263 -KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VP---E  334 (1045)
T ss_dssp             -ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CS---C
T ss_pred             -eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-cc---C
Confidence             48999999985443 334443           34578999999 9 888888887 7899999998776544 43   4


Q ss_pred             CCc-ceEEEEecCCCCcEEEEEecCCeEE-EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          173 HRN-EVLSVDFHPSDIYRIASCGMDNTVK-IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       173 ~~~-~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                      |.. .+..++|+  ++..++.++.++.+. +||+....                        ...+..|...+..++|+ 
T Consensus       335 ~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~------------------------~~~l~~~~~~~~~~~~Sp  388 (1045)
T 1k32_A          335 PLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK------------------------AEKFEENLGNVFAMGVDR  388 (1045)
T ss_dssp             CSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC------------------------EEECCCCCCSEEEEEECT
T ss_pred             CCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC------------------------ceEecCCccceeeeEECC
Confidence            666 89999999  667787777777888 88887621                        22233677788999998 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC----------CcEEEE
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----------GKIFVW  318 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d----------g~i~iw  318 (346)
                       |++|++++.++.|++||+.+++         .......|...+..++||||+  ++|++++.+          +.|++|
T Consensus       389 DG~~la~~~~~~~v~~~d~~tg~---------~~~~~~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          389 NGKFAVVANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CCCEEEEECCCCeEEEEECCCCc---------eEEeccCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEE
Confidence             8899999999999999998876         344444677888999999999  678777664          489999


Q ss_pred             EcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          319 ELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       319 d~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      |+.+++..........+..++|+|||++
T Consensus       458 d~~~g~~~~l~~~~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          458 DMEGRKIFAATTENSHDYAPAFDADSKN  485 (1045)
T ss_dssp             ETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred             ECCCCcEEEeeCCCcccCCceEcCCCCE
Confidence            9998864333333445778999999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=2.6e-23  Score=177.10  Aligned_cols=199  Identities=13%  Similarity=0.137  Sum_probs=146.2

Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----------eee-----eeccCCCceEEEEEeCCCCceEE----
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHK-----SFVGHGDSINEIRTQPLKPSLVV----  145 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~~l~----  145 (346)
                      .+..++++  +++. ++++++.++ +++|+.....          .+.     ....+...|.+++|+| ++++|+    
T Consensus        38 ~~n~lavs--~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~  112 (434)
T 2oit_A           38 RSSLLAVS--NKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMM  112 (434)
T ss_dssp             CCBCEEEE--TTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEE
T ss_pred             CccEEEEe--cCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEe
Confidence            34557766  7787 899998887 8998753210          010     1112567899999999 788888    


Q ss_pred             EeeCCCCEEEEecCCC--------eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceee
Q 019117          146 SASKDESVRLWNVQTG--------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW  217 (346)
Q Consensus       146 s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  217 (346)
                      +++.|+.|++||++++        +.+..+....+|...|.+++|+|+++.+|++++.||+|++||++..          
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----------  182 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----------  182 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----------
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----------
Confidence            8899999999998754        3333333333799999999999954899999999999999999982          


Q ss_pred             cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc-------CC
Q 019117          218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-------VP  288 (346)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~  288 (346)
                                   ........|...|.+++|+  |++|++|+.||+|++||++ ++         ....+.       .|
T Consensus       183 -------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---------~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          183 -------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---------EKKVIPCPPFYESDH  239 (434)
T ss_dssp             -------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---------EEEEECCCTTCCTTS
T ss_pred             -------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---------ccccccCCcccCCCC
Confidence                         2344455688999999999  8899999999999999998 32         111111       23


Q ss_pred             CcCeeEEEEeecCCcceEEE-EcCCC------cEEEEEcCCC
Q 019117          289 ECDIWFIKFSCDFHYNAAAI-GNREG------KIFVWELQSS  323 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~-~~~dg------~i~iwd~~~~  323 (346)
                      ...|.+++|++++  .++++ ...||      .+++|++...
T Consensus       240 ~~~v~~v~w~~~~--~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          240 PVRVLDVLWIGTY--VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceeEEEEEEecCc--eEEEEEccCCCccCCCCceEEEEeccC
Confidence            3479999999987  45533 33443      3899999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=2.6e-22  Score=189.36  Aligned_cols=266  Identities=10%  Similarity=0.011  Sum_probs=196.8

Q ss_pred             CCCceEEEEEE-eecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCcc-ceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           32 GKRPLYAVVFN-FIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEE-SFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        32 h~~~v~~~~~~-p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      |...+.+++|+ |    +|+.||+++.+.+.+|+...+.... +.     .+.. .+..++|  + +|+ .|+.++.++.
T Consensus       294 ~~~~v~~~~~S~p----dG~~la~~~~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~--s-dg~-~l~~~s~~~~  359 (1045)
T 1k32_A          294 SIPSKFAEDFSPL----DGDLIAFVSRGQAFIQDVSGTYVLK-VP-----EPLRIRYVRRGG--D-TKV-AFIHGTREGD  359 (1045)
T ss_dssp             ECGGGGEEEEEEC----GGGCEEEEETTEEEEECTTSSBEEE-CS-----CCSCEEEEEECS--S-SEE-EEEEEETTEE
T ss_pred             cccccceeeecCC----CCCEEEEEEcCEEEEEcCCCCceEE-cc-----CCCcceEEeeeE--c-CCC-eEEEEECCCc
Confidence            44578999999 9    7899999886669999987665432 21     1333 5555555  4 787 8888888888


Q ss_pred             EE-EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          110 IR-VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       110 i~-iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +. +|++.+++.... ..|...+..++|+| +++.|++++.++.|++||+.+++....+.   +|...+.+++|+| +++
T Consensus       360 l~~~~d~~~~~~~~l-~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~Sp-DG~  433 (1045)
T 1k32_A          360 FLGIYDYRTGKAEKF-EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISD-NSR  433 (1045)
T ss_dssp             EEEEEETTTCCEEEC-CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECT-TSC
T ss_pred             eEEEEECCCCCceEe-cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECC-CCC
Confidence            88 999887765443 37888999999999 89999999999999999999998887776   5888999999999 888


Q ss_pred             EEEEEecCC----------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          189 RIASCGMDN----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       189 ~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      +|++++.++          .|++||+...                       . ...+..|...+..+.|+  |++|+.+
T Consensus       434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g-----------------------~-~~~l~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          434 FIAYGFPLKHGETDGYVMQAIHVYDMEGR-----------------------K-IFAATTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTT-----------------------E-EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             eEEEEecCccccccCCCCCeEEEEECCCC-----------------------c-EEEeeCCCcccCCceEcCCCCEEEEE
Confidence            888777654          8999999872                       1 34555677778888998  8899999


Q ss_pred             eecCeEEEEcCCCCCCCC----------------------------------CCccccccccccCCCcCeeEEEEeecCC
Q 019117          257 SVDNEIVLWEPKMKEQSP----------------------------------GEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                      +.++...+|+........                                  .......+..+..+.+.+..++++||+ 
T Consensus       490 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-  568 (1045)
T 1k32_A          490 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-  568 (1045)
T ss_dssp             ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-
T ss_pred             ecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-
Confidence            988888888754322100                                  000011223344566788999999998 


Q ss_pred             cceEEE-------------EcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          303 YNAAAI-------------GNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       303 ~~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                       .++++             ......|++||+.+++.....   ..+..++|||||++
T Consensus       569 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~  621 (1045)
T 1k32_A          569 -ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKT  621 (1045)
T ss_dssp             -EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCE
T ss_pred             -eEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCE
Confidence             55664             123557899999988743322   56788999999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.4e-23  Score=189.66  Aligned_cols=262  Identities=9%  Similarity=-0.008  Sum_probs=171.7

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------  107 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------  107 (346)
                      .+.+++|+|    +|+++++ +.++ |++||..+++....+..+..  ....+..++|+  |||+ +|++++.+      
T Consensus        18 ~~~~~~~sp----dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~S--pDg~-~l~~~~~~~~~~~~   87 (723)
T 1xfd_A           18 HDPEAKWIS----DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEIS--PDRE-YALFSYNVEPIYQH   87 (723)
T ss_dssp             CCCCCCBSS----SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEEC--TTSS-EEEEEESCCCCSSS
T ss_pred             cccccEEcC----CCcEEEE-eCCCCEEEEECCCCcEEEEeccccc--cccccceEEEC--CCCC-EEEEEecCccceee
Confidence            467899999    7787777 4555 99999998887655542110  00136666665  9999 88888764      


Q ss_pred             ---CeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc-------
Q 019117          108 ---GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-------  175 (346)
Q Consensus       108 ---g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------  175 (346)
                         +.+.+||+.+++..  .....|...+..++|+| +++.|+.++. +.|++||+.+++......   .+..       
T Consensus        88 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g~  162 (723)
T 1xfd_A           88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNGL  162 (723)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEEE
T ss_pred             cceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECcc
Confidence               78899999988752  22234555688999999 8889998886 799999999887766554   2332       


Q ss_pred             -----------ceEEEEecCCCCcEEEEEecCC----------------------------------eEEEEEcccccee
Q 019117          176 -----------EVLSVDFHPSDIYRIASCGMDN----------------------------------TVKIWSMKEFWTY  210 (346)
Q Consensus       176 -----------~v~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~  210 (346)
                                 .+.+++|+| +++.|++++.|+                                  .|.+||+.+..  
T Consensus       163 ~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~--  239 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--  239 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--
T ss_pred             cceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc--
Confidence                       237899999 888888876543                                  45566655421  


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEee------cccceEEEEec--CCEEEEEee----cCeEEEEcCCCCCCCCCCcc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASV------HSNYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~  278 (346)
                                           ....+..      +...+..+.|+  |+++++...    +..|++||+.+++       
T Consensus       240 ---------------------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-------  291 (723)
T 1xfd_A          240 ---------------------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-------  291 (723)
T ss_dssp             ---------------------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-------
T ss_pred             ---------------------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-------
Confidence                                 1122222      25678889998  667766643    3679999998876       


Q ss_pred             ccccccccC-CCcCe----eEEEEeecCCcceEEE--EcCCC------cEEEEE-cCCCC---cceeeeeeeeEEE-EEe
Q 019117          279 ADILQKYPV-PECDI----WFIKFSCDFHYNAAAI--GNREG------KIFVWE-LQSSP---PVLIARLICFSLH-VKY  340 (346)
Q Consensus       279 ~~~~~~~~~-~~~~v----~~~~~s~~~~~~~l~~--~~~dg------~i~iwd-~~~~~---~~~~~~~~~~~~~-~~~  340 (346)
                        ....+.. +...+    ..++|+|||+  .|+.  +..++      .|++|| ..+++   ..........+.. ++|
T Consensus       292 --~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~  367 (723)
T 1xfd_A          292 --CTKKHEDESEAWLHRQNEEPVFSKDGR--KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (723)
T ss_dssp             --EEEEEEEECSSCCCCCCCCCEECTTSC--SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             --ceEEEEeccCCEEeccCCCceEcCCCC--eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence              2222211 22223    3679999994  4443  55666      577788 44444   2222211222333 699


Q ss_pred             cCCCCC
Q 019117          341 NPQSVY  346 (346)
Q Consensus       341 spdg~~  346 (346)
                      ||||++
T Consensus       368 spdg~~  373 (723)
T 1xfd_A          368 DEKGNK  373 (723)
T ss_dssp             ETTTTE
T ss_pred             cCCCCE
Confidence            999973

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=9e-21  Score=157.39  Aligned_cols=258  Identities=12%  Similarity=0.062  Sum_probs=163.8

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcC--Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-c
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-I  106 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~--~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~  106 (346)
                      .+...+..++|+|    ++++++++..  ++ |.+|++.++.. ..+....  .+...+..++|+  |+|+ +|++++ .
T Consensus        37 ~~~~~p~~~a~sp----dg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~--~~~~~p~~~a~s--pdg~-~l~~~~~~  106 (347)
T 3hfq_A           37 AATQNPTYLALSA----KDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVV--APGTPPAYVAVD--EARQ-LVYSANYH  106 (347)
T ss_dssp             EECSCCCCEEECT----TCEEEEEEEETTEEEEEEEEEETTEE-EEEEEEE--EESCCCSEEEEE--TTTT-EEEEEETT
T ss_pred             eccCCcceEEEcc----CCeEEEEEecCCCceEEEEEecCCcE-EEeeeee--cCCCCCEEEEEC--CCCC-EEEEEeCC
Confidence            4556678899999    6775555442  34 99999966543 2222211  133445556665  9998 777777 7


Q ss_pred             CCeEEEEEccC-c--ceeeeecc---------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccCCC
Q 019117          107 NGIIRVIDVSN-E--KLHKSFVG---------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGH  173 (346)
Q Consensus       107 dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~  173 (346)
                      ++.|.+|++.. +  +.+..+..         +...+.+++|+| +++++++...++.|.+|++. +++...........
T Consensus       107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  185 (347)
T 3hfq_A          107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA  185 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred             CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence            89999999963 2  23333321         123488999999 66677777778899999998 45433221100123


Q ss_pred             CcceEEEEecCCCCcE-EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc------cceEEE
Q 019117          174 RNEVLSVDFHPSDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS------NYVDCN  246 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~  246 (346)
                      ...+..++|+| ++++ +++...++.|.+|++.......                   ..+.......      ..+..+
T Consensus       186 g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~-------------------~~~~~~~~~~~~~~~~~~~~~i  245 (347)
T 3hfq_A          186 GFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAF-------------------TQLGIVKTIPADYTAHNGAAAI  245 (347)
T ss_dssp             TCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEE-------------------EEEEEEESSCTTCCSCCEEEEE
T ss_pred             CCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCce-------------------EEeeeeeecCCCCCCCCcceeE
Confidence            34678899999 7774 4556678899999987511100                   0111121111      347788


Q ss_pred             Eec--CCEEE-EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEE--Ec
Q 019117          247 RWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVW--EL  320 (346)
Q Consensus       247 ~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iw--d~  320 (346)
                      +|+  |++|+ +...++.|.+|++....      ....+..+..+...+..++|+||+  ++|++++ .++.|.+|  |.
T Consensus       246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          246 RLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTE--AFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTS--SEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCC--CEEEEEEcCCCcEEEEEEeC
Confidence            888  77764 55568999999997421      112445555555678899999999  5666655 56899999  55


Q ss_pred             CCCCcce
Q 019117          321 QSSPPVL  327 (346)
Q Consensus       321 ~~~~~~~  327 (346)
                      .+++...
T Consensus       318 ~tg~l~~  324 (347)
T 3hfq_A          318 TSGKLSL  324 (347)
T ss_dssp             TTCCEEE
T ss_pred             CCCeEEe
Confidence            5666543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=7.8e-22  Score=162.98  Aligned_cols=246  Identities=10%  Similarity=0.078  Sum_probs=172.1

Q ss_pred             ceEEEEEEeecCCCccE-EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-------
Q 019117           35 PLYAVVFNFIDSRYFNV-FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-------  105 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~-la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-------  105 (346)
                      .+..++|+|    +++. ++++..++ |.+||+.+++.+..+.......+...+..++|+  |+|+ +|+++.       
T Consensus        35 ~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~-~l~~~~~~~~~~~  107 (337)
T 1pby_B           35 TPMVPMVAP----GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS--PDGK-TLAIYESPVRLEL  107 (337)
T ss_dssp             CCCCEEECT----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC--TTSS-EEEEEEEEEEECS
T ss_pred             CccceEEcC----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC--CCCC-EEEEEeccccccc
Confidence            478899999    6654 45555555 999999888876655521100011234445554  9998 777775       


Q ss_pred             -----cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          106 -----INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       106 -----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                           .++.|.+||+.+++.+..+.. ...+..++|+| ++++|+++  ++.|.+||+.+++.+..+..   +. ....+
T Consensus       108 ~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~---~~-~~~~~  179 (337)
T 1pby_B          108 THFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPI---QS-WEAET  179 (337)
T ss_dssp             SCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECS---TT-TTTTT
T ss_pred             ccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeec---cc-cCCCc
Confidence                 579999999999888777764 45678899999 77777777  68899999999998877762   21 01123


Q ss_pred             EecCCCCcEEEEEe-cCC-----------------------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          181 DFHPSDIYRIASCG-MDN-----------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       181 ~~~~~~~~~l~s~~-~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      .|+| ++..++..+ .++                       .|.+||+.+.+.                      .....
T Consensus       180 ~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----------------------~~~~~  236 (337)
T 1pby_B          180 YAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM----------------------AMREV  236 (337)
T ss_dssp             BCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE----------------------EEEEE
T ss_pred             eeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc----------------------eEeec
Confidence            6788 555444333 233                       467888877321                      12234


Q ss_pred             eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117          237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  314 (346)
Q Consensus       237 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  314 (346)
                      ..+...+.++.|+  +++++++  ++.|.+||+.+++         .+..+..+ ..+.+++|+|++  ++|++++.++.
T Consensus       237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~s~dg--~~l~~~~~~~~  302 (337)
T 1pby_B          237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---------SIKRVPLP-HSYYSVNVSTDG--STVWLGGALGD  302 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---------EEEEEECS-SCCCEEEECTTS--CEEEEESBSSE
T ss_pred             CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---------CcceecCC-CceeeEEECCCC--CEEEEEcCCCc
Confidence            4566678888998  7788877  7999999998765         33333332 467899999999  67888888999


Q ss_pred             EEEEEcCCCCcceeeeee
Q 019117          315 IFVWELQSSPPVLIARLI  332 (346)
Q Consensus       315 i~iwd~~~~~~~~~~~~~  332 (346)
                      |++||+.+++.+..+...
T Consensus       303 i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          303 LAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEETTTCCEEEEEECG
T ss_pred             EEEEECcCCcEEEEEEcC
Confidence            999999999876665554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=3.3e-22  Score=177.49  Aligned_cols=251  Identities=12%  Similarity=0.039  Sum_probs=175.5

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---  106 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---  106 (346)
                      +..+|++++|+|    ||+.||+++. ++ +.||++..+.. ..+..    .+...+..++|+  || + ++++++.   
T Consensus        20 ~~~~~~~~~~~~----DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~----~~~~~~~~~~~s--pd-~-~l~~~~~~~g   86 (582)
T 3o4h_A           20 IAVEKYSLQGVV----DGDKLLVVGFSEGSVNAYLYDGGET-VKLNR----EPINSVLDPHYG--VG-R-VILVRDVSKG   86 (582)
T ss_dssp             HHSCEEEEEEEE----TTTEEEEEEEETTEEEEEEEETTEE-EECCS----SCCSEECEECTT--CS-E-EEEEEECSTT
T ss_pred             hccchheeecCC----CCCeEEEEEccCCceeEEEEcCCCc-Eeeec----ccccccccccCC--CC-e-EEEEeccCCC
Confidence            356799999999    8899998876 66 99999855443 33321    122456666665  88 6 8887765   


Q ss_pred             CCeEEEEEccC---cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          107 NGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       107 dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      +....+|.+..   +... .+... ..+...+|+|++...+++.+.++.+.+||+.+++......    +..  .+++|+
T Consensus        87 ~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~--~~~~~s  158 (582)
T 3o4h_A           87 AEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG--FGFVSD  158 (582)
T ss_dssp             SCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS--CEEEEE
T ss_pred             CcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC--ceEEEC
Confidence            45566765543   2222 33322 2344668888433444444445556699999887665554    222  789999


Q ss_pred             CCCCcEEEEEecC----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          184 PSDIYRIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       184 ~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      | +++++++++.+    +.|.+||+.+.+                        ...+..|...+..++|+  |+.|+++.
T Consensus       159 p-DG~~la~~~~~~~~~~~i~~~d~~~g~------------------------~~~l~~~~~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          159 I-RGDLIAGLGFFGGGRVSLFTSNLSSGG------------------------LRVFDSGEGSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             E-ETTEEEEEEEEETTEEEEEEEETTTCC------------------------CEEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred             C-CCCEEEEEEEcCCCCeEEEEEcCCCCC------------------------ceEeecCCCccccceECCCCCEEEEcc
Confidence            9 89999988776    789999988722                        23566788888999998  88999888


Q ss_pred             ecC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEE--------EeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117          258 VDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK--------FSCDFHYNAAAIGNREGKIFVWELQSSPPVL  327 (346)
Q Consensus       258 ~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (346)
                      .++  .|++||+.+++         .. .+..+...+..++        |+||+  .++++++.|+.+++|++  ++...
T Consensus       214 ~~~~~~i~~~d~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          214 TAREARLVTVDPRDGS---------VE-DLELPSKDFSSYRPTAITWLGYLPDG--RLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             CSSCEEEEEECTTTCC---------EE-ECCCSCSHHHHHCCSEEEEEEECTTS--CEEEEEEETTEEEEEET--TEEEC
T ss_pred             CCCeeEEEEEcCCCCc---------EE-EccCCCcChhhhhhccccceeEcCCC--cEEEEEEcCCcEEEEEE--CCeec
Confidence            888  89999998876         22 4445555555566        99999  68999999999999999  54332


Q ss_pred             eeeeeeeEEEEEecCCCC
Q 019117          328 IARLICFSLHVKYNPQSV  345 (346)
Q Consensus       328 ~~~~~~~~~~~~~spdg~  345 (346)
                        ...+.+.+++|+ ||+
T Consensus       280 --~~~~~v~~~~~s-dg~  294 (582)
T 3o4h_A          280 --APQGNHGRVVLW-RGK  294 (582)
T ss_dssp             --CCSSEEEEEEEE-TTE
T ss_pred             --cCCCceEEEEec-CCE
Confidence              334567788888 775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=7.3e-22  Score=179.87  Aligned_cols=276  Identities=8%  Similarity=-0.027  Sum_probs=177.2

Q ss_pred             eeecccCCC---ceEEEEEEeecCCCccEEEEEcCC---------c-EEEEEeccCceeeeEeeeecCCCccceEEEEEE
Q 019117           26 TNKLQEGKR---PLYAVVFNFIDSRYFNVFATVGGN---------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA   92 (346)
Q Consensus        26 ~~~~~~h~~---~v~~~~~~p~~~~~~~~la~~~~~---------~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   92 (346)
                      ...+.+|..   .|.+++|||    +|++||+++.+         + +.+||+.+++. ..+...  ..+...+..++|+
T Consensus        50 ~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~~~~S  122 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP--EVSNAKLQYAGWG  122 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT--TCCSCCCSBCCBC
T ss_pred             EEEeccccccccccceEEECC----CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC--ccccccccccEEC
Confidence            344455554   499999999    88999988763         3 88999888765 223221  1233335555555


Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCce------------------EEEEEeCCCCceEEEeeCCC---
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI------------------NEIRTQPLKPSLVVSASKDE---  151 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~s~~~d~---  151 (346)
                        |||+ .|+.++. +.|.+||+.+++.......+...+                  .+++|+| +++.|++++.|+   
T Consensus       123 --PdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~  197 (723)
T 1xfd_A          123 --PKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV  197 (723)
T ss_dssp             --SSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred             --CCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence              9999 8888875 799999999888766655444333                  7899999 888888877543   


Q ss_pred             -------------------------------CEEEEecCCCeeEEEeccc---CCCCcceEEEEecCCCCcEEEEEec--
Q 019117          152 -------------------------------SVRLWNVQTGICILIFAGA---GGHRNEVLSVDFHPSDIYRIASCGM--  195 (346)
Q Consensus       152 -------------------------------~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~--  195 (346)
                                                     .|++||+.+++....+...   ..+...+..++|+| +++++++...  
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~  276 (723)
T 1xfd_A          198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRA  276 (723)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETT
T ss_pred             ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCC
Confidence                                           7999999888765555410   01367889999999 8888866643  


Q ss_pred             --CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccce----EEEEec--CCEEEE--EeecC----
Q 019117          196 --DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYV----DCNRWL--GDFILS--KSVDN----  260 (346)
Q Consensus       196 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i----~~~~~~--~~~l~~--~~~d~----  260 (346)
                        +..|.+||+.+.+                       ...... .+...+    ..+.|+  |+.|+.  +..++    
T Consensus       277 ~~~~~i~~~d~~~g~-----------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  333 (723)
T 1xfd_A          277 QNVSILTLCDATTGV-----------------------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (723)
T ss_dssp             SCEEEEEEEETTTCC-----------------------EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             CCeEEEEEEeCCCCc-----------------------ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence              3579999998732                       122222 223333    266777  665554  44566    


Q ss_pred             --eEEEEcC-CCCCCCCCCccccccccccCCCcCeeE-EEEeecCCcceEEEE-cCC--CcEEEEEcCCCCc--ceeee-
Q 019117          261 --EIVLWEP-KMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAAIG-NRE--GKIFVWELQSSPP--VLIAR-  330 (346)
Q Consensus       261 --~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~l~~~-~~d--g~i~iwd~~~~~~--~~~~~-  330 (346)
                        .|.+||+ ..++.       .....+..+...+.. ++|+||+  +.|+.. ..+  +.+++|++.....  ..... 
T Consensus       334 ~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  404 (723)
T 1xfd_A          334 FYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDEKG--NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC  404 (723)
T ss_dssp             EEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEETTT--TEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred             eeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcCCC--CEEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence              5667773 33320       002233322334444 6999999  556544 444  7899999875321  22111 


Q ss_pred             ---eeeeEEEEEecCCCCC
Q 019117          331 ---LICFSLHVKYNPQSVY  346 (346)
Q Consensus       331 ---~~~~~~~~~~spdg~~  346 (346)
                         ....+..++|||||++
T Consensus       405 ~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          405 DLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             TSSSSCCCCEEEECTTSSE
T ss_pred             cccCCCCeEEEEECCCCCE
Confidence               2344678999999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1e-21  Score=163.17  Aligned_cols=261  Identities=11%  Similarity=0.021  Sum_probs=168.8

Q ss_pred             EEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC
Q 019117           39 VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN  117 (346)
Q Consensus        39 ~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  117 (346)
                      +++++    ++.++++++.++ |.+||..+++....+...    ....+..++|+  |+|+.++++...++.|.+||+.+
T Consensus         5 ~~~~~----~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B            5 PALKA----GHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----DKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             CCCCT----TCEEEEEEETTTEEEEEETTTTEEEEEEECS----SCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccC----CCEEEEEeCCCCeEEEEECCCCcEEEEEecC----CCCCCceeEEC--CCCCEEEEEeCCCCcEEEEeCCC
Confidence            34555    567888887777 999999888776666531    11134445554  99983445666789999999999


Q ss_pred             cceeeeeccCC------CceEEEEEeCCCCceEEEeeCC------------CCEEEEecCCCee---EEEecccCCCCcc
Q 019117          118 EKLHKSFVGHG------DSINEIRTQPLKPSLVVSASKD------------ESVRLWNVQTGIC---ILIFAGAGGHRNE  176 (346)
Q Consensus       118 ~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~---~~~~~~~~~~~~~  176 (346)
                      ++.+..+..+.      ..+..++|+| +++++++++.+            +.|.+||+.+++.   +..+.    +...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~  149 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQ  149 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSS
T ss_pred             CcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCc
Confidence            98877665322      3378999999 78888888765            8999999988543   33343    4446


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC------------CCCCcc----------------
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS------------KFPTKY----------------  228 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~----------------  228 (346)
                      +.+++|+| +++ +++++  +.|.+||+.+.+............+.            ......                
T Consensus       150 ~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          150 VYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             CCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             ccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence            88999999 777 55544  34999999875432221111000000            000000                


Q ss_pred             -----------------ceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117          229 -----------------VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       229 -----------------~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  288 (346)
                                       ..........+...+..+.++   +++++++  ++.|.+||+.+++         .+..+.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~~-  293 (349)
T 1jmx_B          226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK---------LIKAANL-  293 (349)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE---------EEEEEEC-
T ss_pred             ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe---------EEEEEcC-
Confidence                             000011111222345556654   5677777  8899999998875         3333332 


Q ss_pred             CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      ...+.+++|+|++  ++|++++.++.|++||+.+++.+..+...
T Consensus       294 ~~~~~~~~~s~dg--~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          294 DHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SSCCCEEEECSSS--SCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCccceEECCCC--CEEEEecCCCeEEEEeccccceeeeeecC
Confidence            2357789999999  56777888999999999998766665554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.9e-20  Score=155.75  Aligned_cols=222  Identities=10%  Similarity=0.057  Sum_probs=161.5

Q ss_pred             cceEEEEEEEcCCCCcEEEEeec-------CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCCEEE
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGI-------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRL  155 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~i  155 (346)
                      ..+..++++  |+++ ++++++.       ++.|.+||..+++.+..+.. ...+..++|+| +++ ++++...++.|.+
T Consensus        41 ~~~~~~~~s--~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~  115 (353)
T 3vgz_A           41 KGAYEMAYS--QQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTA  115 (353)
T ss_dssp             SSEEEEEEE--TTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEE
T ss_pred             cCccceEEC--CCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEE
Confidence            345556665  9998 6666663       56899999999998888774 34578999999 666 5566666899999


Q ss_pred             EecCCCeeEEEecccCCC------CcceEEEEecCCCCcEEEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117          156 WNVQTGICILIFAGAGGH------RNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  227 (346)
Q Consensus       156 wd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
                      ||+.+++.+..+......      ...+.+++|+| +++.+++++  .++.|.+||+.+.+                   
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~-------------------  175 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK-------------------  175 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE-------------------
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc-------------------
Confidence            999999988887631111      01278999999 666666554  47899999998732                   


Q ss_pred             cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC----CCcCeeEEEEeecC
Q 019117          228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDF  301 (346)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~  301 (346)
                          ....+..+...+.++.|+  ++++++++.++.|.+||+.+++         .+..+..    +...+..++|+|++
T Consensus       176 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~dg  242 (353)
T 3vgz_A          176 ----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK---------ILSRKKLLDDGKEHFFINISLDTAR  242 (353)
T ss_dssp             ----EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE---------EEEEEECCCSSSCCCEEEEEEETTT
T ss_pred             ----eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe---------EEEEEEcCCCCCCcccceEEECCCC
Confidence                233343344456677776  7889999999999999998876         3333322    45567889999999


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          302 HYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      + .++++...++.|.+||+.+++.+....... ...++|+|||+
T Consensus       243 ~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~  284 (353)
T 3vgz_A          243 Q-RAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARN  284 (353)
T ss_dssp             T-EEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTT
T ss_pred             C-EEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCC
Confidence            4 244555566999999999998766666544 36799999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1e-19  Score=151.07  Aligned_cols=252  Identities=10%  Similarity=0.067  Sum_probs=157.7

Q ss_pred             cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec--CCeEEEEEccCcc--eeeeeccCCCceEE
Q 019117           59 RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEK--LHKSFVGHGDSINE  133 (346)
Q Consensus        59 ~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~--~~~~~~~~~~~v~~  133 (346)
                      +|.+|++... ..+..+....   +...+..++|+  |+|+ +++++..  ++.|.+|++.+++  .+..+..+...+..
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~~---~~~~p~~~a~s--pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLLA---ATQNPTYLALS--AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEE---ECSCCCCEEEC--TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CEEEEEEcCCCCeEEEeeeee---ccCCcceEEEc--cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            3888877642 2222222111   22334445555  9998 6655543  6899999997765  44454557778899


Q ss_pred             EEEeCCCCceEEEee-CCCCEEEEecCC-C--eeEEEecccC------CCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117          134 IRTQPLKPSLVVSAS-KDESVRLWNVQT-G--ICILIFAGAG------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       134 ~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~--~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  203 (346)
                      ++|+| ++++|++++ .++.|.+|++.. +  +.+..+....      .....+.+++|+| +++++++...++.|.+|+
T Consensus        91 ~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A           91 VAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             EEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEE
T ss_pred             EEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEE
Confidence            99999 788777776 789999999963 2  3333332100      0123588999999 777777777788999999


Q ss_pred             ccc-cceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCcc
Q 019117          204 MKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       204 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      +.. ...                     ........+ ......++|+  |+++++ ...++.|.+|++.....     .
T Consensus       169 ~~~~g~~---------------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-----~  222 (347)
T 3hfq_A          169 VSDAGQL---------------------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG-----A  222 (347)
T ss_dssp             ECTTSCE---------------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-----E
T ss_pred             ECCCCcE---------------------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----c
Confidence            983 111                     011111222 2246678888  775555 56689999999875210     0


Q ss_pred             ccccccccCC------CcCeeEEEEeecCCcceE-EEEcCCCcEEEEEcCC-CCcceeeeeee---eEEEEEecCCCCC
Q 019117          279 ADILQKYPVP------ECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQS-SPPVLIARLIC---FSLHVKYNPQSVY  346 (346)
Q Consensus       279 ~~~~~~~~~~------~~~v~~~~~s~~~~~~~l-~~~~~dg~i~iwd~~~-~~~~~~~~~~~---~~~~~~~spdg~~  346 (346)
                      ...+..+...      ...+..++|+||+  ++| ++...++.|.+|++.. +.......+..   .+..++|+|||++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          223 FTQLGIVKTIPADYTAHNGAAAIRLSHDG--HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF  299 (347)
T ss_dssp             EEEEEEEESSCTTCCSCCEEEEEEECTTS--CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred             eEEeeeeeecCCCCCCCCcceeEEECCCC--CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence            0111121111      1358889999999  555 6666789999999973 33333333332   4788999999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=3.8e-19  Score=148.43  Aligned_cols=269  Identities=10%  Similarity=0.038  Sum_probs=167.4

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCC-----cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGN-----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~-----~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      +...+..++|+|    ++++|++++.+     .|.+|++... ..+..+.....  +......+++    +++ +|++++
T Consensus        48 ~~~~p~~l~~sp----dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~--~~~~p~~~~~----dg~-~l~~~~  116 (361)
T 3scy_A           48 EVANPSYLIPSA----DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT--MGADPCYLTT----NGK-NIVTAN  116 (361)
T ss_dssp             ECSCCCSEEECT----TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC--SSSCEEEEEE----CSS-EEEEEE
T ss_pred             cCCCCceEEECC----CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc--CCCCcEEEEE----CCC-EEEEEE
Confidence            667778899999    78888888774     4999998764 33343333221  2233333443    677 555555


Q ss_pred             -cCCeEEEEEccCcceeeee------cc--------CCCceEEEEEeCCCCceEE-EeeCCCCEEEEecCCCee------
Q 019117          106 -INGIIRVIDVSNEKLHKSF------VG--------HGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGIC------  163 (346)
Q Consensus       106 -~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~------  163 (346)
                       .++.|.+|++.....+..+      .+        +...+.+++|+| ++++++ +...++.|.+|++.....      
T Consensus       117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~  195 (361)
T 3scy_A          117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK  195 (361)
T ss_dssp             TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred             CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence             6889999999754332211      11        123458899999 777554 445588999999875431      


Q ss_pred             E------EEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          164 I------LIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       164 ~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      +      .....  .+...+..++|+| +++++++++ .++.|.+||+.........                  .+...
T Consensus       196 l~~~~~~~~~~~--~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~------------------~~~~~  254 (361)
T 3scy_A          196 FLTKGTPEAFKV--APGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQ------------------TVAAD  254 (361)
T ss_dssp             CEEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEE------------------EEESC
T ss_pred             eeecccccceec--CCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeE------------------EEecC
Confidence            1      11111  3456788999999 777666665 6899999999853211110                  01111


Q ss_pred             eecccceEEEEec--CCEEEEEeec--CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-C
Q 019117          237 SVHSNYVDCNRWL--GDFILSKSVD--NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R  311 (346)
Q Consensus       237 ~~~~~~i~~~~~~--~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~  311 (346)
                      ..+......++|+  |++|+++..+  +.|.+|++.....     ....+..+.. ...+..++|+||+  ++|++++ .
T Consensus       255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-----~~~~~~~~~~-g~~~~~~~~spdg--~~l~~~~~~  326 (361)
T 3scy_A          255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-----TLTKVGYQLT-GIHPRNFIITPNG--KYLLVACRD  326 (361)
T ss_dssp             SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-----CEEEEEEEEC-SSCCCEEEECTTS--CEEEEEETT
T ss_pred             CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-----cEEEeeEecC-CCCCceEEECCCC--CEEEEEECC
Confidence            1223445788887  7788666654  8999999963210     1113333333 4567899999999  5666655 7


Q ss_pred             CCcEEEEE--cCCCCcceee-e-eeeeEEEEEec
Q 019117          312 EGKIFVWE--LQSSPPVLIA-R-LICFSLHVKYN  341 (346)
Q Consensus       312 dg~i~iwd--~~~~~~~~~~-~-~~~~~~~~~~s  341 (346)
                      ++.|.+|+  .++++..... . ....+.|+.|.
T Consensus       327 ~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          327 TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            78999964  4566644332 1 12347888886

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=3.4e-20  Score=168.43  Aligned_cols=252  Identities=12%  Similarity=0.054  Sum_probs=169.8

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-----CceeeeEeeeecC---------CCccceEEEEEEEc
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-----GGVIAALQSYVDE---------DKEESFYTVSWACN   94 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-----~~~~~~~~~~~~~---------~~~~~v~~~~~~~~   94 (346)
                      +..+...+.+++|+|    +|+.||++.++.|.+|++.+     ++...........         .+...+..+.|+  
T Consensus       116 l~~~~~~~~~~~~Sp----dG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S--  189 (706)
T 2z3z_A          116 LFDTNEETASLDFSP----VGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS--  189 (706)
T ss_dssp             EECCTTCCTTCEECT----TSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC--
T ss_pred             ccCCcccccCCcCCC----CCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC--
Confidence            345667788999999    78999998666699999987     6654332211000         000113445555  


Q ss_pred             CCCCcEEEEee---------------------------------cCCeEEEEEccCcceeeeec--cCCCceEEEEEeCC
Q 019117           95 VDGIPFLVAGG---------------------------------INGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPL  139 (346)
Q Consensus        95 ~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~  139 (346)
                      |||+ +|++++                                 .+..|.+||+.+++......  .|...+..++|+| 
T Consensus       190 pDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-  267 (706)
T 2z3z_A          190 PKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-  267 (706)
T ss_dssp             TTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-
T ss_pred             CCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-
Confidence            9999 888887                                 44689999999887654432  4677899999999 


Q ss_pred             CCceEEEeeCCC-----CEEEEecCCCeeEEEecccCCCC---cceEEEEecC-CCCcEEEEEecCCeEEEEEcccccee
Q 019117          140 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHR---NEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTY  210 (346)
Q Consensus       140 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~  210 (346)
                      +++.|++++.++     .|.+||+.+++....+... .+.   ..+..++|+| .++++++++..|+.+++|++...   
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~---  343 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT---  343 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---
Confidence            888888877665     8999999988433333210 122   2346789997 25568889999999999988631   


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEE-EEec--CCEEEEEee-cC----eEEEEcCCCCCCCCCCcccccc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWL--GDFILSKSV-DN----EIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~--~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                                         ...+..+..+...+.. +.|+  ++.|+.++. ++    .|..||+.+++          .
T Consensus       344 -------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----------~  394 (706)
T 2z3z_A          344 -------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----------T  394 (706)
T ss_dssp             -------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----------C
T ss_pred             -------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----------c
Confidence                               1223445556666766 6887  666655544 44    67777776653          1


Q ss_pred             ccccCCCcCeeEEEEeecCCcceEEEE-cCC---CcEEEEEcCCCC
Q 019117          283 QKYPVPECDIWFIKFSCDFHYNAAAIG-NRE---GKIFVWELQSSP  324 (346)
Q Consensus       283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~d---g~i~iwd~~~~~  324 (346)
                      ..+. +...+..++|+||+  ++++.. +.+   +.|++||+.+++
T Consensus       395 ~~l~-~~~~~~~~~~spdg--~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          395 KDLT-PESGMHRTQLSPDG--SAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EESC-CSSSEEEEEECTTS--SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             eecc-CCCceEEEEECCCC--CEEEEEecCCCCCcEEEEEECCCCe
Confidence            2222 45578899999999  455554 333   569999998876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=2.5e-20  Score=157.18  Aligned_cols=272  Identities=11%  Similarity=0.055  Sum_probs=173.4

Q ss_pred             eeeecccCCCceEE-----EEEEeecCCCccEEEEEcC-Cc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC
Q 019117           25 VTNKLQEGKRPLYA-----VVFNFIDSRYFNVFATVGG-NR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV   95 (346)
Q Consensus        25 ~~~~~~~h~~~v~~-----~~~~p~~~~~~~~la~~~~-~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   95 (346)
                      ....+..|......     .+|+|    +|+.|+.++. ++   |.+||+.+++.......     +...+....|  +|
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-----~~~~~~~~~~--sp   90 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTR----DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-----RGDNTFGGFL--SP   90 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-----SCBCSSSCEE--CT
T ss_pred             ceEEecCCcccccchhhcCccCCC----CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-----CCCCccceEE--cC
Confidence            34556667666665     78999    7888888776 55   88888877765444332     2222222344  59


Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEE--EeCCCCceEEEe----------------------eCCC
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR--TQPLKPSLVVSA----------------------SKDE  151 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~~d~  151 (346)
                      +|+ .|+.++.++.|.+||+.+++....+..+...+....  ++| ++..++..                      ..+.
T Consensus        91 dg~-~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
T 3pe7_A           91 DDD-ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC  168 (388)
T ss_dssp             TSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred             CCC-EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcc
Confidence            999 999999899999999999987766666666554444  477 67776632                      2447


Q ss_pred             CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCC
Q 019117          152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFP  225 (346)
Q Consensus       152 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (346)
                      .|.+||+.+++......    +...+..++|+|.++..|+....+      ..|.++|+....                 
T Consensus       169 ~l~~~d~~~g~~~~l~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----------------  227 (388)
T 3pe7_A          169 RLMRVDLKTGESTVILQ----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-----------------  227 (388)
T ss_dssp             EEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-----------------
T ss_pred             eEEEEECCCCceEEeec----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-----------------
Confidence            89999999887655543    667789999998345555555443      367777765521                 


Q ss_pred             CccceeceEEEeecc--cceEEEEec--CCEEEEEee-cC----eEEEEcCCCCCCCCCCccccccccccCCC---cCee
Q 019117          226 TKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKSV-DN----EIVLWEPKMKEQSPGEGTADILQKYPVPE---CDIW  293 (346)
Q Consensus       226 ~~~~~~~~~~~~~~~--~~i~~~~~~--~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~v~  293 (346)
                             ...+..+.  ..+....|+  |+.|+..+. ++    .|.+||+.+++..       .+..+..+.   ....
T Consensus       228 -------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-------~l~~~~~~~~~~~~~~  293 (388)
T 3pe7_A          228 -------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-------QLTSMPACSHLMSNYD  293 (388)
T ss_dssp             -------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE-------EEEEECCEEEEEECTT
T ss_pred             -------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE-------EEEcCCCceeeeecCC
Confidence                   11222222  246677787  666655443 22    3999999987621       222222210   0012


Q ss_pred             EEEEeecCCcceEEEE---------cCCCcEEEEEcCCCCcceeeeeee-----------eEEEEEecCCCCC
Q 019117          294 FIKFSCDFHYNAAAIG---------NREGKIFVWELQSSPPVLIARLIC-----------FSLHVKYNPQSVY  346 (346)
Q Consensus       294 ~~~~s~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~spdg~~  346 (346)
                      .+.|+||++  .|+..         ..+..|++||+.+++.........           .+..++|+|||++
T Consensus       294 ~~~~spdg~--~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~  364 (388)
T 3pe7_A          294 GSLMVGDGS--DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ  364 (388)
T ss_dssp             SSEEEEEEC--CC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             CCeEccCCC--cceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCE
Confidence            237999994  45532         456789999999987544444433           3567899999973

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=172.15  Aligned_cols=267  Identities=11%  Similarity=0.025  Sum_probs=165.8

Q ss_pred             EEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---------CC
Q 019117           38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---------NG  108 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---------dg  108 (346)
                      +++|+|    ++++++++.++.|++||..+++....+......  ...+..++|+  |||+ +|+.++.         ++
T Consensus        20 ~~~~s~----dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~S--pDg~-~la~~~~~~~~~~~s~~~   90 (719)
T 1z68_A           20 FPNWIS----GQEYLHQSADNNIVLYNIETGQSYTILSNRTMK--SVNASNYGLS--PDRQ-FVYLESDYSKLWRYSYTA   90 (719)
T ss_dssp             CCEESS----SSEEEEECTTSCEEEEESSSCCEEEEECHHHHH--TTTCSEEEEC--TTSS-EEEEEEEEEECSSSCEEE
T ss_pred             ccEECC----CCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc--ccceeeEEEC--CCCC-eEEEEecCceeEEeecce
Confidence            789999    777777665444999999888876555421100  0125556655  9999 8888876         68


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce-----------
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-----------  177 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-----------  177 (346)
                      .|++||+.+++.+.... ....+..++|+| +++.|+.+. ++.|++||+.+++.......  ++...|           
T Consensus        91 ~i~~~d~~~g~~~~~~~-l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           91 TYYIYDLSNGEFVRGNE-LPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             EEEEEETTTTEECCSSC-CCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHH
T ss_pred             EEEEEECCCCcccccee-cCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeee
Confidence            99999999887631111 125688999999 888888886 78999999988876543321  222222           


Q ss_pred             ------EEEEecCCCCcEEEEEecCC----------------------------------eEEEEEccccceeeeeceee
Q 019117          178 ------LSVDFHPSDIYRIASCGMDN----------------------------------TVKIWSMKEFWTYVEKSFTW  217 (346)
Q Consensus       178 ------~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~  217 (346)
                            .+++|+| +++.|++++.|.                                  .|.+||+..........   
T Consensus       166 e~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~---  241 (719)
T 1z68_A          166 EMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE---  241 (719)
T ss_dssp             HTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE---
T ss_pred             ecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE---
Confidence                  4899999 888888877652                                  66777776632100000   


Q ss_pred             cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec----CeEEEEc----CCCCCCCCCCccccccccc--
Q 019117          218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWE----PKMKEQSPGEGTADILQKY--  285 (346)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~~~~~~~~~--  285 (346)
                                 .. ....+..|...+.+++|+  ++++++....    ..|.+||    +.+++.         ...+  
T Consensus       242 -----------~~-~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---------~~~~~~  300 (719)
T 1z68_A          242 -----------VP-VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---------PKTQEH  300 (719)
T ss_dssp             -----------CC-CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---------CGGGEE
T ss_pred             -----------cc-CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---------EEEEec
Confidence                       00 001123467788999998  5555554332    3488899    766652         2222  


Q ss_pred             --cCCCcCee-----EEEEeecCCcceEEEEcCCC--cEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117          286 --PVPECDIW-----FIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       286 --~~~~~~v~-----~~~~s~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg  344 (346)
                        ..+...+.     .+.|+||++.-++++...+|  .|.+||+.+++..........+..+.++ ||
T Consensus       301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~  367 (719)
T 1z68_A          301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQ  367 (719)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CS
T ss_pred             ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eC
Confidence              24555555     78999999521233454555  5777788776633222222224444444 44

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=2e-19  Score=149.22  Aligned_cols=221  Identities=12%  Similarity=0.033  Sum_probs=153.7

Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCce-EEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSL-VVSASKDESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~  170 (346)
                      +++++. ++++++.++.|.+||+.+++.+..+..+. ..+..++|+| +++. ++++..++.|.+||+.+++.+..+.. 
T Consensus         7 ~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~-   83 (349)
T 1jmx_B            7 LKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL-   83 (349)
T ss_dssp             CCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES-
T ss_pred             ccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc-
Confidence            346777 89999999999999999999888776543 2578999999 6664 55666789999999999988877752 


Q ss_pred             CCC-----CcceEEEEecCCCCcEEEEEecC------------CeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117          171 GGH-----RNEVLSVDFHPSDIYRIASCGMD------------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  233 (346)
Q Consensus       171 ~~~-----~~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
                       .+     ...+.+++|+| +++++++++.+            +.|.+||+.+.+.                    ...+
T Consensus        84 -~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------------~~~~  141 (349)
T 1jmx_B           84 -SSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------------------AKPV  141 (349)
T ss_dssp             -CCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------------------BCCS
T ss_pred             -ccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccc--------------------ccee
Confidence             12     23478999999 88888888765            8999999987321                    0111


Q ss_pred             EEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccc-------------------------c---cc
Q 019117          234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-------------------------I---LQ  283 (346)
Q Consensus       234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~---~~  283 (346)
                      ... .+...+.+++|+  ++ +++++  +.|.+||+.+++.........                         .   +.
T Consensus       142 ~~~-~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          142 RTF-PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             EEE-ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             eec-cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            122 234457788887  66 55544  349999998775321100000                         0   00


Q ss_pred             -------------------------------cccCCCcCeeEEEEee-cCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          284 -------------------------------KYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       284 -------------------------------~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                                                     .+..+...+..++|+| ++  ++++++  ++.|.+||+.+++.+.....
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg--~~l~~~--~~~v~~~d~~~~~~~~~~~~  293 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP--NQIYGV--LNRLAKYDLKQRKLIKAANL  293 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT--TEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC--CEEEEE--cCeEEEEECccCeEEEEEcC
Confidence                                           0000112456778889 88  567776  88999999999887666666


Q ss_pred             eeeEEEEEecCCCCC
Q 019117          332 ICFSLHVKYNPQSVY  346 (346)
Q Consensus       332 ~~~~~~~~~spdg~~  346 (346)
                      ...+.+++|+|||++
T Consensus       294 ~~~~~~~~~s~dg~~  308 (349)
T 1jmx_B          294 DHTYYCVAFDKKGDK  308 (349)
T ss_dssp             SSCCCEEEECSSSSC
T ss_pred             CCCccceEECCCCCE
Confidence            666789999999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=2.9e-18  Score=143.06  Aligned_cols=257  Identities=10%  Similarity=0.040  Sum_probs=154.1

Q ss_pred             cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC----CeEEEEEccC--cc--eeeeeccCCC
Q 019117           59 RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSN--EK--LHKSFVGHGD  129 (346)
Q Consensus        59 ~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~--~~~~~~~~~~  129 (346)
                      +|.+|.+... ..+..+...    +......++|+  |+|+ +|++++.+    +.|.+|++..  ++  .+.....+..
T Consensus        28 ~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~s--pdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~  100 (361)
T 3scy_A           28 GIYTFRFNEETGESLPLSDA----EVANPSYLIPS--ADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA  100 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEE----ECSCCCSEEEC--TTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             CEEEEEEeCCCCCEEEeecc----cCCCCceEEEC--CCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence            4999987532 222333222    22333345555  9998 88888875    7999999876  43  3334444556


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc---c--------CCCCcceEEEEecCCCCcEE-EEEecCC
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG---A--------GGHRNEVLSVDFHPSDIYRI-ASCGMDN  197 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~--------~~~~~~v~~~~~~~~~~~~l-~s~~~d~  197 (346)
                      ....+++ . +..++++...++.|.+|++.....+..+..   .        ..+...+.+++|+| +++++ ++...++
T Consensus       101 ~p~~~~~-d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~  177 (361)
T 3scy_A          101 DPCYLTT-N-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTD  177 (361)
T ss_dssp             CEEEEEE-C-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTT
T ss_pred             CcEEEEE-C-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCC
Confidence            6777777 3 444444444688999999975433322210   0        01233468899999 77655 4445588


Q ss_pred             eEEEEEccccce----e-eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCC
Q 019117          198 TVKIWSMKEFWT----Y-VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKM  269 (346)
Q Consensus       198 ~i~iwd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~  269 (346)
                      .|.+|++.....    . +..               ..........+......++|+  |+++++++ .++.|.+|++.+
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLT---------------KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEE---------------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             EEEEEEEcCCCCcccccceee---------------cccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            999999876221    0 000               000011122234456788888  77777776 689999999986


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE-cC-CCcEEEEEcC--CCCcceeeeee--eeEEEEEecCC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NR-EGKIFVWELQ--SSPPVLIARLI--CFSLHVKYNPQ  343 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~-dg~i~iwd~~--~~~~~~~~~~~--~~~~~~~~spd  343 (346)
                      ++..    ....+.....+......++|+||+  ++|+++ .. ++.|.+|++.  +++......+.  ..+..++|+||
T Consensus       243 g~~~----~~~~~~~~~~~~~~~~~i~~spdg--~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd  316 (361)
T 3scy_A          243 GMLD----EIQTVAADTVNAQGSGDIHLSPDG--KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN  316 (361)
T ss_dssp             TEEE----EEEEEESCSSCCCCEEEEEECTTS--SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT
T ss_pred             CceE----EeEEEecCCCCCCCcccEEECCCC--CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC
Confidence            5310    000112222333456899999999  566444 44 5899999996  45543333333  35788999999


Q ss_pred             CCC
Q 019117          344 SVY  346 (346)
Q Consensus       344 g~~  346 (346)
                      |++
T Consensus       317 g~~  319 (361)
T 3scy_A          317 GKY  319 (361)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            974

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=2.4e-18  Score=143.65  Aligned_cols=255  Identities=13%  Similarity=0.088  Sum_probs=161.7

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCc-EEEEee----
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGG----  105 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~----  105 (346)
                      +...+..++|+|    ++++|++++.+.|.+|++. +++...... +..  .. ....  +.++|+|+. +++++.    
T Consensus        38 ~~~~~~~~a~sp----dg~~l~~~~~~~v~~~~~~~~g~~~~~~~-~~~--~g-~~~~--~~~spdg~~l~~~~~~~~~~  107 (365)
T 1jof_A           38 QDEPISWMTFDH----ERKNIYGAAMKKWSSFAVKSPTEIVHEAS-HPI--GG-HPRA--NDADTNTRAIFLLAAKQPPY  107 (365)
T ss_dssp             TTCCCSEEEECT----TSSEEEEEEBTEEEEEEEEETTEEEEEEE-EEC--CS-SGGG--GCTTSCCEEEEEEECSSTTC
T ss_pred             CCCCCcEEEECC----CCCEEEEEccceEEEEEECCCCCEEEeeE-eec--CC-CCcc--EEECCCCCEEEEEEecCCcc
Confidence            345678899999    7888888877789999987 665433222 211  11 1222  345699983 244553    


Q ss_pred             ---------cCCeEEEEEcc-Ccceeeeec----cCCCceEEEEEeCCCCceEEEee-CCCCEEEEecC-CCeeEE--Ee
Q 019117          106 ---------INGIIRVIDVS-NEKLHKSFV----GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQ-TGICIL--IF  167 (346)
Q Consensus       106 ---------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~--~~  167 (346)
                               .+|.+.+|++. +++....+.    .+...+.+++|+| ++++++++. .++.|.+||+. +++...  .+
T Consensus       108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~  186 (365)
T 1jof_A          108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence                     68999999997 465544333    2456799999999 777777665 46799999998 676432  22


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE----eeccc-
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVHSN-  241 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-  241 (346)
                      .. ..+...+..++|+| +++++++++. ++.|.+|++...........               ..+..+    ..|.. 
T Consensus       187 ~~-~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~---------------~~~~~~~~~~~g~~~~  249 (365)
T 1jof_A          187 DA-PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTH---------------HSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             EC-SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEE---------------EEEESSCTTCCCBCTT
T ss_pred             ec-CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEcc---------------ceEEcCCCCcCCcccc
Confidence            21 01356789999999 8877776664 78999998763110000000               000001    11222 


Q ss_pred             -----ceEEEE-ec--CCEEEEEeecC------eEEEEcCC-CCCCCCCCccccccc-cccCCCcCeeEEEEee---cCC
Q 019117          242 -----YVDCNR-WL--GDFILSKSVDN------EIVLWEPK-MKEQSPGEGTADILQ-KYPVPECDIWFIKFSC---DFH  302 (346)
Q Consensus       242 -----~i~~~~-~~--~~~l~~~~~d~------~i~iwd~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~---~~~  302 (346)
                           .+..++ |+  |++|+++..+.      +|.+|++. +++.       ..+. ....+...+..++|+|   |+ 
T Consensus       250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-------~~~~~~~~~~~~~~~~~a~sp~~~dg-  321 (365)
T 1jof_A          250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-------EKQLFLSPTPTSGGHSNAVSPCPWSD-  321 (365)
T ss_dssp             TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-------EEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred             cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-------EEeeeeeecCCCCcccceecCCCcCC-
Confidence                 477888 87  77887776543      89999996 3331       0111 1222344567789999   78 


Q ss_pred             cceEEEEcC-CCcEEEEEcCCC
Q 019117          303 YNAAAIGNR-EGKIFVWELQSS  323 (346)
Q Consensus       303 ~~~l~~~~~-dg~i~iwd~~~~  323 (346)
                       ++|++++. ++.|.+|++...
T Consensus       322 -~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          322 -EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -TEEEEECSSSCEEEEEEEETT
T ss_pred             -CEEEEEEcCCCeEEEEEEchh
Confidence             67877775 589999999876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.84  E-value=1.3e-18  Score=144.73  Aligned_cols=285  Identities=11%  Similarity=0.016  Sum_probs=179.2

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC----------Cc-EEEEEeccCceeeeEeeeecCC-CccceEEEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----------NR-VTVYQCLEGGVIAALQSYVDED-KEESFYTVS   90 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~----------~~-v~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~   90 (346)
                      .++...+..+..+  .++|+|    ++++++++..          ++ |.+||..+.+.+..+....... +......++
T Consensus        41 ~~~~~~i~~g~~p--~i~~sp----dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~  114 (361)
T 2oiz_A           41 GKFLGMVPTAFNG--HVQVSN----DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFR  114 (361)
T ss_dssp             CCEEEEEECCEEE--EEEECT----TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEE
T ss_pred             CeEEEEecCCCCC--ceEECC----CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEE
Confidence            3445556556555  899999    7888888752          23 9999998888777765421100 112222344


Q ss_pred             EEEcCCCCcEEEEeec--CCeEEEEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEE
Q 019117           91 WACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILI  166 (346)
Q Consensus        91 ~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~  166 (346)
                        ++|+|+ +|+++..  ++.|.+||+.+++.+.. +... + ...+.+.|.+...+++.+.||.+.+|++.. ++....
T Consensus       115 --~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          115 --QTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             --ECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             --ECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence              459999 8887764  58999999999988877 6532 2 233667785557888899999999999865 554422


Q ss_pred             ec---ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          167 FA---GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       167 ~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ..   .......++ .+.++| ++..++..+.++.|.++|+...............       .. ....   ...+...
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-------~~-~~~~---~~~p~g~  256 (361)
T 2oiz_A          190 SRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN-------DE-DKAK---NWVPGGY  256 (361)
T ss_dssp             EECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC-------HH-HHHT---TCEECCS
T ss_pred             ccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccC-------cc-cccc---ccccCCe
Confidence            11   000122222 333455 4555666678899999998752211110000000       00 0000   0000111


Q ss_pred             EEEEec--CCEEEEEee-----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117          244 DCNRWL--GDFILSKSV-----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      ..++++  ++.++++..           .+.|.+||+.+.+         .+..+..+.  +.+++|+||+  ++|+++.
T Consensus       257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---------~v~~i~~~~--p~~ia~spdg--~~l~v~n  323 (361)
T 2oiz_A          257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---------RVARIPGRD--ALSMTIDQQR--NLMLTLD  323 (361)
T ss_dssp             SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---------EEEEEECTT--CCEEEEETTT--TEEEEEC
T ss_pred             eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---------EEEEEecCC--eeEEEECCCC--CEEEEeC
Confidence            113444  566666543           3589999999877         677777666  8999999999  5777777


Q ss_pred             CCCcEEEEEcCCC--Ccceee-eeeeeEEEEEecCCCC
Q 019117          311 REGKIFVWELQSS--PPVLIA-RLICFSLHVKYNPQSV  345 (346)
Q Consensus       311 ~dg~i~iwd~~~~--~~~~~~-~~~~~~~~~~~spdg~  345 (346)
                      . +.|.+||..++  +.+..+ .....+..++++|||+
T Consensus       324 ~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          324 G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            6 99999999999  655553 4556689999999997

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=1.3e-19  Score=160.77  Aligned_cols=215  Identities=11%  Similarity=-0.009  Sum_probs=146.4

Q ss_pred             ccceEEEEEEEcCCCCcEEEEeec-CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC---CCCEEEEec
Q 019117           83 EESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNV  158 (346)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~  158 (346)
                      ...|+.++++  |||+ .||.++. ||+++||++.+++..+....+...+..++|+| + +++++++.   +....+|.+
T Consensus        21 ~~~~~~~~~~--~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGV--VDGD-KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEE--ETTT-EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecC--CCCC-eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEE
Confidence            3457767766  9999 8888776 99999999977665554443446899999999 6 77777765   455666655


Q ss_pred             CC---CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          159 QT---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       159 ~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      ..   +... .+.    ....+...+|+|++...+++.+.++.+.+||+.+.+                        ...
T Consensus        96 ~~~~~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~------------------------~~~  146 (582)
T 3o4h_A           96 NTSRPGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG------------------------LRE  146 (582)
T ss_dssp             ETTSTTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE------------------------EEE
T ss_pred             eccCCCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc------------------------EEE
Confidence            43   3322 443    222344667887343444555555556699998732                        112


Q ss_pred             EeecccceEEEEec--CCEEEEEeec----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          236 ASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       236 ~~~~~~~i~~~~~~--~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                      +..+..  .++.|+  |++|++++.+    +.|++||+.+++          ...+..+...+..++|||||  ++|+++
T Consensus       147 l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG--~~l~~~  212 (582)
T 3o4h_A          147 LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGM--KVTAGL  212 (582)
T ss_dssp             EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTS--CEEEEE
T ss_pred             eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCC--CEEEEc
Confidence            222333  566776  9999988887    789999998875          23556677788999999999  678888


Q ss_pred             cCCC--cEEEEEcCCCCcceeeeeeeeEEEEE--------ecCCCC
Q 019117          310 NREG--KIFVWELQSSPPVLIARLICFSLHVK--------YNPQSV  345 (346)
Q Consensus       310 ~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------~spdg~  345 (346)
                      ..++  .|++||+.+++..........+..+.        |||||+
T Consensus       213 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  258 (582)
T 3o4h_A          213 ETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR  258 (582)
T ss_dssp             ECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSC
T ss_pred             cCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCc
Confidence            8888  89999999987652222222344455        999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=2.7e-19  Score=162.80  Aligned_cols=264  Identities=8%  Similarity=0.023  Sum_probs=164.5

Q ss_pred             ceEEEEEEeecCCCccEEEEEcC---------Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGG---------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~---------~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      .|.+++|||    +|++||+++.         ++ |.+||+.+++.+....      ....+..++|+  |||+ .|+.+
T Consensus        61 ~~~~~~~Sp----Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------l~~~~~~~~~S--PDG~-~la~~  127 (719)
T 1z68_A           61 NASNYGLSP----DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------LPRPIQYLCWS--PVGS-KLAYV  127 (719)
T ss_dssp             TCSEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC------CCSSBCCEEEC--SSTT-CEEEE
T ss_pred             ceeeEEECC----CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee------cCcccccceEC--CCCC-EEEEE
Confidence            388999999    8899998876         34 9999988776521111      01234446665  9999 88887


Q ss_pred             ecCCeEEEEEccCcceeeee-ccCCCce-----------------EEEEEeCCCCceEEEeeCCC---------------
Q 019117          105 GINGIIRVIDVSNEKLHKSF-VGHGDSI-----------------NEIRTQPLKPSLVVSASKDE---------------  151 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~d~---------------  151 (346)
                      . ++.|++|++.+++..+.. .++...|                 .+++|+| +++.|++++.|.               
T Consensus       128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~  205 (719)
T 1z68_A          128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQ  205 (719)
T ss_dssp             E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred             E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCC
Confidence            5 789999999888765432 2332222                 4899999 888998887552               


Q ss_pred             -------------------CEEEEecCCCeeE--EEec---ccCCCCcceEEEEecCCCCcEEEEEecC----CeEEEEE
Q 019117          152 -------------------SVRLWNVQTGICI--LIFA---GAGGHRNEVLSVDFHPSDIYRIASCGMD----NTVKIWS  203 (346)
Q Consensus       152 -------------------~i~iwd~~~~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd  203 (346)
                                         .|++||+.+++..  ..+.   ...+|...+..++|+| ++.++++....    ..|.+||
T Consensus       206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEE
T ss_pred             CccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEc
Confidence                               7889999887643  1111   0115788899999999 67777774432    2488888


Q ss_pred             ----ccccceeeeeceeecCCCCCCCCccceece-EEEeecccceE-----EEEec--CCEEEE--EeecC--eEEEEcC
Q 019117          204 ----MKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASVHSNYVD-----CNRWL--GDFILS--KSVDN--EIVLWEP  267 (346)
Q Consensus       204 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-----~~~~~--~~~l~~--~~~d~--~i~iwd~  267 (346)
                          +.+.+..                    ... .....|...+.     .+.|+  |+.++.  ...++  .|.+||+
T Consensus       285 ~~~~~~~g~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~  344 (719)
T 1z68_A          285 FREDWQTWDCP--------------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD  344 (719)
T ss_dssp             ECSSSSSEECC--------------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred             ccCCCCCCceE--------------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence                5542210                    000 00124455554     66776  664433  44454  5777777


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC----CCcEEEEEcCC--CCc-ceeee-----eeeeE
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR----EGKIFVWELQS--SPP-VLIAR-----LICFS  335 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~----dg~i~iwd~~~--~~~-~~~~~-----~~~~~  335 (346)
                      .+++          ...+..+...+..+.++ +++ .+++++..    ++..++|.+..  +.. .....     ....+
T Consensus       345 ~~~~----------~~~lt~~~~~v~~~~~~-d~~-~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~  412 (719)
T 1z68_A          345 TVEN----------AIQITSGKWEAINIFRV-TQD-SLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY  412 (719)
T ss_dssp             CSTT----------CEECSCSSSCEEEEEEE-CSS-EEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred             CCCc----------eEecccCceEEEEEEEE-eCC-EEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce
Confidence            6653          22334445567777777 774 34444444    47889998764  321 11111     11345


Q ss_pred             EEEEecCCCCC
Q 019117          336 LHVKYNPQSVY  346 (346)
Q Consensus       336 ~~~~~spdg~~  346 (346)
                      ..+.|+|||++
T Consensus       413 ~~~~~s~dg~~  423 (719)
T 1z68_A          413 YTASFSDYAKY  423 (719)
T ss_dssp             EEEEECGGGSS
T ss_pred             EEEEECCCCCE
Confidence            67899999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=7.2e-17  Score=130.09  Aligned_cols=248  Identities=11%  Similarity=0.117  Sum_probs=168.4

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCCCCcEEEEeec-
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVDGIPFLVAGGI-  106 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~-  106 (346)
                      .++...+.+++++|    ++.++++...++ |.+||.. ++....+.... ...+...+..+++. .+++. ++++... 
T Consensus        26 ~g~~~~p~~v~~~~----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~-l~v~~~~~   98 (286)
T 1q7f_A           26 EGQFTEPSGVAVNA----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-RNSGD-IIVTERSP   98 (286)
T ss_dssp             TTCBSCEEEEEECT----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-TTTTE-EEEEECGG
T ss_pred             CCccCCCceEEECC----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-cCCCe-EEEEcCCC
Confidence            34556789999998    678888876665 9999965 55544443211 01122345556552 35665 5555533 


Q ss_pred             CCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          107 NGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      ++.|.+|| .+++.+..+. .+...+..+++.| +++++++...++.|.+||.. ++.+..+... .+...+.+++++| 
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~p~~i~~~~-  173 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVND-  173 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECS-
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCC-CccCCcEEEEECC-
Confidence            78999999 5677666664 3445789999999 77888887788999999964 6666665421 2445789999998 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec--ccceEEEEec--CCEEEEEeecC-
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH--SNYVDCNRWL--GDFILSKSVDN-  260 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~--~~~l~~~~~d~-  260 (346)
                      +++++++...++.|.+||....                        .+..+..+  ...+..++++  |+++++...++ 
T Consensus       174 ~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~  229 (286)
T 1q7f_A          174 KQEIFISDNRAHCVKVFNYEGQ------------------------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNF  229 (286)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCC------------------------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             CCCEEEEECCCCEEEEEcCCCC------------------------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence            8888888788899999997541                        11122211  2457788887  77777777776 


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      .|.+||... +         .+..+..+  ...+.+++++|++  .++++ +.|+.|++|++....++
T Consensus       230 ~i~~~~~~g-~---------~~~~~~~~~~~~~~~~i~~~~~g--~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          230 NLTIFTQDG-Q---------LISALESKVKHAQCFDVALMDDG--SVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             EEEEECTTS-C---------EEEEEEESSCCSCEEEEEEETTT--EEEEE-ETTTEEEEEECSCCCCT
T ss_pred             EEEEECCCC-C---------EEEEEcccCCCCcceeEEECCCC--cEEEE-CCCCeEEEEEccccccc
Confidence            999999653 2         23333332  2347789999998  56666 56899999998776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=4.4e-18  Score=155.07  Aligned_cols=275  Identities=11%  Similarity=0.050  Sum_probs=164.5

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------  107 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------  107 (346)
                      .....++|+|    ++++++++ ++.|++||+.+++....+..+...........  +.++|||+ +|+.++.+      
T Consensus        17 ~~~~~~~w~~----dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Spdg~-~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           17 LKLYSLRWIS----DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSIND--YSISPDGQ-FILLEYNYVKQWRH   88 (740)
T ss_dssp             CCCCCEEECS----SSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCE--EEECTTSS-EEEEEEEEEECSSS
T ss_pred             ccccccEECC----CCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccc--eEECCCCC-EEEEEECCeeeEEE
Confidence            3466899999    78899987 44599999999887666554322111111222  34569999 88888875      


Q ss_pred             ---CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce-------
Q 019117          108 ---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-------  177 (346)
Q Consensus       108 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-------  177 (346)
                         +.+.+||+.+++... +..|...+...+|+| +++.|+.+. ++.|++|++.+++..+....  ++...+       
T Consensus        89 ~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~--g~~~~~~~g~~~~  163 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWT--GKEDIIYNGITDW  163 (740)
T ss_dssp             CEEEEEEEEETTTTEECC-SSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSC--CBTTTEEESBCCH
T ss_pred             ccceEEEEEECCCCcEEE-cccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCC--CCccceecCcccc
Confidence               567799999988554 566778899999999 888888875 68999999988775443221  222222       


Q ss_pred             ----------EEEEecCCCCcEEEEEecCCe-EEEEEcccccee-----eeeceee--cCCCCC------CCCcc--cee
Q 019117          178 ----------LSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTY-----VEKSFTW--TDLPSK------FPTKY--VQF  231 (346)
Q Consensus       178 ----------~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~-----~~~~~~~--~~~~~~------~~~~~--~~~  231 (346)
                                ..+.|+| +++.|+..+.|.. +.+|++......     ......+  .+....      .....  ...
T Consensus       164 v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~  242 (740)
T 4a5s_A          164 VYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT  242 (740)
T ss_dssp             HHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred             cccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence                      3589999 8888887765543 777766432110     0000000  000000      00000  000


Q ss_pred             --ceEEEe------ecccceEEEEec--CCEEEEEee----cCeEEEEcCCCCCCCCCCccccccccc--cCCCcCee--
Q 019117          232 --PVFIAS------VHSNYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKY--PVPECDIW--  293 (346)
Q Consensus       232 --~~~~~~------~~~~~i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~--  293 (346)
                        ....+.      .|...+..+.|+  |+.++....    +..|.+||+.+++....   ...+..+  ..+...+.  
T Consensus       243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEECSSSCSSSS
T ss_pred             cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeeccCCceEccC
Confidence              111222      266778999998  665555433    34799999988651000   0011111  22333333  


Q ss_pred             ---EEEEeecCCcceEE-EEc-CCC--cEEEEEcCCCCcce
Q 019117          294 ---FIKFSCDFHYNAAA-IGN-REG--KIFVWELQSSPPVL  327 (346)
Q Consensus       294 ---~~~~s~~~~~~~l~-~~~-~dg--~i~iwd~~~~~~~~  327 (346)
                         ...|+|||+  .++ ..+ .+|  .|++||+.+++...
T Consensus       320 ~~~~p~fspDG~--~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          320 RPSEPHFTLDGN--SFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             SCCCCEECTTSS--EEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             cCCCceEcCCCC--EEEEEEEcCCCceEEEEEECCCCceEe
Confidence               678999994  444 444 343  68888988776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=6.9e-17  Score=132.79  Aligned_cols=246  Identities=11%  Similarity=0.018  Sum_probs=173.1

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCC-------------------------cEEEEEeccCceeeeEeeeecCCCccce
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGN-------------------------RVTVYQCLEGGVIAALQSYVDEDKEESF   86 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~-------------------------~v~i~~~~~~~~~~~~~~~~~~~~~~~v   86 (346)
                      .-+.+.+|+++|    +|+++++...+                         .|.+||..+++....+.    ..+-...
T Consensus        22 ~l~~v~~va~d~----~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~p   93 (329)
T 3fvz_A           22 LPGQVSGVALDS----KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----KNLFYLP   93 (329)
T ss_dssp             CCSCEEEEEECT----TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC----TTTCSSE
T ss_pred             ecCCceEEEECC----CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC----CCccCCc
Confidence            346799999998    78999998877                         49999987777654332    1123345


Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-eeeee---------ccCCCceEEEEEeCCCCceEEEee-CCCCEEE
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSF---------VGHGDSINEIRTQPLKPSLVVSAS-KDESVRL  155 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~i  155 (346)
                      ..+++.  ++|+ ++++...++.|++||..... .+..+         ..+-.....++++|.++.++++.+ .++.|++
T Consensus        94 ~gia~d--~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           94 HGLSID--TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             EEEEEC--TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             eEEEEC--CCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            556655  9998 88888889999999976542 44444         234457899999985567777775 6899999


Q ss_pred             EecCCCeeEEEecccC-------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117          156 WNVQTGICILIFAGAG-------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  228 (346)
Q Consensus       156 wd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
                      || .+++.+..+....       ++-..+..++++|+++.++++...++.|++||..+.+.                   
T Consensus       171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-------------------  230 (329)
T 3fvz_A          171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-------------------  230 (329)
T ss_dssp             EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------
T ss_pred             Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-------------------
Confidence            99 5677777764211       12244899999993388888888899999999985221                   


Q ss_pred             ceeceEEE--eecccceEEEEec--------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEE
Q 019117          229 VQFPVFIA--SVHSNYVDCNRWL--------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFI  295 (346)
Q Consensus       229 ~~~~~~~~--~~~~~~i~~~~~~--------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~  295 (346)
                          +..+  ..+...+..++++        ++..++...+.+|++|++.+++         .+..+   ..+...+..+
T Consensus       231 ----~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~i  297 (329)
T 3fvz_A          231 ----VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDI  297 (329)
T ss_dssp             ----EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEE
T ss_pred             ----EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEE
Confidence                1111  1233344455554        3333333445689999998876         34443   3455678999


Q ss_pred             EEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          296 KFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       296 ~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +++|++  .++++...++.|++|++...
T Consensus       298 a~~~dG--~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          298 VASEDG--TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EECTTS--EEEEEESSSCCEEEEEEEEC
T ss_pred             EECCCC--CEEEEECCCCEEEEEeCCcc
Confidence            999999  78899999999999998753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=6.9e-19  Score=148.64  Aligned_cols=256  Identities=12%  Similarity=0.028  Sum_probs=160.9

Q ss_pred             eEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      +..++|+|    +|+.|+.....    .|.+|++.+++.......     .........|  +|+|+ +|+.++.++.|.
T Consensus        38 ~~~~~~Sp----dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~~~--spdg~-~l~~~~~~~~l~  105 (396)
T 3c5m_A           38 FYQKCFTQ----DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-----KGDNTFGGFI--STDER-AFFYVKNELNLM  105 (396)
T ss_dssp             TTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-----SCBCTTTCEE--CTTSS-EEEEEETTTEEE
T ss_pred             eecCcCCC----CCCEEEEEEecCCCceEEEEECCCCcEEEeecC-----CCCccccceE--CCCCC-EEEEEEcCCcEE
Confidence            77889999    78887776543    388888776654332211     1111111344  49999 898988889999


Q ss_pred             EEEccCcceeeeeccCCCceEE-------------------EEEeCCCCceEEEe-----eCCCCEEEEecCCCeeEEEe
Q 019117          112 VIDVSNEKLHKSFVGHGDSINE-------------------IRTQPLKPSLVVSA-----SKDESVRLWNVQTGICILIF  167 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~  167 (346)
                      +||+.+++.......+......                   +.|+| +++.++..     ..+..|.+||+.+++.....
T Consensus       106 ~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          106 KVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH  184 (396)
T ss_dssp             EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred             EEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence            9999988766555544432222                   34566 55555443     35678999999988766555


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec--
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH--  239 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  239 (346)
                      .    +...+..+.|+|.++..|+..+.+      ..|.+||+....                        ...+..+  
T Consensus       185 ~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------~~~l~~~~~  236 (396)
T 3c5m_A          185 Q----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------------------------VRKIKEHAE  236 (396)
T ss_dssp             E----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------------------------CEESSCCCT
T ss_pred             c----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------------------------eeEeeccCC
Confidence            3    667789999998445545544433      357788876521                        1111111  


Q ss_pred             ccceEEEEec--CCEEEEEeec-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee-cCCcceEEEEc-
Q 019117          240 SNYVDCNRWL--GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGN-  310 (346)
Q Consensus       240 ~~~i~~~~~~--~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~-  310 (346)
                      ...+..+.|+  |++|+.++.+     +.|.+||+.+++.       ..+.....    .. +.|+| |+  +++++++ 
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg--~~l~~~~~  302 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDG--SLMVGDGC  302 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSS--SEEEEEEC
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCC--ceEEEecC
Confidence            2246677887  7777776654     5599999987652       11222221    22 88999 99  5666543 


Q ss_pred             ---------------CCCcEEEEEcCCCCcceeeeeee-----------eEEEEEecCCCCC
Q 019117          311 ---------------REGKIFVWELQSSPPVLIARLIC-----------FSLHVKYNPQSVY  346 (346)
Q Consensus       311 ---------------~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~spdg~~  346 (346)
                                     .++.|++||+.+++.........           ....+.|+|||++
T Consensus       303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCe
Confidence                           34789999999887544333332           1455789999863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=9.6e-18  Score=140.04  Aligned_cols=255  Identities=8%  Similarity=-0.047  Sum_probs=154.5

Q ss_pred             cEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc-CcceeeeeccC-CCceEEEE
Q 019117           59 RVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGH-GDSINEIR  135 (346)
Q Consensus        59 ~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~  135 (346)
                      +|.+|++.. ...+..+..... .....+..+++  +|+|+ +|++++.+ .|.+|++. +++........ .+.+..++
T Consensus        15 ~i~~~~~d~~~g~l~~~~~~~~-~~~~~~~~~a~--spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~   89 (365)
T 1jof_A           15 AIFTVQFDDEKLTCKLIKRTEI-PQDEPISWMTF--DHERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRAND   89 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEC-CTTCCCSEEEE--CTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred             cEEEEEEECCCCCEEEeeEEcc-CCCCCCcEEEE--CCCCC-EEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEE
Confidence            488887643 223333332110 11223444555  49998 88888887 99999997 77654433211 12356689


Q ss_pred             EeCCCCce--EEEee-------------CCCCEEEEecC-CCeeEEEeccc-CCCCcceEEEEecCCCCcEEEEEe-cCC
Q 019117          136 TQPLKPSL--VVSAS-------------KDESVRLWNVQ-TGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCG-MDN  197 (346)
Q Consensus       136 ~~~~~~~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~-~d~  197 (346)
                      |+| +++.  +++++             .++.+.+|++. +++....+... ..+...+.+++|+| ++++++++. .++
T Consensus        90 ~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~  167 (365)
T 1jof_A           90 ADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTAN  167 (365)
T ss_dssp             TTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTT
T ss_pred             ECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCC
Confidence            999 7773  55553             68999999997 46554433310 01456789999999 787777665 467


Q ss_pred             eEEEEEcc-ccceeeeeceeecCCCCCCCCccceeceEEEe--ecccceEEEEec--CCEEEEEee-cCeEEEEcCCC--
Q 019117          198 TVKIWSMK-EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKM--  269 (346)
Q Consensus       198 ~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~--  269 (346)
                      .|.+||+. +.+.                     ..+..+.  .|...+..++|+  |+++++++. ++.|.+|+++.  
T Consensus       168 ~v~~~~~~~~g~~---------------------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  226 (365)
T 1jof_A          168 KLWTHRKLASGEV---------------------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEEECTTSCE---------------------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEEEEECCCCCE---------------------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            99999997 4221                     0111222  235568888898  778877765 78999998753  


Q ss_pred             CCCCCCCcccccccccc----CCCc------CeeEEE-EeecCCcceEEEEcCC-C-----cEEEEEcC-CCCcceeee-
Q 019117          270 KEQSPGEGTADILQKYP----VPEC------DIWFIK-FSCDFHYNAAAIGNRE-G-----KIFVWELQ-SSPPVLIAR-  330 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~----~~~~------~v~~~~-~s~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~~~-  330 (346)
                      ++....   ...+..+.    ++..      .+..++ |+||+  ++|+++..+ +     .|.+|++. +++...... 
T Consensus       227 g~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG--~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~  301 (365)
T 1jof_A          227 HMPVYT---HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL  301 (365)
T ss_dssp             CCEEEE---EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred             CcEEEc---cceEEcCCCCcCCcccccccccccccEEEECCCC--CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence            321000   00111121    1222      478899 99999  566555432 2     89999996 565433221 


Q ss_pred             e---eeeEEEEEecC---CCCC
Q 019117          331 L---ICFSLHVKYNP---QSVY  346 (346)
Q Consensus       331 ~---~~~~~~~~~sp---dg~~  346 (346)
                      .   ...+..++|+|   ||+|
T Consensus       302 ~~~~~~~~~~~a~sp~~~dg~~  323 (365)
T 1jof_A          302 SPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             EECSSCCTTCCCEEECTTCTTE
T ss_pred             eecCCCCcccceecCCCcCCCE
Confidence            2   22356789999   7874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1.8e-17  Score=149.51  Aligned_cols=250  Identities=9%  Similarity=-0.021  Sum_probs=163.6

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEE--cCCc-EEEEEeccCceeeeEeeeecCCCccceE---------EEEEEEc
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATV--GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY---------TVSWACN   94 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~--~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~   94 (346)
                      ..+.+|...|..++|++    +.-++++.  +.++ ..||....+.....+..     +...+.         ...|+.+
T Consensus        17 ~~~~~~~~~~~~~~~s~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           17 ALVASRSGRPACVGAVG----DEVWWVAPRPAEAGRATLVRRRADGAEESALP-----APWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             HHHHHTCSCCEEEEEET----TEEEEEEEETTTTTEEEEEEECTTSCEEESSC-----TTCCBCCCGGGTCCCCEEEECC
T ss_pred             HHHhhcCCccceeEEcC----CeEEEEecCcccCCcEEEEEECCCCCcceeCC-----CCccccccccccCCccceeeee
Confidence            34678999999999997    55666666  4455 88898655544443332     222222         3445445


Q ss_pred             CCCCcE-EEEee-cCCeEEEEEcc--C-cceeeeecc-----CCCceEEEEEeCCCCceEEEeeCC----------CCEE
Q 019117           95 VDGIPF-LVAGG-INGIIRVIDVS--N-EKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD----------ESVR  154 (346)
Q Consensus        95 ~~~~~~-l~~~~-~dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------~~i~  154 (346)
                      |||+ . |+.++ .+..|.++++.  . ++ ...+..     |...+..++|+| +++.|++++.+          ..|+
T Consensus        88 PDg~-~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           88 PAGG-PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             SSSS-CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             cCCC-eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEE
Confidence            9999 5 55444 35667777765  2 33 344444     667889999999 88888888876          5899


Q ss_pred             EEecCC------CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC--------CeEEEEEcc-ccceeeeeceeecC
Q 019117          155 LWNVQT------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMK-EFWTYVEKSFTWTD  219 (346)
Q Consensus       155 iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~  219 (346)
                      +||+.+      ++......   .+...+..++|+| ++++|+.++.+        ..|.+||+. +...          
T Consensus       165 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~----------  230 (662)
T 3azo_A          165 AVPLDGSAAADRSAVRELSD---DAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF----------  230 (662)
T ss_dssp             EEETTSTTTTCGGGSEESSC---SCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE----------
T ss_pred             EEECCCCccccCCceeEEEe---cCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc----------
Confidence            999987      55443330   2456788899999 88888877654        379999998 3210          


Q ss_pred             CCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC--eEEEEcCCCCCCCCCCccccccccccCCCc-----
Q 019117          220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPEC-----  290 (346)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----  290 (346)
                                .........|...+..+.|+  |++++++..++  .|.+||+.+++..         .....+..     
T Consensus       231 ----------~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~---------~l~~~~~~~~~p~  291 (662)
T 3azo_A          231 ----------ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT---------QLCRREEEFAGPL  291 (662)
T ss_dssp             ----------EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE---------ESSCCSSBSSCCC
T ss_pred             ----------cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee---------ecccccccccCcc
Confidence                      01222333456788999998  77778887788  6666676555421         11111111     


Q ss_pred             ---CeeEEEEeecCCcceEEEEcCCCcEEEE--EcCCCC
Q 019117          291 ---DIWFIKFSCDFHYNAAAIGNREGKIFVW--ELQSSP  324 (346)
Q Consensus       291 ---~v~~~~~s~~~~~~~l~~~~~dg~i~iw--d~~~~~  324 (346)
                         .+..++|++++  .++++++. +.++||  |+.+++
T Consensus       292 w~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          292 WTPGMRWFAPLANG--LIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             CSTTCCSEEECTTS--CEEEEEBS-SSCEEEEEETTTTE
T ss_pred             ccccCceEeEeCCC--EEEEEEEc-CccEEEEEECCCCc
Confidence               14568899988  68888888 999999  555554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=1.8e-16  Score=130.68  Aligned_cols=265  Identities=12%  Similarity=0.001  Sum_probs=168.8

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..|.+++|+|    ++..++..+.++ ++.|   .++....+..     +...+..++|.  ++|+ +++++..++.|.+
T Consensus         6 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~--~~g~-l~~~~~~~~~i~~   70 (333)
T 2dg1_A            6 QDLPTLFYSG----KSNSAVPIISESELQTI---TAEPWLEISK-----KGLQLEGLNFD--RQGQ-LFLLDVFEGNIFK   70 (333)
T ss_dssp             CCCCBCCSCG----GGGCSSCCCCGGGSCEE---ECEEEEEEES-----SCCCEEEEEEC--TTSC-EEEEETTTCEEEE
T ss_pred             cccceeeecC----CccceeEEeecccCccc---ccceeEEEec-----cCccccCcEEC--CCCC-EEEEECCCCEEEE
Confidence            3467788888    445555555454 7888   2344443332     33345566665  8898 8888888999999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC----CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      ||..+++.......+...+.+++++| ++.++++...+    +.|.+||..+++....+... .+...+.+++++| ++.
T Consensus        71 ~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~-~g~  147 (333)
T 2dg1_A           71 INPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDS-KGG  147 (333)
T ss_dssp             ECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECT-TSC
T ss_pred             EeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-ccCCcccceEECC-CCC
Confidence            99988876654445667899999999 77777777666    68999999877654333211 2456789999999 777


Q ss_pred             EEEEEec------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE-EEeec
Q 019117          189 RIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVD  259 (346)
Q Consensus       189 ~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~~~~d  259 (346)
                      ++++...      .+.|..+|....+                        ...+..+...+..+.|+  ++.++ +.+.+
T Consensus       148 l~v~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~  203 (333)
T 2dg1_A          148 FYFTDFRGYSTNPLGGVYYVSPDFRT------------------------VTPIIQNISVANGIALSTDEKVLWVTETTA  203 (333)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCC------------------------EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             EEEEeccccccCCCceEEEEeCCCCE------------------------EEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence            7776553      2455555544311                        11122233446778887  56554 44568


Q ss_pred             CeEEEEcCCCC-CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-----
Q 019117          260 NEIVLWEPKMK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-----  333 (346)
Q Consensus       260 ~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  333 (346)
                      +.|.+||+.+. ....... ......+..+ ..+..+++++++  .++++...++.|.+||. +++.+..+....     
T Consensus       204 ~~i~~~d~~~~g~~~~~~~-~~~~~~~~~~-~~~~~i~~d~~G--~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~  278 (333)
T 2dg1_A          204 NRLHRIALEDDGVTIQPFG-ATIPYYFTGH-EGPDSCCIDSDD--NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH  278 (333)
T ss_dssp             TEEEEEEECTTSSSEEEEE-EEEEEECCSS-SEEEEEEEBTTC--CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred             CeEEEEEecCCCcCccccc-ceEEEecCCC-CCCCceEECCCC--CEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccc
Confidence            89999998642 2100000 0011112222 357789999998  56777767789999998 455444444432     


Q ss_pred             --eEEEEEecCCCC
Q 019117          334 --FSLHVKYNPQSV  345 (346)
Q Consensus       334 --~~~~~~~spdg~  345 (346)
                        .+..++|+|||+
T Consensus       279 ~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          279 MLRSTHPQFIPGTN  292 (333)
T ss_dssp             SCBCCEEEECTTSC
T ss_pred             ccCcceEEECCCCC
Confidence              478899999974

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=6.1e-15  Score=121.03  Aligned_cols=253  Identities=6%  Similarity=-0.081  Sum_probs=175.7

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .....+.+..     +.++++...++ |.+||..+++.+..+..      ......+++.  ++++ ++++...++.|.+
T Consensus        44 ~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~~------~~~p~~i~~~--~~g~-lyv~~~~~~~v~~  109 (328)
T 3dsm_A           44 DVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRITG------FTSPRYIHFL--SDEK-AYVTQIWDYRIFI  109 (328)
T ss_dssp             SCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEEC------CSSEEEEEEE--ETTE-EEEEEBSCSEEEE
T ss_pred             ccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcCC------CCCCcEEEEe--CCCe-EEEEECCCCeEEE
Confidence            4467787753     46666666545 99999999888777742      2345556665  7775 5555547899999


Q ss_pred             EEccCcceeeeeccCC-----CceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          113 IDVSNEKLHKSFVGHG-----DSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      ||..+++....+....     .....+++ . ++.++++.. .++.|.++|+.+++.+..+.    .......++++| +
T Consensus       110 iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~----~g~~p~~i~~~~-d  182 (328)
T 3dsm_A          110 INPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELT----IGIQPTSLVMDK-Y  182 (328)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEE----CSSCBCCCEECT-T
T ss_pred             EECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEE----cCCCccceEEcC-C
Confidence            9999998877765433     14556777 3 555555554 48899999999999888876    334567889998 7


Q ss_pred             CcEEEEEecC----------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEE
Q 019117          187 IYRIASCGMD----------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFI  253 (346)
Q Consensus       187 ~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l  253 (346)
                      +++++++..+          +.|.++|..+.+                       ....+... ......++++  ++.|
T Consensus       183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----------------------v~~~~~~~~g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----------------------VEKQFKFKLGDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----------------------EEEEEECCTTCCCEEEEECTTSCEE
T ss_pred             CCEEEEECCCccCCccccCCceEEEEECCCCe-----------------------EEEEEecCCCCCceeEEEecCCCEE
Confidence            8877777654          789999998732                       12222211 2356788888  6777


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCCCCcceee
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~  329 (346)
                      .++..  .|.+||..+++...       ...+.........++++|++. .++++.    ..++.|.+||.. ++.+..+
T Consensus       240 yv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~gi~vdp~~g-~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          240 YWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYYGLTVNPNNG-EVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEEEEEECTTTC-CEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEEcc--EEEEEECCCCceee-------eeeecCCCCceEEEEEcCCCC-eEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            77654  89999998876311       011111135678899999553 566666    678999999998 8888888


Q ss_pred             eeeeeEEEEEec
Q 019117          330 RLICFSLHVKYN  341 (346)
Q Consensus       330 ~~~~~~~~~~~s  341 (346)
                      .....+..++|-
T Consensus       309 ~~G~~P~~~~~~  320 (328)
T 3dsm_A          309 YVGIIPGAFCWK  320 (328)
T ss_dssp             EEEESEEEEEEE
T ss_pred             EeccCcceEEEe
Confidence            777777877774

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=3.4e-16  Score=141.09  Aligned_cols=260  Identities=8%  Similarity=-0.029  Sum_probs=154.8

Q ss_pred             eecccCCCceE---------EEEEE--eecCCCccE-EEEEcCCc--EEEEEec-cC-ceeeeEeeeecCCCccceEEEE
Q 019117           27 NKLQEGKRPLY---------AVVFN--FIDSRYFNV-FATVGGNR--VTVYQCL-EG-GVIAALQSYVDEDKEESFYTVS   90 (346)
Q Consensus        27 ~~~~~h~~~v~---------~~~~~--p~~~~~~~~-la~~~~~~--v~i~~~~-~~-~~~~~~~~~~~~~~~~~v~~~~   90 (346)
                      ..+..|...+.         ...|+  |    +|+. |+.++...  |.+++.. ++ .....+.......+...+..++
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SP----Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~  136 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRP----AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV  136 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCS----SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE
T ss_pred             ceeCCCCccccccccccCCccceeeeec----CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE
Confidence            34555655555         56666  7    6777 77766544  5555543 01 3333333211111344555566


Q ss_pred             EEEcCCCCcEEEEeecC----------CeEEEEEccC------cceeeeec-cCCCceEEEEEeCCCCceEEEeeCC---
Q 019117           91 WACNVDGIPFLVAGGIN----------GIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKD---  150 (346)
Q Consensus        91 ~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---  150 (346)
                      |+  |||+ .|+.++.+          ..|.+||+.+      ++.. .+. .+...+..++|+| +++.|+.++.+   
T Consensus       137 ~s--pDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~  211 (662)
T 3azo_A          137 LL--PERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPR  211 (662)
T ss_dssp             EE--TTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECT-TSSEEEEEEECTTC
T ss_pred             EC--CCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECC-CCCEEEEEECCCCC
Confidence            65  9999 88888776          5899999988      5543 444 5567788999999 88888877754   


Q ss_pred             -----CCEEEEecC-CC---eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC--eEEEEEccccceeeeeceeecC
Q 019117          151 -----ESVRLWNVQ-TG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTD  219 (346)
Q Consensus       151 -----~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~  219 (346)
                           ..|.+||+. ++   +......   ++...+..++|+| ++++++++..++  .|.+||+...+......     
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~---~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-----  282 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRTLLG---GPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCR-----  282 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEEEEE---ETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSC-----
T ss_pred             CCCCCcEEEEEEECCCCcccccEEeCC---CCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeeccc-----
Confidence                 379999998 56   4333333   3578899999999 777888888888  55555554422100000     


Q ss_pred             CCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE--cCCCCCCCCCCccccccccccCCCcCeeEE
Q 019117          220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW--EPKMKEQSPGEGTADILQKYPVPECDIWFI  295 (346)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  295 (346)
                      ....     ...+    . -...+..+.|+  ++++++++. +.++||  |+.+++          +..+..+...+..+
T Consensus       283 ~~~~-----~~~p----~-w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~  341 (662)
T 3azo_A          283 REEE-----FAGP----L-WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE----------LVDAAGPWTEWAAT  341 (662)
T ss_dssp             CSSB-----SSCC----C-CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE----------EEECCSSCCEEEEE
T ss_pred             cccc-----ccCc----c-ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc----------EEEecCCCCeEEEE
Confidence            0000     0000    0 00013456665  678888888 999999  444332          34555566666655


Q ss_pred             EEeecCCcceEEEEcCCC--cEEEEEcCCCCcc
Q 019117          296 KFSCDFHYNAAAIGNREG--KIFVWELQSSPPV  326 (346)
Q Consensus       296 ~~s~~~~~~~l~~~~~dg--~i~iwd~~~~~~~  326 (346)
                       ++++++..++++++.+.  .|.+||+.+++..
T Consensus       342 -~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          342 -LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             -EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             -EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence             25666434455555554  4666677677643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.9e-16  Score=133.30  Aligned_cols=213  Identities=10%  Similarity=-0.013  Sum_probs=144.4

Q ss_pred             EEcCCCCcEEEEeec-CC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           92 ACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        92 ~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      .++|||+ +|+.++. ++  .|.+||+.+++......++...+..+.|+| +++.|+.++.++.|++||+.+++....+.
T Consensus        42 ~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           42 CFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             cCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            3459999 7777776 66  488889999888777777766666788999 88999999999999999999988776665


Q ss_pred             ccCCCCcceEEEE--ecCCCCcEEEEE----------------------ecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117          169 GAGGHRNEVLSVD--FHPSDIYRIASC----------------------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  224 (346)
Q Consensus       169 ~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (346)
                         .+...+....  ++| ++.+++..                      ..+..|.+||+.+.+                
T Consensus       120 ---~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~----------------  179 (388)
T 3pe7_A          120 ---VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE----------------  179 (388)
T ss_dssp             ---CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------------
T ss_pred             ---chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----------------
Confidence               3455554443  477 77777642                      234678889988732                


Q ss_pred             CCccceeceEEEeecccceEEEEecC---CEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCCC--cCee
Q 019117          225 PTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIW  293 (346)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~  293 (346)
                              ...+..+...+..+.|++   +.|+....+      ..|.++|+...+          ...+..+.  ..+.
T Consensus       180 --------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~  241 (388)
T 3pe7_A          180 --------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGESCT  241 (388)
T ss_dssp             --------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEEEE
T ss_pred             --------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcccc
Confidence                    233445666778888864   566666543      378888876654          12222222  3577


Q ss_pred             EEEEeecCCcceEEEEcC-CC----cEEEEEcCCCCcceeeeeeee------EEEEEecCCCCC
Q 019117          294 FIKFSCDFHYNAAAIGNR-EG----KIFVWELQSSPPVLIARLICF------SLHVKYNPQSVY  346 (346)
Q Consensus       294 ~~~~s~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~------~~~~~~spdg~~  346 (346)
                      ..+|+||+  +.|+..+. ++    .|++||+.+++........+.      ...+.|+|||++
T Consensus       242 ~~~~spdg--~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~  303 (388)
T 3pe7_A          242 HEFWVPDG--SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD  303 (388)
T ss_dssp             EEEECTTS--SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC
T ss_pred             cceECCCC--CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc
Confidence            88999999  44544332 22    399999999986554444431      112368898863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=1.9e-15  Score=124.17  Aligned_cols=223  Identities=12%  Similarity=0.038  Sum_probs=154.1

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecC------------------------CeEEEEEccCcceeeeec-cCCCceEEEEEeC
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGIN------------------------GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQP  138 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~  138 (346)
                      ..+..+++.  ++|+ ++++...+                        +.|.+||..+++.+..+. ++-.....++++|
T Consensus        24 ~~v~~va~d--~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           24 GQVSGVALD--SKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             SCEEEEEEC--TTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             CCceEEEEC--CCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            456666665  8998 77777766                        479999998888776654 3445789999999


Q ss_pred             CCCceEEEeeCCCCEEEEecCCCe-eEEEeccc------CCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcccccee
Q 019117          139 LKPSLVVSASKDESVRLWNVQTGI-CILIFAGA------GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTY  210 (346)
Q Consensus       139 ~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~  210 (346)
                       +++++++...++.|++||..... .+..+...      .++...+..++++|.++.++++.+ .++.|++||... .  
T Consensus       101 -~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~--  176 (329)
T 3fvz_A          101 -DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K--  176 (329)
T ss_dssp             -TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C--
T ss_pred             -CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C--
Confidence             78888888889999999986432 45554210      134457899999985677777776 689999999543 1  


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEe----------ecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIAS----------VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEG  277 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~  277 (346)
                                           .+..+.          .+-.....++++   +.++++...+++|++|+..+++      
T Consensus       177 ---------------------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~------  229 (329)
T 3fvz_A          177 ---------------------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE------  229 (329)
T ss_dssp             ---------------------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------
T ss_pred             ---------------------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc------
Confidence                                 111111          122336778886   4566666778999999998665      


Q ss_pred             cccccccc--cCCCcCeeEEEEee------cCCcceEEEEcCCCcEEEEEcCCCCcceeee----eeeeEEEEEecCCCC
Q 019117          278 TADILQKY--PVPECDIWFIKFSC------DFHYNAAAIGNREGKIFVWELQSSPPVLIAR----LICFSLHVKYNPQSV  345 (346)
Q Consensus       278 ~~~~~~~~--~~~~~~v~~~~~s~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~spdg~  345 (346)
                         .+..+  ..+...+..++|+|      ++  ...++...+..|++||+.+++.+..+.    ....+..++++|||.
T Consensus       230 ---~~~~~~~~~~~~~~~~~~~~pg~~~~~~g--~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          230 ---FVREIKHASFGRNVFAISYIPGFLFAVNG--KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT  304 (329)
T ss_dssp             ---EEEEECCTTTTTCEEEEEEETTEEEEEEC--CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred             ---EEEEEeccccCCCcceeeecCCEEEEeCC--CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence               33333  23445778889998      33  233333445689999999998766542    223478899999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=5.6e-15  Score=118.96  Aligned_cols=217  Identities=10%  Similarity=0.030  Sum_probs=150.6

Q ss_pred             cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec------cCCCceEEEEEeCCCCceEEEeeC-CCCEEEE
Q 019117           84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASK-DESVRLW  156 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iw  156 (346)
                      .....+++.  ++|. ++++...++.|.+||.. ++.+..+.      ++...+..+++.+.++.++++... ++.|.+|
T Consensus        30 ~~p~~v~~~--~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           30 TEPSGVAVN--AQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             SCEEEEEEC--TTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCCceEEEC--CCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            344555554  8888 88888889999999977 55555553      244578899995326666666543 7899999


Q ss_pred             ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      | .+++.+..+..  .+...+.+++++| +++++++...++.|.+||....                        .+..+
T Consensus       106 d-~~g~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~  157 (286)
T 1q7f_A          106 N-QYGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN------------------------VLHKF  157 (286)
T ss_dssp             C-TTSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC------------------------EEEEE
T ss_pred             C-CCCcEEEEecC--ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCC------------------------EEEEe
Confidence            9 56777776642  2446789999998 7888888778899999996541                        11112


Q ss_pred             e--ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEc
Q 019117          237 S--VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       237 ~--~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      .  .+...+..++++  ++++++...++.|++||....          .+..+..  +...+..+++++++  .++++..
T Consensus       158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G--~l~v~~~  225 (286)
T 1q7f_A          158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--EILIADN  225 (286)
T ss_dssp             ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC--CEEEEEC
T ss_pred             CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCC--CEEEEeC
Confidence            1  233457888887  566666677999999997542          2233322  23568899999998  6777777


Q ss_pred             CCC-cEEEEEcCCCCcceeeeeee---eEEEEEecCCCC
Q 019117          311 REG-KIFVWELQSSPPVLIARLIC---FSLHVKYNPQSV  345 (346)
Q Consensus       311 ~dg-~i~iwd~~~~~~~~~~~~~~---~~~~~~~spdg~  345 (346)
                      .++ .|.+||.. ++.+..+....   .+..++++|+|+
T Consensus       226 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~  263 (286)
T 1q7f_A          226 HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS  263 (286)
T ss_dssp             SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred             CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc
Confidence            776 99999954 55444443322   267899999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.5e-14  Score=117.05  Aligned_cols=242  Identities=12%  Similarity=-0.010  Sum_probs=157.1

Q ss_pred             ecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .+..+.....+++|+|    +++ +++++..++ |..|+..++  ...+..     +...+..+++.  ++|+ ++++..
T Consensus        22 ~l~~~~~~~eg~~~d~----~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-----~~~~~~~l~~~--~dg~-l~v~~~   87 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVP----ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-----PSHHQNGHCLN--KQGH-LIACSH   87 (296)
T ss_dssp             EEECCCSSEEEEEEEG----GGTEEEEEEGGGTEEEEEETTSC--EEEEES-----SCSSEEEEEEC--TTCC-EEEEET
T ss_pred             EEecCCccccCCeEeC----CCCEEEEEeCCCCEEEEEECCCC--eEEEEC-----CCCCcceeeEC--CCCc-EEEEec
Confidence            3445666788999999    676 777776665 999997765  343332     34456656555  8998 777777


Q ss_pred             cCCeEEEEEccCcceeeeeccC----CCceEEEEEeCCCCceEEE----ee-------------CCCCEEEEecCCCeeE
Q 019117          106 INGIIRVIDVSNEKLHKSFVGH----GDSINEIRTQPLKPSLVVS----AS-------------KDESVRLWNVQTGICI  164 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s----~~-------------~d~~i~iwd~~~~~~~  164 (346)
                      .++.|.+||..+++........    ...+..++++| ++.++++    |+             ..+.|..++.. ++. 
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-  164 (296)
T 3e5z_A           88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-  164 (296)
T ss_dssp             TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred             CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence            6789999999888754433221    23567899999 7888887    33             12455555554 443 


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ..+.   .+...+..++|+| +++.+++.+.++.|.+|++........                 .  ...+..+...+.
T Consensus       165 ~~~~---~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~-----------------~--~~~~~~~~~~p~  221 (296)
T 3e5z_A          165 SAPI---RDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEY-----------------Q--GVHFTVEPGKTD  221 (296)
T ss_dssp             EEEE---CCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEE-----------------E--EEEECCSSSCCC
T ss_pred             EEee---cCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcC-----------------C--CeEeeCCCCCCC
Confidence            3333   3666789999999 777777777889999999873110000                 0  011122344456


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEcCCCcEEEEEcC
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      .++++  |++.++.  ++.|.+||.. ++         .+..+..+.. +.+++|. |++  ..|.+++.+ .+.-++..
T Consensus       222 ~i~~d~~G~l~v~~--~~~v~~~~~~-g~---------~~~~~~~~~~-~~~~~f~~~d~--~~L~v~t~~-~l~~~~~~  285 (296)
T 3e5z_A          222 GLRVDAGGLIWASA--GDGVHVLTPD-GD---------ELGRVLTPQT-TSNLCFGGPEG--RTLYMTVST-EFWSIETN  285 (296)
T ss_dssp             SEEEBTTSCEEEEE--TTEEEEECTT-SC---------EEEEEECSSC-CCEEEEESTTS--CEEEEEETT-EEEEEECS
T ss_pred             eEEECCCCCEEEEc--CCeEEEECCC-CC---------EEEEEECCCC-ceeEEEECCCC--CEEEEEcCC-eEEEEEcc
Confidence            67776  6655544  8899999986 33         4555666666 8999994 777  567776665 45556666


Q ss_pred             CCCc
Q 019117          322 SSPP  325 (346)
Q Consensus       322 ~~~~  325 (346)
                      +.+.
T Consensus       286 ~~~~  289 (296)
T 3e5z_A          286 VRGL  289 (296)
T ss_dssp             CCBC
T ss_pred             cccc
Confidence            5543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=4.6e-16  Score=140.77  Aligned_cols=246  Identities=10%  Similarity=-0.031  Sum_probs=157.8

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEE-----EcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFAT-----VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~-----~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      .+|...+..++|||    +|++||.     |+.+. |++||+.+++.+..  ...   .......++|+  |||+ .|+.
T Consensus       117 ~~~~~~~~~~~~SP----DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~---~~~~~~~~~ws--pDg~-~l~~  184 (695)
T 2bkl_A          117 KDGTVSLGTWAVSW----DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVI---EGGKYATPKWT--PDSK-GFYY  184 (695)
T ss_dssp             SSSCEEEEEEEECT----TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCB---SCCTTCCCEEC--TTSS-EEEE
T ss_pred             cCCCEEEEEEEECC----CCCEEEEEECCCCCceEEEEEEECCCCCCcCC--ccc---CcccccceEEe--cCCC-EEEE
Confidence            35666789999999    7888884     33334 99999988875411  000   11111345665  9999 8888


Q ss_pred             eecCCe-------------EEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCCC----CEEEEecCCCe
Q 019117          104 GGINGI-------------IRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGI  162 (346)
Q Consensus       104 ~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~  162 (346)
                      ++.+..             |++|++.+++    .+.....+...+..+.|+| ++++|+.++.++    .|.+|+..+++
T Consensus       185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence            887765             9999998876    3333344566889999999 777777766555    67777765554


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEe---cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  239 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
                      ... +.   .+...+....++. +. +++...   .++.|.+||+.+...                     .....+..+
T Consensus       264 ~~~-l~---~~~~~~~~~~~~~-g~-l~~~s~~~~~~~~l~~~d~~~~~~---------------------~~~~~l~~~  316 (695)
T 2bkl_A          264 FRL-LV---KGVGAKYEVHAWK-DR-FYVLTDEGAPRQRVFEVDPAKPAR---------------------ASWKEIVPE  316 (695)
T ss_dssp             CEE-EE---ECSSCCEEEEEET-TE-EEEEECTTCTTCEEEEEBTTBCSG---------------------GGCEEEECC
T ss_pred             eEE-ee---cCCCceEEEEecC-Cc-EEEEECCCCCCCEEEEEeCCCCCc---------------------cCCeEEecC
Confidence            433 33   2445556666643 44 555554   257899999876321                     001222222


Q ss_pred             --ccceEEEEec-CCEEEEEeecCeEEEEcCCC-CCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEE-EE---c
Q 019117          240 --SNYVDCNRWL-GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAA-IG---N  310 (346)
Q Consensus       240 --~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~-~~---~  310 (346)
                        ...+..+.++ +.++++...|+..+||.+.. ++         ....+..+ .+.+..++++|+++  .++ +.   .
T Consensus       317 ~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~d~~--~l~~~~ss~~  385 (695)
T 2bkl_A          317 DSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK---------PVRTVQLPGVGAASNLMGLEDLD--DAYYVFTSFT  385 (695)
T ss_dssp             CSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC---------EEEECCCSSSSEECCCBSCTTCS--EEEEEEEETT
T ss_pred             CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---------eeEEecCCCCeEEEEeecCCCCC--EEEEEEcCCC
Confidence              3456777777 66778888899988886652 22         23334443 45677788899884  444 32   3


Q ss_pred             CCCcEEEEEcCCCCcc
Q 019117          311 REGKIFVWELQSSPPV  326 (346)
Q Consensus       311 ~dg~i~iwd~~~~~~~  326 (346)
                      ..+.|++||+.+++..
T Consensus       386 ~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          386 TPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCCcEE
Confidence            4578999999988743

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=1.3e-16  Score=145.44  Aligned_cols=224  Identities=10%  Similarity=0.091  Sum_probs=145.4

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCc-----eEEEEEeCCCCceEEEeeCC---------CC
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-----INEIRTQPLKPSLVVSASKD---------ES  152 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~d---------~~  152 (346)
                      ..+.|+  |+|+ +++++  |+.|++||+.+++....+.+|...     ...+.|+| +++.|+.++.+         +.
T Consensus        20 ~~~~w~--~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           20 YSLRWI--SDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCEEEC--SSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccEEC--CCCc-EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceE
Confidence            346666  9998 88886  899999999999987777776542     24588999 88888888876         55


Q ss_pred             EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117          153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  232 (346)
Q Consensus       153 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
                      +.+||+.+++... +.   .+...+...+|+| +++.|+.+ .++.|.+||+..........   .           ...
T Consensus        94 ~~~~d~~~~~~~~-l~---~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~---~-----------g~~  153 (740)
T 4a5s_A           94 YDIYDLNKRQLIT-EE---RIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITW---T-----------GKE  153 (740)
T ss_dssp             EEEEETTTTEECC-SS---CCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCS---C-----------CBT
T ss_pred             EEEEECCCCcEEE-cc---cCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcC---C-----------CCc
Confidence            6799999987654 43   5778899999999 88878777 47899999997743211000   0           000


Q ss_pred             eEEEeeccc---------ceEEEEec--CCEEEEEeecC------------------------------------eEEEE
Q 019117          233 VFIASVHSN---------YVDCNRWL--GDFILSKSVDN------------------------------------EIVLW  265 (346)
Q Consensus       233 ~~~~~~~~~---------~i~~~~~~--~~~l~~~~~d~------------------------------------~i~iw  265 (346)
                      ...+.++.+         ....+.|+  |++|+.++.|.                                    +|++|
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            011122221         12346676  67777765432                                    46777


Q ss_pred             cCCC---CCCCCCCcccccccccc------CCCcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCCCC----c---
Q 019117          266 EPKM---KEQSPGEGTADILQKYP------VPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSP----P---  325 (346)
Q Consensus       266 d~~~---~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~~~----~---  325 (346)
                      |+.+   ++..       ....+.      .+...+..++|+||+  ++++..    +.+..|++||+.+++    .   
T Consensus       234 d~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~  304 (740)
T 4a5s_A          234 NTDSLSSVTNA-------TSIQITAPASMLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVA  304 (740)
T ss_dssp             ETTSCCSSSCC-------CEEEECCCHHHHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred             ECCCCCCCCcc-------eEEEecCCccCCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence            7776   4210       011111      356678999999999  544443    234579999999987    1   


Q ss_pred             ceee--eeeeeE-----EEEEecCCCC
Q 019117          326 VLIA--RLICFS-----LHVKYNPQSV  345 (346)
Q Consensus       326 ~~~~--~~~~~~-----~~~~~spdg~  345 (346)
                      ....  ...+.+     ....|||||+
T Consensus       305 ~~l~~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          305 RQHIEMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             GCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             EEeeeccCCceEccCcCCCceEcCCCC
Confidence            1111  112222     2688999997

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=3.8e-14  Score=116.74  Aligned_cols=242  Identities=10%  Similarity=0.013  Sum_probs=151.7

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ...+..+...+.+++|+|    ++++++++..++ |.+||..+++.......     +...+..+++.  ++|+ ++++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~i~~~--~dg~-l~v~~  104 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDR----QGQLFLLDVFEGNIFKINPETKEIKRPFVS-----HKANPAAIKIH--KDGR-LFVCY  104 (333)
T ss_dssp             EEEEESSCCCEEEEEECT----TSCEEEEETTTCEEEEECTTTCCEEEEEEC-----SSSSEEEEEEC--TTSC-EEEEE
T ss_pred             eEEEeccCccccCcEECC----CCCEEEEECCCCEEEEEeCCCCcEEEEeeC-----CCCCcceEEEC--CCCc-EEEEe
Confidence            344566777789999998    678888877666 99999876654433221     34567667665  8898 77776


Q ss_pred             ecC----CeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeC------CCCEEEEecCCCeeEEEecccCC
Q 019117          105 GIN----GIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus       105 ~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~  172 (346)
                      ..+    +.|.+||..+++....+.  .+...+.+++++| ++.++++...      .+.|..+|...++......    
T Consensus       105 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----  179 (333)
T 2dg1_A          105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----  179 (333)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----
T ss_pred             CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec----
Confidence            655    689999988776543332  2445789999999 7777776553      2456666665444433222    


Q ss_pred             CCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          173 HRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      ....+..++|+| +++ ++++...++.|.+||+......... ..             .........+ ..+..+.++  
T Consensus       180 ~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~-~~-------------~~~~~~~~~~-~~~~~i~~d~~  243 (333)
T 2dg1_A          180 NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQP-FG-------------ATIPYYFTGH-EGPDSCCIDSD  243 (333)
T ss_dssp             EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEE-EE-------------EEEEEECCSS-SEEEEEEEBTT
T ss_pred             CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCccc-cc-------------ceEEEecCCC-CCCCceEECCC
Confidence            334578999999 766 4555566889999998641100000 00             0000011111 356677887  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC------cCeeEEEEeecCCcceEEEEcCC
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE------CDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      |+++++...++.|.+||.. ++         .+..+..+.      ..+.+++|+||+  ..|+.++.+
T Consensus       244 G~l~v~~~~~~~v~~~d~~-g~---------~~~~~~~~~~~~g~~~~~~~~~~~~dg--~~L~v~~~~  300 (333)
T 2dg1_A          244 DNLYVAMYGQGRVLVFNKR-GY---------PIGQILIPGRDEGHMLRSTHPQFIPGT--NQLIICSND  300 (333)
T ss_dssp             CCEEEEEETTTEEEEECTT-SC---------EEEEEECTTGGGTCSCBCCEEEECTTS--CEEEEEEEC
T ss_pred             CCEEEEEcCCCEEEEECCC-CC---------EEEEEEcCCCccccccCcceEEECCCC--CEEEEEeCc
Confidence            6777766678899999984 33         233333322      268899999987  345444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=4.2e-15  Score=134.89  Aligned_cols=244  Identities=9%  Similarity=0.031  Sum_probs=158.3

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcC----C--cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGG----N--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~----~--~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      +|...+..++|||    +|++||.+..    +  .|++||+.+++.......      ...+..++|+  |||+ .|+.+
T Consensus       122 ~~~~~~~~~~~SP----Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~------~~~~~~~~ws--pDg~-~l~~~  188 (710)
T 2xdw_A          122 DGTVALRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE------RVKFSCMAWT--HDGK-GMFYN  188 (710)
T ss_dssp             TSCEEEEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE------EECSCCEEEC--TTSS-EEEEE
T ss_pred             CCCEEEEEEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc------CcccceEEEE--eCCC-EEEEE
Confidence            4555688999999    7888886643    2  499999988876553221      1123446666  9999 88887


Q ss_pred             ecCCe----------------EEEEEccCccee--e--eeccCCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecC
Q 019117          105 GINGI----------------IRVIDVSNEKLH--K--SFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQ  159 (346)
Q Consensus       105 ~~dg~----------------i~iwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~  159 (346)
                      +.++.                |.+|++.+++..  .  ....|...+..+.|+| ++++|+.++.     +..|.+||+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECc
Confidence            77665                999999887632  2  2233556688999999 7777776654     5689999997


Q ss_pred             C------Ce-eEEEecccCCCCcceEEEEecCCCCcEEE-EEecC---CeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117          160 T------GI-CILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  228 (346)
Q Consensus       160 ~------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
                      +      +. ....+.   .+...+.. .|+| ++..|+ .+..+   +.|.+||+.....                   
T Consensus       268 ~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------------------  323 (710)
T 2xdw_A          268 QESNGITGILKWVKLI---DNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEE-------------------  323 (710)
T ss_dssp             GSSSSSCSSCCCEEEE---CSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCG-------------------
T ss_pred             ccccccCCccceEEee---CCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCc-------------------
Confidence            6      43 344454   35555554 4777 555444 44333   3699999876310                   


Q ss_pred             ceeceEEEeeccc--ceEEEEec-C-CEEEEEeecCe--EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117          229 VQFPVFIASVHSN--YVDCNRWL-G-DFILSKSVDNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       229 ~~~~~~~~~~~~~--~i~~~~~~-~-~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                        .....+..|..  .+..+.|. + .++++...|+.  |.+|++.+++         .+..+..+.+.+..++++|++.
T Consensus       324 --~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---------~~~~l~~~~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          324 --SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---------LLKIFPLEVGSVVGYSGQKKDT  392 (710)
T ss_dssp             --GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECCCSSEEEEEECCTTCS
T ss_pred             --ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---------EEEecCCCCceEEEEecCCCCC
Confidence              01223333433  57778887 4 46667777775  5566765554         3455555667788899999884


Q ss_pred             cceEEEEc---CCCcEEEEEcCCCC
Q 019117          303 YNAAAIGN---REGKIFVWELQSSP  324 (346)
Q Consensus       303 ~~~l~~~~---~dg~i~iwd~~~~~  324 (346)
                       .++++.+   ..+.|++||+.+++
T Consensus       393 -~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          393 -EIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             -EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             -EEEEEEeCCCCCCEEEEEECCCCc
Confidence             2333322   45789999998877

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=7e-15  Score=121.81  Aligned_cols=219  Identities=11%  Similarity=0.017  Sum_probs=141.8

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---C--eEEEEEccCcceeeeeccCCCceEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---G--IIRVIDVSNEKLHKSFVGHGDSINEI  134 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~  134 (346)
                      |.+|++.+++... +         ..+...+|+  |||+ .|+..+.+   +  .|.+|++.+++.......+ . +..+
T Consensus        45 l~~~d~~~~~~~~-l---------~~~~~~~~S--pDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~  109 (347)
T 2gop_A           45 IVIENLKNNARRF-I---------ENATMPRIS--PDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSL  109 (347)
T ss_dssp             EEEEETTTCCEEE-E---------ESCEEEEEC--TTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEE
T ss_pred             EEEEeCCCCceEE-c---------ccCCCeEEC--CCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccce
Confidence            8899987765422 2         223445554  9999 77776643   3  4778888887765554433 3 9999


Q ss_pred             EEeCCCCceEEEeeC---------------------------CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          135 RTQPLKPSLVVSASK---------------------------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       135 ~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      +|+| +++.|+.++.                           ...|.+||+.+++.+..+.   . . .+..++|+| ++
T Consensus       110 ~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~-~~~~~~~sp-dg  182 (347)
T 2gop_A          110 EWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P-RFSSGIWHR-DK  182 (347)
T ss_dssp             EECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE---E-E-TTCEEEEET-TE
T ss_pred             eECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C-CcccccCCC-Ce
Confidence            9999 7777777653                           2579999999888756665   2 3 788999999 77


Q ss_pred             cEEEEEecCC-------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec-
Q 019117          188 YRIASCGMDN-------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-  259 (346)
Q Consensus       188 ~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-  259 (346)
                       +++++..++       ...+|.+....                        ...+..+ ..+..+..+|++|+.++.+ 
T Consensus       183 -~~~~~~~~~~~~~~~~~~~l~~~d~~~------------------------~~~l~~~-~~~~~~spdg~~l~~~~~~~  236 (347)
T 2gop_A          183 -IVVNVPHREIIPQYFKFWDIYIWEDGK------------------------EEKMFEK-VSFYAVDSDGERILLYGKPE  236 (347)
T ss_dssp             -EEEEEECCCSSCCSSCCEEEEEEETTE------------------------EEEEEEE-ESEEEEEECSSCEEEEECCS
T ss_pred             -EEEEEecccccccccccccEEEeCCCc------------------------eEEeccC-cceeeECCCCCEEEEEEccc
Confidence             777776542       34555444311                        1122222 3444443347777776644 


Q ss_pred             -------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeE-EEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          260 -------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       260 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                             ..|.+||  +++         .......+...+.. +.|+ |+   ++++++.++.++|| +.+++.......
T Consensus       237 ~~~~~~~~~l~~~d--~~~---------~~~l~~~~~~~~~~~~~~s-dg---~~~~~~~~~~~~l~-~~~g~~~~~~~~  300 (347)
T 2gop_A          237 KKYMSEHNKLYIYD--GKE---------VMGILDEVDRGVGQAKIKD-GK---VYFTLFEEGSVNLY-IWDGEIKPIAKG  300 (347)
T ss_dssp             SSCCCSSCEEEEEC--SSC---------EEESSTTCCSEEEEEEEET-TE---EEEEEEETTEEEEE-EESSSEEEEECS
T ss_pred             cCCccccceEEEEC--CCc---------eEeccccCCcccCCccEEc-Cc---EEEEEecCCcEEEE-EcCCceEEEecC
Confidence                   3688888  333         22223344566775 8898 65   78888899999999 886654444434


Q ss_pred             eeeEEEEEecC
Q 019117          332 ICFSLHVKYNP  342 (346)
Q Consensus       332 ~~~~~~~~~sp  342 (346)
                      .+.+..+.|+|
T Consensus       301 ~~~v~~~~~s~  311 (347)
T 2gop_A          301 RHWIMGFDVDE  311 (347)
T ss_dssp             SSEEEEEEESS
T ss_pred             CCeEEeeeeeC
Confidence            55678888887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=2.8e-15  Score=124.65  Aligned_cols=253  Identities=13%  Similarity=0.032  Sum_probs=157.0

Q ss_pred             cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccC-
Q 019117           59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH-  127 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-  127 (346)
                      .|.+||..+++.+..+..     ...+    .+.++|+|+ +++++.          .++.|.+||..+.+.+..+... 
T Consensus        32 ~v~v~D~~t~~~~~~i~~-----g~~p----~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPT-----AFNG----HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             EEEEEETTTCCEEEEEEC-----CEEE----EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             eEEEEECCCCeEEEEecC-----CCCC----ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            499999888877665542     1111    345569999 887775          3678999999998888777642 


Q ss_pred             -----CCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEE-ecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117          128 -----GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  199 (346)
Q Consensus       128 -----~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  199 (346)
                           ......++++| ++++|+++..  +++|.+||+.+++.+.. +.    ..+. ..+.+.|.+...+++.+.||.+
T Consensus       102 ~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~----~~~~-~~v~~~p~~~~~~~~~~~dg~~  175 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTA----AAGC-WSVIPQPNRPRSFMTICGDGGL  175 (361)
T ss_dssp             TBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGG----GTTE-EEEEECTTSSSEEEEEETTSSE
T ss_pred             cccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEec----CCCc-ceeEEcCCCCeeEEEECCCCcE
Confidence                 24567899999 7888887763  68999999999998887 65    2222 2355677455788888999999


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      .+|++.......... . .  ..            .+......+. .....+..++..+.++.|.++|+......... .
T Consensus       176 ~~v~~~~~g~~~~~~-~-~--~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~-~  238 (361)
T 2oiz_A          176 LTINLGEDGKVASQS-R-S--KQ------------MFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG-P  238 (361)
T ss_dssp             EEEEECTTSSEEEEE-E-C--CC------------CSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE-E
T ss_pred             EEEEECCCCcEeeec-c-c--cc------------eEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc-c
Confidence            999986511111000 0 0  00            0000000000 00111455666677899999998754311000 0


Q ss_pred             ccccc----cccCCCcCeeEEEEeecCCcceEEEEc----------CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117          279 ADILQ----KYPVPECDIWFIKFSCDFHYNAAAIGN----------REGKIFVWELQSSPPVLIARLICFSLHVKYNPQS  344 (346)
Q Consensus       279 ~~~~~----~~~~~~~~v~~~~~s~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg  344 (346)
                      .....    ...........++|+|++. .++++..          ..+.|.+||+.+++.+....... +..++|+|||
T Consensus       239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg  316 (361)
T 2oiz_A          239 WSLLNDEDKAKNWVPGGYNLVGLHRASG-RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQR  316 (361)
T ss_dssp             EESCCHHHHHTTCEECCSSCEEEETTTT-EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTT
T ss_pred             ccccCccccccccccCCeeEEEEecCCC-eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCC
Confidence            00000    0000011222378999984 3333332          13589999999998877777777 8999999999


Q ss_pred             CC
Q 019117          345 VY  346 (346)
Q Consensus       345 ~~  346 (346)
                      ++
T Consensus       317 ~~  318 (361)
T 2oiz_A          317 NL  318 (361)
T ss_dssp             TE
T ss_pred             CE
Confidence            74

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=5.3e-15  Score=118.05  Aligned_cols=239  Identities=9%  Similarity=-0.071  Sum_probs=155.7

Q ss_pred             ceEEEEEEeecCCCccEEE-EEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFA-TVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la-~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ...+++++|    ++.+++ +...++ |.+|+..+.... .+.    ......+..+++.  ++|+ ++++.. ++.|.+
T Consensus        25 ~p~~i~~~~----~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~----~~~~~~p~~i~~~--~~g~-l~v~~~-~~~i~~   91 (270)
T 1rwi_B           25 SPSGVAVDS----AGNVYVTSEGMYGRVVKLATGSTGTT-VLP----FNGLYQPQGLAVD--GAGT-VYVTDF-NNRVVT   91 (270)
T ss_dssp             CEEEEEECT----TCCEEEEECSSSCEEEEECC-----E-ECC----CCSCCSCCCEEEC--TTCC-EEEEET-TTEEEE
T ss_pred             CccceEECC----CCCEEEEccCCCCcEEEecCCCcccc-eEe----eCCcCCcceeEEC--CCCC-EEEEcC-CCEEEE
Confidence            678899988    678777 534444 999986543321 111    1122334445554  8887 666665 889999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      ||................+..+++.+ ++.++++...++.|.+|+..+........   .....+.+++++| +++++++
T Consensus        92 ~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~~~-~g~l~v~  166 (270)
T 1rwi_B           92 LAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDN-SGNVYVT  166 (270)
T ss_dssp             ECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCC---CSCCSCCCEEECT-TCCEEEE
T ss_pred             EeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeecc---ccCCCceeEEEeC-CCCEEEE
Confidence            99876543322222335789999999 77777777778899999865544332221   2334678999998 7787777


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ...++.|.+||......                       ......+...+..++++  |.++++...++.|.+|+....
T Consensus       167 ~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNNQ-----------------------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             EGGGTEEEEECTTTCCE-----------------------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             ECCCCEEEEEecCCCce-----------------------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            77788999999876221                       00011122456778887  566666667889999998764


Q ss_pred             CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      ..         ......+...+.++++++++  .++++...++.|+++++...+.
T Consensus       224 ~~---------~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          224 TS---------TVLPFTGLNTPLAVAVDSDR--TVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CC---------EECCCCSCSCEEEEEECTTC--CEEEEEGGGTEEEEECCCGGGS
T ss_pred             cc---------eeeccCCCCCceeEEECCCC--CEEEEECCCCEEEEEcCCCccc
Confidence            31         11111223468899999998  6888888999999999887653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=5e-13  Score=108.13  Aligned_cols=262  Identities=10%  Similarity=-0.033  Sum_probs=171.1

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCC-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGN-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      +..+...+.++++.|    ++.++++...+ +|.+||.. +. ...+.   .......+..+++.  ++|. ++++...+
T Consensus        10 ~~~~~~~~~~i~~d~----~g~l~v~~~~~~~v~~~d~~-~~-~~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~   77 (299)
T 2z2n_A           10 LTNQDTGPYGITVSD----KGKVWITQHKANMISCINLD-GK-ITEYP---LPTPDAKVMCLTIS--SDGE-VWFTENAA   77 (299)
T ss_dssp             CCSSSCCEEEEEECT----TSCEEEEETTTTEEEEECTT-CC-EEEEE---CSSTTCCEEEEEEC--TTSC-EEEEETTT
T ss_pred             CCCcCCCccceEECC----CCCEEEEecCCCcEEEEcCC-CC-eEEec---CCcccCceeeEEEC--CCCC-EEEeCCCC
Confidence            345567899999998    67888877644 49999976 43 22222   11133456556554  8888 77776668


Q ss_pred             CeEEEEEccCcce-eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      +.|..||.. ++. ...+......+..+++.+ ++.++++...++.|.+||. +++.......  .....+.++++++ +
T Consensus        78 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~--~~~~~~~~i~~~~-~  151 (299)
T 2z2n_A           78 NKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELP--NKGSYPSFITLGS-D  151 (299)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECS--STTCCEEEEEECT-T
T ss_pred             CeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCC--CCCCCCceEEEcC-C
Confidence            899999976 332 222223456789999998 7777777777889999998 5554332211  2456789999998 7


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEE
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL  264 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~i  264 (346)
                      +.++++...++.|..||. +...                      ...........+..+.++  +++.++...++.|.+
T Consensus       152 g~l~v~~~~~~~i~~~~~-~g~~----------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  208 (299)
T 2z2n_A          152 NALWFTENQNNAIGRITE-SGDI----------------------TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR  208 (299)
T ss_dssp             SCEEEEETTTTEEEEECT-TCCE----------------------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CCEEEEeCCCCEEEEEcC-CCcE----------------------EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence            787777777789999998 4211                      001111233456677776  666666656889999


Q ss_pred             EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee---eeEEEEEec
Q 019117          265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---CFSLHVKYN  341 (346)
Q Consensus       265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s  341 (346)
                      ||. +++.        .......+...+.++++++++  .+.++...++.|..||. +++ ...+...   ..+.++++ 
T Consensus       209 ~~~-~g~~--------~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-  274 (299)
T 2z2n_A          209 ITT-SGEI--------TEFKIPTPNARPHAITAGAGI--DLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-  274 (299)
T ss_dssp             ECT-TCCE--------EEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-
T ss_pred             ECC-CCcE--------EEEECCCCCCCceeEEECCCC--CEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-
Confidence            998 5441        111122344578899999998  56666667889999998 443 2233222   34677888 


Q ss_pred             CCCC
Q 019117          342 PQSV  345 (346)
Q Consensus       342 pdg~  345 (346)
                      ++|+
T Consensus       275 ~~g~  278 (299)
T 2z2n_A          275 DGET  278 (299)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            8775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.69  E-value=2.6e-13  Score=118.56  Aligned_cols=273  Identities=11%  Similarity=0.051  Sum_probs=172.1

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEec--cCceeeeEeeeecCCCccceEEEEEEEc----CCCCcEEEEe-ec
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACN----VDGIPFLVAG-GI  106 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~l~~~-~~  106 (346)
                      .+..+.|+|    +|+++++++.++ |.+||+.  +.+.+..+..      +...  ..+.++    |+|+ +++++ ..
T Consensus       198 ~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~------G~~P--~~ia~s~~~~pDGk-~l~v~n~~  264 (567)
T 1qks_A          198 AVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI------GSEA--RSIETSKMEGWEDK-YAIAGAYW  264 (567)
T ss_dssp             CEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC------CSEE--EEEEECCSTTCTTT-EEEEEEEE
T ss_pred             CccceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec------CCCC--ceeEEccccCCCCC-EEEEEEcc
Confidence            466899999    788888888776 9999985  6666655542      2222  344556    5998 55555 45


Q ss_pred             CCeEEEEEccCcceeeeeccC----------CC-ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117          107 NGIIRVIDVSNEKLHKSFVGH----------GD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                      ++.|.++|..+.+.+..+...          .. .+..+..++.+..++++...+|.|.++|..+.+.+.....  ....
T Consensus       265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~  342 (567)
T 1qks_A          265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAER  342 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCS
T ss_pred             CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccc
Confidence            699999999999888776521          12 5778888885566677777889999999987643322221  1345


Q ss_pred             ceEEEEecCCCCcEEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-
Q 019117          176 EVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-  251 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-  251 (346)
                      ....+.|+| +++++++ ...++.|.++|+.+.+.......                  --...|...-..+ ++  +. 
T Consensus       343 ~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~v------------------gg~~Phpg~g~~~-~~p~~g~  402 (567)
T 1qks_A          343 FLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDT------------------GGQTPHPGRGANF-VHPTFGP  402 (567)
T ss_dssp             SEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC------------------SSSSBCCTTCEEE-EETTTEE
T ss_pred             cccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEec------------------cCcCCCCccceee-ECCCCCc
Confidence            677899999 6666655 44678999999998432111000                  0001233211122 22  23 


Q ss_pred             EEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC-------CCcEEEEEcCCC
Q 019117          252 FILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-------EGKIFVWELQSS  323 (346)
Q Consensus       252 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-------dg~i~iwd~~~~  323 (346)
                      ..+++. .+++|.++|..+.+..  ....+.++.+......-..+..+|++  ++|.+...       .+.|.++|+.+.
T Consensus       403 v~~t~~~g~~~Vsvid~~~~~~~--~~~~kvv~~i~~~g~g~~~i~~~p~~--~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          403 VWATSHMGDDSVALIGTDPEGHP--DNAWKILDSFPALGGGSLFIKTHPNS--QYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTC--SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEeCCCCCCeEEEecCCCCCCc--cccCEEEEEEecCCCCCEEEEeCCCC--CeEEEecCCCCCcccCceEEEEECCcc
Confidence            334443 4689999999874311  00122455555543343557889999  55665442       469999999887


Q ss_pred             -----Ccc-eeeee---------eeeEEEEEecCCCCC
Q 019117          324 -----PPV-LIARL---------ICFSLHVKYNPQSVY  346 (346)
Q Consensus       324 -----~~~-~~~~~---------~~~~~~~~~spdg~~  346 (346)
                           ... .....         ...+.++.|+|||++
T Consensus       479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  516 (567)
T 1qks_A          479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE  516 (567)
T ss_dssp             CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred             cccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence                 211 22221         246889999999974

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=2.9e-13  Score=118.25  Aligned_cols=254  Identities=11%  Similarity=0.028  Sum_probs=169.5

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc--Ccceeeee
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSF  124 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~  124 (346)
                      .+.++++...++ |.++|..+++.+..+..      ...+..+.  ++|||+ ++++++.++.|.+||+.  +++.+..+
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~------g~~p~~v~--~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT------GYAVHISR--LSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC------SSCEEEEE--ECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeC------CCCccceE--ECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            345666666666 99999999888777752      33444455  459999 89999999999999996  77888777


Q ss_pred             ccCCCceEEEEEe----CCCCceEEEe-eCCCCEEEEecCCCeeEEEecccCC-------C-CcceEEEEecCCCCcEEE
Q 019117          125 VGHGDSINEIRTQ----PLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAGG-------H-RNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       125 ~~~~~~v~~~~~~----~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~l~  191 (346)
                      .... ....++|+    | ++++++++ ..+++|.++|..+.+.+..+.....       | ...+..+..++.+..+++
T Consensus       237 ~~G~-~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv  314 (567)
T 1qks_A          237 KIGS-EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  314 (567)
T ss_dssp             ECCS-EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             ecCC-CCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence            7543 46799999    6 66655554 5569999999999998887763210       1 226788888885566777


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCC
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPK  268 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~  268 (346)
                      ....+|.|.++|......                     ..+..+ ........+.|+  +++++++. .++.|.++|+.
T Consensus       315 ~~~~~g~v~~vd~~~~~~---------------------~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          315 NVKETGKILLVDYTDLNN---------------------LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  372 (567)
T ss_dssp             EETTTTEEEEEETTCSSE---------------------EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             EecCCCeEEEEecCCCcc---------------------ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence            777789999999876321                     111111 223345567777  77776655 58999999999


Q ss_pred             CCCCCCCCccccccccccC-----CCcCeeEEE-EeecCCcceEEEEc-CCCcEEEEEcCC-------CCcceeeeeee-
Q 019117          269 MKEQSPGEGTADILQKYPV-----PECDIWFIK-FSCDFHYNAAAIGN-REGKIFVWELQS-------SPPVLIARLIC-  333 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~-~s~~~~~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~-  333 (346)
                      +++.         +..+..     |.+.  .+. ++|++. .+.+++. .++.|.++|..+       .+.+......+ 
T Consensus       373 t~kl---------~~~i~vgg~~Phpg~--g~~~~~p~~g-~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~  440 (567)
T 1qks_A          373 EGKL---------VAIEDTGGQTPHPGR--GANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG  440 (567)
T ss_dssp             TTEE---------EEEEECSSSSBCCTT--CEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred             CCcE---------EEEEeccCcCCCCcc--ceeeECCCCC-cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence            8762         222221     2211  222 577753 4555553 568999999988       33334433332 


Q ss_pred             eEEEEEecCCCCC
Q 019117          334 FSLHVKYNPQSVY  346 (346)
Q Consensus       334 ~~~~~~~spdg~~  346 (346)
                      ....+..+|||++
T Consensus       441 g~~~i~~~p~~~~  453 (567)
T 1qks_A          441 GSLFIKTHPNSQY  453 (567)
T ss_dssp             CCCCEECCTTCSE
T ss_pred             CCEEEEeCCCCCe
Confidence            2345788999874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=3e-14  Score=115.26  Aligned_cols=219  Identities=10%  Similarity=-0.075  Sum_probs=147.3

Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      ....++|.  |+|+.+++++..++.|..|+..++  ...+..+...+.+++++| ++.++++...++.|.+||..+++..
T Consensus        29 ~~eg~~~d--~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           29 WTEGPVYV--PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             SEEEEEEE--GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             cccCCeEe--CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEE
Confidence            34456666  888647788888999999999877  566666778899999999 7888777777789999999888755


Q ss_pred             EEecccCC-CCcceEEEEecCCCCcEEEE----Eec-------------CCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117          165 LIFAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  226 (346)
Q Consensus       165 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
                      ........ ....+..++++| +++++++    ++.             .+.|..++...                    
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g--------------------  162 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG--------------------  162 (296)
T ss_dssp             EEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--------------------
T ss_pred             EEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCC--------------------
Confidence            44321111 123567899998 8888887    331             23455554431                    


Q ss_pred             ccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC-CCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117          227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  303 (346)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  303 (346)
                           ....+..+......++|+  ++.+++.+.++.|.+|++. +++..      .....+..+...+..++++++|  
T Consensus       163 -----~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G--  229 (296)
T 3e5z_A          163 -----TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGG--  229 (296)
T ss_dssp             -----CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTS--
T ss_pred             -----CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCC--
Confidence                 122233445556788887  7777777778999999987 32200      0011112244556789999999  


Q ss_pred             ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEe-cCCCC
Q 019117          304 NAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKY-NPQSV  345 (346)
Q Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-spdg~  345 (346)
                      .+.++.  ++.|.+||.. ++.+..+.....+.+++| +||++
T Consensus       230 ~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~  269 (296)
T 3e5z_A          230 LIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGR  269 (296)
T ss_dssp             CEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSC
T ss_pred             CEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCC
Confidence            555554  7889999986 555555554444788999 58875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=4.9e-14  Score=115.63  Aligned_cols=242  Identities=10%  Similarity=-0.064  Sum_probs=156.5

Q ss_pred             cEEEEEeccCceeeeEeee-ecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEe
Q 019117           59 RVTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQ  137 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  137 (346)
                      +|.++|..+++....+..- ...........+.+   .+++ ++++...++.|.+||..+++.+.++. .......++++
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~---~~~~-lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~   92 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI---RDGI-GWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL   92 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE---ETTE-EEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEE---ECCE-EEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence            4999998887765433110 01112233444554   2344 66666678999999999999988885 34678899998


Q ss_pred             CCCCceEEEeeCCCCEEEEecCCCeeEEEecccC--CCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeec
Q 019117          138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKS  214 (346)
Q Consensus       138 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~  214 (346)
                      + ++.++++...++.|.+||..+++....+....  +.......+++ . ++.++++.. .++.|.++|+.+.+.     
T Consensus        93 ~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~-----  164 (328)
T 3dsm_A           93 S-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV-----  164 (328)
T ss_dssp             E-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE-----
T ss_pred             C-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE-----
Confidence            8 66555555478999999999998887776211  01125667777 3 666666654 488999999987432     


Q ss_pred             eeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec----------CeEEEEcCCCCCCCCCCcccccc
Q 019117          215 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----------NEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                                        ...+.. ......+.++  |++++++..+          +.|.++|..+.+         ..
T Consensus       165 ------------------~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------v~  216 (328)
T 3dsm_A          165 ------------------VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------VE  216 (328)
T ss_dssp             ------------------EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---------EE
T ss_pred             ------------------EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---------EE
Confidence                              112221 1123345555  5555555544          789999998775         33


Q ss_pred             ccccCC-CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee---eeeEEEEEecCCCC
Q 019117          283 QKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL---ICFSLHVKYNPQSV  345 (346)
Q Consensus       283 ~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~spdg~  345 (346)
                      ..+... ......++|+|++  ++|.++..  .|.+||..+++.......   ...+..++++|++.
T Consensus       217 ~~~~~~~g~~p~~la~~~d~--~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g  279 (328)
T 3dsm_A          217 KQFKFKLGDWPSEVQLNGTR--DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNG  279 (328)
T ss_dssp             EEEECCTTCCCEEEEECTTS--CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTC
T ss_pred             EEEecCCCCCceeEEEecCC--CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCC
Confidence            333322 2367899999998  45665544  899999998875322111   24578899999543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=1.1e-14  Score=120.60  Aligned_cols=224  Identities=13%  Similarity=0.042  Sum_probs=140.8

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCC----c--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGN----R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~----~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ..+..++|+|    +|+.||..+.+    .  |.+|++.+++......      ... +..++|+  |+|+ .|+.++.+
T Consensus        59 ~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~~~ws--pdg~-~l~~~~~~  124 (347)
T 2gop_A           59 ENATMPRISP----DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRSLEWN--EDSR-KLLIVGFK  124 (347)
T ss_dssp             ESCEEEEECT----TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEEEEEC--TTSS-EEEEEEEC
T ss_pred             ccCCCeEECC----CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccceeEC--CCCC-EEEEEEcc
Confidence            4578899999    78888877642    2  7788877665444332      122 6556665  9998 77776532


Q ss_pred             ---------------------------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC-------CE
Q 019117          108 ---------------------------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-------SV  153 (346)
Q Consensus       108 ---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i  153 (346)
                                                 ..|.+||+.+++.+..+.. . .+..+.|+| ++ +++++..+.       ..
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~  200 (347)
T 2gop_A          125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFW  200 (347)
T ss_dssp             CCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCE
T ss_pred             CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccc
Confidence                                       5799999988876455544 3 788999999 66 777776542       34


Q ss_pred             EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC--------CeEEEEEccccceeeeeceeecCCCCCCC
Q 019117          154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFP  225 (346)
Q Consensus       154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (346)
                      .+|.+.+++. ..+.   .+ ..+..+  +| +++.|+.++.+        ..|.+||  ..+                 
T Consensus       201 ~l~~~d~~~~-~~l~---~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----------------  253 (347)
T 2gop_A          201 DIYIWEDGKE-EKMF---EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE-----------------  253 (347)
T ss_dssp             EEEEEETTEE-EEEE---EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----------------
T ss_pred             cEEEeCCCce-EEec---cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc-----------------
Confidence            5555445544 3343   23 445544  88 77767666543        3677777  311                 


Q ss_pred             CccceeceEEEeecccceEE-EEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117          226 TKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  304 (346)
                            .......+...+.. +.|+..++++++.++.++|| +.+++         . ..+..+...|.+++|+| .   
T Consensus       254 ------~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~---------~-~~~~~~~~~v~~~~~s~-~---  312 (347)
T 2gop_A          254 ------VMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGE---------I-KPIAKGRHWIMGFDVDE-I---  312 (347)
T ss_dssp             ------EEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSS---------E-EEEECSSSEEEEEEESS-S---
T ss_pred             ------eEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCc---------e-EEEecCCCeEEeeeeeC-c---
Confidence                  11111233455664 77762288888999999999 87432         2 22223466788999998 4   


Q ss_pred             eEEEEcCCCcE-EEEEcCCCC
Q 019117          305 AAAIGNREGKI-FVWELQSSP  324 (346)
Q Consensus       305 ~l~~~~~dg~i-~iwd~~~~~  324 (346)
                      ++++++.++.. .+|.+. ++
T Consensus       313 ~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          313 VVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEEEEECSSSCCEEEEES-SS
T ss_pred             EEEEEcCCCChHHheEeC-Cc
Confidence            55566555554 777766 44

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=7.3e-16  Score=130.05  Aligned_cols=211  Identities=8%  Similarity=-0.085  Sum_probs=133.7

Q ss_pred             EEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           92 ACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        92 ~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      .++|+|+ +|+.....   ..|.+||+.+++.......+......+.|+| +++.|+.++.++.|.+||+.+++......
T Consensus        42 ~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           42 CFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT  119 (396)
T ss_dssp             CBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             cCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence            3459999 76665432   4788889988876554443333333478999 88999998888899999999887655554


Q ss_pred             ccCCCCcceEE-------------------EEecCCCCcEEEEE-----ecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117          169 GAGGHRNEVLS-------------------VDFHPSDIYRIASC-----GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  224 (346)
Q Consensus       169 ~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (346)
                         .+......                   +.|+| +++.++..     ..+..|.+||+...+                
T Consensus       120 ---~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~----------------  179 (396)
T 3c5m_A          120 ---VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGE----------------  179 (396)
T ss_dssp             ---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCC----------------
T ss_pred             ---cccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCc----------------
Confidence               23332222                   24566 44444433     345678888887622                


Q ss_pred             CCccceeceEEEeecccceEEEEecC---CEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCC--CcCee
Q 019117          225 PTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIW  293 (346)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~  293 (346)
                              ...+..+...+..+.|++   +.|+..+.+      ..|.+||+...+.          ..+..+  ...+.
T Consensus       180 --------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------~~l~~~~~~~~~~  241 (396)
T 3c5m_A          180 --------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----------RKIKEHAEGESCT  241 (396)
T ss_dssp             --------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----------EESSCCCTTEEEE
T ss_pred             --------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----------eEeeccCCCcccc
Confidence                    122234566677888863   455555443      4688888865531          111111  23577


Q ss_pred             EEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCcceeeeeeeeEEEEEecC-CCCC
Q 019117          294 FIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLIARLICFSLHVKYNP-QSVY  346 (346)
Q Consensus       294 ~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~sp-dg~~  346 (346)
                      .++|+||+  ++|+..+.+     +.|++||+.+++........+. . +.|+| ||++
T Consensus       242 ~~~~spdg--~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~-~~~s~~dg~~  296 (396)
T 3c5m_A          242 HEFWIPDG--SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC-S-HLMSNFDGSL  296 (396)
T ss_dssp             EEEECTTS--SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE-E-EEEECSSSSE
T ss_pred             ceEECCCC--CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC-C-CCccCCCCce
Confidence            89999999  556665443     4599999998876554444432 2 89999 9863

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.2e-13  Score=110.19  Aligned_cols=213  Identities=8%  Similarity=-0.034  Sum_probs=149.6

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG  126 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  126 (346)
                      .+++|++++.++ |.+||..+++.+..+....    ...+..+.+.  |+|+ +++  +.++.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~--pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----GWECNSVAAT--KAGE-ILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT----TCCCCEEEEC--TTSC-EEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----cCCCcCeEEC--CCCC-EEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            368899988888 9999988999887776421    1234445554  9998 777  34678999998 8999988886


Q ss_pred             C-CCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccC---CCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          127 H-GDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       127 ~-~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                      + ...+.++.+.+ +++.+++.+. ++.|..+|. +++.+..+....   .+......+++.+ +++++++...++.|..
T Consensus        74 ~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           74 PAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE  150 (276)
T ss_dssp             CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred             CCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence            5 35788999999 8888888876 778888885 688777765311   1223455667887 8899999999999999


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  279 (346)
                      ||.. ++.                       +..+... ....++...  ++.++++..+++|..+|..+++        
T Consensus       151 ~d~~-G~~-----------------------~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~--------  197 (276)
T 3no2_A          151 IAPN-GQL-----------------------LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR--------  197 (276)
T ss_dssp             ECTT-SCE-----------------------EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC--------
T ss_pred             ECCC-CCE-----------------------EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc--------
Confidence            9987 332                       2222222 122233333  7888888888899999999887        


Q ss_pred             cccccccCC------CcCeeEEEEeecCCcceEEEE
Q 019117          280 DILQKYPVP------ECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       280 ~~~~~~~~~------~~~v~~~~~s~~~~~~~l~~~  309 (346)
                       .+.++...      -..+..+...+++  .++++.
T Consensus       198 -~~w~~~~~~~~~~~l~~~~~~~~~~~G--~i~v~~  230 (276)
T 3no2_A          198 -IVRRVNANDIEGVQLFFVAQLFPLQNG--GLYICN  230 (276)
T ss_dssp             -EEEEEEGGGSBSCCCSEEEEEEECTTS--CEEEEE
T ss_pred             -EEEEecCCCCCCccccccccceEcCCC--CEEEEe
Confidence             33333211      1236777788888  556555

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=4.1e-14  Score=112.80  Aligned_cols=211  Identities=12%  Similarity=0.051  Sum_probs=148.0

Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      .++ +|++++.++.|.+||.++++.+..+..+. ..+.++.+.| ++++++  +.++.|..||. +++.+..+..  ...
T Consensus         4 ~~~-~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~   76 (276)
T 3no2_A            4 PQH-LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA--PAG   76 (276)
T ss_dssp             CCE-EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTT
T ss_pred             CCc-EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCC
Confidence            345 89999999999999999999999998765 4789999999 888888  34678999999 8999999873  123


Q ss_pred             cceEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe--cCC
Q 019117          175 NEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGD  251 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~  251 (346)
                      ..+.++.+.| +++++++.+. ++.|..+|... +.......  ...               ...+......+.+  +|+
T Consensus        77 ~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~--~~~---------------~~~~~~~~~~v~~~~~G~  137 (276)
T 3no2_A           77 CEMQTARILP-DGNALVAWCGHPSTILEVNMKG-EVLSKTEF--ETG---------------IERPHAQFRQINKNKKGN  137 (276)
T ss_dssp             CEEEEEEECT-TSCEEEEEESTTEEEEEECTTS-CEEEEEEE--CCS---------------CSSGGGSCSCCEECTTSC
T ss_pred             ccccccEECC-CCCEEEEecCCCCEEEEEeCCC-CEEEEEec--cCC---------------CCcccccccCceECCCCC
Confidence            5788999998 8888888776 77777777532 21111100  000               0001111112222  288


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                      ++++...++.|..||.. ++         .+.++..+ ..+.++.+.+++  .++++++.++.|..+|..+++.+-.+..
T Consensus       138 ~lv~~~~~~~v~~~d~~-G~---------~~w~~~~~-~~~~~~~~~~~g--~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          138 YLVPLFATSEVREIAPN-GQ---------LLNSVKLS-GTPFSSAFLDNG--DCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             EEEEETTTTEEEEECTT-SC---------EEEEEECS-SCCCEEEECTTS--CEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             EEEEecCCCEEEEECCC-CC---------EEEEEECC-CCccceeEcCCC--CEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            99999999999999998 66         45555443 345667788888  6888888888999999998887655532


Q ss_pred             e-------eeEEEEEecCCCC
Q 019117          332 I-------CFSLHVKYNPQSV  345 (346)
Q Consensus       332 ~-------~~~~~~~~spdg~  345 (346)
                      .       ..+..+...|+|.
T Consensus       205 ~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          205 NDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             GGSBSCCCSEEEEEEECTTSC
T ss_pred             CCCCCccccccccceEcCCCC
Confidence            1       1144555555553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.67  E-value=3.8e-14  Score=116.48  Aligned_cols=286  Identities=12%  Similarity=0.005  Sum_probs=176.0

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeeeecC--CCccceEEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDE--DKEESFYTV   89 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~--~~~~~v~~~   89 (346)
                      .+.+.++.....+  .++++|    +|+.+++++           .+.|.+||..+.+.+..+..-...  ........+
T Consensus        69 ~~v~~~I~vG~~P--~va~sp----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~  142 (386)
T 3sjl_D           69 GRVIGMIDGGFLP--NPVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMT  142 (386)
T ss_dssp             TEEEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGE
T ss_pred             CeEEEEEECCCCC--cEEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceE
Confidence            4455555444444  399999    777776664           234999999998888777531100  001112224


Q ss_pred             EEEEcCCCCcEEEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEE
Q 019117           90 SWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILI  166 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~  166 (346)
                      .  ++|||+ +++++..  ++.|.++|+.+++.+.++....  . .. +.|.+...+++.+.||.+.+.++.+ ++....
T Consensus       143 a--~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~  215 (386)
T 3sjl_D          143 S--LTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YH-IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  215 (386)
T ss_dssp             E--ECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EE-EEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             E--EcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ce-eecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence            4  459999 7777653  6899999999999998886322  1 22 2343667788888899999999976 554322


Q ss_pred             ecc-cCCCCcceE-EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          167 FAG-AGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       167 ~~~-~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ... ......++. ...|.+.++++++ .+.+|.|.+.|+................         ..  ...........
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~---------~~--~~~g~~p~g~q  283 (386)
T 3sjl_D          216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE---------AE--RADGWRPGGWQ  283 (386)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH---------HH--HHTTEEECSSS
T ss_pred             ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc---------cc--ccccccCCCcc
Confidence            210 001112222 2456432666555 4457999999997632211111100000         00  00001112222


Q ss_pred             EEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          245 CNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      .+.++  ++.+.....          .+.|.+.|+.+.+         .+.++... ..++++++++|++..++++...+
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFEMG-HEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEEE-EEECEEEECSSSSCEEEEEETTT
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------EEEEEECC-CCcceEEECCCCCeEEEEEcCCC
Confidence            23333  566655532          3579999999987         55555543 36889999999952244546678


Q ss_pred             CcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          313 GKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      +.|.++|..+++.+......++.+.+.+++|
T Consensus       354 ~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          354 KTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            9999999999999999999999999999998

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=2.5e-13  Score=123.29  Aligned_cols=226  Identities=8%  Similarity=-0.069  Sum_probs=141.6

Q ss_pred             EEEEcCCCCcEEEEeecCC-----eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC------------
Q 019117           90 SWACNVDGIPFLVAGGING-----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES------------  152 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~------------  152 (346)
                      .+.++|||+ +|+.+..++     .|++||+.+++.+.....+ ..+..++|+| +++.|+.++.++.            
T Consensus       129 ~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          129 GYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccccccccccC
Confidence            344559999 777665433     8999999999876543322 2367899999 8888888877766            


Q ss_pred             ----EEEEecCCCeeE--EEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCC
Q 019117          153 ----VRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLP  221 (346)
Q Consensus       153 ----i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~  221 (346)
                          |++|++.+++..  ..+. ...+...+..+.|+| ++++|+..+.     +..|.+||+........         
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~---------  274 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAE-FPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT---------  274 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC---------
T ss_pred             CCCEEEEEECCCCcccceEEec-cCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccC---------
Confidence                999999877532  2222 113556688999999 7777776654     56899999875100000         


Q ss_pred             CCCCCccceeceEEEeecccceEEE-EecCCEEEEEeec----CeEEEEcCCCCCCCCCCccccccccccCCC--cCeeE
Q 019117          222 SKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWF  294 (346)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~  294 (346)
                             .......+..+...+... .-.|+.|+..+.+    +.|.+||+.++..       .....+..+.  ..+..
T Consensus       275 -------~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~  340 (710)
T 2xdw_A          275 -------GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEW  340 (710)
T ss_dssp             -------SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEE
T ss_pred             -------CccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEE
Confidence                   000122334444444432 2227766665543    3699999887531       0112222332  25778


Q ss_pred             EEEeecCCcceEEEEcCCCc--EEEEEcCCCCcceeeee-eeeEEEEEecCCCC
Q 019117          295 IKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIARL-ICFSLHVKYNPQSV  345 (346)
Q Consensus       295 ~~~s~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~-~~~~~~~~~spdg~  345 (346)
                      ++|++++  .++++...|+.  |++|++.+++.+..... .+.+..+.++|+++
T Consensus       341 ~~~~~~~--~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          341 VACVRSN--FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (710)
T ss_dssp             EEEETTT--EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EEEEcCC--EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence            8998666  67888888874  66678767764443333 34567788999874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=5.5e-14  Score=127.24  Aligned_cols=219  Identities=11%  Similarity=0.014  Sum_probs=136.5

Q ss_pred             ceEEEEEEEcCCCCcEEE-----EeecCCeEEEEEccCccee-eeeccCCCceEEEEEeCCCCceEEEeeCCCC------
Q 019117           85 SFYTVSWACNVDGIPFLV-----AGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDES------  152 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~-----~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~------  152 (346)
                      .+...+  ++|||+ +|+     .|+.+..|++||+.+++.+ .... .......++|+| +++.|+.++.|..      
T Consensus       122 ~~~~~~--~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          122 SLGTWA--VSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             EEEEEE--ECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             EEEEEE--ECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            444444  459999 777     4455678999999998865 2111 111126899999 8888888888776      


Q ss_pred             -------EEEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEEEecCC----eEEEEEccccceeeeeceeecC
Q 019117          153 -------VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTD  219 (346)
Q Consensus       153 -------i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~  219 (346)
                             |++|++.+++.  ...+. ...+...+..+.|+| ++++|+..+.++    .|.+|+....            
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~------------  262 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK------------  262 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS------------
T ss_pred             cCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC------------
Confidence                   99999987762  22222 114556888999999 777776666554    5555544321            


Q ss_pred             CCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEee----cCeEEEEcCCCCCCCCCCcccccccccc-CC-CcCe
Q 019117          220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYP-VP-ECDI  292 (346)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~~v  292 (346)
                                  ....+..+...+....+. ++ ++..+.    ++.|.+||+.+++..       ....+. .+ ...+
T Consensus       263 ------------~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~~~~~~l  322 (695)
T 2bkl_A          263 ------------DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARA-------SWKEIVPEDSSASL  322 (695)
T ss_dssp             ------------SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGG-------GCEEEECCCSSCEE
T ss_pred             ------------ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCcc-------CCeEEecCCCCCeE
Confidence                        123344445455555455 55 444443    588999999775410       011222 22 3457


Q ss_pred             eEEEEeecCCcceEEEEcCCCcEEEEEcC-CCCcceeeee--eeeEEEEEecCCCC
Q 019117          293 WFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARL--ICFSLHVKYNPQSV  345 (346)
Q Consensus       293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~spdg~  345 (346)
                      ..++|+ ++  .++++...|+..++|.+. +++.......  .+.+..+.++||++
T Consensus       323 ~~~~~~-~~--~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          323 LSVSIV-GG--HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD  375 (695)
T ss_dssp             EEEEEE-TT--EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred             EEEEEE-CC--EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence            778887 44  688888999988888665 3443333332  23456678888874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=1.2e-13  Score=110.18  Aligned_cols=216  Identities=10%  Similarity=-0.014  Sum_probs=140.0

Q ss_pred             eEEEEEEEcCCCCcEEE-EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           86 FYTVSWACNVDGIPFLV-AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      ...+++  +++|+ +++ +...++.|.+|+..+.........+...+.++++.+ ++.++++.. ++.|.+||...... 
T Consensus        26 p~~i~~--~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-   99 (270)
T 1rwi_B           26 PSGVAV--DSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-   99 (270)
T ss_dssp             EEEEEE--CTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-
T ss_pred             ccceEE--CCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-
Confidence            344544  48888 777 557789999999766543322223345678999999 677666655 88999999875543 


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      ..+..  .....+.+++++| ++.++++...++.|.+|+......                       ..........+.
T Consensus       100 ~~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p~  153 (270)
T 1rwi_B          100 TVLPF--DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----------------------TVLPFTGLNDPD  153 (270)
T ss_dssp             EECCC--CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-----------------------EECCCCSCCSCC
T ss_pred             eeeec--CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-----------------------EeeccccCCCce
Confidence            33321  2335789999998 778788777788999997654211                       000111122355


Q ss_pred             EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .++++  ++++++...++.|.+||......         ......+...+..+++++++  .++++...++.|.+|+..+
T Consensus       154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC--CEEEEETTTSCEEEECTTC
T ss_pred             eEEEeCCCCEEEEECCCCEEEEEecCCCce---------EeecccCCCCceEEEECCCC--CEEEEECCCCcEEEEcCCC
Confidence            66666  67666666788999999876541         11111222567899999998  6777777789999999876


Q ss_pred             CCcceeeeee--eeEEEEEecCCCC
Q 019117          323 SPPVLIARLI--CFSLHVKYNPQSV  345 (346)
Q Consensus       323 ~~~~~~~~~~--~~~~~~~~spdg~  345 (346)
                      ..... ....  ..+..++++|+|+
T Consensus       223 ~~~~~-~~~~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          223 TTSTV-LPFTGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             SCCEE-CCCCSCSCEEEEEECTTCC
T ss_pred             Cccee-eccCCCCCceeEEECCCCC
Confidence            54322 2222  3478899999986

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=7.8e-14  Score=127.14  Aligned_cols=244  Identities=9%  Similarity=-0.047  Sum_probs=150.8

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCC------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGN------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      +|...+..++|||    ||++||.+..+      .|++||+.+++.+....      ....+..++|+  || + .|+.+
T Consensus       160 ~~~~~~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~ws--pD-~-~l~~~  225 (741)
T 1yr2_A          160 DGATALDAWAASD----DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWL--GN-D-ALLYS  225 (741)
T ss_dssp             ---EEEEEEEECT----TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEES--TT-S-EEEEE
T ss_pred             CCCEEEEeEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEE--CC-C-EEEEE
Confidence            3445688999999    78888887543      29999998887654311      11112235555  88 7 77776


Q ss_pred             ecCCe--------------EEEEEccCcce--eeee--ccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCC
Q 019117          105 GINGI--------------IRVIDVSNEKL--HKSF--VGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTG  161 (346)
Q Consensus       105 ~~dg~--------------i~iwd~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~  161 (346)
                      +.++.              |.+|++.++..  ...+  ..+...+..+.|+| ++++|+..+.++     .|.+||+.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCC
Confidence            65543              88999877652  2222  33344688999999 787777666443     7999999876


Q ss_pred             --eeEEEecccCCCCcceEEEEecCCCCcEEEEEec----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          162 --ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       162 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                        +....+.   .+...+....+ | ++..|+..+.    ++.|.+||+....                     ......
T Consensus       305 ~~~~~~~l~---~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~---------------------~~~~~l  358 (741)
T 1yr2_A          305 KIGPVTALI---PDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGST---------------------PRFDTV  358 (741)
T ss_dssp             EECCCEEEE---CSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSS---------------------CEEEEE
T ss_pred             CCcccEEec---CCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCc---------------------cccEEE
Confidence              3134444   34444444433 6 5555655554    3459999987621                     001112


Q ss_pred             EeecccceEEEEec-CCEEEEEeecCeEEEEcCCC-CCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEE---E
Q 019117          236 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAI---G  309 (346)
Q Consensus       236 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~---~  309 (346)
                      +..+...+..+.+. +.++++...|+..+||.++. ++         ....+..+ .+.+..+.++|+++ .++++   .
T Consensus       359 ~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~d~~-~l~~~~ss~  428 (741)
T 1yr2_A          359 VPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK---------PAGAVSLPGIGSASGLSGRPGDR-HAYLSFSSF  428 (741)
T ss_dssp             ECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC---------EEEECBCSSSCEEEEEECCBTCS-CEEEEEEET
T ss_pred             ecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---------ceeeccCCCCeEEEEeecCCCCC-EEEEEEcCC
Confidence            23344456667777 55777888898888876542 22         23334432 46788899999884 23332   2


Q ss_pred             cCCCcEEEEEcCCCCc
Q 019117          310 NREGKIFVWELQSSPP  325 (346)
Q Consensus       310 ~~dg~i~iwd~~~~~~  325 (346)
                      ...+.|++||+.+++.
T Consensus       429 ~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          429 TQPATVLALDPATAKT  444 (741)
T ss_dssp             TEEEEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCcE
Confidence            3467899999988763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=2e-12  Score=105.40  Aligned_cols=247  Identities=10%  Similarity=0.009  Sum_probs=153.6

Q ss_pred             cCCCceEEEEEEeecCCCccEEEE-------Ec-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC-CCcEE
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFAT-------VG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFL  101 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~-------~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l  101 (346)
                      ..-....+++|++    ++.++++       .. .++|.+|+..+++... +.......+...+..+++  +++ |+ ++
T Consensus        15 ~~~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~--~~~~g~-l~   86 (314)
T 1pjx_A           15 EDIPGAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQC--DRDANQ-LF   86 (314)
T ss_dssp             CCCTTCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEE--CSSSSE-EE
T ss_pred             ccCCCccCceECC----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEE--ecCCCc-EE
Confidence            3344568899987    6788877       33 4459999977665432 221000112234555554  488 65 44


Q ss_pred             EEeecCCeEEEEEccCcceeee-ecc----CCCceEEEEEeCCCCceEEEeeCC---------------CCEEEEecCCC
Q 019117          102 VAGGINGIIRVIDVSNEKLHKS-FVG----HGDSINEIRTQPLKPSLVVSASKD---------------ESVRLWNVQTG  161 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~  161 (346)
                      ++. ..+.|.+||.. ++.... ...    ....+.++++.+ ++.++++...+               +.|..||.. +
T Consensus        87 v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (314)
T 1pjx_A           87 VAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             EEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence            444 34579999988 665433 221    124588999999 77777776554               567777765 5


Q ss_pred             eeEEEecccCCCCcceEEEEec----CCCCcE-EEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEE
Q 019117          162 ICILIFAGAGGHRNEVLSVDFH----PSDIYR-IASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                      +......    +......++++    | +++. +++...++.|.+||+.. .....                  ......
T Consensus       163 ~~~~~~~----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------~~~~~~  219 (314)
T 1pjx_A          163 QMIQVDT----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIEN------------------KKVWGH  219 (314)
T ss_dssp             CEEEEEE----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEE------------------EEEEEE
T ss_pred             CEEEecc----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCcccc------------------ceEEEE
Confidence            5443332    34456889999    9 6654 45555678999999862 11000                  001112


Q ss_pred             Eeecc-cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          236 ASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       236 ~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      +..+. .....++++  |+++++...++.|.+||..+++         .+..+..+...+.+++|+++++ .++++...+
T Consensus       220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~-~l~v~~~~~  289 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTK-TIFVTEHEN  289 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSS-EEEEEETTT
T ss_pred             CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCC-EEEEEeCCC
Confidence            22222 446677777  7777777678899999988655         3334444556789999999983 255666677


Q ss_pred             CcEEEEEcCC
Q 019117          313 GKIFVWELQS  322 (346)
Q Consensus       313 g~i~iwd~~~  322 (346)
                      +.|..|++..
T Consensus       290 ~~l~~~~~~~  299 (314)
T 1pjx_A          290 NAVWKFEWQR  299 (314)
T ss_dssp             TEEEEEECSS
T ss_pred             CeEEEEeCCC
Confidence            8999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.62  E-value=9.5e-14  Score=114.59  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=113.4

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce--------eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV--------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .+++.+++++    ...++++|+.+++++|++.....        .......   .... |+.++|    +++ +|+++ 
T Consensus        38 ~~~nlLais~----~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f----d~~-~L~v~-  103 (388)
T 1xip_A           38 ASLQNLDISN----SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF----HGD-QVLVS-  103 (388)
T ss_dssp             SCCBCEEEET----TTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE----ETT-EEEEE-
T ss_pred             ccccEEEEcC----CCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE----CCC-EEEEE-
Confidence            3689999998    67899999999999999765431        1110011   1334 877777    677 88888 


Q ss_pred             cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      .++.|++||+.+.........|...+.++.+.+ .  .+++++.||.|.+||+.+++...       +...|++++|+| 
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-  172 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-  172 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-
T ss_pred             cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-
Confidence            889999999988776666777888899888876 2  38888999999999999877643       345899999999 


Q ss_pred             CCcEEEEEecCCeEEEEEccc
Q 019117          186 DIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      .+  ++.|..||.+++|+...
T Consensus       173 kG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          173 SQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             SE--EEEEETTSCEEEEEEET
T ss_pred             Cc--eEEEEcCCcEEEEcCCC
Confidence            66  67789999999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=9e-12  Score=100.74  Aligned_cols=262  Identities=7%  Similarity=-0.049  Sum_probs=169.8

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ......+.++++.+    ++.++++...++ |.+|+.. ++. ..+.   .......+..+++.  ++|. +.++...++
T Consensus        16 ~~~~~~p~~i~~d~----~g~l~v~~~~~~~v~~~~~~-~~~-~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~~   83 (300)
T 2qc5_A           16 SIPDSGPYGITSSE----DGKVWFTQHKANKISSLDQS-GRI-KEFE---VPTPDAKVMCLIVS--SLGD-IWFTENGAN   83 (300)
T ss_dssp             SSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE-EEEE---CSSTTCCEEEEEEC--TTSC-EEEEETTTT
T ss_pred             CCCCCCcceeeECC----CCCEEEEcCCCCeEEEECCC-Cce-EEEE---CCCCCCcceeEEEC--CCCC-EEEEecCCC
Confidence            34456789999988    678888776544 9999966 443 2222   11223455556554  8887 777666678


Q ss_pred             eEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          109 IIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       109 ~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      .|..+|.. ++... .+......+..+++.+ ++.++++...++.|..+|.. ++... +.. ......+.++++.+ ++
T Consensus        84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~-~~~~~~~~~i~~d~-~g  157 (300)
T 2qc5_A           84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYE-YDL-PNKGSYPAFITLGS-DN  157 (300)
T ss_dssp             EEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEE-EEC-SSTTCCEEEEEECT-TS
T ss_pred             eEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEE-ccC-CCCCCCceeEEECC-CC
Confidence            99999987 55432 2232346789999998 77777777767899999987 55442 221 02456789999998 77


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  265 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  265 (346)
                      +++++...++.|..||... ..                      .......+...+..+.++  +++.++....+.|.+|
T Consensus       158 ~l~v~~~~~~~i~~~~~~g-~~----------------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          158 ALWFTENQNNSIGRITNTG-KL----------------------EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI  214 (300)
T ss_dssp             SEEEEETTTTEEEEECTTC-CE----------------------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             CEEEEecCCCeEEEECCCC-cE----------------------EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence            7777766678899998832 11                      011111223456777776  6666665567789999


Q ss_pred             cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee---eeEEEEEecC
Q 019117          266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---CFSLHVKYNP  342 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~sp  342 (346)
                      +. +++.        ...........+.++++++++  .+.++...++.|..||. +++. ..+...   ..+.++.++|
T Consensus       215 ~~-~g~~--------~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~  281 (300)
T 2qc5_A          215 TT-TGEI--------SEYDIPTPNARPHAITAGKNS--EIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGK  281 (300)
T ss_dssp             CT-TCCE--------EEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECT
T ss_pred             cC-CCcE--------EEEECCCCCCCceEEEECCCC--CEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCC
Confidence            98 3321        111122334568899999998  56666666789999998 4443 233232   3467788888


Q ss_pred             CCC
Q 019117          343 QSV  345 (346)
Q Consensus       343 dg~  345 (346)
                      +|+
T Consensus       282 ~g~  284 (300)
T 2qc5_A          282 DGS  284 (300)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=2.5e-12  Score=108.48  Aligned_cols=260  Identities=9%  Similarity=-0.049  Sum_probs=155.7

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC--eE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING--II  110 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i  110 (346)
                      .....|+|+|    +++++++...++ |++||..++........      ..... ++|  +++++ .|+++..++  .|
T Consensus       131 ~~P~~la~d~----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~------~~~~~-ia~--~~~g~-~l~~~d~~~~~~I  196 (409)
T 3hrp_A          131 KYMWGIAAVG----NNTVLAYQRDDPRVRLISVDDNKVTTVHPG------FKGGK-PAV--TKDKQ-RVYSIGWEGTHTV  196 (409)
T ss_dssp             CCEEEEEECS----TTEEEEEETTTTEEEEEETTTTEEEEEEET------CCBCB-CEE--CTTSS-EEEEEBSSTTCEE
T ss_pred             CCceEEEEeC----CCCEEEEecCCCcEEEEECCCCEEEEeecc------CCCCc-eeE--ecCCC-cEEEEecCCCceE
Confidence            4578899988    678888877655 99999876655443332      11222 444  48898 788777655  78


Q ss_pred             EEEEccCcceeeee----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc--cCCCCcce-E-EEEe
Q 019117          111 RVIDVSNEKLHKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG--AGGHRNEV-L-SVDF  182 (346)
Q Consensus       111 ~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v-~-~~~~  182 (346)
                      .+++...+.....+    ......+.+++++| +...|+.+..++.|..||..++... .+..  ..+....- . .++|
T Consensus       197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEE
T ss_pred             EEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEE
Confidence            89988766543333    22456678999999 4445555777889999999876533 2210  00122222 3 9999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ec
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VD  259 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d  259 (346)
                      +|.++.++++-..++.|+.|+..........    ........  . .   ......-.....++++  |+++++-. .+
T Consensus       275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g----~~~~~g~~--d-g---~~~~~~~~~P~gia~d~dG~lyvad~~~~  344 (409)
T 3hrp_A          275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCG----SATQKTVQ--D-G---LREEALFAQPNGMTVDEDGNFYIVDGFKG  344 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCCEEEEEE----CTTCCSCB--C-E---EGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred             eCCCCEEEEEeCCCCEEEEEecCCCEEEEEe----CCCCCCcC--C-C---cccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence            9955777777777889999987652110000    00000000  0 0   0000011335677887  77777777 78


Q ss_pred             CeEEEEcCCCCCCCCCCcccccc-----ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          260 NEIVLWEPKMKEQSPGEGTADIL-----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++|+.|++.+++...........     ......-.....+++++++  .++++-..++.|+.++++
T Consensus       345 ~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g--~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          345 YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG--GYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS--EEEEEESTTCEEEEEEEC
T ss_pred             CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC--CEEEEECCCCeEEEEEeC
Confidence            99999997665421100000000     0000112457889999997  688888888888887753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.59  E-value=1.6e-11  Score=102.16  Aligned_cols=278  Identities=9%  Similarity=-0.078  Sum_probs=164.4

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeee-ec-CCCccceEEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSY-VD-EDKEESFYTV   89 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~-~~-~~~~~~v~~~   89 (346)
                      .+...++.....+  .++|+|    +++.++++.           ++.|.+||..+.+.+..+..- .. ........  
T Consensus        57 ~~~~~~i~~g~~p--~i~~sp----Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~--  128 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW--  128 (373)
T ss_pred             CeEEEEecCCCCC--CeEECC----CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc--
Confidence            3344455433344  899999    788888775           234999999887776665421 00 00011122  


Q ss_pred             EEEEcCCCCcEEEEeec--CCeEEEEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117           90 SWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                      .+.++|||+ +|+++..  ++.|.++| .+++.+.. +... .   ++.+.|.+...+++.+.||.+.++|. +++.+..
T Consensus       129 ~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          129 MNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             ceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            344559999 8887764  57899999 99988877 6532 2   24555645667788888999999999 8876643


Q ss_pred             ecc---cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          167 FAG---AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       167 ~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ...   ..+.........+.+.++.+++.. ..+.+.+.|+..........+.....           ........+...
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~-----------~~~~~~~~p~g~  269 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSG-----------GRKADTWRPGGW  269 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCC-----------cccccceecCce
Confidence            320   001111122345566344444444 67889999986532111110000000           000011112223


Q ss_pred             EEEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-
Q 019117          244 DCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-  310 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-  310 (346)
                      ..+.++  ++.+.++..          ++.|.++|+.+.+         .+.++... ....+++|+||++ .+++++. 
T Consensus       270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---------vv~~i~~g-~~p~~i~~s~Dg~-~~l~v~~~  338 (373)
T 2mad_H          270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------TSSQISLG-HDVDAISVAQDGG-PDLYALSA  338 (373)
T ss_pred             EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---------EEEEEECC-CCcCeEEECCCCC-eEEEEEcC
Confidence            334444  566655432          3579999999876         55555433 2578999999994 2666666 


Q ss_pred             CCCcEEEEEcCCCCccee-eeeeeeEEEE
Q 019117          311 REGKIFVWELQSSPPVLI-ARLICFSLHV  338 (346)
Q Consensus       311 ~dg~i~iwd~~~~~~~~~-~~~~~~~~~~  338 (346)
                      .++.|.+||+.+++.+.. ......+..+
T Consensus       339 ~~~~V~ViD~~t~~vv~~i~~vG~~P~~~  367 (373)
T 2mad_H          339 GTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             CCCeEEEEECCCCCEEeeecCCCCCCcEE
Confidence            589999999999987765 3444444433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=2e-12  Score=117.87  Aligned_cols=219  Identities=14%  Similarity=0.018  Sum_probs=134.4

Q ss_pred             EEEEcCCCCcEEEEeecC-----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC------------
Q 019117           90 SWACNVDGIPFLVAGGIN-----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES------------  152 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~------------  152 (346)
                      .+.++|||+ +|+.+..+     ..|++||+.+++.+.... +...+..++|+| + +.|+.++.++.            
T Consensus       167 ~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          167 AWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC--------CCCC
T ss_pred             eEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccccCCCC
Confidence            344559999 77766543     469999999998754321 222346789999 6 77777766554            


Q ss_pred             --EEEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCC
Q 019117          153 --VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSK  223 (346)
Q Consensus       153 --i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (346)
                        |++|++.+++.  ...+.. ..+...+..+.|+| ++++|+..+.++     .|.+||+.....              
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~--------------  306 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKI--------------  306 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEE--------------
T ss_pred             CEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCC--------------
Confidence              88999877652  222221 13344688999999 887777666543     899999876310              


Q ss_pred             CCCccceeceEEEeecccceEEEEec-CCEEEEEee----cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117          224 FPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  298 (346)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  298 (346)
                             .....+..+...+....+. ++.|+..+.    ++.|.+||+.+.. .    .  ....+..+...+..++++
T Consensus       307 -------~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~----~--~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          307 -------GPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-P----R--FDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             -------CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-C----E--EEEEECCCSSEEEEEEEE
T ss_pred             -------cccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-c----c--cEEEecCCCCeEEEEEEE
Confidence                   0022333333333333223 777777765    3459999987641 0    0  112223334456667776


Q ss_pred             ecCCcceEEEEcCCCcEEEEEcC-CCCcceeeee--eeeEEEEEecCCCC
Q 019117          299 CDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARL--ICFSLHVKYNPQSV  345 (346)
Q Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~spdg~  345 (346)
                       ++  .++++...|+..+||.+. +++.......  .+.+..+.++||++
T Consensus       373 -~~--~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          373 -GN--RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             -BT--EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred             -CC--EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence             33  578888889987777654 3443333333  34577899999885

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=1.9e-11  Score=98.80  Aligned_cols=232  Identities=9%  Similarity=0.037  Sum_probs=144.3

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ..+..-.-+..|+|.   ++.++++...++ |..||..++.. ..+.      ....+..+++.  ++|+ ++++.  ++
T Consensus         9 ~~~~~~~Egp~w~~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~------~~~~~~~i~~~--~dG~-l~v~~--~~   73 (297)
T 3g4e_A            9 PENCRCGESPVWEEV---SNSLLFVDIPAKKVCRWDSFTKQV-QRVT------MDAPVSSVALR--QSGG-YVATI--GT   73 (297)
T ss_dssp             CCCCSBEEEEEEETT---TTEEEEEETTTTEEEEEETTTCCE-EEEE------CSSCEEEEEEB--TTSS-EEEEE--TT
T ss_pred             ccCCccccCCeEECC---CCEEEEEECCCCEEEEEECCCCcE-EEEe------CCCceEEEEEC--CCCC-EEEEE--CC
Confidence            344445668889882   356777766555 99999876554 2222      23456666654  9998 55553  56


Q ss_pred             eEEEEEccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeCC---------CCEEEEecCC-CeeEEEecccCCCC
Q 019117          109 IIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKD---------ESVRLWNVQT-GICILIFAGAGGHR  174 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~-~~~~~~~~~~~~~~  174 (346)
                      .|.+||..+++.......    ....++.+++.| ++.++++....         ..-.+|.+.. ++......    ..
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----~~  148 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----QV  148 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----EE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----cc
Confidence            899999988765432221    124578999999 77766654321         2345555543 33333222    44


Q ss_pred             cceEEEEecCCCCc-EEEEEecCCeEEEEEcc--ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117          175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  249 (346)
Q Consensus       175 ~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  249 (346)
                      ...+.++|+| +++ ++++.+.++.|.+||+.  +.....                  ......+..+......++++  
T Consensus       149 ~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~------------------~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          149 DISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISN------------------RRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             SBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEE------------------EEEEEECCGGGCEEEEEEEBTT
T ss_pred             ccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccC------------------cEEEEECCCCCCCCCeeEECCC
Confidence            5678999999 665 45666668899999974  211000                  01122222234456778887  


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEc
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGN  310 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~  310 (346)
                      |++.++....+.|..||..+++         .+..+..+...+++++|. |+++ .++++..
T Consensus       210 G~lwva~~~~~~v~~~d~~tG~---------~~~~i~~p~~~~t~~~f~g~d~~-~L~vt~~  261 (297)
T 3g4e_A          210 GKLWVACYNGGRVIRLDPVTGK---------RLQTVKLPVDKTTSCCFGGKNYS-EMYVTCA  261 (297)
T ss_dssp             SCEEEEEETTTEEEEECTTTCC---------EEEEEECSSSBEEEEEEESGGGC-EEEEEEB
T ss_pred             CCEEEEEcCCCEEEEEcCCCce---------EEEEEECCCCCceEEEEeCCCCC-EEEEEcC
Confidence            7666666667889999998776         566666666789999999 8874 3334433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=3.9e-11  Score=96.89  Aligned_cols=239  Identities=10%  Similarity=-0.058  Sum_probs=153.6

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      +...+.++++.+    ++.++++...++ |..|+.. +. ...+.   .......+..+++.  ++|. ++++...++.|
T Consensus        55 ~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~~~~-g~-~~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~~~i  122 (299)
T 2z2n_A           55 PDAKVMCLTISS----DGEVWFTENAANKIGRITKK-GI-IKEYT---LPNPDSAPYGITEG--PNGD-IWFTEMNGNRI  122 (299)
T ss_dssp             TTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SC-EEEEE---CSSTTCCEEEEEEC--TTSC-EEEEETTTTEE
T ss_pred             ccCceeeEEECC----CCCEEEeCCCCCeEEEECCC-Cc-EEEEe---CCCcCCCceeeEEC--CCCC-EEEEecCCceE
Confidence            456788999987    678888877555 9999864 33 22222   11133455555554  8887 77777678899


Q ss_pred             EEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          111 RVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       111 ~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      .+||. +++... ....+...+..+++.+ ++.++++...++.|..||. +++.......  .....+.++++++ ++.+
T Consensus       123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~--~~~~~~~~i~~~~-~g~l  196 (299)
T 2z2n_A          123 GRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIP--TPASGPVGITKGN-DDAL  196 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECS--STTCCEEEEEECT-TSSE
T ss_pred             EEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCC--CCCCcceeEEECC-CCCE
Confidence            99998 554432 2233456789999998 7777777767789999998 6655432111  2445788999998 7787


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~  267 (346)
                      +++...++.|.+||. +...                      .......+...+.++.++  |++.++...++.|..||.
T Consensus       197 ~v~~~~~~~i~~~~~-~g~~----------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          197 WFVEIIGNKIGRITT-SGEI----------------------TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCE----------------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             EEEccCCceEEEECC-CCcE----------------------EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            777666889999998 4211                      011122234567788887  565555556789999998


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      . ++.        .......+...+.++++ +++  .+.++.+ .+.|..++..+++
T Consensus       254 ~-g~~--------~~~~~~~~~~~~~~i~~-~~g--~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          254 N-NII--------EEYPIQIKSAEPHGICF-DGE--TIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             T-TEE--------EEEECSSSSCCEEEEEE-CSS--CEEEEET-TTEEEEEEEC---
T ss_pred             C-Cce--------EEEeCCCCCCccceEEe-cCC--CEEEEec-CCcEEEEEcCccc
Confidence            3 321        11112233457889999 777  4555544 5678788877653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.55  E-value=1.8e-11  Score=101.76  Aligned_cols=240  Identities=7%  Similarity=-0.134  Sum_probs=150.4

Q ss_pred             cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccC-
Q 019117           59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH-  127 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-  127 (346)
                      .|.++|..+++.+..+..      +.. ..+.+  +|||+ +++++.          .++.|.+||..+.+.+..+... 
T Consensus        48 ~v~v~D~~t~~~~~~i~~------g~~-p~i~~--spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~  117 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNG------GFL-PNPVA--AHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             EEEEEECCCCeEEEEecC------CCC-CCeEE--CCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC
Confidence            579999988877655542      111 13444  59999 777765          3678999999998887766432 


Q ss_pred             ------CCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEE-ecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117          128 ------GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       128 ------~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  198 (346)
                            ......+.|+| ++++|+++..  ++.|.++| .+++.+.. +.    ....   +.+.|.+...+++.+.||.
T Consensus       118 ~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~---~~~~~~~~~~~~~~~~dg~  188 (373)
T 2mad_H          118 APRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTC---YHIHPGAPSTFYLLCAQGG  188 (373)
T ss_pred             ccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCce---EEEEeCCCceEEEEcCCCC
Confidence                  12346899999 7888887764  57899999 99988877 65    2222   4445545566777888999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce-EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG  275 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~  275 (346)
                      +.++|. ..+.......               .+..   .....+ ....+.  +..++..+.++.+.+.|+......  
T Consensus       189 ~~~vd~-~g~~~~~~~~---------------~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~--  247 (373)
T 2mad_H          189 LAKTDH-AGGAAGAGLV---------------GAML---TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT--  247 (373)
T ss_pred             EEEEEC-CCcEEEEEec---------------cccc---cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce--
Confidence            999999 6332100000               0000   001111 111121  333333346778999998754311  


Q ss_pred             Ccccccccccc----------CCCcCeeEEEEeecCCcceEEEEc----------CCCcEEEEEcCCCCcceeeeeeeeE
Q 019117          276 EGTADILQKYP----------VPECDIWFIKFSCDFHYNAAAIGN----------REGKIFVWELQSSPPVLIARLICFS  335 (346)
Q Consensus       276 ~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  335 (346)
                           .+..+.          ........+.++|++.  .+.+..          ..+.|.++|+.+++.+..+...+.+
T Consensus       248 -----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~--~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p  320 (373)
T 2mad_H          248 -----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSD--GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             -----EeeeeeecCCcccccceecCceEeEEECCCCC--EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCc
Confidence                 111111          0112344578999984  444432          2357999999999888888777778


Q ss_pred             EEEEecCCCC
Q 019117          336 LHVKYNPQSV  345 (346)
Q Consensus       336 ~~~~~spdg~  345 (346)
                      ..++|+|||+
T Consensus       321 ~~i~~s~Dg~  330 (373)
T 2mad_H          321 DAISVAQDGG  330 (373)
T ss_pred             CeEEECCCCC
Confidence            9999999997

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=1.8e-13  Score=112.98  Aligned_cols=166  Identities=11%  Similarity=0.016  Sum_probs=122.6

Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-----------eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  198 (346)
                      .++.+++++ ...++++|+.++ +.+|++.+.+           .....    .+.. |+.++|   ++.+|+++ .++.
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~----~lp~-V~~l~f---d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK----EIPD-VIFVCF---HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE----ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe----eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence            689999999 888999999875 6679875433           11222    2556 999999   56777777 8899


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      |++||+++..                       .......|...+.++.+....+++++.||.|.+||+.++.       
T Consensus       108 l~v~dv~sl~-----------------------~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~-------  157 (388)
T 1xip_A          108 LYSLDLEELS-----------------------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS-------  157 (388)
T ss_dssp             EEEEESSSTT-----------------------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-------
T ss_pred             EEEEEchhhh-----------------------ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc-------
Confidence            9999998833                       2223445666777777775458999999999999999765       


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc--ceee------e----eeeeEEEEEecCCCCC
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIA------R----LICFSLHVKYNPQSVY  346 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------~----~~~~~~~~~~spdg~~  346 (346)
                        ...    +...|++++|||+|    ++.|..||.+++|+...++.  ...+      .    ...++.++.|.++++|
T Consensus       158 --~~~----~~~~Vs~v~WSpkG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f  227 (388)
T 1xip_A          158 --TKQ----LAQNVTSFDVTNSQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF  227 (388)
T ss_dssp             --EEE----EEESEEEEEECSSE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred             --ccc----ccCCceEEEEcCCc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence              111    34589999999998    67788999999998877663  2222      1    2456899999998754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=5.7e-12  Score=103.62  Aligned_cols=252  Identities=7%  Similarity=-0.047  Sum_probs=161.6

Q ss_pred             CccEEEEEcC-----C-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEE
Q 019117           48 YFNVFATVGG-----N-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIR  111 (346)
Q Consensus        48 ~~~~la~~~~-----~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~  111 (346)
                      ++..+.+...     + .|.++|..+++.+..+..-     ..+ . +.  ++|||+ +++++.          .++.|.
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-----~~P-~-va--~spDG~-~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLP-N-PV--VADDGS-FIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSC-E-EE--ECTTSS-CEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-----CCC-c-EE--ECCCCC-EEEEEcccccccccCCCCCEEE
Confidence            5555555543     3 4999999998888877641     122 2 44  459999 666554          367899


Q ss_pred             EEEccCcceeeeeccCC-------CceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          112 VIDVSNEKLHKSFVGHG-------DSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      +||..+.+.+..+.-..       .....++|+| ++++++++..  ++.|.++|+.+++.+..+..    .+.  ...+
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g~--~~~~  185 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PDC--YHIF  185 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSE--EEEE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CCc--ceee
Confidence            99999999888775321       2456799999 7787777653  68999999999999998862    221  2223


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEee
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSV  258 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~~  258 (346)
                       |.+...+++.+.||++.+.++.. .+......       ..+.            .....+. ...|.  ...++-.+.
T Consensus       186 -P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-------~~~~------------~~~~~~~~~~~~~~~dG~~~~vs~  245 (386)
T 3sjl_D          186 -PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-------EVFH------------PEDEFLINHPAYSQKAGRLVWPTY  245 (386)
T ss_dssp             -EEETTEEEEEETTSCEEEEECCSSSCCEEEEC-------CCCS------------CTTSCBCSCCEEETTTTEEEEEBT
T ss_pred             -cCCCceeEEECCCCCEEEEECCCCCeEEEeec-------ceec------------cccccccccceeEcCCCcEEEEeC
Confidence             43566777888899999998876 22110000       0000            0000010 11332  233334566


Q ss_pred             cCeEEEEcCCCCCCCCCCcccccccccc----------CCCcCeeEEEEeecCCcceEEEEc----------CCCcEEEE
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYP----------VPECDIWFIKFSCDFHYNAAAIGN----------REGKIFVW  318 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~~~l~~~~----------~dg~i~iw  318 (346)
                      +|.|.+.|+.+....       .+..+.          ...+....++++++++  .+....          ..+.|.+.
T Consensus       246 ~g~V~v~d~~~~~~~-------v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~--~lyV~~~~~~~~~hk~~~~~V~vi  316 (386)
T 3sjl_D          246 TGKIHQIDLSSGDAK-------FLPAVEALTEAERADGWRPGGWQQVAYHRALD--RIYLLVDQRDEWRHKTASRFVVVL  316 (386)
T ss_dssp             TSEEEEEECTTSSCE-------ECCCEESSCHHHHHTTEEECSSSCEEEETTTT--EEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCEEEEEECCCCcce-------eecceeccccccccccccCCCcceeeECCCCC--eEEEEeccccccccCCCCCEEEEE
Confidence            899999999765421       111111          1122344577888885  333332          13579999


Q ss_pred             EcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          319 ELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       319 d~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      |+.+++.+..+.+...+..++++|||+
T Consensus       317 D~~t~kv~~~i~vg~~~~~lavs~D~~  343 (386)
T 3sjl_D          317 DAKTGERLAKFEMGHEIDSINVSQDEK  343 (386)
T ss_dssp             ETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred             ECCCCeEEEEEECCCCcceEEECCCCC
Confidence            999999988888888899999999996

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.49  E-value=1.8e-11  Score=102.51  Aligned_cols=285  Identities=11%  Similarity=-0.017  Sum_probs=166.9

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeeeecCC--CccceEE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDED--KEESFYT   88 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~   88 (346)
                      ..+.+.++..-..+  .++++|    +++.|+++.           .+.|.++|..+++.+..+..-....  ...... 
T Consensus       108 t~~vv~~I~vG~~P--gia~Sp----Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-  180 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAAE----DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-  180 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-
T ss_pred             CCEEEEEEECCCCC--ceEECC----CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-
Confidence            34445555444445  799999    677666664           2339999999988877765310000  001111 


Q ss_pred             EEEEEcCCCCcEEEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117           89 VSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                       .+.++|||+ +++++..  ++.|.+.|+.+++.+..+.....    ....|.+...+++.+.||.+.+.+..+++....
T Consensus       181 -~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          181 -MNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             -GSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             -eEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence             234559999 7777763  58999999999998888764221    334443456777778889988888866655432


Q ss_pred             ec-ccCCCCcce-EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117          167 FA-GAGGHRNEV-LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  244 (346)
Q Consensus       167 ~~-~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (346)
                      .. .......++ ..+.+.+ ++..++..+..+.|.+.|+.................        ......   ......
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~--------~i~~g~---~p~g~~  322 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA--------ERADDW---RPGGWQ  322 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT--------TGGGTE---EECSSS
T ss_pred             eeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc--------cccccc---ccCCce
Confidence            10 000111121 2356787 555555556678999999865322111110000000        000000   111111


Q ss_pred             EEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-C
Q 019117          245 CNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R  311 (346)
Q Consensus       245 ~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~  311 (346)
                      .+.++  ++.+++...          ++.|.++|+.+.+         .+.++.... ....+.|+||++. ++++.. .
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~vg~-~P~gia~spDg~~-~lyv~n~~  391 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIELGH-EIDSINVSQDAEP-LLYALSAG  391 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEEEE-EECEEEECCSSSC-EEEEEETT
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEECCC-CcCeEEEccCCCE-EEEEEcCC
Confidence            12343  565555532          4579999999887         566665433 5789999999942 555555 6


Q ss_pred             CCcEEEEEcCCCCcceee-eeeeeEEEEEecCC
Q 019117          312 EGKIFVWELQSSPPVLIA-RLICFSLHVKYNPQ  343 (346)
Q Consensus       312 dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~spd  343 (346)
                      ++.|.++|+.+++.+..+ ..... ..+..+||
T Consensus       392 s~~VsVID~~t~kvv~tI~~vG~~-P~~i~~~~  423 (426)
T 3c75_H          392 TQTLHIYDAATGEELRSVDQLGRG-PQIITTHD  423 (426)
T ss_dssp             TTEEEEEETTTCCEEEEECCCSSS-CCEEECCC
T ss_pred             CCeEEEEECCCCCEEEEecCCCCC-CcEEEcCC
Confidence            999999999999877665 33333 33666665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=9.5e-11  Score=94.66  Aligned_cols=221  Identities=7%  Similarity=-0.001  Sum_probs=142.6

Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      ...|.  +++..++++...++.|..||..+++. ..+. ....+.++++++ +++++++ . ++.|.+||..+++.....
T Consensus        17 gp~w~--~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           17 SPVWE--EVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEEEE--TTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             CCeEE--CCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            45665  75443777777889999999987764 2332 456799999999 7775554 4 567999999887654433


Q ss_pred             cccC-CCCcceEEEEecCCCCcEEEEEecC---------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          168 AGAG-GHRNEVLSVDFHPSDIYRIASCGMD---------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       168 ~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      .... .....++.++++| +++++++....         ..-.+|.+....                       ......
T Consensus        90 ~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------------------~~~~~~  145 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDH-----------------------HVKKYF  145 (297)
T ss_dssp             ECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-----------------------CEEEEE
T ss_pred             ecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCC-----------------------CEEEEe
Confidence            2111 1234688999999 77766654322         234555544310                       111122


Q ss_pred             ecccceEEEEec--CCEE-EEEeecCeEEEEcCC--CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117          238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  312 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  312 (346)
                      .+......++|+  ++.| ++.+.++.|.+|++.  ++..    ........+......+..+++.+++  .+.++...+
T Consensus       146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~----~~~~~~~~~~~~~~~p~g~~~d~~G--~lwva~~~~  219 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI----SNRRSVYKLEKEEQIPDGMCIDAEG--KLWVACYNG  219 (297)
T ss_dssp             EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE----EEEEEEEECCGGGCEEEEEEEBTTS--CEEEEEETT
T ss_pred             eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc----cCcEEEEECCCCCCCCCeeEECCCC--CEEEEEcCC
Confidence            233445678887  6655 555668899999874  3321    0011222333334567889999998  567776677


Q ss_pred             CcEEEEEcCCCCcceeeeee-eeEEEEEec-CCCC
Q 019117          313 GKIFVWELQSSPPVLIARLI-CFSLHVKYN-PQSV  345 (346)
Q Consensus       313 g~i~iwd~~~~~~~~~~~~~-~~~~~~~~s-pdg~  345 (346)
                      +.|..||..+++.+..+..+ ..+++++|. ||++
T Consensus       220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGC
T ss_pred             CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCC
Confidence            88999999989877777766 468999998 8765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=6.7e-12  Score=103.60  Aligned_cols=268  Identities=11%  Similarity=0.022  Sum_probs=158.3

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC--Cc-EEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCCC
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~--~~-v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~   97 (346)
                      ++.+..+.   ..+..|+++|    +|+++++...  ++ +.||.+.++ .+..+....  ...+-..+..+++.  ++|
T Consensus         9 ~~~v~~~~---~~p~~va~~~----~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d--~~g   78 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTP----DGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSD--GNG   78 (343)
T ss_dssp             CEEEEEES---SCEEEEEECT----TSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEEC--SSS
T ss_pred             eEEEEEcC---CCcceEEECC----CCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEc--CCC
Confidence            44444443   6789999998    7889988642  22 566666533 232222111  11123455555554  888


Q ss_pred             CcEEEEeec-----CCeEEEEEccCcceeeeecc------CCCceEEEEEeCCCCceEEEee---CCCCEEEEecCCCee
Q 019117           98 IPFLVAGGI-----NGIIRVIDVSNEKLHKSFVG------HGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGIC  163 (346)
Q Consensus        98 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~  163 (346)
                      + ++++-..     ++.|.+||+.+++.+..+..      +...+..+++++.++..+++..   .++.|.+||+.+++.
T Consensus        79 ~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           79 I-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             E-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             c-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            7 5555433     57899999999887666542      2245689999983455556655   678999999998887


Q ss_pred             EEEecccCCCCcceE-EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          164 ILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      ...+.   +|..... ...+.+ ++..+.+.+.++.++.|..                                     .
T Consensus       158 ~r~~~---~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~-------------------------------------~  196 (343)
T 2qe8_A          158 ARVLQ---GYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPHL-------------------------------------G  196 (343)
T ss_dssp             EEECT---TCTTTSCCSCCCEE-TTEECBEECTTSCEECCCC-------------------------------------C
T ss_pred             EEEec---CCCcccccccceeE-CCEEEEeccCCCceeceec-------------------------------------c
Confidence            66664   3322110 133444 5566666667777655421                                     2


Q ss_pred             eEEEEec--CCEEEEEeecC-eEEEEcCCCCCCCCCCccccccccc--cCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          243 VDCNRWL--GDFILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      +..++++  ++.|+.+..++ .+..++........ .........+  .++.+....+++++++  .++++...++.|.+
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~pdgia~d~~G--~l~va~~~~~~V~~  273 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPICDGISIDKDH--NIYVGDLAHSAIGV  273 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSCSCEEECTTC--CEEEEEGGGTEEEE
T ss_pred             cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCCceEEECCCC--CEEEEccCCCeEEE
Confidence            3456666  66777776655 44444432111000 0000011111  1223356678999998  78888888999999


Q ss_pred             EEcCCCCcceeeeee--eeEEEEEecCCCC
Q 019117          318 WELQSSPPVLIARLI--CFSLHVKYNPQSV  345 (346)
Q Consensus       318 wd~~~~~~~~~~~~~--~~~~~~~~spdg~  345 (346)
                      ||.++++........  ..+..++|.|+|+
T Consensus       274 ~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          274 ITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             EETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             EECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            998666543333322  2478899999886

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.1e-11  Score=103.72  Aligned_cols=248  Identities=7%  Similarity=-0.048  Sum_probs=154.2

Q ss_pred             cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccC-
Q 019117           59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH-  127 (346)
Q Consensus        59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-  127 (346)
                      .|.++|..+.+.+..+..-     ..+  .+.+  +|||+ +|+++.          .++.|.++|..+.+.+..+.-. 
T Consensus       100 ~VsVID~~t~~vv~~I~vG-----~~P--gia~--SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g  169 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGG-----FLP--HPVA--AEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD  169 (426)
T ss_dssp             EEEEEETTTTEEEEEEEEC-----SSC--EEEE--CTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECCCCEEEEEEECC-----CCC--ceEE--CCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence            4999999999988887742     122  3554  59999 666654          4678999999999988877532 


Q ss_pred             ------CCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117          128 ------GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  199 (346)
Q Consensus       128 ------~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  199 (346)
                            ......+.|+| ++++++++..  ++.|.+.|+.+++.+..+..    .+.   ....|.+...+++.+.||.+
T Consensus       170 ~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g~---~~~~p~g~~~~v~~~~dG~~  241 (426)
T 3c75_H          170 APRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV----PDC---YHIFPASPTVFYMNCRDGSL  241 (426)
T ss_dssp             CCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSE---EEEEEEETTEEEEEETTSSE
T ss_pred             ccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc----CCc---eeeccCCCcEEEEEcCCCCE
Confidence                  23456889999 7888887764  57899999999999988873    221   22334344666777778888


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce-EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                      .+.++...+......       ..            +......+ ..+.+.  ++.++..+..+.|.+.|..........
T Consensus       242 ~~V~~~~~~v~~~~~-------~~------------~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~  302 (426)
T 3c75_H          242 ARVDFADGETKVTNT-------EV------------FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA  302 (426)
T ss_dssp             EEEECCTTCCEEEEC-------CC------------CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC
T ss_pred             EEEECCCCcEEEEee-------ee------------eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee
Confidence            888874322110000       00            00000000 011222  555556667788999998654311000


Q ss_pred             cccccc----ccccCCCcCeeEEEEeecCCcceEEEEc---------CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          277 GTADIL----QKYPVPECDIWFIKFSCDFHYNAAAIGN---------REGKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       277 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      . ....    ............++++++++ +++++..         .++.|.++|+.+.+.+..+.....+..+.|+||
T Consensus       303 ~-~~~~~~~~i~~g~~p~g~~~va~s~dg~-rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spD  380 (426)
T 3c75_H          303 P-IEALTEAERADDWRPGGWQQTAYHRQSD-RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQD  380 (426)
T ss_dssp             C-EESSCTTTGGGTEEECSSSCEEEEGGGT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS
T ss_pred             e-eeeccccccccccccCCceeeEEcCCCC-EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccC
Confidence            0 0000    00000111223468999985 2333322         245799999999998888888888999999999


Q ss_pred             CC
Q 019117          344 SV  345 (346)
Q Consensus       344 g~  345 (346)
                      |+
T Consensus       381 g~  382 (426)
T 3c75_H          381 AE  382 (426)
T ss_dssp             SS
T ss_pred             CC
Confidence            97

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=3.8e-11  Score=97.79  Aligned_cols=222  Identities=12%  Similarity=0.066  Sum_probs=139.9

Q ss_pred             eEEEEEEEcCCCCcEEEE-------eecCCeEEEEEccCcceeeeec----cCCCceEEEEEeCCC-CceEEEeeCCCCE
Q 019117           86 FYTVSWACNVDGIPFLVA-------GGINGIIRVIDVSNEKLHKSFV----GHGDSINEIRTQPLK-PSLVVSASKDESV  153 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~s~~~d~~i  153 (346)
                      ...++|.  ++|. ++++       +..++.|.+||..+++......    ++...+..+++++ + +.++++.. .+.|
T Consensus        20 ~~~~~~~--~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           20 AEGPVFD--KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGL   94 (314)
T ss_dssp             CEEEEEC--TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEE
T ss_pred             ccCceEC--CCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCE
Confidence            3446665  8887 7777       6778999999988777543221    2446789999999 6 65555544 4479


Q ss_pred             EEEecCCCeeEEE-ecccC-CCCcceEEEEecCCCCcEEEEEecC---------------CeEEEEEccccceeeeecee
Q 019117          154 RLWNVQTGICILI-FAGAG-GHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKSFT  216 (346)
Q Consensus       154 ~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~  216 (346)
                      .+||.. ++.... ..... .....+.++++++ ++.++++...+               +.|..||... .        
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~--------  163 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q--------  163 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C--------
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC-C--------
Confidence            999988 665433 22111 1234588999998 77877776554               4566665432 1        


Q ss_pred             ecCCCCCCCCccceeceEEEeecccceEEEEec------CCEEEEE-eecCeEEEEcCC-CCCCCCCCccccccccccCC
Q 019117          217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSK-SVDNEIVLWEPK-MKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~-~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~  288 (346)
                                      ......+......+.++      ++.++.+ ..++.|.+||+. +++..    .......+..+
T Consensus       164 ----------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~  223 (314)
T 1pjx_A          164 ----------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGT  223 (314)
T ss_dssp             ----------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCC
T ss_pred             ----------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCC
Confidence                            11111222334556665      3345444 567899999976 22200    00122223333


Q ss_pred             C-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEEEEecCCCC
Q 019117          289 E-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQSV  345 (346)
Q Consensus       289 ~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg~  345 (346)
                      . ..+..+++++++  .++++...++.|.+||..+++........ ..+.+++|+|||+
T Consensus       224 ~~~~p~~i~~d~~G--~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          224 HEGGADGMDFDEDN--NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             SSCEEEEEEEBTTC--CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             CCCCCCceEECCCC--CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence            3 457889999998  67777767889999999877765555544 4578899999986

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=5.1e-11  Score=107.72  Aligned_cols=245  Identities=9%  Similarity=0.021  Sum_probs=146.9

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEc----CC-c-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVG----GN-R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~----~~-~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      .+|...+..++|||    +|++||.+.    .+ . |++||+.+++.+.....      ......++|  + ||+ .|+.
T Consensus       125 ~~~~~~l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------~~k~~~~~W--s-Dg~-~l~y  190 (693)
T 3iuj_A          125 PDGTTALDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------DVKFSGISW--L-GNE-GFFY  190 (693)
T ss_dssp             TTSCCEEEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------EEESCCCEE--E-TTT-EEEE
T ss_pred             CCCcEEEEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------CceeccEEE--e-CCC-EEEE
Confidence            34666788999999    788888532    22 3 99999998876443110      101122445  4 677 6776


Q ss_pred             eecCC-------------eEEEEEccCcce----eeeecc-CCCceEEEEEeCCCCceEE-EeeC---CCCEEEEecCCC
Q 019117          104 GGING-------------IIRVIDVSNEKL----HKSFVG-HGDSINEIRTQPLKPSLVV-SASK---DESVRLWNVQTG  161 (346)
Q Consensus       104 ~~~dg-------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~-s~~~---d~~i~iwd~~~~  161 (346)
                      ++.+.             .|.+|++.++..    +..... |...+..+.|+| ++++|+ +.+.   +..|.++|+.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCC
Confidence            66653             499999877642    223333 445678899999 666654 3332   358999999776


Q ss_pred             e-eEEEecccCCCCcceEEEEecCCCCcEEEEEecC---CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          162 I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       162 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      . ....+.   .+....... ++++++.+++....+   +.|..+|+.....                     .....+.
T Consensus       270 ~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------------------~~~~~l~  324 (693)
T 3iuj_A          270 NAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---------------------AHWRDLI  324 (693)
T ss_dssp             TCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------GGCEEEE
T ss_pred             CCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------cccEEEe
Confidence            3 344444   355555554 444366666666554   5788899876321                     0122334


Q ss_pred             ecccceEEEEecCCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCC-
Q 019117          238 VHSNYVDCNRWLGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNRE-  312 (346)
Q Consensus       238 ~~~~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~d-  312 (346)
                      .|...+..+...++.|+....++   .|++|++....          ...+.. ..+.+..+.+++++.  .|+....+ 
T Consensus       325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~--~l~~~~ss~  392 (693)
T 3iuj_A          325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDP--ALYFGFENY  392 (693)
T ss_dssp             CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE----------EEEECCSSSSEEEECCCCTTCS--CEEEEEECS
T ss_pred             cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe----------eEEeecCCCceEEeeecCCCCC--EEEEEecCC
Confidence            44444434444477777666544   68999987543          222222 234566777788874  33333322 


Q ss_pred             ---CcEEEEEcCCCCcc
Q 019117          313 ---GKIFVWELQSSPPV  326 (346)
Q Consensus       313 ---g~i~iwd~~~~~~~  326 (346)
                         +.|+.||+.+++..
T Consensus       393 ~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          393 AQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             SSCCEEEEECTTTCCEE
T ss_pred             CCCCEEEEEECCCCeEE
Confidence               78999999887643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=6.1e-10  Score=89.91  Aligned_cols=236  Identities=10%  Similarity=-0.003  Sum_probs=150.3

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      +...+.++++.+    ++.++++...++ |..||.. ++. ..+.   .......+..+++.  ++|. ++++...++.|
T Consensus        60 ~~~~~~~i~~~~----~g~l~v~~~~~~~v~~~d~~-g~~-~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~~~i  127 (300)
T 2qc5_A           60 PDAKVMCLIVSS----LGDIWFTENGANKIGKLSKK-GGF-TEYP---LPQPDSGPYGITEG--LNGD-IWFTQLNGDRI  127 (300)
T ss_dssp             TTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE-EEEE---CSSTTCCEEEEEEC--STTC-EEEEETTTTEE
T ss_pred             CCCcceeEEECC----CCCEEEEecCCCeEEEECCC-CCe-EEec---CCCCCCCCccceEC--CCCC-EEEEccCCCeE
Confidence            346788999887    678887776555 9999866 443 2222   11123455556554  8887 77777668899


Q ss_pred             EEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          111 RVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       111 ~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      ..+|.. ++... .+......+..+++.+ +++++++...++.|..+|. +++... +.. ......+.++++++ ++.+
T Consensus       128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~-~g~l  201 (300)
T 2qc5_A          128 GKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEE-YPL-PTNAAAPVGITSGN-DGAL  201 (300)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECT-TSSE
T ss_pred             EEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEE-eeC-CCCCCCcceEEECC-CCCE
Confidence            999987 55442 2333456789999999 7777766666788999998 555443 321 12445789999998 7787


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~  267 (346)
                      +++....+.|.+||... ..                      .......+...+.++.++  +++.++...++.|..||.
T Consensus       202 ~v~~~~~~~i~~~~~~g-~~----------------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          202 WFVEIMGNKIGRITTTG-EI----------------------SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEETTTTEEEEECTTC-CE----------------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             EEEccCCCEEEEEcCCC-cE----------------------EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            77766677899998832 10                      011111234456778877  665555556789999998


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      . ++.        ...........+.++++.+++  .+.++.. . .|..+|.+
T Consensus       259 ~-g~~--------~~~~~~~~~~~~~~i~~~~~g--~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          259 D-NTI--------QEYQLQTENAEPHGITFGKDG--SVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             T-SCE--------EEEECCSTTCCCCCEEECTTS--CEEEECS-S-EEEEEEEC
T ss_pred             C-CcE--------EEEECCccCCccceeEeCCCC--CEEEEcc-C-ceEEeCCC
Confidence            3 321        111122233467888999888  4444444 4 67766653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=4.6e-11  Score=100.76  Aligned_cols=232  Identities=10%  Similarity=0.041  Sum_probs=141.0

Q ss_pred             ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCe
Q 019117           85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGI  162 (346)
Q Consensus        85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~  162 (346)
                      ....+++.  ++++ ++++...++.|++||..+++....... ..... ++|+| +++.|+++..++  .|.+++...+.
T Consensus       132 ~P~~la~d--~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAV--GNNT-VLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEEC--STTE-EEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEe--CCCC-EEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc
Confidence            34445554  8888 777777789999999988776555443 23334 99999 777888777765  78888887655


Q ss_pred             eEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          163 CILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       163 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      ....+.... .....+.+++++|.++. |+.+..++.|..||.............                   ...+..
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~-------------------~~g~~~  265 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLE-------------------LSGSLG  265 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECC-------------------CCSCCC
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEeccc-------------------ccCCCC
Confidence            443431110 14567789999984455 444677889999998763211110000                   000111


Q ss_pred             ce--EEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccc---ccc--ccccCCCcCeeEEEEeecCCcceEEEEc-
Q 019117          242 YV--DCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTA---DIL--QKYPVPECDIWFIKFSCDFHYNAAAIGN-  310 (346)
Q Consensus       242 ~i--~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~--~~~~~~~~~v~~~~~s~~~~~~~l~~~~-  310 (346)
                      .-  ..++|+   +.++++-...+.|+.|+...... ......   ...  ......-.....+++++++  .++++-+ 
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--~lyvad~~  342 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG--NFYIVDGF  342 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC--CEEEEETT
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC--CEEEEeCC
Confidence            11  266676   34555556688999998764310 000000   000  0000112357889999998  6777777 


Q ss_pred             CCCcEEEEEcCCCCcceeeee---------------eeeEEEEEecCCCC
Q 019117          311 REGKIFVWELQSSPPVLIARL---------------ICFSLHVKYNPQSV  345 (346)
Q Consensus       311 ~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~spdg~  345 (346)
                      .++.|+.|++.++........               -..+..++++|+|.
T Consensus       343 ~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~  392 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG  392 (409)
T ss_dssp             TTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence            899999999877764333322               12478899999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=1.4e-09  Score=88.95  Aligned_cols=226  Identities=14%  Similarity=-0.012  Sum_probs=134.4

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      -..+..|+|.   .+.++++...++ |..|+..++.. ..+.      ....+.++++.  ++|+ ++++. .+ .|.+|
T Consensus        50 ~~egp~~~~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~------~~~~v~~i~~~--~dg~-l~v~~-~~-gl~~~  114 (326)
T 2ghs_A           50 LGEGPTFDPA---SGTAWWFNILERELHELHLASGRK-TVHA------LPFMGSALAKI--SDSK-QLIAS-DD-GLFLR  114 (326)
T ss_dssp             BEEEEEEETT---TTEEEEEEGGGTEEEEEETTTTEE-EEEE------CSSCEEEEEEE--ETTE-EEEEE-TT-EEEEE
T ss_pred             CCcCCeEeCC---CCEEEEEECCCCEEEEEECCCCcE-EEEE------CCCcceEEEEe--CCCe-EEEEE-CC-CEEEE
Confidence            3567889982   246666665555 99999776543 2222      23456667665  8887 65544 34 59999


Q ss_pred             EccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeC------CCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          114 DVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       114 d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      |..+++.......    ....+.+++++| ++.++++...      .+.|..++  +++......    .......++|+
T Consensus       115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~----~~~~~~~i~~s  187 (326)
T 2ghs_A          115 DTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA----DISIPNSICFS  187 (326)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE----EESSEEEEEEC
T ss_pred             ECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC----CCcccCCeEEc
Confidence            9888775432221    124688999999 7776665432      24455555  455433222    33457799999


Q ss_pred             CCCCcEE-EEEecCCeEEEEEcc--cc-ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          184 PSDIYRI-ASCGMDNTVKIWSMK--EF-WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       184 ~~~~~~l-~s~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      | +++.+ ++.+.++.|.+||+.  +. ....                  ......+.........+.++  |++.++..
T Consensus       188 ~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~------------------~~~~~~~~~~~~~p~gi~~d~~G~lwva~~  248 (326)
T 2ghs_A          188 P-DGTTGYFVDTKVNRLMRVPLDARTGLPTGK------------------AEVFIDSTGIKGGMDGSVCDAEGHIWNARW  248 (326)
T ss_dssp             T-TSCEEEEEETTTCEEEEEEBCTTTCCBSSC------------------CEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             C-CCCEEEEEECCCCEEEEEEcccccCCcccC------------------ceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence            9 66644 555567899999986  31 1000                  00011111122345567776  66666555


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEcCC
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNRE  312 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~d  312 (346)
                      .++.|.+||.. ++         .+..+..+...+.+++|+ +++. .++++...+
T Consensus       249 ~~~~v~~~d~~-g~---------~~~~i~~~~~~~~~~af~g~d~~-~L~vt~~~~  293 (326)
T 2ghs_A          249 GEGAVDRYDTD-GN---------HIARYEVPGKQTTCPAFIGPDAS-RLLVTSARE  293 (326)
T ss_dssp             TTTEEEEECTT-CC---------EEEEEECSCSBEEEEEEESTTSC-EEEEEEBCT
T ss_pred             CCCEEEEECCC-CC---------EEEEEECCCCCcEEEEEecCCCC-EEEEEecCC
Confidence            56889999984 43         344555556679999998 8874 233444433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.39  E-value=2.6e-13  Score=113.00  Aligned_cols=204  Identities=8%  Similarity=-0.013  Sum_probs=116.7

Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-  174 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-  174 (346)
                      ++. .+++++.||.|..||..+++.+..+..  +.+.+..+.. ++..+++++.|+.|+.||..+++.+..+.   .+. 
T Consensus         8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~---~~~~   80 (369)
T 2hz6_A            8 PET-LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLP---FTIP   80 (369)
T ss_dssp             CTT-EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS---CCHH
T ss_pred             eCC-EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeee---ccCc
Confidence            355 899999999999999999999988875  4555555555 66688888899999999999998877665   121 


Q ss_pred             cceE-EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEE
Q 019117          175 NEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI  253 (346)
Q Consensus       175 ~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  253 (346)
                      ..+. +..+.  .+..+++++.++.|..||..+++..                       ..+..+.. +. ....++.+
T Consensus        81 ~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~-----------------------w~~~~~~~-~~-~~p~~~~v  133 (369)
T 2hz6_A           81 ELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQ-----------------------QTLSSAFA-DS-LSPSTSLL  133 (369)
T ss_dssp             HHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------------------------E
T ss_pred             cccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEE-----------------------EEecCCCc-cc-ccccCCEE
Confidence            1111 11111  3346778888999999999984431                       11111110 00 01137788


Q ss_pred             EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC-CcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF-HYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      ++++.|+.|+.||..+++...         .+....  .....++.+. ....+++++.||.|+.||..+++.+-...+.
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W---------~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRW---------NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCC---------EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred             EEEecCCEEEEEECCCCCEEE---------eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            899999999999999887322         221110  1112233321 0025677888999999999999877666665


Q ss_pred             eeEE-EEEecCCC
Q 019117          333 CFSL-HVKYNPQS  344 (346)
Q Consensus       333 ~~~~-~~~~spdg  344 (346)
                      ..+. ...+++||
T Consensus       203 ~pv~~~~~~~~dg  215 (369)
T 2hz6_A          203 SPVVAFYVWQREG  215 (369)
T ss_dssp             SCEEEEEECTTSS
T ss_pred             CceEEEEEecCCc
Confidence            5543 35566665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=1.6e-09  Score=88.69  Aligned_cols=216  Identities=7%  Similarity=-0.075  Sum_probs=134.2

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      ..|.  +++..++++...++.|..||..+++.. .+. ....+.++++++ ++.++++. .+ .|.+||..+++......
T Consensus        54 p~~~--~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           54 PTFD--PASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEE--TTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CeEe--CCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            5565  765537777777899999999877643 232 346799999999 77766654 44 49999998877543322


Q ss_pred             ccC-CCCcceEEEEecCCCCcEEEEEec------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          169 GAG-GHRNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       169 ~~~-~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      ... .....+..++++| +++++++...      .+.|..++  ..+                        ...+..+..
T Consensus       127 ~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~------------------------~~~~~~~~~  179 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK------------------------VTKLFADIS  179 (326)
T ss_dssp             SSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE------------------------EEEEEEEES
T ss_pred             CCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc------------------------EEEeeCCCc
Confidence            111 1134688999999 7776665432      23455554  211                        111112223


Q ss_pred             ceEEEEec--CCEEEEE-eecCeEEEEcCC--CC-CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117          242 YVDCNRWL--GDFILSK-SVDNEIVLWEPK--MK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  315 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~-~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  315 (346)
                      ....++|+  ++.++.+ +.++.|.+|++.  ++ +...    ......+......+..+++.+++  .+.++...++.|
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G--~lwva~~~~~~v  253 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEG--HIWNARWGEGAV  253 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTS--CEEEEEETTTEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCC--CEEEEEeCCCEE
Confidence            45678887  6655444 557899999986  44 2110    01122222233456788899888  566665566889


Q ss_pred             EEEEcCCCCcceeeeeee-eEEEEEec-CCCC
Q 019117          316 FVWELQSSPPVLIARLIC-FSLHVKYN-PQSV  345 (346)
Q Consensus       316 ~iwd~~~~~~~~~~~~~~-~~~~~~~s-pdg~  345 (346)
                      .+||. +++.+..+.... .+.+++|+ ||++
T Consensus       254 ~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          254 DRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  284 (326)
T ss_dssp             EEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             EEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence            99998 566555555444 47899998 8875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=5.1e-10  Score=92.83  Aligned_cols=225  Identities=12%  Similarity=0.074  Sum_probs=137.2

Q ss_pred             CCCCcEEEEeecCCeEEEEEccCc----ceeeeec-------cCCCceEEEEEeCCCCceEEEeeCC------CCEEEEe
Q 019117           95 VDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV-------GHGDSINEIRTQPLKPSLVVSASKD------ESVRLWN  157 (346)
Q Consensus        95 ~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd  157 (346)
                      ++++.+++.+..++.|.++|+.+.    +.++++.       .....-..+...| ++ +++++..+      +.|.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            667756777788899999998755    5555552       1112456778889 66 76666555      7899999


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-------------------cCCeEEEEEccccceeeeeceeec
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-------------------MDNTVKIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~  218 (346)
                      ..+.+.+..+....+....-+.+.|+| +++.+++..                   .+.+|.+||+.+.+          
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k----------  239 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK----------  239 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----------
T ss_pred             CCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----------
Confidence            999999998874322223345688899 888888874                   36899999998732          


Q ss_pred             CCCCCCCCccceeceEEEeec--ccceEEEEe--c--CCEEEEEe------ecCeEEEEcCCCCCCCCCC----ccccc-
Q 019117          219 DLPSKFPTKYVQFPVFIASVH--SNYVDCNRW--L--GDFILSKS------VDNEIVLWEPKMKEQSPGE----GTADI-  281 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~--~~~l~~~~------~d~~i~iwd~~~~~~~~~~----~~~~~-  281 (346)
                                   .+.++..-  ......+.|  +  ++++.+++      .+++|.+|..+.++.....    ..... 
T Consensus       240 -------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          240 -------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             -------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             -------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence                         12222211  112233434  4  66666665      4567877665432110000    00000 


Q ss_pred             --c----ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC-CCccee--eeeee---------------eEEE
Q 019117          282 --L----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPVLI--ARLIC---------------FSLH  337 (346)
Q Consensus       282 --~----~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~---------------~~~~  337 (346)
                        +    ..+.+-......+.+|+|++ .+.++.-..+.|.+||+.. +++...  ....+               .+..
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGr-fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~  385 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDK-FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM  385 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSC-EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred             ccccccccccccCCCceeEEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence              0    00111123577899999995 3445556688999999864 333332  22321               3678


Q ss_pred             EEecCCCCC
Q 019117          338 VKYNPQSVY  346 (346)
Q Consensus       338 ~~~spdg~~  346 (346)
                      +++||||++
T Consensus       386 ~~lSpDGk~  394 (462)
T 2ece_A          386 LEISRDGRR  394 (462)
T ss_dssp             EEECTTSSE
T ss_pred             EEEcCCCCE
Confidence            999999974

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=1.4e-09  Score=88.10  Aligned_cols=234  Identities=12%  Similarity=0.029  Sum_probs=138.5

Q ss_pred             ecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           28 KLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        28 ~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .+..+........|+|    +++ ++++...++ |..|+. +++ ...+..     ....+..+++.  ++|+ ++++..
T Consensus        39 ~l~~~~~~~egp~~~~----~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~-----~~~~~~gl~~d--~dG~-l~v~~~  104 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWE----AQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD-----ATAFTNGNAVD--AQQR-LVHCEH  104 (305)
T ss_dssp             EEECCCSSEEEEEEEG----GGTEEEEEETTTTEEEEEET-TSC-EEEEEE-----SCSCEEEEEEC--TTSC-EEEEET
T ss_pred             EEecCCcCccCCeEeC----CCCEEEEEECCCCEEEEEeC-CCC-EEEEeC-----CCCccceeeEC--CCCC-EEEEEC
Confidence            3444556678899998    666 666666555 999986 444 333322     23345555554  8998 666666


Q ss_pred             cCCeEEEEEccCcceeeeecc----CCCceEEEEEeCCCCceEEE----eeC-------------CCCEEEEecCCCeeE
Q 019117          106 INGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVS----ASK-------------DESVRLWNVQTGICI  164 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~  164 (346)
                      .++.|.+|+.+ ++.......    ....+.++++.| ++.++++    |..             .+.|..+|..+++..
T Consensus       105 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~  182 (305)
T 3dr2_A          105 GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ  182 (305)
T ss_dssp             TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred             CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence            66889999976 553222211    123467899999 7787776    332             245777777666543


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      ...     .......++|+| +++.|+.+...      +.|.+|++....  ....                 ... ...
T Consensus       183 ~~~-----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~-----------------~~~-~~~  236 (305)
T 3dr2_A          183 RMA-----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDR-----------------RHF-ASV  236 (305)
T ss_dssp             EEE-----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEE-----------------EEE-ECC
T ss_pred             EEe-----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCC-----------------eEE-EEC
Confidence            322     123567899999 77766666554      689999987522  0000                 000 001


Q ss_pred             cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117          239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  316 (346)
Q Consensus       239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  316 (346)
                      .......+.++  |+ |.++..+ .|.+|+... +         .+..+..+. .+..++|++++  +.|..++.++ +.
T Consensus       237 ~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g-~---------~~~~~~~~~-~~~~~~f~~d~--~~L~it~~~~-l~  300 (305)
T 3dr2_A          237 PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG-Q---------LLGHIPTPG-TASNCTFDQAQ--QRLFITGGPC-LW  300 (305)
T ss_dssp             SSSCCCSEEECTTSC-EEECCSS-EEEEECTTS-C---------EEEEEECSS-CCCEEEECTTS--CEEEEEETTE-EE
T ss_pred             CCCCCCeEEECCCCC-EEEecCC-cEEEECCCC-C---------EEEEEECCC-ceeEEEEeCCC--CEEEEEcCCe-EE
Confidence            12223345555  66 4455544 599999853 3         344444444 58889999887  4566655554 44


Q ss_pred             EEE
Q 019117          317 VWE  319 (346)
Q Consensus       317 iwd  319 (346)
                      .++
T Consensus       301 ~~~  303 (305)
T 3dr2_A          301 MLP  303 (305)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=6.7e-11  Score=97.43  Aligned_cols=279  Identities=9%  Similarity=-0.089  Sum_probs=161.6

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeeeecCC--CccceE
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDED--KEESFY   87 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~   87 (346)
                      ..++.+.++.....+  .++|+|    +++.+.++.           ++.|.+||..+++.+..+.......  ......
T Consensus        54 ~t~~v~~~i~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~  127 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH  127 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred             CCCeEEEEEeCCCCC--ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc
Confidence            345556666544456  799999    677777765           2339999999999888876320000  001122


Q ss_pred             EEEEEEcCCCCcEEEEeec--CCeEEE--EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC---
Q 019117           88 TVSWACNVDGIPFLVAGGI--NGIIRV--IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---  160 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---  160 (346)
                      .+.+  +|||+ +++++..  +..+.+  +|+.+   +..+... +.   +.+.|.+...+++.+.|+.+.+.|+.+   
T Consensus       128 ~ia~--SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          128 IIGN--CASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             SEEE--CTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             eEEE--cCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            2444  59999 7777754  467888  99877   4444321 11   223453555667778899999999886   


Q ss_pred             --CeeEEEe-cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          161 --GICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       161 --~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                        ++..... ....-...+.   . .+.++.+++ .+. +.|.+.|+...............       .  ....  ..
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~-vs~-~~V~viD~~~~~~~v~~~~~~~~-------~--~~~~--~~  260 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVW-AVA-SSILQGDIPAAGATMKAAIDGNE-------S--GRKA--DN  260 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEE-CBS-SCCEEEECCSSCCEEECCCCSSC-------T--HHHH--TT
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEE-EcC-CEEEEEECCCCcceEEEEEEecc-------c--cccc--cc
Confidence              4332110 0000012222   3 443444444 444 89999998652111110000000       0  0000  00


Q ss_pred             ecccceEEEEec--CCEEEEEee---------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceE
Q 019117          238 VHSNYVDCNRWL--GDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  306 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  306 (346)
                      ..+.....+.++  ++.++++..         ++.+.++|+.+.+         .+..+.... ....++|+||++ .++
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------vv~~i~vg~-~p~gi~~s~Dg~-~l~  329 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISNGH-DSDAIIAAQDGA-SDN  329 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEEEE-EECEEEECCSSS-CEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---------EEEEEECCC-CcceEEECCCCC-EEE
Confidence            011111113344  666665432         2356699999887         555555443 588999999995 356


Q ss_pred             EEEc-CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          307 AIGN-REGKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       307 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      ++.. .++.|.++|+.+++.+..+.....+..+++.+.
T Consensus       330 va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          330 YANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             EEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence            6666 689999999999998888887777888887764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.36  E-value=7.4e-09  Score=82.16  Aligned_cols=250  Identities=6%  Similarity=-0.100  Sum_probs=145.6

Q ss_pred             cEEEEEcCCcEEEEEeccCcee-----eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117           50 NVFATVGGNRVTVYQCLEGGVI-----AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF  124 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  124 (346)
                      .+|..+..+.|+.+++......     ..+..     .......+++.  +++..++++-..++.|..+++........+
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~~~~~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHI-----PAKVIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-----EEEEEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecC-----CCCcEEEEEEe--cCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence            3455555556888887654321     11111     12234445555  766535556566789999998766543333


Q ss_pred             ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec--CCeEEEE
Q 019117          125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--DNTVKIW  202 (346)
Q Consensus       125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iw  202 (346)
                      .........+++.+.++.++++-...+.|.++++.... ...+..  ........++++|.++.++++...  .+.|..+
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEE--CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            33335678999998445566666667899999986433 222221  122567899999844554454433  4678888


Q ss_pred             EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccc
Q 019117          203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~  279 (346)
                      ++.....                       .............++++  ++.| ++-...+.|.++|+.....       
T Consensus       152 ~~dg~~~-----------------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-------  201 (267)
T 1npe_A          152 HMDGTNR-----------------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-------  201 (267)
T ss_dssp             ETTSCCC-----------------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-------
T ss_pred             ecCCCCc-----------------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-------
Confidence            8764110                       00000112345667776  4555 4445578999999875431       


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--eEEEEEecCCCC
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--FSLHVKYNPQSV  345 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~spdg~  345 (346)
                        ...... ......++.  ++. .++++....+.|..+|..+++.+.......  .+..+++.|++.
T Consensus       202 --~~~~~~-~~~P~gi~~--d~~-~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          202 --RKVLEG-LQYPFAVTS--YGK-NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             --EEEEEC-CCSEEEEEE--ETT-EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             --EEEecC-CCCceEEEE--eCC-EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence              111111 123345554  342 466666677899999999887666655433  367899998864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.35  E-value=3.9e-10  Score=101.41  Aligned_cols=277  Identities=10%  Similarity=0.067  Sum_probs=155.5

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEccCcceee
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHK  122 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~  122 (346)
                      ..++.++.++ |..+|..+|+.+..............+...-..  .++.  ++.+.      .+|.|..||..+|+.+.
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTE--EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCE--EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            4566666566 999999999987766542010000111100011  1444  44443      36899999999999887


Q ss_pred             eeccCC-------------------------------CceEEEEEeCCCCceEEEeeCCCC-------------------
Q 019117          123 SFVGHG-------------------------------DSINEIRTQPLKPSLVVSASKDES-------------------  152 (346)
Q Consensus       123 ~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~d~~-------------------  152 (346)
                      .+....                               ..-..+++.| +..+++.+..++.                   
T Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            764210                               0112577888 6778888877763                   


Q ss_pred             EEEEecCCCeeEEEecccCCCC-------cceEEEEecCCCCc---EEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117          153 VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  222 (346)
Q Consensus       153 i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  222 (346)
                      |..+|.++|+.+..++... |.       ..+....... ++.   .++.++.+|.++++|.++++......+.......
T Consensus       277 v~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~  354 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTP-GDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK  354 (689)
T ss_dssp             EEEEETTTCCEEEEEESST-TCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEccCCceeEeeecCC-cccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence            9999999999998886321 21       1222222222 343   7889999999999999987654322211000000


Q ss_pred             C---CCCcc-----------ceeceEEEeeccc--ceEEEEec--CCEEEEEee--------------------------
Q 019117          223 K---FPTKY-----------VQFPVFIASVHSN--YVDCNRWL--GDFILSKSV--------------------------  258 (346)
Q Consensus       223 ~---~~~~~-----------~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~--------------------------  258 (346)
                      .   .....           .............  .-..++++  .+++++...                          
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence            0   00000           0000000000000  00012333  233333211                          


Q ss_pred             -------------------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          259 -------------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       259 -------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                                         +|.|+.||+.+++         .+..+..+. ++..-.++..+  .+++.++.||.|+.||
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~~~-~~~~g~~~tag--glvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ---------AAWEVPYVT-IFNGGTLSTAG--NLVFEGSADGRVIAYA  502 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEEEEEEETTTTE---------EEEEEEESS-SCCCCEEEETT--TEEEEECTTSEEEEEE
T ss_pred             cccccCcccccCCCCCCCcceeEEEEECCCCC---------eEeEccCCC-CccCccceECC--CEEEEECCCCcEEEEE
Confidence                               4789999999887         333333322 23333566666  5888899999999999


Q ss_pred             cCCCCcceeeeeeeeE--EEEEecCCCC
Q 019117          320 LQSSPPVLIARLICFS--LHVKYNPQSV  345 (346)
Q Consensus       320 ~~~~~~~~~~~~~~~~--~~~~~spdg~  345 (346)
                      .++|+.+-.+++...+  .-+.|+.||+
T Consensus       503 ~~tG~~lw~~~~~~~~~~~p~ty~~~G~  530 (689)
T 1yiq_A          503 ADTGEKLWEQPAASGVMAAPVTYSVDGE  530 (689)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCCCccceeeeCCCCcccCceEEEECCE
Confidence            9999988777766443  2366677764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=8.7e-10  Score=89.37  Aligned_cols=216  Identities=7%  Similarity=-0.081  Sum_probs=135.5

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                      ....|.  ++|+.++++...++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|.+|+.. ++....
T Consensus        48 egp~~~--~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           48 EGPAWW--EAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             EEEEEE--GGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             cCCeEe--CCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEE
Confidence            345666  888746777778899999997 444 344555667789999999 77766665566789999986 554332


Q ss_pred             ecccCC-CCcceEEEEecCCCCcEEEE----Eec-------------CCeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117          167 FAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  228 (346)
Q Consensus       167 ~~~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
                      .....+ ....+..++++| ++.++++    |..             .+.|..||..+.+                    
T Consensus       122 ~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--------------------  180 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--------------------  180 (305)
T ss_dssp             ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--------------------
T ss_pred             EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--------------------
Confidence            221111 123567899998 8888876    332             2456666664421                    


Q ss_pred             ceeceEEEeecccceEEEEec--CCEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          229 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                          +..+. .......++|+  ++.|+.+...      +.|.+|++.....    ........  ...+....+++.++
T Consensus       181 ----~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l----~~~~~~~~--~~~~~pdgi~~d~~  249 (305)
T 3dr2_A          181 ----LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL----HDRRHFAS--VPDGLPDGFCVDRG  249 (305)
T ss_dssp             ----CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE----EEEEEEEC--CSSSCCCSEEECTT
T ss_pred             ----EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc----cCCeEEEE--CCCCCCCeEEECCC
Confidence                11111 23345677887  6667766654      7899999875320    00001111  12334566889998


Q ss_pred             CCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          301 FHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      +  + |.++..+ .|.+|+. +++.+..+.....+..++|+|+++
T Consensus       250 G--~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~  289 (305)
T 3dr2_A          250 G--W-LWSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQ  289 (305)
T ss_dssp             S--C-EEECCSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSC
T ss_pred             C--C-EEEecCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCC
Confidence            8  4 4444444 4999998 466566666666678899999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.32  E-value=4.1e-10  Score=101.08  Aligned_cols=277  Identities=8%  Similarity=0.023  Sum_probs=157.3

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeEEEEEccCcceee
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK  122 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~  122 (346)
                      ..++.++.++ +..+|..+++.+..+...........+...-..  .++  .++.++.      ++.|..+|..+++.+.
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG--KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC--EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            4555666555 999999999987776532010000111111111  134  4555543      6999999999999887


Q ss_pred             eeccCCCc--------------------------------eEEEEEeCCCCceEEEeeCCC-------------------
Q 019117          123 SFVGHGDS--------------------------------INEIRTQPLKPSLVVSASKDE-------------------  151 (346)
Q Consensus       123 ~~~~~~~~--------------------------------v~~~~~~~~~~~~l~s~~~d~-------------------  151 (346)
                      .+......                                ...+++.| +...++.+..++                   
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            76532211                                13577888 667777776553                   


Q ss_pred             CEEEEecCCCeeEEEecccCCCC-------cceEEEEecCCCC---cEEEEEecCCeEEEEEccccceeeeeceeecCCC
Q 019117          152 SVRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP  221 (346)
Q Consensus       152 ~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  221 (346)
                      .|..+|.++++.+..++... |.       ....-+.... ++   ..++.++.+|.+.++|..+++......+......
T Consensus       284 sv~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETP-GDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             EEEEECTTTCCEEEEEESST-TCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             EEEEEECCCCCEEEEEecCC-CcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence            49999999999998876421 21       1222233333 45   6889999999999999998665433221110000


Q ss_pred             CCC--CCccc--------eeceEEEeecccc--eEEEEec--CCEEEEEee-----------------------------
Q 019117          222 SKF--PTKYV--------QFPVFIASVHSNY--VDCNRWL--GDFILSKSV-----------------------------  258 (346)
Q Consensus       222 ~~~--~~~~~--------~~~~~~~~~~~~~--i~~~~~~--~~~l~~~~~-----------------------------  258 (346)
                      ...  ..+..        ...........+.  -..++++  ..++++...                             
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence            000  00000        0000000000000  0123343  344444332                             


Q ss_pred             --------------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          259 --------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       259 --------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                                    .+.|..||+.+++         .+.++.. ..++....++.++  .+++.++.||.+++||..+++
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~-~~~~~~g~~~~~g--~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQK---------AAWSVEH-VSPWNGGTLTTAG--NVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTE---------EEEEEEE-SSSCCCCEEEETT--TEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccCCCCCccEEEEEeCCCCc---------EEeecCC-CCCCcCcceEeCC--CEEEEECCCCcEEEEECCCCc
Confidence                          2789999999887         3333332 2234445577777  578888999999999999999


Q ss_pred             cceeeeeeeeE--EEEEecCCCC
Q 019117          325 PVLIARLICFS--LHVKYNPQSV  345 (346)
Q Consensus       325 ~~~~~~~~~~~--~~~~~spdg~  345 (346)
                      .+..+.+...+  .-+.|+++|+
T Consensus       510 ~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          510 KLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTE
T ss_pred             eeeeeeCCCCcccCCEEEEeCCE
Confidence            88777765432  2255556653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=8.3e-13  Score=109.98  Aligned_cols=179  Identities=8%  Similarity=-0.021  Sum_probs=95.9

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG  126 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  126 (346)
                      ++..+++++.++ |+.||..+++.+..+..  .     .+.+..+.  .++. .+++++.||.|+.||..+++.+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~-----~~~s~p~~--~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--D-----PVLQVPTH--VEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--C-----CSCCCC-------C-CEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--C-----CceecceE--cCCC-EEEEeCCCCEEEEEECCCCceeeeeec
Confidence            356777777766 99999999998777653  1     12222222  5566 777788999999999999987766543


Q ss_pred             CCC-ceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEc
Q 019117          127 HGD-SIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM  204 (346)
Q Consensus       127 ~~~-~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  204 (346)
                      +.. .+. ...+.  .+..+++++.|+.|..||.++|+.+..+.   .+.    ...++| .+..+++++.|+.|..||.
T Consensus        78 ~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~---~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           78 TIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLS---SAF----ADSLSP-STSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             CHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCS
T ss_pred             cCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEec---CCC----cccccc-cCCEEEEEecCCEEEEEEC
Confidence            321 110 00111  24567788889999999999999988876   222    234566 6778888999999999999


Q ss_pred             cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC-----CEEEEEeecCeEEEEcCCCCC
Q 019117          205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-----DFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      ++++......                     ....    ....+.+     ..+++++.||.|..||..+++
T Consensus       148 ~tG~~~W~~~---------------------~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          148 KTRELRWNAT---------------------YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             SSSSCCCEEE---------------------EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CCCCEEEeEe---------------------cccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            8844211111                     0011    1111222     567788899999999999887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=3.1e-09  Score=96.13  Aligned_cols=215  Identities=10%  Similarity=0.014  Sum_probs=124.5

Q ss_pred             EEEcCCCCcEEEE-----eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC-------------C
Q 019117           91 WACNVDGIPFLVA-----GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-------------S  152 (346)
Q Consensus        91 ~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------------~  152 (346)
                      +.++|||+ +||.     |+....|++||+.+++.+.... +......++|+ + ++.|+.++.+.             .
T Consensus       134 ~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          134 LSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-G-NEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-T-TTEEEEEESSCCC-------CCCCE
T ss_pred             EEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-C-CCEEEEEEecCcccccccccCCCcE
Confidence            44569999 7773     3333579999999998654311 11113567898 4 45566555553             3


Q ss_pred             EEEEecCCCee--EEEecccCC-CCcceEEEEecCCCCcEEE-EEec---CCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117          153 VRLWNVQTGIC--ILIFAGAGG-HRNEVLSVDFHPSDIYRIA-SCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  225 (346)
Q Consensus       153 i~iwd~~~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (346)
                      |++|++.++..  ...+.. .. +......+.|+| ++++|+ +.+.   +..|.++|+.....                
T Consensus       210 v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~----------------  271 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENA----------------  271 (693)
T ss_dssp             EEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTC----------------
T ss_pred             EEEEECCCCcccceEEEec-CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCC----------------
Confidence            99999876643  222321 12 344578899999 666664 4332   25899999876311                


Q ss_pred             CccceeceEEEeecccceEEE-EecCCEEEEEe-e---cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          226 TKYVQFPVFIASVHSNYVDCN-RWLGDFILSKS-V---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                            ....+..+....... ...++.|+..+ .   .+.|..+|+.++..       .....+..+...+.  .|+++
T Consensus       272 ------~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          272 ------PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             ------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEEE
T ss_pred             ------ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEEE
Confidence                  223344444444443 22255554443 3   36799999987541       01223333444444  89999


Q ss_pred             CCcceEEEEc-CCC--cEEEEEcCCCCcceeeeee--eeEEEEEecCCCC
Q 019117          301 FHYNAAAIGN-REG--KIFVWELQSSPPVLIARLI--CFSLHVKYNPQSV  345 (346)
Q Consensus       301 ~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~--~~~~~~~~spdg~  345 (346)
                      +  ..|+... .++  .|++|++.++. .....+.  +.+..+.++|+++
T Consensus       337 g--~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          337 S--GYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             T--TEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS
T ss_pred             C--CEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC
Confidence            8  4555544 444  68999987553 2333322  3455677777765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=6.2e-09  Score=81.15  Aligned_cols=194  Identities=10%  Similarity=0.004  Sum_probs=126.4

Q ss_pred             EEEEEEEcCCCCcEEEEeec--CCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117           87 YTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      ..+.+.  +++. ++++.+.  ++.|+++|+.+++.+..+.-.. .....+++.  ++.+.++.-.++.+.++|..+.+.
T Consensus        24 ~Gl~~~--~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           24 QGLVYA--ENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEC--STTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             ccEEEe--CCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            445554  7765 5555443  6899999999999888775322 223456665  345666666789999999999999


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cc-
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HS-  240 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-  240 (346)
                      +..+..  + ...-..+  +++++.++ .+..++.|.++|..+.+.                       ...+..  +. 
T Consensus        99 ~~~i~~--g-~~~g~gl--t~Dg~~l~-vs~gs~~l~viD~~t~~v-----------------------~~~I~Vg~~~~  149 (266)
T 2iwa_A           99 IKNFTH--Q-MKDGWGL--ATDGKILY-GSDGTSILYEIDPHTFKL-----------------------IKKHNVKYNGH  149 (266)
T ss_dssp             EEEEEC--C-SSSCCEE--EECSSSEE-EECSSSEEEEECTTTCCE-----------------------EEEEECEETTE
T ss_pred             EEEEEC--C-CCCeEEE--EECCCEEE-EECCCCeEEEEECCCCcE-----------------------EEEEEECCCCc
Confidence            998863  1 1222334  44244544 445688999999988432                       112211  11 


Q ss_pred             --cceEEEEecCCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCC-------------CcCeeEEEEeecCCcc
Q 019117          241 --NYVDCNRWLGDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-------------ECDIWFIKFSCDFHYN  304 (346)
Q Consensus       241 --~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~  304 (346)
                        ..+..+.|.+..+.+.. .++.|.+.|+.+++.         +..+...             ......++|+|+++ +
T Consensus       150 p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V---------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-~  219 (266)
T 2iwa_A          150 RVIRLNELEYINGEVWANIWQTDCIARISAKDGTL---------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-R  219 (266)
T ss_dssp             ECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCE---------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-E
T ss_pred             ccccceeEEEECCEEEEecCCCCeEEEEECCCCcE---------EEEEECCCcccccccccccccCceEEEEEcCCCC-E
Confidence              12455556533444444 578999999999873         3333221             13568999999986 6


Q ss_pred             eEEEEcCCCcEEEEEcCCCC
Q 019117          305 AAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       305 ~l~~~~~dg~i~iwd~~~~~  324 (346)
                      +++++...+.+.+.++....
T Consensus       220 lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          220 IFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTCSEEEEEEEEECC
T ss_pred             EEEECCCCCeEEEEEEeccc
Confidence            88889899999999987754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.20  E-value=1.9e-09  Score=88.84  Aligned_cols=222  Identities=7%  Similarity=-0.142  Sum_probs=129.0

Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee----------CCCCEEEEecCCCeeEEEecccCCC----C
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGH----R  174 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~----~  174 (346)
                      .|.++|..+++.+.++.....+  .+.++| +++.++++.          .++.|.+||+.+++.+..+....+.    .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            8899999999999998865555  799999 777777665          4788999999999999998631000    1


Q ss_pred             cceEEEEecCCCCcEEEEEec--CCeEEE--EEccccceeeeec-e---eecC----CCCCCCCccc-----------ee
Q 019117          175 NEVLSVDFHPSDIYRIASCGM--DNTVKI--WSMKEFWTYVEKS-F---TWTD----LPSKFPTKYV-----------QF  231 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~-~---~~~~----~~~~~~~~~~-----------~~  231 (346)
                      .....++++| ++++++++..  +..|.+  +|+.+. ...... .   ....    .......+..           ..
T Consensus       124 ~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~tv-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          124 PRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDD-QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEE-EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhhc-eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            3467899999 7777777764  457888  888761 111000 0   0000    0000000000           00


Q ss_pred             ceE----EEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC----------CCcCeeEEEE
Q 019117          232 PVF----IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWFIKF  297 (346)
Q Consensus       232 ~~~----~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~  297 (346)
                      ...    .+.....+. . ...+..++..+. +.|.+.|..+....       .+..+..          .......+++
T Consensus       202 v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~-------v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGAT-------MKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCE-------EECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             EEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcce-------EEEEEEeccccccccccccCcceeeEE
Confidence            000    000000111 1 111444444445 78888887643210       1111110          0111222689


Q ss_pred             eecCCcceEEEEc---C-----CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          298 SCDFHYNAAAIGN---R-----EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       298 s~~~~~~~l~~~~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      +||++ +++++..   .     ++.+.++|+.+.+.+..+.....+..++|+|||++
T Consensus       272 s~dg~-~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~  327 (368)
T 1mda_H          272 LKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             ETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSC
T ss_pred             cCCCC-EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCE
Confidence            99985 2333322   2     23566999999998888888888999999999973

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.18  E-value=2.7e-08  Score=83.09  Aligned_cols=231  Identities=11%  Similarity=0.019  Sum_probs=138.6

Q ss_pred             cEEEEEcCC-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117           50 NVFATVGGN-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG  128 (346)
Q Consensus        50 ~~la~~~~~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  128 (346)
                      ..+..++.+ .|..+|..+++.........     ........   .++  .++.++.++.|..+|..+++.+.......
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~---~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~  173 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAG-----EALSRPVV---SDG--LVLIHTSNGQLQALNEADGAVKWTVNLDM  173 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSS-----CCCSCCEE---ETT--EEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCC-----ceEcCCEE---ECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence            344444444 49999998888766554211     10000111   233  67788889999999999999887765432


Q ss_pred             Cce-----EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cceEE---EEecC-CCCcEEEEEecCCe
Q 019117          129 DSI-----NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEVLS---VDFHP-SDIYRIASCGMDNT  198 (346)
Q Consensus       129 ~~v-----~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~---~~~~~-~~~~~l~s~~~d~~  198 (346)
                      ...     ......   +..++.+..++.|..+|..+++.+.......... ..+..   +...| ..+..++.++.++.
T Consensus       174 ~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~  250 (376)
T 3q7m_A          174 PSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN  250 (376)
T ss_dssp             -----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred             CceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence            211     122222   3467778889999999999999888775211000 00000   10111 02345777778899


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  278 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  278 (346)
                      +..+|..+++...                       ...  ......+...++.++.++.++.|..+|..+++.      
T Consensus       251 l~~~d~~tG~~~w-----------------------~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~------  299 (376)
T 3q7m_A          251 LTALDLRSGQIMW-----------------------KRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVT------  299 (376)
T ss_dssp             EEEEETTTCCEEE-----------------------EEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCE------
T ss_pred             EEEEECCCCcEEe-----------------------ecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcE------
Confidence            9999998743211                       111  112334445588888889999999999998873      


Q ss_pred             cccccccc-CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          279 ADILQKYP-VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       279 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                         +.... .....+......  +  ..|+.++.+|.|+++|..+++.+.....
T Consensus       300 ---~w~~~~~~~~~~~~~~~~--~--~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          300 ---LWTQSDLLHRLLTSPVLY--N--GNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             ---EEEECTTTTSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ---EEeecccCCCcccCCEEE--C--CEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence               22222 111112222222  3  3688888999999999999987665554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.17  E-value=3.2e-08  Score=77.19  Aligned_cols=186  Identities=11%  Similarity=-0.030  Sum_probs=125.0

Q ss_pred             ceeeeeccCCC--ceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      +.+.+++ |..  ....+.|++ ++.++++.+.  ++.|.++|+.+++.+..+...  .......+++.  ++.+.++.-
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~--~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMD--DSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--TTCCEEEEEEE--TTEEEEEET
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--CCcceEEEEEe--CCEEEEEEe
Confidence            4555664 443  357999998 5655555543  579999999999999887631  22233456665  456666666


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP  274 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  274 (346)
                      .++.+.++|..+.+.                       +..+..-...-..++++++.++++..++.|.++|..+.+   
T Consensus        84 ~~~~v~viD~~t~~v-----------------------~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~---  137 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSN-----------------------IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK---  137 (266)
T ss_dssp             TCSEEEEEETTTTEE-----------------------EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC---
T ss_pred             cCCEEEEEECCCCcE-----------------------EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc---
Confidence            788999999988432                       223322111123466666666666678999999998876   


Q ss_pred             CCccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--------------eE
Q 019117          275 GEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--------------FS  335 (346)
Q Consensus       275 ~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~  335 (346)
                            .+..+...     -..+..+.|. ++  .+.+....++.|.+.|.++++.+..+.+.+              ..
T Consensus       138 ------v~~~I~Vg~~~~p~~~~nele~~-dg--~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~  208 (266)
T 2iwa_A          138 ------LIKKHNVKYNGHRVIRLNELEYI-NG--EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL  208 (266)
T ss_dssp             ------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred             ------EEEEEEECCCCcccccceeEEEE-CC--EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence                  33333321     1246678888 66  566777678899999999999877777642              35


Q ss_pred             EEEEecCCCC
Q 019117          336 LHVKYNPQSV  345 (346)
Q Consensus       336 ~~~~~spdg~  345 (346)
                      +.++|+|+++
T Consensus       209 nGIa~~~~~~  218 (266)
T 2iwa_A          209 NGIAWDQENK  218 (266)
T ss_dssp             EEEEEETTTT
T ss_pred             EEEEEcCCCC
Confidence            7899999985

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.16  E-value=5.2e-09  Score=86.30  Aligned_cols=241  Identities=7%  Similarity=-0.081  Sum_probs=140.6

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcC------CcEEEEEeccCceeeeEeeeec-CCCccceEEEEEEEcCCCCcEEEE
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGG------NRVTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~------~~v~i~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      +|...+.+|+++|    +++++++-..      ..|.+||+.+++.+..+..... ..+...+..+++.  +++...+++
T Consensus        64 ~~~~~p~gv~~d~----~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd--~~~g~~yvt  137 (343)
T 2qe8_A           64 ITFDTVLGIKSDG----NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD--LIHNFVYIS  137 (343)
T ss_dssp             CCCSCEEEEEECS----SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE--TTTTEEEEE
T ss_pred             cceeEeeEEEEcC----CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEe--cCCCEEEEE
Confidence            4567899999998    6777776543      4599999888876665542111 0112234556665  655424555


Q ss_pred             ee---cCCeEEEEEccCcceeeeeccCCCceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          104 GG---INGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       104 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      -.   .++.|.+||+.+++..+.+.+|..... ...+.+ ++..+.+.+.++.++.|.                 ..+..
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-----------------~~~~g  199 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-----------------LGVNG  199 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-----------------CCEEE
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-----------------cccce
Confidence            54   678999999998887776665432111 133445 556666667777765542                 13578


Q ss_pred             EEecCCCCcEEEEEecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          180 VDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      ++|+| +++.|+.+..++ .+..++........            .........+ ...++......++++  |+++++.
T Consensus       200 ia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~-~~~g~~g~pdgia~d~~G~l~va~  265 (343)
T 2qe8_A          200 IVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQ------------LTDAELGSKI-ERYSEKPICDGISIDKDHNIYVGD  265 (343)
T ss_dssp             EEECT-TSCEEEEEESSCSEEEEEEHHHHTCTT------------CCHHHHHTTC-EEEEECCSCSCEEECTTCCEEEEE
T ss_pred             eEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCC------------CChhhhhcce-EecccCCCCceEEECCCCCEEEEc
Confidence            99999 777777776655 45545433211000            0000000001 111233344456676  7788888


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      ..++.|.+||..+++.       ..+.... ....+.+++|.+++  .++++.+..+.+.+|+
T Consensus       266 ~~~~~V~~~d~~~G~~-------~~~~~~~-~~~~p~~va~~~~g--~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          266 LAHSAIGVITSADRAY-------KLLVTDE-KLSWTDSFNFGSDG--YLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             GGGTEEEEEETTTTEE-------EEEEECG-GGSCEEEEEECTTS--CEEEEECCGGGSGGGB
T ss_pred             cCCCeEEEEECCCCCE-------EEEEECC-ceecCCeeEECCCC--cEEEEeCccccccccc
Confidence            8899999999844431       1111111 23467899999987  5666666555554444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.13  E-value=5e-07  Score=71.51  Aligned_cols=222  Identities=9%  Similarity=0.019  Sum_probs=128.1

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..+..++|+|.   .+.++++-..++ |..++.........+.     ........+++.  +++..++++-...+.|.+
T Consensus        36 ~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-----~~~~~p~~ia~d--~~~~~lyv~d~~~~~I~~  105 (267)
T 1npe_A           36 KVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGEPTTIIR-----QDLGSPEGIALD--HLGRTIFWTDSQLDRIEV  105 (267)
T ss_dssp             EEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCCCEEEEC-----TTCCCEEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred             CcEEEEEEecC---CCEEEEEECCCCEEEEEecCCCCcEEEEE-----CCCCCccEEEEE--ecCCeEEEEECCCCEEEE
Confidence            34678999871   245555555444 9999976543322221     111344556655  765525555566789999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      ++++.................++++|.++.++++...  .+.|..+++. ++....+..  ........++++|+++.++
T Consensus       106 ~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~--~~~~~P~gia~d~~~~~ly  182 (267)
T 1npe_A          106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQ--DNLGLPNGLTFDAFSSQLC  182 (267)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEEC--TTCSCEEEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEE--CCCCCCcEEEEcCCCCEEE
Confidence            9986543222222222457899999933444444333  3678888875 333333321  1234678999998445556


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEe-ecCeEEEEcCCC
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS-VDNEIVLWEPKM  269 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~  269 (346)
                      ++-...+.|.++|+.....                       ..... .......++..++.++.+. ..+.|.++|..+
T Consensus       183 v~d~~~~~I~~~~~~g~~~-----------------------~~~~~-~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          183 WVDAGTHRAECLNPAQPGR-----------------------RKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             EEETTTTEEEEEETTEEEE-----------------------EEEEE-CCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCEEEEEecCCCce-----------------------EEEec-CCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence            6666678999999875211                       00111 1122344555555555554 568999999987


Q ss_pred             CCCCCCCccccccccccCCC-cCeeEEEEeecC
Q 019117          270 KEQSPGEGTADILQKYPVPE-CDIWFIKFSCDF  301 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~  301 (346)
                      ++         .+..+.... .....+++.|++
T Consensus       239 g~---------~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          239 SK---------EMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TE---------EEEEECCSSCCCCCCEEEECSC
T ss_pred             CC---------ceEEEccccccccceeeecCcc
Confidence            76         344443322 246778888876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=4.5e-08  Score=81.79  Aligned_cols=237  Identities=9%  Similarity=0.052  Sum_probs=138.4

Q ss_pred             cEEEEEcCC-cEEEEEeccCceeeeEeeeecCC----CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117           50 NVFATVGGN-RVTVYQCLEGGVIAALQSYVDED----KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF  124 (346)
Q Consensus        50 ~~la~~~~~-~v~i~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  124 (346)
                      ..+.+++.+ .|..+|..+++.+..........    ....+.. ...  .++. .++.++.++.|..+|..+++.+...
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVT--VSGG-HVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEE--EETT-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-Cce--EeCC-EEEEEcCCCEEEEEECCCCCEEEEE
Confidence            455555555 59999998888766554311000    0112221 112  2234 6888888999999999999988776


Q ss_pred             ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce------EEEEecCCCCcEEEEEecCCe
Q 019117          125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV------LSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~s~~~d~~  198 (346)
                      .............   +..++.++.++.|..+|..+++.+..+..    ...+      ......   +..++.++.++.
T Consensus       130 ~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~----~~~~~~~~~~~~~~~~---~~~v~~g~~~g~  199 (376)
T 3q7m_A          130 KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNL----DMPSLSLRGESAPTTA---FGAAVVGGDNGR  199 (376)
T ss_dssp             ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEEC----CC-----CCCCCCEEE---TTEEEECCTTTE
T ss_pred             eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeC----CCCceeecCCCCcEEE---CCEEEEEcCCCE
Confidence            6443322222232   34777788899999999999998888762    1121      112222   245777888999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCc
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG  277 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  277 (346)
                      +..+|..+++.............         .....+ ......    ...+..++.++.++.+..+|..+++      
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~---------~~~~~~~~~~~~p----~~~~~~v~~~~~~g~l~~~d~~tG~------  260 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGS---------TEIDRLSDVDTTP----VVVNGVVFALAYNGNLTALDLRSGQ------  260 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC--------------------CCCCCC----EEETTEEEEECTTSCEEEEETTTCC------
T ss_pred             EEEEECCCCcEEEEEecccCCCC---------cccccccccCCCc----EEECCEEEEEecCcEEEEEECCCCc------
Confidence            99999987543222111000000         000000 000111    1226788888889999999999886      


Q ss_pred             cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       278 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                         .+.....  .....+..  ++  ..+..++.++.|..+|..+++.+-.
T Consensus       261 ---~~w~~~~--~~~~~~~~--~~--~~l~~~~~~g~l~~~d~~tG~~~w~  302 (376)
T 3q7m_A          261 ---IMWKREL--GSVNDFIV--DG--NRIYLVDQNDRVMALTIDGGVTLWT  302 (376)
T ss_dssp             ---EEEEECC--CCEEEEEE--ET--TEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             ---EEeeccC--CCCCCceE--EC--CEEEEEcCCCeEEEEECCCCcEEEe
Confidence               2322221  12333333  33  4677778889999999999875443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=2.4e-07  Score=77.04  Aligned_cols=245  Identities=11%  Similarity=0.025  Sum_probs=135.8

Q ss_pred             CccEEEEEcC-Cc-EEEEEeccC-ceeeeEeeeec-CC--CccceEEEEEEEcCCCCcEEEEeecC------CeEEEEEc
Q 019117           48 YFNVFATVGG-NR-VTVYQCLEG-GVIAALQSYVD-ED--KEESFYTVSWACNVDGIPFLVAGGIN------GIIRVIDV  115 (346)
Q Consensus        48 ~~~~la~~~~-~~-v~i~~~~~~-~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~  115 (346)
                      ++++|...+. +. |.++|..+. ...+..+.... +.  ..+.-.-..+.+.|+|  +++++..+      |.|.++|.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence            4566655544 34 999998755 22222222110 00  0000112233445888  55555544      78999999


Q ss_pred             cCcceeeeeccCC---CceEEEEEeCCCCceEEEee-------------------CCCCEEEEecCCCeeEEEecccCCC
Q 019117          116 SNEKLHKSFVGHG---DSINEIRTQPLKPSLVVSAS-------------------KDESVRLWNVQTGICILIFAGAGGH  173 (346)
Q Consensus       116 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~  173 (346)
                      ++.+.+.++....   ..-..+.|+| +.+.+++..                   .+.+|.+||+.+++.+.++.... .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~  249 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E  249 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred             CCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence            9999988886322   2245688899 788888874                   36899999999998888887311 2


Q ss_pred             CcceEEEEe--cCCCCcEEEEEe------cCCeEEEEEccccceeeeeceeecCCCC--CCCCccceeceEEEeecccce
Q 019117          174 RNEVLSVDF--HPSDIYRIASCG------MDNTVKIWSMKEFWTYVEKSFTWTDLPS--KFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       174 ~~~v~~~~~--~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ......+.|  +| ++++++.+.      .+++|.+|............+.....+.  ..+.....     +..-....
T Consensus       250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~-----f~~~~~~p  323 (462)
T 2ece_A          250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP-----FKAVPPLV  323 (462)
T ss_dssp             EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG-----GTEECCCC
T ss_pred             CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc-----cccCCCce
Confidence            234556656  98 666666555      5678888777542211111111000000  00000000     00001234


Q ss_pred             EEEEec--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCC--------------CcCeeEEEEeecCCcceE
Q 019117          244 DCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP--------------ECDIWFIKFSCDFHYNAA  306 (346)
Q Consensus       244 ~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~~~l  306 (346)
                      ..+.++  +++|.++.. .+.|.+||+.....      ...+..+...              .+....+.++|||  ++|
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG--k~L  395 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG--RRV  395 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS--SEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC--CEE
Confidence            556666  777777765 78999999864321      1122222211              1135779999999  566


Q ss_pred             EEEc
Q 019117          307 AIGN  310 (346)
Q Consensus       307 ~~~~  310 (346)
                      +++.
T Consensus       396 yVaN  399 (462)
T 2ece_A          396 YVTN  399 (462)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.11  E-value=1.7e-09  Score=88.63  Aligned_cols=245  Identities=9%  Similarity=-0.055  Sum_probs=142.5

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      .+.++...+    ++. +..+..+ +..+|. +++....+..     .........+.   ++  .+..++.++.|..+|
T Consensus        61 ~~~~~~~~~----~g~-l~v~t~~-l~~~d~-~g~~~~~~~~-----~~~~~~~~~~~---~~--~l~v~t~~~~l~~~d  123 (330)
T 3hxj_A           61 IECRPSIGK----DGT-IYFGSDK-VYAINP-DGTEKWRFDT-----KKAIVSDFTIF---ED--ILYVTSMDGHLYAIN  123 (330)
T ss_dssp             EEECCEETT----TTE-ECCSSCE-EEEECC-CGGGGGGSCC----------CCEEEE---TT--EEEEECTTSEEEEEC
T ss_pred             cccceEEec----CCc-EEEecCc-EEEECC-CCcEEEEEEC-----CCCcccCceEE---CC--EEEEEecCCEEEEEc
Confidence            344555443    444 4445555 878874 5554333221     11111112222   34  577888889999999


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      .. ++.......+...+.++...+ ++ .++.++.++.|..+|.. ++.+..+.   .....+.++...+ ++.+++ ++
T Consensus       124 ~~-g~~~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~~~~d~-~g~l~v-~t  194 (330)
T 3hxj_A          124 TD-GTEKWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSAASIGK-DGTIYF-GS  194 (330)
T ss_dssp             TT-SCEEEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSCCEECT-TCCEEE-ES
T ss_pred             CC-CCEEEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-CCEeEEEe---cCCCceeeeEEcC-CCEEEE-Ee
Confidence            88 777766665555666677765 44 46667788999999998 88777766   3455667777765 666444 44


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQS  273 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~  273 (346)
                        +.|..+| .+..                       ...........+.++..+ ...+..++.++.|..+|... +  
T Consensus       195 --~~l~~~d-~~g~-----------------------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-~--  245 (330)
T 3hxj_A          195 --DKVYAIN-PDGT-----------------------EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-T--  245 (330)
T ss_dssp             --SSEEEEC-TTSC-----------------------EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS-C--
T ss_pred             --CEEEEEC-CCCc-----------------------EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC-C--
Confidence              7889998 4422                       122222233445566666 33677777788888887533 2  


Q ss_pred             CCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee-EEEEEecCCCC
Q 019117          274 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF-SLHVKYNPQSV  345 (346)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~spdg~  345 (346)
                             .+..+......+..+.+.+++   .|..++.+|.|..+|. +++.......... +.++...++|+
T Consensus       246 -------~~~~~~~~~~~~~~~~~~~~g---~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          246 -------EKWRFKTGKRIESSPVIGNTD---TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT  307 (330)
T ss_dssp             -------EEEEEECSSCCCSCCEECTTS---CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred             -------EeEEeeCCCCccccceEcCCC---eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence                   222333222233344555454   5777888888999995 6665544444322 33444445543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.11  E-value=2.9e-08  Score=89.32  Aligned_cols=214  Identities=13%  Similarity=0.116  Sum_probs=128.7

Q ss_pred             EEEEEeccCceeeeEeeeecCCC-------------------------ccceEEEEEEEcCCCCcEEEEeecCCe-----
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDK-------------------------EESFYTVSWACNVDGIPFLVAGGINGI-----  109 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~~~~l~~~~~dg~-----  109 (346)
                      |..||..+++.+..+........                         ...++ ...++++++. +++.+..++.     
T Consensus       185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w-~~~~~d~~~~-~vy~~~~~g~~w~~~  262 (689)
T 1yiq_A          185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAW-DSFAYDPELN-LLYIGVGNGSLWDPK  262 (689)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCC-SCEEEETTTT-EEEEECCCEESSCHH
T ss_pred             EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccc-cceeEcCCCC-EEEEeCCCCCccccC
Confidence            99999999998776653110000                         00111 1234457777 7888877763     


Q ss_pred             --------------EEEEEccCcceeeeecc--CC-------CceEEEEEeCCCCc---eEEEeeCCCCEEEEecCCCee
Q 019117          110 --------------IRVIDVSNEKLHKSFVG--HG-------DSINEIRTQPLKPS---LVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus       110 --------------i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~  163 (346)
                                    |..+|.++++.+..++.  |.       .++....... ++.   .++.++.+|.++++|.++|+.
T Consensus       263 ~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          263 WRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                          99999999999887764  21       1222222222 343   788999999999999999998


Q ss_pred             EEEecccC-------------------------CCCc-----------ceEEEEecCCCCcEEEEEec------------
Q 019117          164 ILIFAGAG-------------------------GHRN-----------EVLSVDFHPSDIYRIASCGM------------  195 (346)
Q Consensus       164 ~~~~~~~~-------------------------~~~~-----------~v~~~~~~~~~~~~l~s~~~------------  195 (346)
                      +.......                         ....           .-..++++| +..++++...            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecccc
Confidence            85443110                         0000           011267888 6566666533            


Q ss_pred             ---------------------------------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          196 ---------------------------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       196 ---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                                                       +|.|..||+.+.+                       .+.....+...
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-----------------------~~W~~~~~~~~  477 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-----------------------AAWEVPYVTIF  477 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE-----------------------EEEEEEESSSC
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC-----------------------eEeEccCCCCc
Confidence                                             2556777776632                       23333333221


Q ss_pred             eE-EEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC-eeEEEEeecCCcceEEEEc
Q 019117          243 VD-CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD-IWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       243 i~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~l~~~~  310 (346)
                      .. .+.-.+.+++.++.|+.++.||.++++         .+.++..+.+. ..-+.|..+|+ .++++.+
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~---------~lw~~~~~~~~~~~p~ty~~~G~-qyv~~~~  537 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGE---------KLWEQPAASGVMAAPVTYSVDGE-QYVTFMA  537 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCC---------EEEEEECSSCCCSCCEEEEETTE-EEEEEEE
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCc---------cceeeeCCCCcccCceEEEECCE-EEEEEEe
Confidence            11 222238899999999999999999998         55555543222 23467788885 4665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=4.2e-08  Score=75.59  Aligned_cols=196  Identities=16%  Similarity=0.178  Sum_probs=115.6

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCC--eEEEEEccCcceeeeeccCCCc-eEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDESVRLWNV  158 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~iwd~  158 (346)
                      |+..-..-.+.++ ++. ++.+.+.+|  .|+++|+++++.+..+.-.... -..++..  ++.+.+..-.++.+.++|.
T Consensus        39 hd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           39 HDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             CCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             CCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            3333322333444 565 777777766  8999999999988887643322 1335554  3455556667899999999


Q ss_pred             CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      .+.+.+.++..    ...-..+++   ++..|+.+..++.|.++|..+++.....                     ....
T Consensus       115 ~t~~~~~ti~~----~~eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I---------------------~V~~  166 (262)
T 3nol_A          115 RNLRQVRSFNY----DGEGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTI---------------------TVTA  166 (262)
T ss_dssp             TTCCEEEEEEC----SSCCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEE---------------------ECEE
T ss_pred             ccCcEEEEEEC----CCCceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEE---------------------Eecc
Confidence            99999999973    222234443   3444555455788999999884421111                     1111


Q ss_pred             cc---cceEEEEecCCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEEEEeecCCcceEEEEc
Q 019117          239 HS---NYVDCNRWLGDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       239 ~~---~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      ..   ..+..+.|.+..+.+.. .++.|.+.|..+++.........+....   .........|+|+|+++ +++++|-
T Consensus       167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~-~lfVTGK  244 (262)
T 3nol_A          167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH-RLFVTGK  244 (262)
T ss_dssp             TTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT-EEEEEET
T ss_pred             CCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC-EEEEECC
Confidence            11   23344566533444444 5889999999998732211111111110   11124568899999885 4556553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.10  E-value=1.1e-08  Score=83.67  Aligned_cols=216  Identities=13%  Similarity=0.028  Sum_probs=133.4

Q ss_pred             EEEEEc-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           51 VFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        51 ~la~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .+..++ .+++..+|.. ++.......     ....+..+..  .+++.  +..++.++.|..+|.. ++....+.....
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~--~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~  177 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKT-----KKAIYATPIV--SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDA  177 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEE--CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcC-----CCceeeeeEE--cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence            344454 4459999976 665444332     1222222322  35665  6667778999999988 877776665566


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                      .+.++...+ ++.++ .++  +.|..+| .+++.+..+.   .....+.++...+ ++. +..++.++.|..+|... . 
T Consensus       178 ~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~g-~-  245 (330)
T 3hxj_A          178 ITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPDG-T-  245 (330)
T ss_dssp             CCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECT-TSC-EEEEETTTEEEEECTTS-C-
T ss_pred             ceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc---cCCcceeceEECC-CCe-EEEEcCCCeEEEECCCC-C-
Confidence            677777766 55544 444  7899999 7777777665   3446678888886 555 55566778888887533 1 


Q ss_pred             eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  288 (346)
                                            .+.........+.++... +..|..++.++.|..+|. +++         .+..+...
T Consensus       246 ----------------------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~---------~~~~~~~~  293 (330)
T 3hxj_A          246 ----------------------EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT---------EKWNFETG  293 (330)
T ss_dssp             ----------------------EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC---------EEEEEECS
T ss_pred             ----------------------EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc---------EEEEEEcC
Confidence                                  111222222222233334 567888888889999996 444         23333334


Q ss_pred             CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ...+.++...+++   .|..++.+|.+++...+..+
T Consensus       294 ~~~~~~~~~d~~g---~l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          294 SWIIATPVIDENG---TIYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             SCCCSCCEECTTC---CEEEECTTSCEEEEEC----
T ss_pred             CccccceEEcCCC---EEEEEcCCCeEEEEeccccc
Confidence            4556667776776   47778999999998776543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.08  E-value=5.1e-08  Score=75.11  Aligned_cols=182  Identities=9%  Similarity=0.024  Sum_probs=122.4

Q ss_pred             ceeeeeccCCC--ceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCeeEEEecccCCCCcce--EEEEecCCCCcEEEE
Q 019117          119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIAS  192 (346)
Q Consensus       119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s  192 (346)
                      +.+.+++ |..  ....+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+..    ....  -.++..  +..+.+.
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~l  102 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGL  102 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEE
T ss_pred             EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEE
Confidence            3455664 543  34788888  457777777766  899999999999988862    2233  345554  4555555


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  272 (346)
                      .-.++.+.+||..+.+                       .+.++.... .-..+++.++.|+.+..++.|.++|..+.+ 
T Consensus       103 tw~~~~v~v~D~~t~~-----------------------~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-  157 (262)
T 3nol_A          103 TWKNGLGFVWNIRNLR-----------------------QVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-  157 (262)
T ss_dssp             ESSSSEEEEEETTTCC-----------------------EEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCS-
T ss_pred             EeeCCEEEEEECccCc-----------------------EEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCe-
Confidence            5668899999998843                       233333222 223555667766666668899999999876 


Q ss_pred             CCCCccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-------------ee
Q 019117          273 SPGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-------------CF  334 (346)
Q Consensus       273 ~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~  334 (346)
                              .+.++...     -..+..+.|. ++  .+.+..-.++.|.+.|.++++.+..+.+.             ..
T Consensus       158 --------v~~~I~V~~~g~~~~~lNELe~~-~G--~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v  226 (262)
T 3nol_A          158 --------PVRTITVTAHGEELPELNELEWV-DG--EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV  226 (262)
T ss_dssp             --------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred             --------EEEEEEeccCCccccccceeEEE-CC--EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence                    33333321     1334557776 66  56677767889999999999977766653             13


Q ss_pred             EEEEEecCCCC
Q 019117          335 SLHVKYNPQSV  345 (346)
Q Consensus       335 ~~~~~~spdg~  345 (346)
                      .+.|+|+|+++
T Consensus       227 lNGIA~dp~~~  237 (262)
T 3nol_A          227 LNGIAWDKEHH  237 (262)
T ss_dssp             EEEEEEETTTT
T ss_pred             eEEEEEcCCCC
Confidence            57899999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.04  E-value=1.9e-06  Score=72.03  Aligned_cols=235  Identities=9%  Similarity=-0.062  Sum_probs=140.4

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .+|+.+....|+.+++........+.      .......++|.  +.+..++++-...+.|..++++.......+.....
T Consensus        88 ~~l~~~~~~~I~~i~~~~~~~~~~~~------~~~~~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~  159 (386)
T 3v65_B           88 PVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE  159 (386)
T ss_dssp             CEEEEECBSCEEEECTTSCCCEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred             ceeEeecCccceeeccCCCcEEEEec------CCCccEEEEEe--cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence            45556666668888876544433332      22334456555  65552555656678999999876654443433334


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEccccc
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFW  208 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~  208 (346)
                      ....+++.+.++.++++-...+.|.+.++........+.   ........++++|.++.++++-... +.|..+++....
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            557888887456666676677889998886443333332   2345678999998556666665555 678888876511


Q ss_pred             eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccc
Q 019117          209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                             ........-.....|+++  +. +.++-...+.|..+|+.....         ...+
T Consensus       237 -----------------------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~  284 (386)
T 3v65_B          237 -----------------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVI  284 (386)
T ss_dssp             -----------------------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEE
T ss_pred             -----------------------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEE
Confidence                                   011111112335667776  44 445555678899999875331         1111


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      .........+++ ..+  .++.+-...+.|..++..+++....+.
T Consensus       285 ~~~~~~P~giav-~~~--~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          285 SQGLPHPFAITV-FED--SLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             CSSCSSEEEEEE-ETT--EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCCCCceEEEE-ECC--EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            112335677788 333  467777788899999977776555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=1.8e-07  Score=72.03  Aligned_cols=183  Identities=7%  Similarity=-0.065  Sum_probs=126.0

Q ss_pred             ceeeeeccCCC--ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC
Q 019117          119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD  196 (346)
Q Consensus       119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  196 (346)
                      +.+.+++ |..  ....+.|+  ++.++.+.+.+|.|+++|+.+++.+..+ .  .....--.+++.  +..+.+..-.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~--g~~Ly~ltw~~  115 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASD--GERLYQLTWTE  115 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEEC--SSCEEEEESSS
T ss_pred             EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEe--CCEEEEEEccC
Confidence            4455564 433  34788887  4678888888999999999999988877 2  222222346665  45666666678


Q ss_pred             CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                      +.+.+||..+++                       .+.++... ..-..+++.++.|+.+..++.|.++|..+.+     
T Consensus       116 ~~v~V~D~~Tl~-----------------------~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~-----  166 (268)
T 3nok_A          116 GLLFTWSGMPPQ-----------------------RERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA-----  166 (268)
T ss_dssp             CEEEEEETTTTE-----------------------EEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCC-----
T ss_pred             CEEEEEECCcCc-----------------------EEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCe-----
Confidence            999999999843                       23333322 2224566678877777779999999999876     


Q ss_pred             ccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--------------eEEE
Q 019117          277 GTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--------------FSLH  337 (346)
Q Consensus       277 ~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~  337 (346)
                          .+.++...     -..+..+.|. ++  .+.+..-.++.|.+.|.++++.+..+.+.+              ..+.
T Consensus       167 ----v~~~I~V~~~g~~v~~lNeLe~~-dG--~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNG  239 (268)
T 3nok_A          167 ----LVGAVQVKLRGQPVELINELECA-NG--VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNG  239 (268)
T ss_dssp             ----EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEE
T ss_pred             ----EEEEEEeCCCCcccccccccEEe-CC--EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEE
Confidence                33333321     1244667776 66  566777678899999999999877776542              3578


Q ss_pred             EEecCCCC
Q 019117          338 VKYNPQSV  345 (346)
Q Consensus       338 ~~~spdg~  345 (346)
                      |+|+|+++
T Consensus       240 IA~dp~~~  247 (268)
T 3nok_A          240 IAVEPGSG  247 (268)
T ss_dssp             EEECTTTC
T ss_pred             EEEcCCCC
Confidence            99999865

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=1.7e-07  Score=72.26  Aligned_cols=181  Identities=9%  Similarity=0.026  Sum_probs=112.9

Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCC-ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                      +. ++.+.+.+|.|+++|+++++.+..+ -... .-..+++.  ++.+.+..-.++.+.++|..+.+.+.++..    ..
T Consensus        65 ~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~----~~  136 (268)
T 3nok_A           65 GH-FFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRY----SG  136 (268)
T ss_dssp             TE-EEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEEC----SS
T ss_pred             CE-EEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeC----CC
Confidence            44 7888888899999999999988777 2222 12345554  455666666789999999999999999973    23


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc---cceEEEEecCCE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---NYVDCNRWLGDF  252 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~  252 (346)
                      .-..+++   ++..|+.+..++.|.++|..+++.....                     ....+.   ..+..+.|.+..
T Consensus       137 eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I---------------------~V~~~g~~v~~lNeLe~~dG~  192 (268)
T 3nok_A          137 EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAV---------------------QVKLRGQPVELINELECANGV  192 (268)
T ss_dssp             CCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEE---------------------ECEETTEECCCEEEEEEETTE
T ss_pred             ceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEE---------------------EeCCCCcccccccccEEeCCE
Confidence            3345554   3445555556889999999884421111                     111122   234556666334


Q ss_pred             EEEEe-ecCeEEEEcCCCCCCCCCCcccccccc----ccCCCcCeeEEEEeecCCcceEEEEc
Q 019117          253 ILSKS-VDNEIVLWEPKMKEQSPGEGTADILQK----YPVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       253 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                      |.+.. .++.|.+.|..+++.........+...    ..........|+++|+++ +++++|-
T Consensus       193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-rlfVTGK  254 (268)
T 3nok_A          193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-RIFMTGK  254 (268)
T ss_dssp             EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-CEEEEET
T ss_pred             EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-EEEEeCC
Confidence            54444 578999999999873221111111110    011224678899999885 5666663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.02  E-value=2.7e-07  Score=70.48  Aligned_cols=190  Identities=9%  Similarity=0.042  Sum_probs=114.7

Q ss_pred             eEEEEEEEcCCCCcEEEEeecC--CeEEEEEccCcceeeeeccCCCc-eEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117           86 FYTVSWACNVDGIPFLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  162 (346)
                      ...+.|.  . +. ++.+.+.+  ..|+.+|+.+++.+..+.-.... -..+++.  ++.+....-.++.+.++|..+.+
T Consensus        23 tqGL~~~--~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           23 TEGLFYL--R-GH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEEEEE--T-TE-EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccEEEE--C-CE-EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            3445553  4 44 66666665  48999999999988877643321 2344554  45566666778999999999999


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--  240 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  240 (346)
                      .+.++..    ...-..++..  ++.++++ ..++.|.++|..+++.....                     ....+.  
T Consensus        97 ~~~ti~~----~~~Gwglt~d--g~~L~vS-dgs~~l~~iDp~t~~~~~~I---------------------~V~~~g~~  148 (243)
T 3mbr_X           97 PRARFRY----PGEGWALTSD--DSHLYMS-DGTAVIRKLDPDTLQQVGSI---------------------KVTAGGRP  148 (243)
T ss_dssp             EEEEEEC----SSCCCEEEEC--SSCEEEE-CSSSEEEEECTTTCCEEEEE---------------------ECEETTEE
T ss_pred             EEEEEeC----CCCceEEeeC--CCEEEEE-CCCCeEEEEeCCCCeEEEEE---------------------EEccCCcc
Confidence            9999973    2333455532  4454454 55889999999884421111                     111111  


Q ss_pred             -cceEEEEecCCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccc----cCCCcCeeEEEEeecCCcceEEEEc
Q 019117          241 -NYVDCNRWLGDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGN  310 (346)
Q Consensus       241 -~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~~l~~~~  310 (346)
                       ..+..+.+.+..+.+.. .+..|.+.|..+++.........+....    .......+.|+++|+++ +++++|-
T Consensus       149 ~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~lfVTGK  223 (243)
T 3mbr_X          149 LDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD-RLFVTGK  223 (243)
T ss_dssp             CCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT-EEEEEET
T ss_pred             cccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC-EEEEECC
Confidence             23455666644444444 5789999999998742211111111111    11224678899999885 5666664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=2.3e-07  Score=79.97  Aligned_cols=261  Identities=7%  Similarity=0.043  Sum_probs=154.4

Q ss_pred             EEEEcCCc-EEEEEeccCceeeeEeeeecCC----------------------------C------ccceEEEEEEE---
Q 019117           52 FATVGGNR-VTVYQCLEGGVIAALQSYVDED----------------------------K------EESFYTVSWAC---   93 (346)
Q Consensus        52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~----------------------------~------~~~v~~~~~~~---   93 (346)
                      |.+|+..+ ++|+-+-+++.++.+..|....                            +      .+......+++   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            45555555 8999888888887777654311                            0      11122244443   


Q ss_pred             cCCCCcEEEEeecCCeEEEEEccCcceeeeecc-CCCceEEEEE-e-CCCCceEEEee------------------CCCC
Q 019117           94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRT-Q-PLKPSLVVSAS------------------KDES  152 (346)
Q Consensus        94 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~s~~------------------~d~~  152 (346)
                      .+||+.+++....++.|.+.|+++.+..+.+.- .......+++ . | ++.++++++                  .++.
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCce
Confidence            247883444445567899999999997774432 2345788887 4 8 677777764                  3457


Q ss_pred             EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC---------------CeEEEEEccccceeeeec-ee
Q 019117          153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKS-FT  216 (346)
Q Consensus       153 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~-~~  216 (346)
                      +.+.|..+.+....+..    .+....++++| ++.++++.+.+               ..|.+.|........... ..
T Consensus       177 vtvID~~t~~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEEEECCCCeEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            99999999998888862    23567788999 77777777655               347777776532211000 00


Q ss_pred             ecCCCCCCCCccc-eec-eEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCC---CCCCccccccccccCC
Q 019117          217 WTDLPSKFPTKYV-QFP-VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQ---SPGEGTADILQKYPVP  288 (346)
Q Consensus       217 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~  288 (346)
                      +...-.-...... ... +..+.. .....++.++  |+++++++ .+.+|.++|+.+.+.   .............. -
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v  329 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L  329 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred             EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence            0000000000000 011 112221 2234456666  77666555 589999999986521   00011111222222 2


Q ss_pred             CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      ......++|+++|  ...++.-.|+.|.+||+.+
T Consensus       330 G~gP~h~aF~~dG--~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GLGPLHTAFDGRG--NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CSCEEEEEECTTS--EEEEEETTTTEEEEEEHHH
T ss_pred             CCCcceEEECCCC--eEEEEEecCCcEEEEEhhH
Confidence            3467889999999  5777888999999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.00  E-value=5e-08  Score=83.94  Aligned_cols=259  Identities=11%  Similarity=0.045  Sum_probs=151.0

Q ss_pred             CccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------------------cC
Q 019117           48 YFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------------------IN  107 (346)
Q Consensus        48 ~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------------------~d  107 (346)
                      ||+++..+..++  |.+.|+.+.+..+.+...    .......+++.--|+++ ++++++                  .+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip----~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP----NAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS----SCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC----CCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccC
Confidence            566666666554  999999998887766321    22344445543127888 777763                  34


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC------------------------------------
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------------------------------------  151 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------------------------------------  151 (346)
                      +.+.+.|.++.+....+.--. ....++++| ++.++++.+.+.                                    
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             ceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            689999999988888776322 456788999 677777776443                                    


Q ss_pred             --CEEEEecCC--Cee-EEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117          152 --SVRLWNVQT--GIC-ILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  225 (346)
Q Consensus       152 --~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (346)
                        .|.+.|.++  ++. +..+.    -.....++.++| +++++ +++..+.+|.++|+.+.+.......          
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l----------  317 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENA----------  317 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC----------
T ss_pred             ECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECccccccccccc----------
Confidence              367777776  444 44443    334567899999 66555 4555678999999997431100000          


Q ss_pred             CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC-CCccccccccccCCCcC-----eeEEEE
Q 019117          226 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP-GEGTADILQKYPVPECD-----IWFIKF  297 (346)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~-----v~~~~~  297 (346)
                        .....+.....-......++|+  |...++.-.|+.|.+||+....... .......+.++..|-.+     -..+.+
T Consensus       318 --~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          318 --DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             --CGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred             --CcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence              0001111111122345667777  6333445569999999987621000 00011244444444321     122356


Q ss_pred             eecCCcceEEEEc---CCCc----------EEEEEcCCCCcceeeeee
Q 019117          298 SCDFHYNAAAIGN---REGK----------IFVWELQSSPPVLIARLI  332 (346)
Q Consensus       298 s~~~~~~~l~~~~---~dg~----------i~iwd~~~~~~~~~~~~~  332 (346)
                      +|||  ++|++..   .|..          -.++|+.+++........
T Consensus       396 ~~DG--k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p  441 (595)
T 1fwx_A          396 DATN--DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP  441 (595)
T ss_dssp             TCCS--SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred             CCCC--CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEc
Confidence            7899  5666653   2432          188999777655544433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.99  E-value=3.1e-07  Score=82.58  Aligned_cols=225  Identities=12%  Similarity=0.110  Sum_probs=136.8

Q ss_pred             EEEEEeccCceeeeEeeeecCC--------------------------CccceEEEEEEEcCCCCcEEEEeecCC-----
Q 019117           60 VTVYQCLEGGVIAALQSYVDED--------------------------KEESFYTVSWACNVDGIPFLVAGGING-----  108 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg-----  108 (346)
                      |+.||..+++.+..+.......                          ....+. ...++++++. .++.+..++     
T Consensus       192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w-~~~~~d~~~~-~vy~~~~~~~~w~~  269 (677)
T 1kb0_A          192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMW-DSMTFDAELN-TMYVGTGNGSPWSH  269 (677)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCC-SCEEEETTTT-EEEEECCCEESSCH
T ss_pred             EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccc-cceeEcCCCC-EEEEECCCCccccC
Confidence            9999999999877665422110                          000000 1234457777 777776553     


Q ss_pred             --------------eEEEEEccCcceeeeecc--CC-------CceEEEEEeCCCC---ceEEEeeCCCCEEEEecCCCe
Q 019117          109 --------------IIRVIDVSNEKLHKSFVG--HG-------DSINEIRTQPLKP---SLVVSASKDESVRLWNVQTGI  162 (346)
Q Consensus       109 --------------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~  162 (346)
                                    .|..+|.++++.+..++.  |.       .....+.... ++   ..++.++.+|.|.++|..+|+
T Consensus       270 ~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          270 KVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCC
Confidence                          599999999998887653  21       1222333333 45   688999999999999999999


Q ss_pred             eEEEecccCC--------CCcce------------------------EEEEecCCCCcEEEEEecC--------------
Q 019117          163 CILIFAGAGG--------HRNEV------------------------LSVDFHPSDIYRIASCGMD--------------  196 (346)
Q Consensus       163 ~~~~~~~~~~--------~~~~v------------------------~~~~~~~~~~~~l~s~~~d--------------  196 (346)
                      .+..+.....        ...++                        ..++++| +..++++...+              
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeecccccccc
Confidence            9877652100        00011                        1567888 66666665432              


Q ss_pred             -----------------------------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE--
Q 019117          197 -----------------------------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC--  245 (346)
Q Consensus       197 -----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--  245 (346)
                                                   |.|..||+.+.+.                       +..... ...+..  
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-----------------------~W~~~~-~~~~~~g~  483 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-----------------------AWSVEH-VSPWNGGT  483 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-----------------------EEEEEE-SSSCCCCE
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-----------------------EeecCC-CCCCcCcc
Confidence                                         5677777776332                       222221 111221  


Q ss_pred             EEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcC-------------
Q 019117          246 NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNR-------------  311 (346)
Q Consensus       246 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~-------------  311 (346)
                      +...+.+++.++.|+.+++||..+++         .+..+.... ....-+.+..+++ .++++.+.             
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~---------~lw~~~~~~~~~~~p~~y~~~G~-~~v~~~~G~~~~~~~~~~~~~  553 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGE---------KLWEAPTGTGVVAAPSTYMVDGR-QYVSVAVGWGGVYGLAARATE  553 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCC---------EEEEEECSSCCCSCCEEEEETTE-EEEEEEECCCHHHHHHCCSCS
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCc---------eeeeeeCCCCcccCCEEEEeCCE-EEEEEeccCCccccccccccc
Confidence            22237788889999999999999988         555554332 2223456778885 35554322             


Q ss_pred             ---CCcEEEEEcCC
Q 019117          312 ---EGKIFVWELQS  322 (346)
Q Consensus       312 ---dg~i~iwd~~~  322 (346)
                         .+.+..|.+..
T Consensus       554 ~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          554 RQGPGTVYTFVVGG  567 (677)
T ss_dssp             CCCCCEEEEEEETC
T ss_pred             cCCCCeEEEEeccc
Confidence               36777777763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.98  E-value=3.8e-07  Score=69.71  Aligned_cols=182  Identities=10%  Similarity=-0.039  Sum_probs=121.0

Q ss_pred             ceeeeeccCC--CceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCeeEEEecccCCCCcce--EEEEecCCCCcEEEE
Q 019117          119 KLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIAS  192 (346)
Q Consensus       119 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s  192 (346)
                      +.+.+++ |.  .....+.|++  +.++.+.+.+|  .|+.+|+.+++.+..+..    ....  -.+++.  ++.++..
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~l   80 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQL   80 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEE
T ss_pred             EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEE
Confidence            3455554 54  4566899986  56677777654  899999999999988863    2222  345554  4566666


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  272 (346)
                      .-.++.+.+||..+++                       .+.++.... .-..++..++.|+.+..++.|.++|..+.+ 
T Consensus        81 tw~~~~v~v~D~~tl~-----------------------~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~-  135 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLT-----------------------PRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQ-  135 (243)
T ss_dssp             ESSSSEEEEEETTTTE-----------------------EEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCC-
T ss_pred             EeeCCEEEEEECCcCc-----------------------EEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCe-
Confidence            6678999999998843                       233333222 224566666666666668999999999876 


Q ss_pred             CCCCccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--------------
Q 019117          273 SPGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--------------  333 (346)
Q Consensus       273 ~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------  333 (346)
                              .+.++...     -..+..+.+. ++  .+.+..-.+..|.+.|.++++.+..+.+.+              
T Consensus       136 --------~~~~I~V~~~g~~~~~lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          136 --------QVGSIKVTAGGRPLDNLNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             --------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred             --------EEEEEEEccCCcccccceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence                    33333321     1244556655 55  566666678899999999999777666442              


Q ss_pred             eEEEEEecCCCC
Q 019117          334 FSLHVKYNPQSV  345 (346)
Q Consensus       334 ~~~~~~~spdg~  345 (346)
                      ..+.|+|+|+++
T Consensus       205 vlNGIA~d~~~~  216 (243)
T 3mbr_X          205 VLNGIAFDAEHD  216 (243)
T ss_dssp             CEEEEEEETTTT
T ss_pred             ceEEEEEcCCCC
Confidence            357899999764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.96  E-value=7.4e-06  Score=67.42  Aligned_cols=246  Identities=8%  Similarity=-0.084  Sum_probs=143.8

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .+...|.+..+     ..+|+.+....|+..++........+.      .......++|.  +.+..++++-...+.|..
T Consensus        33 ~d~~~C~~~~~-----~~~ll~~~~~~I~~i~~~g~~~~~~~~------~~~~~~~l~~d--~~~~~ly~~D~~~~~I~r   99 (349)
T 3v64_C           33 PDRRSCKALGP-----EPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFH--HRRELVFWSDVTLDRILR   99 (349)
T ss_dssp             TTSSCEEESSS-----CCEEEEECBSCEEEECTTSCCEEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred             CCCCccccccc-----CceeEeecccceEEEeCCCCeeEEeec------CCCceEEEEEe--ccccEEEEEeccCCceEE
Confidence            34445655443     245555555668887765443322222      22234455555  655525555556789999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      ++++.......+.........+++.+.++.++++-...+.|.+.++........+.   ........++++|.++.++++
T Consensus       100 ~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          100 ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---TTCSCEEEEEEETTTTEEEEE
T ss_pred             EecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe---CCCCCcceEEEecCcCeEEEe
Confidence            99876654443333334567889987456666776777889999987443333332   234567899999856666666


Q ss_pred             EecC-CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCC
Q 019117          193 CGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK  268 (346)
Q Consensus       193 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~  268 (346)
                      -... +.|..+++.....                       .......-.....++++  ++.| ++-...+.|..+|+.
T Consensus       177 d~~~~~~I~r~~~dG~~~-----------------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSGR-----------------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             ECSSSCEEEEEETTSCSC-----------------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCEEEEEeCCCCCc-----------------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            5555 7888888765111                       00001112234567776  4444 444556789999987


Q ss_pred             CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      ....         ...+.........+++ .++  .++.+-...+.|..++..+++....+
T Consensus       234 G~~~---------~~~~~~~~~~P~giav-~~~--~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          234 GSHR---------KAVISQGLPHPFAITV-FED--SLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             SCSC---------EEEECSSCSSEEEEEE-ETT--EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCce---------EEEEeCCCCCceEEEE-ECC--EEEEecCCCCeEEEEEccCCCccEEe
Confidence            5431         1111112335667787 344  56677777888999987677655444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=1.8e-07  Score=84.04  Aligned_cols=153  Identities=12%  Similarity=0.073  Sum_probs=95.4

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeEEEEEccCcceee
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK  122 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~  122 (346)
                      ..++.++.++ |..+|..+++.+......... ....+...-..  .++  .++++..      +|.|..+|..+++.+.
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v--~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRV--VKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEE--ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEE--ECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence            4555666555 999999999987776532110 00111100001  134  4555543      5899999999999887


Q ss_pred             eeccCC-------------------------------CceEEEEEeCCCCceEEEeeCCC-------------------C
Q 019117          123 SFVGHG-------------------------------DSINEIRTQPLKPSLVVSASKDE-------------------S  152 (346)
Q Consensus       123 ~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~d~-------------------~  152 (346)
                      .+....                               .....+++.| ...+++.++.++                   .
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~  271 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            764210                               0112467888 667787777665                   3


Q ss_pred             EEEEecCCCeeEEEecccCCCC-------cceEEEEecCCCCc---EEEEEecCCeEEEEEcccccee
Q 019117          153 VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKEFWTY  210 (346)
Q Consensus       153 i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~  210 (346)
                      |..+|.++++.+..++.. .|.       .++....+.. ++.   .++.++.+|.+.++|..+++..
T Consensus       272 v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            999999999999888742 121       2222222222 443   6889999999999999886654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.89  E-value=1.7e-05  Score=73.00  Aligned_cols=272  Identities=7%  Similarity=0.005  Sum_probs=155.4

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV  115 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  115 (346)
                      |.++...+    ++.+.+....+++..|+..+++......    ......|.++...  ++|.  |..|+.++-+.+||.
T Consensus       175 i~~i~~d~----~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d--~~g~--lwigt~~~Gl~~~~~  242 (795)
T 4a2l_A          175 IASTLYRQ----GDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQ--SPTR--IWVATEGAGLFLINP  242 (795)
T ss_dssp             CEEEEEEE----TTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEE--ETTE--EEEEEBSSCEEEEET
T ss_pred             eEEEEECC----CCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEc--CCCC--EEEEECCCCeEEEeC
Confidence            88888776    5677765545679999976654322111    1123456555543  6665  555554545889998


Q ss_pred             cCcceeeeecc-------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc----CCCCcceEEEEecC
Q 019117          116 SNEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHP  184 (346)
Q Consensus       116 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~  184 (346)
                      .+++.......       ....|.++...+ ++. |..|+.+ -|.+||..+++........    .-....|.++...+
T Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~  319 (795)
T 4a2l_A          243 KTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS  319 (795)
T ss_dssp             TTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT
T ss_pred             CCCeEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC
Confidence            77654332211       235689998887 554 4445555 5899998877644332110    11346799999986


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIV  263 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~  263 (346)
                       ++. |..|+.++-|..|+.....-.....     ...            ........|.++..+ ...|..|+.++-|.
T Consensus       320 -~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----~~~------------~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~  380 (795)
T 4a2l_A          320 -QGG-MWLGTYFGGLNYYHPIRNRFKNIRN-----IPY------------KNSLSDNVVSCIVEDKDKNLWIGTNDGGLN  380 (795)
T ss_dssp             -TSC-EEEEESSSCEEEECGGGGSSEEECC-----CTT------------SSSCSCSSEEEEEECTTSCEEEEESSSCEE
T ss_pred             -CcC-EEEEECCCCeEEeCCCcccceEEcC-----CCC------------CCCCCCCeeEEEEECCCCCEEEEECCCCeE
Confidence             665 5556777778888876521100000     000            001123457788777 45677788888899


Q ss_pred             EEcCCCCCCCCCCccccccccc-cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-----eeeeEEE
Q 019117          264 LWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-----LICFSLH  337 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~  337 (346)
                      .|+..+++........  .... ......|.++...+++  .+|..|+.++-|..||..+++......     ....+.+
T Consensus       381 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~  456 (795)
T 4a2l_A          381 LYNPITQRFTSYTLQE--DESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYA  456 (795)
T ss_dssp             EECTTTCCEEEECCC--------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEE
T ss_pred             EEcCCCCcEEEEecCC--CCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEE
Confidence            9998765421000000  0000 1123568888877776  436677777779999988875332211     1234666


Q ss_pred             EEecCCCC
Q 019117          338 VKYNPQSV  345 (346)
Q Consensus       338 ~~~spdg~  345 (346)
                      +...++|+
T Consensus       457 i~~d~~g~  464 (795)
T 4a2l_A          457 ILPDGEGN  464 (795)
T ss_dssp             EEECSSSC
T ss_pred             EEECCCCC
Confidence            66666654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=1.5e-05  Score=64.73  Aligned_cols=234  Identities=6%  Similarity=-0.053  Sum_probs=136.9

Q ss_pred             EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----cceeeeecc
Q 019117           51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVG  126 (346)
Q Consensus        51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~  126 (346)
                      +|+.+..+.|+..++........+.      .......++|.  +.+..++++-..++.|..+++..    ......+..
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~------~~~~p~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC------SCSSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcceEehhc------CCCceEEEEEE--eCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence            5666666779999987765544433      22334455555  65552555666678999999876    222222332


Q ss_pred             CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEcc
Q 019117          127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK  205 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~  205 (346)
                      .-.....+++.+.++.++++-...+.|.+.++........+.   ........++++|.++.++++.... +.|...++.
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence            234567889986455666666778899999987443332332   2345678999998455555554333 678888876


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEEec--CCEEE-EEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      ...                        ...+ ...-.....++++  ++.|. +-...+.|..+|++....       ..
T Consensus       152 G~~------------------------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~  200 (316)
T 1ijq_A          152 GVD------------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KT  200 (316)
T ss_dssp             SCC------------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EE
T ss_pred             CCC------------------------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EE
Confidence            411                        1111 1122345677776  44554 444567899999875331       11


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      +............+++. .+  .++.+-...+.|..++..+++.+..+
T Consensus       201 ~~~~~~~~~~P~giav~-~~--~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          201 ILEDEKRLAHPFSLAVF-ED--KVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEECTTTTSSEEEEEEE-TT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EeecCCccCCcEEEEEE-CC--EEEEEECCCCeEEEEeCCCCcceEEE
Confidence            11111112345677774 33  56677777889999998777654443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.84  E-value=2.4e-06  Score=75.21  Aligned_cols=154  Identities=12%  Similarity=0.100  Sum_probs=90.2

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeEEEEEccCcceee
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK  122 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~  122 (346)
                      ..++.++.++ +..+|..+++.+.....-... ....+...-..  .++  .++.++.      ++.|..+|..+++.+.
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v--~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPK-VGSTLTQAPFV--AKD--TVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEE--ETT--EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-ccceeccCCEE--ECC--EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            4555555555 999999999887665431100 00011110011  134  4555544      7999999999999887


Q ss_pred             eeccCCCc-------------------------------------e-EEEEEeCCCCceEEEeeCC--------------
Q 019117          123 SFVGHGDS-------------------------------------I-NEIRTQPLKPSLVVSASKD--------------  150 (346)
Q Consensus       123 ~~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d--------------  150 (346)
                      .+......                                     + ..+++.+ ....++.+..+              
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCce
Confidence            66532110                                     0 1355666 44555555432              


Q ss_pred             --CCEEEEecCCCeeEEEecccC-------CCCcceEEEEecCCCC---cEEEEEecCCeEEEEEccccceee
Q 019117          151 --ESVRLWNVQTGICILIFAGAG-------GHRNEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYV  211 (346)
Q Consensus       151 --~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~  211 (346)
                        +.|..+|.++++.+..++...       ....++. +...+ ++   ..++.++.+|.+.++|..+++...
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w  340 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence              359999999999988876321       0112222 22223 45   467788889999999998865533

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.79  E-value=2.9e-05  Score=71.55  Aligned_cols=272  Identities=11%  Similarity=0.011  Sum_probs=154.5

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee---cCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV---DEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      ...|+++...+    +|.+.+... ++|.+|+..++.. ..+....   .......|.++..  +++|.  |..|+.++-
T Consensus       262 ~~~i~~i~~d~----~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~--D~~g~--lWigt~~~G  331 (795)
T 4a2l_A          262 SNYIRSLAMDS----QNRLWIGTF-NDLNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFM--DSQGG--MWLGTYFGG  331 (795)
T ss_dssp             CSBEEEEEECT----TSCEEEEES-SCEEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEE--CTTSC--EEEEESSSC
T ss_pred             CCeEEEEEEcC----CCCEEEEeC-ChhheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEE--eCCcC--EEEEECCCC
Confidence            35688888765    566666554 4899999665543 2222110   0112345665554  47776  677777777


Q ss_pred             EEEEEccCcceeeeec------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-----CCCCcceE
Q 019117          110 IRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-----GGHRNEVL  178 (346)
Q Consensus       110 i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~  178 (346)
                      |..|+..+++......      -....|.++...+ ++ .|..|+.++-|..||..+++........     .-....|.
T Consensus       332 l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          332 LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence            9999876654322111      0235688988876 44 4666777777999998876544332110     01246789


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEe
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS  257 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~  257 (346)
                      ++...+ ++.+|..|+.++-|..||..+.+......     .          .    .......|.++..+ ...|..|+
T Consensus       410 ~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-----~----------~----~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          410 AVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQ-----R----------N----SQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             EEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECT-----T----------T----SCCSCSCEEEEEECSSSCEEEEE
T ss_pred             EEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeec-----C----------C----CCcCCCeeEEEEECCCCCEEEEe
Confidence            999886 67646667777789999987632110000     0          0    00123467777776 34455555


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee---e---e
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA---R---L  331 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~---~  331 (346)
                      . +.+.+||..+++.......   ..........|.++...+++  . |..|+. +-|..||..+++. ...   .   +
T Consensus       470 ~-~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~~g--~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l  540 (795)
T 4a2l_A          470 L-SALVRFNPEQRSFTTIEKE---KDGTPVVSKQITTLFRDSHK--R-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNV  540 (795)
T ss_dssp             S-SCEEEEETTTTEEEECCBC---TTCCBCCCCCEEEEEECTTC--C-EEEEES-SCEEEEEEETTEE-EECCCSCSCGG
T ss_pred             c-CceeEEeCCCCeEEEcccc---ccccccCCceEEEEEECCCC--C-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCC
Confidence            5 4588899876542110000   00001123568888888777  3 333444 4588899877643 111   0   1


Q ss_pred             -eeeEEEEEecCCCC
Q 019117          332 -ICFSLHVKYNPQSV  345 (346)
Q Consensus       332 -~~~~~~~~~spdg~  345 (346)
                       ...+.++...++|+
T Consensus       541 ~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          541 TKLFTNCIYEASNGI  555 (795)
T ss_dssp             GGSCEEEEEECTTSC
T ss_pred             CCCeeEEEEECCCCC
Confidence             12467777777775

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.75  E-value=4.7e-05  Score=62.62  Aligned_cols=160  Identities=9%  Similarity=-0.061  Sum_probs=97.4

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..+..++|++   .++.++.+-...+ |..++.........+..     .......+++.  +.+..++++-...+.|.+
T Consensus        73 ~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----~~~~p~glavd--~~~g~ly~~d~~~~~I~~  142 (349)
T 3v64_C           73 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVST-----GLESPGGLAVD--WVHDKLYWTDSGTSRIEV  142 (349)
T ss_dssp             SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSCCCEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEec---cccEEEEEeccCCceEEEecCCCCceEEEeC-----CCCCccEEEEe--cCCCeEEEEcCCCCeEEE
Confidence            3467889987   2345555554444 88888665443222211     11222335554  644426666666789999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      .+++.......+...-.....+++.|.++.++++-... +.|...++.. .....+..  ..-...+.++++|.++.+++
T Consensus       143 ~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~--~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          143 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIAD--THLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             EETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCC--SSCSCEEEEEEETTTTEEEE
T ss_pred             EcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEE--CCCCCcceEEEeCCCCEEEE
Confidence            99875443333333445678999998555555665555 7788888763 33333321  23456789999985666666


Q ss_pred             EEecCCeEEEEEccc
Q 019117          192 SCGMDNTVKIWSMKE  206 (346)
Q Consensus       192 s~~~d~~i~iwd~~~  206 (346)
                      +-...+.|..+|+..
T Consensus       220 aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          220 VDAKHHVIERANLDG  234 (349)
T ss_dssp             EETTTTEEEEEETTS
T ss_pred             EECCCCEEEEEeCCC
Confidence            666678899999875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.75  E-value=1.7e-05  Score=69.93  Aligned_cols=75  Identities=8%  Similarity=0.057  Sum_probs=48.4

Q ss_pred             cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEE-
Q 019117          259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLH-  337 (346)
Q Consensus       259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-  337 (346)
                      +|.|..||+.+++.         +-+..... ++..-.....+  .+++.++.||.++.||.++++.+-.+++...+.. 
T Consensus       465 ~G~l~A~D~~tG~~---------~W~~~~~~-~~~~g~~~tag--glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~  532 (582)
T 1flg_A          465 VGSLRAMDPVSGKV---------VWEHKEHL-PLWAGVLATAG--NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             SEEEEEECTTTCCE---------EEEEEESS-CCCSCCEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             cceEEEEECCCCCE---------EEEecCCC-CCcccceEeCC--CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence            68899999998873         22222111 11111122234  4777899999999999999998887777655432 


Q ss_pred             -EEecCCCC
Q 019117          338 -VKYNPQSV  345 (346)
Q Consensus       338 -~~~spdg~  345 (346)
                       +.|..||+
T Consensus       533 P~~y~~~G~  541 (582)
T 1flg_A          533 PITWEQDGE  541 (582)
T ss_dssp             CEEEEETTE
T ss_pred             ceEEEECCE
Confidence             56666664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.75  E-value=4e-05  Score=62.33  Aligned_cols=242  Identities=11%  Similarity=0.011  Sum_probs=130.3

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC---------------CCccceEEEEEEEcC-C
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---------------DKEESFYTVSWACNV-D   96 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~-~   96 (346)
                      ....+++|.+    ++.++.++..++ |..|+...+.. ..+......               ........+++.  + +
T Consensus        19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~--~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN--LQN   91 (322)
T ss_dssp             SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE--TTT
T ss_pred             CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEc--CCC
Confidence            3455678877    677566665554 88888654432 222210000               001234555554  6 5


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeee---cc-CCCceEEEEEeCCCCceEEEeeC-----------------CCCEEE
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSF---VG-HGDSINEIRTQPLKPSLVVSASK-----------------DESVRL  155 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~l~s~~~-----------------d~~i~i  155 (346)
                      |.  |+.+...+.|..+|..+++.....   .+ .......+++.+.++.+.++-..                 ++.|..
T Consensus        92 g~--l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQ--LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TE--EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             Cc--EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            54  555544556888887765422111   11 12346789998723444444322                 367888


Q ss_pred             EecCCCeeEEEecccCCCCcceEEEEecCCCCcE-EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117          156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  234 (346)
Q Consensus       156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
                      +|..+++......    .......++++| +++. +++-...+.|.+|++......                  ......
T Consensus       170 ~d~~~~~~~~~~~----~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~------------------~~~~~~  226 (322)
T 2fp8_A          170 YDPSTKETTLLLK----ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKG------------------TAEVLV  226 (322)
T ss_dssp             EETTTTEEEEEEE----EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTT------------------CEEEEE
T ss_pred             EeCCCCEEEEecc----CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCC------------------ccceEE
Confidence            8887666433322    223456799998 7664 455466789999998752100                  000011


Q ss_pred             EEeecccceEEEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEe
Q 019117          235 IASVHSNYVDCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFS  298 (346)
Q Consensus       235 ~~~~~~~~i~~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s  298 (346)
                      .   ... ...++++  |++.++...          .+.|..+|.. ++         .+..+...    ...+..+++ 
T Consensus       227 ~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~---------~~~~~~~~~g~~~~~~~~~~~-  291 (322)
T 2fp8_A          227 K---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN---------ILEVIPLPPPFAGEHFEQIQE-  291 (322)
T ss_dssp             E---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC---------EEEEEECCTTTTTSCCCEEEE-
T ss_pred             e---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC---------EEEEEECCCCCccccceEEEE-
Confidence            1   112 4556666  665555544          4678888875 33         22333222    234666666 


Q ss_pred             ecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          299 CDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      .++  .++++...++.|..+++....
T Consensus       292 ~~g--~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          292 HDG--LLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             ETT--EEEEECSSCSEEEEEEC----
T ss_pred             eCC--EEEEeecCCCceEEEeccccc
Confidence            355  566666678899999987544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.73  E-value=2.4e-05  Score=65.38  Aligned_cols=202  Identities=8%  Similarity=-0.093  Sum_probs=115.9

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..+..++|.+   ..+.++.+-...+ |..++.........+..     .......+++.  +.+..++++-...+.|.+
T Consensus       116 ~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----~~~~p~glavd--~~~g~lY~~d~~~~~I~~  185 (386)
T 3v65_B          116 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVST-----GLESPGGLAVD--WVHDKLYWTDSGTSRIEV  185 (386)
T ss_dssp             SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCCEEEEECS-----SCSCCCCEEEE--TTTTEEEEEETTTTEEEE
T ss_pred             CccEEEEEec---CCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-----CCCCccEEEEE--eCCCeEEEEcCCCCeEEE
Confidence            4467899987   2345555554444 88888665443222211     11122235544  644425566666788999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      .+++.......+...-.....+++.|.++.++++-... +.|...++... ....+..  ..-.....|+++|.++.+++
T Consensus       186 ~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~--~~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          186 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD--THLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             CBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC--SSCSCEEEEEEEGGGTEEEE
T ss_pred             EeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEE--CCCCCeeeEEEeCCCCEEEE
Confidence            88765443333333445678999998555555555444 67888887643 3333321  23446789999984566666


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCC
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      +-...+.|..+|+.....                       .............+++. +.++++-...+.|..++..++
T Consensus       263 aD~~~~~I~~~d~dG~~~-----------------------~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHR-----------------------KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EETTTTEEEEECTTSCSC-----------------------EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCEEEEEeCCCCee-----------------------EEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            666678899998865111                       00111112233445555 445555556788888886555


Q ss_pred             C
Q 019117          271 E  271 (346)
Q Consensus       271 ~  271 (346)
                      +
T Consensus       320 ~  320 (386)
T 3v65_B          320 K  320 (386)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.70  E-value=7.3e-06  Score=72.17  Aligned_cols=152  Identities=11%  Similarity=0.068  Sum_probs=91.8

Q ss_pred             EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEccCcceeeee
Q 019117           52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKSF  124 (346)
Q Consensus        52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~  124 (346)
                      ++.++.++ +..+|..+++.+......... ....+..--..  .++  .+++++      .+|.|+.+|..+++.+..+
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v--~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~  198 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYV--VKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEE--ETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEE--ECC--EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence            55555555 999999999887665431100 00011110011  134  455554      3799999999999988776


Q ss_pred             ccCCCc-------------------------------------e-EEEEEeCCCCceEEEeeCC----------------
Q 019117          125 VGHGDS-------------------------------------I-NEIRTQPLKPSLVVSASKD----------------  150 (346)
Q Consensus       125 ~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d----------------  150 (346)
                      ......                                     + ...++.+ ...+++.+..+                
T Consensus       199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~  277 (599)
T 1w6s_A          199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWT  277 (599)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCcccc
Confidence            532111                                     0 1345556 55566666544                


Q ss_pred             CCEEEEecCCCeeEEEecccCCCC--------cceEEEEec-CCCC---cEEEEEecCCeEEEEEccccceeee
Q 019117          151 ESVRLWNVQTGICILIFAGAGGHR--------NEVLSVDFH-PSDI---YRIASCGMDNTVKIWSMKEFWTYVE  212 (346)
Q Consensus       151 ~~i~iwd~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~  212 (346)
                      +.|..+|.++++.+..++... |.        .++. +... . ++   ..++.++.+|.+.++|.++++....
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~-~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTP-HDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESST-TCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCC-CccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence            379999999999998887421 21        1222 2222 3 45   5677788999999999988665443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.69  E-value=7e-05  Score=60.40  Aligned_cols=236  Identities=9%  Similarity=-0.019  Sum_probs=127.7

Q ss_pred             ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      ....+....+... .....++|+|    +++++++-..++ |..||... .....+.      .......+++  +++|+
T Consensus        19 ~~~~~~~~~~p~~-~~pegia~~~----~g~lyv~d~~~~~I~~~d~~g-~~~~~~~------~~~~p~gia~--~~dG~   84 (306)
T 2p4o_A           19 LAPAKIITSFPVN-TFLENLASAP----DGTIFVTNHEVGEIVSITPDG-NQQIHAT------VEGKVSGLAF--TSNGD   84 (306)
T ss_dssp             CCCEEEEEEECTT-CCEEEEEECT----TSCEEEEETTTTEEEEECTTC-CEEEEEE------CSSEEEEEEE--CTTSC
T ss_pred             CCCceEeEeCCCC-CCcceEEECC----CCCEEEEeCCCCeEEEECCCC-ceEEEEe------CCCCceeEEE--cCCCc
Confidence            3445556666433 5577899988    677777775555 88888543 3322222      1234445555  48888


Q ss_pred             cEEEEeecC--CeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecc-----
Q 019117           99 PFLVAGGIN--GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAG-----  169 (346)
Q Consensus        99 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~-----  169 (346)
                       ++++....  ..|..+|..+++...... ........++..+ ++..+++-..++.|.++|...++. +.....     
T Consensus        85 -l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A           85 -LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             -EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             -EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence             65555332  246677777776533222 1222334555555 555555555688899999875432 211110     


Q ss_pred             -cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117          170 -AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW  248 (346)
Q Consensus       170 -~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  248 (346)
                       ....-.....+  +|+++.++++-...+.|..|++..... ..                ........    .....+++
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~~----------------~~~~~~~~----~~P~gi~v  219 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-PG----------------EPEIFVEQ----TNIDDFAF  219 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-BC----------------CCEEEEES----CCCSSEEE
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-CC----------------ccEEEecc----CCCCCeEE
Confidence             00112244556  663445566666678999999874100 00                00000011    12334555


Q ss_pred             c--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe---ecCC
Q 019117          249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS---CDFH  302 (346)
Q Consensus       249 ~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~  302 (346)
                      +  |++.++....+.|.++|.. ++.       ..+..+.......++++|.   +++.
T Consensus       220 d~dG~l~va~~~~~~V~~~~~~-G~~-------~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          220 DVEGNLYGATHIYNSVVRIAPD-RST-------TIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             BTTCCEEEECBTTCCEEEECTT-CCE-------EEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             CCCCCEEEEeCCCCeEEEECCC-CCE-------EEEeecccccCCceEEEEecccCCCC
Confidence            5  7776666667899999975 331       0122233333567899998   7863

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=0.00011  Score=67.43  Aligned_cols=268  Identities=9%  Similarity=-0.032  Sum_probs=150.2

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ..|.++...+    ++.+.+... +++.+||..++..........  .......|.++..  .++|.  |..|...+-|.
T Consensus       211 ~~i~~i~~d~----~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~--lWigt~~~Gl~  281 (781)
T 3v9f_A          211 NDVRCIYKDT----NGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ--LKDNK--LWIATELNGIM  281 (781)
T ss_dssp             SSEEEEEECT----TCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEE--CTTSE--EEEEESSSCEE
T ss_pred             CceeEEEEcC----CCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEE--CCCCC--EEEEeCCCCeE
Confidence            4577777655    566666654 489999966554322111100  0112345655544  36665  66677645688


Q ss_pred             EEEccCcceeeeec--------------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec------ccC
Q 019117          112 VIDVSNEKLHKSFV--------------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------GAG  171 (346)
Q Consensus       112 iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~  171 (346)
                      ++|..+++......              -....|.++...+ ++ .|..|+.++-|..++...........      ...
T Consensus       282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~  359 (781)
T 3v9f_A          282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESS  359 (781)
T ss_dssp             EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSC
T ss_pred             EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCC
Confidence            89987665322111              1345788988876 44 46667767779999987554322211      001


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-C
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G  250 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  250 (346)
                      .....|.++...+ ++. |..|+.++-|..||.........                    ..........|.++..+ .
T Consensus       360 l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~--------------------~~~~~~~~~~v~~i~~d~~  417 (781)
T 3v9f_A          360 LSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIYN--------------------KENRELLSNSVLCSLKDSE  417 (781)
T ss_dssp             CSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEECC-------------------------CCCSBEEEEEECTT
T ss_pred             CCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEEc--------------------cCCCCCCCcceEEEEECCC
Confidence            1345799999886 555 55566666788888765211000                    00001234568888776 5


Q ss_pred             CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      ..|..|+.++.+..++..+++...       ..........|.++...+++  . |..|+. +-|..||..+++......
T Consensus       418 g~lWigt~~~Gl~~~~~~~~~~~~-------~~~~~~~~~~v~~i~~d~~g--~-lwigt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          418 GNLWFGTYLGNISYYNTRLKKFQI-------IELEKNELLDVRVFYEDKNK--K-IWIGTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             SCEEEEETTEEEEEECSSSCEEEE-------CCSTTTCCCCEEEEEECTTS--E-EEEEET-TEEEEEESSSSSCCEEEC
T ss_pred             CCEEEEeccCCEEEEcCCCCcEEE-------eccCCCCCCeEEEEEECCCC--C-EEEEEC-CceEEEeCCCCeEEeccc
Confidence            566667777779999987654210       00001234578888777776  3 444444 458899988766433322


Q ss_pred             e------eeeEEEEEecCCCC
Q 019117          331 L------ICFSLHVKYNPQSV  345 (346)
Q Consensus       331 ~------~~~~~~~~~spdg~  345 (346)
                      .      ...+.++...++|+
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~  507 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGR  507 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCC
T ss_pred             CcccccccceeEEEEEcCCCC
Confidence            1      23466777777664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=4.2e-05  Score=70.30  Aligned_cols=251  Identities=10%  Similarity=-0.055  Sum_probs=141.5

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeee-----ecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSY-----VDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ...|.++...+    +|.+.+....++|..++...... ..+...     ........|.++..  +++|.  |..|+.+
T Consensus       312 ~~~v~~i~~D~----~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~--lWigt~~  382 (781)
T 3v9f_A          312 NASARYIFQDS----FNNIWIGTWGGGINFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCD--DGQGK--LWIGTDG  382 (781)
T ss_dssp             SSCEEEEEECS----SCCEEEEEBSSCEEEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEE--CTTSC--EEEEEBS
T ss_pred             CCeEEEEEEeC----CCCEEEEecCCeEEEeCCCCCcc-eeeccCccccccCCCCCcceEEEEE--cCCCC--EEEEeCC
Confidence            45688888765    56766666577799998655432 222110     01112345655544  36675  6677766


Q ss_pred             CeEEEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          108 GIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      +-|..|+..+++.....   ......|.++...+ ++ .|..|+.++-|..+|..+++.. .+.........|.++...+
T Consensus       383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~  459 (781)
T 3v9f_A          383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EG-NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDK  459 (781)
T ss_dssp             SCEEEEETTEEEEECC-----CCCSBEEEEEECT-TS-CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECT
T ss_pred             CcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CC-CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECC
Confidence            66889997765432211   12346788888876 44 4555676667899998776543 3321012346789998886


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIV  263 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~  263 (346)
                       ++.+ ..|+. +-|..||..+........     ..        .     .......|.++..+ ...|..|+.++-+.
T Consensus       460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~-----~~--------~-----~~~~~~~i~~i~~d~~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYD-----TS--------N-----SQLLENFVRSIAQDSEGRFWIGTFGGGVG  518 (781)
T ss_dssp             -TSEE-EEEET-TEEEEEESSSSSCCEEEC-----TT--------T-----SSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred             -CCCE-EEEEC-CceEEEeCCCCeEEeccc-----Cc--------c-----cccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence             6654 44454 568888877622100000     00        0     00113557777776 44566666655588


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      .+|..+.+...      ....-......|.++...+++  . |..++.+|.|..||..+++.
T Consensus       519 ~~~~~~~~~~~------~~~~~~l~~~~i~~i~~d~~g--~-lWi~T~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          519 IYTPDMQLVRK------FNQYEGFCSNTINQIYRSSKG--Q-MWLATGEGLVCFPSARNFDY  571 (781)
T ss_dssp             EECTTCCEEEE------ECTTTTCSCSCEEEEEECTTS--C-EEEEETTEEEEESCTTTCCC
T ss_pred             EEeCCCCeEEE------ccCCCCCCCCeeEEEEECCCC--C-EEEEECCCceEEECCCCCcE
Confidence            89887653110      000011134568888887777  3 44444466658888877653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.67  E-value=0.00011  Score=61.65  Aligned_cols=237  Identities=5%  Similarity=-0.073  Sum_probs=139.2

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc----ceeeeec
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV  125 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~  125 (346)
                      .+|+.+....|+..++........+.      ....+..++|.  +.+..++++-...+.|..+++...    .....+.
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~------~~~~~~~l~~d--~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred             ceeEEeccceeEEEccCCcceeEecc------ccCcceEEeee--eccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence            46666666678888877654433332      23345556665  655425555556788999998652    2223333


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEEc
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSM  204 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~  204 (346)
                      ........+++.+.+++++++-...+.|.+.++........+.   ........|+++|.++.++++-.. .+.|...++
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence            3445678899987456666676777899999987554433343   234568899999845555555433 367888887


Q ss_pred             cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccc
Q 019117          205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      ....                       ........-.....|+++  ++.|..+ ...+.|..+|++....       ..
T Consensus       233 dG~~-----------------------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~  282 (400)
T 3p5b_L          233 NGVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KT  282 (400)
T ss_dssp             TSCS-----------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EE
T ss_pred             CCCc-----------------------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EE
Confidence            6511                       111111122345667776  4555444 4567899999875431       11


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  330 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (346)
                      +...........++++. .+  .++.+-...+.|..+|..+++.+....
T Consensus       283 ~~~~~~~l~~P~gl~v~-~~--~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          283 ILEDEKRLAHPFSLAVF-ED--KVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEECSSTTSSEEEEEEE-TT--EEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEeCCCCCCCCEEEEEe-CC--EEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            11111122344566663 22  466777778899999987877655443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.64  E-value=0.00019  Score=65.38  Aligned_cols=236  Identities=6%  Similarity=-0.075  Sum_probs=134.0

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc----ceeeeec
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV  125 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~  125 (346)
                      .+|+.+....|+..++........+.      ....+..+++.  +.+..++++-...+.|+.+++...    .....+.
T Consensus       396 p~Ll~an~~~Ir~i~l~~~~~~~l~~------~~~~~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          396 AYLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             CEEEEECBSSEEEECTTSCCCEEEEC------SCSSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             cccccccccceeEeeccCCcceeeec------CCCceEEEeec--ccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            35555555668887776554433332      22334445554  644425566666788999988753    2233333


Q ss_pred             cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEc
Q 019117          126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSM  204 (346)
Q Consensus       126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~  204 (346)
                      ........|++.+.+++++++-...+.|.+.++........+.   ........|+++|..+.++++-... +.|...++
T Consensus       468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence            3445667899987455677777778899999987444333333   2445689999998445555554333 67888887


Q ss_pred             cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccc
Q 019117          205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      ....                       ........-.....|+++  +..|+.+ ...+.|...++......       .
T Consensus       545 dG~~-----------------------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-------~  594 (791)
T 3m0c_C          545 NGVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------T  594 (791)
T ss_dssp             TSCC-----------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------E
T ss_pred             CCCc-----------------------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-------E
Confidence            6521                       111111122345667766  4444444 45678999998764311       1


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      +..-...-....+|++.  +. .++++-...+.|...|..+++.+..+
T Consensus       595 v~~~~~~l~~P~glav~--~~-~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          595 ILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEECTTTTSSEEEEEEE--TT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EecCCCccCCCCEEEEe--CC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            11111111234455553  32 46666677788988888777654443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.63  E-value=0.00011  Score=59.53  Aligned_cols=234  Identities=8%  Similarity=-0.031  Sum_probs=135.0

Q ss_pred             cEEEEEcCCcEEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCccee-eeecc
Q 019117           50 NVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-KSFVG  126 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~  126 (346)
                      .+|+.+....|+..++....  ....+..      ......+.|.  +.+..++.+-...+.|..+++...... ..+..
T Consensus         5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~------~~~~~~ld~d--~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~   76 (318)
T 3sov_A            5 PLLLYANRRDLRLVDATNGKENATIVVGG------LEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS   76 (318)
T ss_dssp             CEEEEECEEEEEEEETTCTTSCCEEEEEE------EEEEEEEEEE--GGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred             cEEEEEccCeEEEEECCCCceEEEEEecC------CCccEEEEEE--eCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence            35566655669999987653  1122221      1223334444  644426666667789999998766422 22222


Q ss_pred             CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcc
Q 019117          127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMK  205 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~  205 (346)
                      .-.....+++.+.++.++++-...+.|.++++........+.   ........++++|.++.++++-. ..+.|...++.
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            334567888887456666776677899999986433322222   24456789999984455555442 35778888776


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                      ....                       .......-..-..++++  ++.| ++-+..+.|..+|++....       ..+
T Consensus       154 G~~~-----------------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~  203 (318)
T 3sov_A          154 GSSR-----------------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV  203 (318)
T ss_dssp             SCSC-----------------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE
T ss_pred             CCCe-----------------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE
Confidence            4110                       00111112234567776  4444 4445578899999875331       011


Q ss_pred             ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      .  .........+++..+   .++.+-...+.|..++..+++.....
T Consensus       204 ~--~~~~~~P~glav~~~---~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          204 V--KGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             E--CSCCSCEEEEEEETT---EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             e--cCCCCCceEEEEeCC---EEEEEecCCCeEEEEECCCCCceEEE
Confidence            1  112335566777432   46667777889999999887754443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.63  E-value=2.1e-06  Score=77.07  Aligned_cols=203  Identities=13%  Similarity=0.046  Sum_probs=114.0

Q ss_pred             ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCc-----cce-EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceee
Q 019117           49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKE-----ESF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK  122 (346)
Q Consensus        49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-----~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  122 (346)
                      +.+++....+.|..+|..+++.+............     ..+ ..+++    .+. .++.++.|+.|..+|..+++.+.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGD-KVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBT-EEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECC-EEEEEcCCCEEEEEECCCCCEee
Confidence            44555444444999999999887766432110000     000 01122    133 68888889999999999999887


Q ss_pred             eeccCC----CceEE-EEEeCCCCceEEEeeC------CCCEEEEecCCCeeEEEecccCCCC-----------------
Q 019117          123 SFVGHG----DSINE-IRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHR-----------------  174 (346)
Q Consensus       123 ~~~~~~----~~v~~-~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~-----------------  174 (346)
                      .+....    ..+.+ -.+.  ++ .++.+..      +|.|..+|.++|+.+..+....+..                 
T Consensus       142 ~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  218 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             eeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence            775421    11111 1111  33 4454433      5899999999999998886311110                 


Q ss_pred             -----------cceEEEEecCCCCcEEEEEecCC-------------------eEEEEEccccceeeeeceeecCCCCCC
Q 019117          175 -----------NEVLSVDFHPSDIYRIASCGMDN-------------------TVKIWSMKEFWTYVEKSFTWTDLPSKF  224 (346)
Q Consensus       175 -----------~~v~~~~~~~~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (346)
                                 .....++++| ...+++.++.++                   .|..+|.++++.........  +. ..
T Consensus       219 g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~--~~-~w  294 (668)
T 1kv9_A          219 GDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP--GD-SW  294 (668)
T ss_dssp             SSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST--TC-CS
T ss_pred             ccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC--Cc-cc
Confidence                       0112467887 666777777665                   38888888854322211100  00 00


Q ss_pred             CCccceeceEEEeecccceEEEEecCC---EEEEEeecCeEEEEcCCCCCC
Q 019117          225 PTKYVQFPVFIASVHSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQ  272 (346)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~  272 (346)
                      .. ...        .+..+..+.+.|+   .++.++.+|.+.++|..+++.
T Consensus       295 d~-~~~--------~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          295 DF-TAT--------QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             CC-CCC--------SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cc-cCC--------CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence            00 000        0001122333444   688899999999999998874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.58  E-value=8.3e-05  Score=57.63  Aligned_cols=200  Identities=11%  Similarity=0.030  Sum_probs=125.8

Q ss_pred             eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117          123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  202 (346)
Q Consensus       123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  202 (346)
                      .+.+-...+..++++|+++.++++...++.|...|.. ++.+..+..  +-....-.+++.+ ++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l--~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL--DFVKDLETIEYIG-DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--SSCSSEEEEEECS-TTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--CCCCChHHeEEeC-CCEEEEEECCCCcEEEE
Confidence            4555667899999999555566667888999999998 888887752  1225677888887 77776776667889999


Q ss_pred             Eccccceeee-eceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117          203 SMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       203 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  279 (346)
                      ++........ ...              ..++. ..........++|+  ++.|.++.......+|.++......   ..
T Consensus        97 ~v~~~~~i~~~~~~--------------~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~---~l  158 (255)
T 3qqz_A           97 SLTPNSEVKILKKI--------------KIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN---EL  158 (255)
T ss_dssp             EECTTCCEEEEEEE--------------ECCCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS---CC
T ss_pred             EcCCCCeeeeeeee--------------ccccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC---ce
Confidence            8876321000 000              00000 01234456889998  5577777776555666554210000   00


Q ss_pred             cccc----cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee----------eEEEEEecCCCC
Q 019117          280 DILQ----KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC----------FSLHVKYNPQSV  345 (346)
Q Consensus       280 ~~~~----~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~spdg~  345 (346)
                      ..+.    .-..+...+.++++.|... .+++.......|.++|.. ++++....+..          ....|+|.|+|+
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg-~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQKN-TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETTTT-EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             eeecchhhccccccCCceeEEEcCCCC-eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            0110    0011234678999999875 677778888899999976 45666666652          357799999986


Q ss_pred             C
Q 019117          346 Y  346 (346)
Q Consensus       346 ~  346 (346)
                      +
T Consensus       237 l  237 (255)
T 3qqz_A          237 I  237 (255)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=0.00016  Score=58.32  Aligned_cols=227  Identities=11%  Similarity=0.034  Sum_probs=126.0

Q ss_pred             eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCee
Q 019117           86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGIC  163 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~  163 (346)
                      ...++|.  ++|+ ++++-..++.|..||.... ....+. ....+..+++.+ +++++++.....  .|..+|..+++.
T Consensus        34 pegia~~--~~g~-lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           34 LENLASA--PDGT-IFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             EEEEEEC--TTSC-EEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cceEEEC--CCCC-EEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE
Confidence            3445555  8887 7777767899999997653 333332 345688999999 677665554322  466677777765


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ......  ........++..+ ++..+++-..++.|.++|............... .... ..           ..-...
T Consensus       108 ~~~~~~--~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~-~~~~-~~-----------~~~~~p  171 (306)
T 2p4o_A          108 ETLLTL--PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-ARSN-SE-----------SVFPAA  171 (306)
T ss_dssp             EEEEEC--TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-SCSS-TT-----------CCSCSE
T ss_pred             EEEEeC--CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc-cccc-cc-----------CCCCcC
Confidence            433321  1222345555555 566555555688898888764211110000000 0000 00           000112


Q ss_pred             EEEEecCCEE-EEEeecCeEEEEcCCC-CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          244 DCNRWLGDFI-LSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       244 ~~~~~~~~~l-~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ..+..+++.| ++-...+.|..+++.. ++..    ........    .....+++.++|  .+.++....+.|.++|..
T Consensus       172 ngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~----~~~~~~~~----~~P~gi~vd~dG--~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          172 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEIFVEQ----TNIDDFAFDVEG--NLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEEBCTTSCBC----CCEEEEES----CCCSSEEEBTTC--CEEEECBTTCCEEEECTT
T ss_pred             CCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCC----ccEEEecc----CCCCCeEECCCC--CEEEEeCCCCeEEEECCC
Confidence            2233346544 4445678999999875 2210    01111111    245668899998  566666677899999975


Q ss_pred             CCCcceeee--ee-eeEEEEEec---CCCC
Q 019117          322 SSPPVLIAR--LI-CFSLHVKYN---PQSV  345 (346)
Q Consensus       322 ~~~~~~~~~--~~-~~~~~~~~s---pdg~  345 (346)
                       ++......  .. ..+.+++|.   ||++
T Consensus       242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             -CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             -CCEEEEeecccccCCceEEEEecccCCCC
Confidence             55432222  22 347889998   8864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=6.6e-05  Score=68.52  Aligned_cols=152  Identities=10%  Similarity=-0.012  Sum_probs=89.6

Q ss_pred             ceEEEEEE-eecCCCccEEEEEcC----Cc--EEEEEeccC-ceeee-EeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           35 PLYAVVFN-FIDSRYFNVFATVGG----NR--VTVYQCLEG-GVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        35 ~v~~~~~~-p~~~~~~~~la~~~~----~~--v~i~~~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      .+...+|| |    +|++||.+.+    +.  |+++|+.++ +.+.. +..        ....++|+  |||+ .|+...
T Consensus       175 ~~~~~~~S~P----DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~--------~~~~~~Ws--pDg~-~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPP----EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG--------TNGEIVWG--PDHT-SLFYVT  239 (751)
T ss_dssp             EEEEEEECTT----TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE--------ECSCCEEC--SSTT-EEEEEE
T ss_pred             EEeeeEecCC----CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC--------ceeeEEEe--cCCC-EEEEEE
Confidence            67889999 8    7888875432    22  999998887 53211 111        11224555  9998 555555


Q ss_pred             cC-----CeEEEEEccCcce--eeeec-cCCCceEEEEEeCCCCceEEEee---CCCCEEEEecCCCe-eE--EEecccC
Q 019117          106 IN-----GIIRVIDVSNEKL--HKSFV-GHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGI-CI--LIFAGAG  171 (346)
Q Consensus       106 ~d-----g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~-~~--~~~~~~~  171 (346)
                      .+     ..|.++++.+++.  ...+. ........+.|+| ++++|+..+   ....|.++|+.++. ..  ..+..  
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--  316 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--  316 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--
Confidence            44     3688888877642  22222 2234567889999 777666544   23468888887652 12  33321  


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecC--C--eEEEEEcc
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMD--N--TVKIWSMK  205 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d--~--~i~iwd~~  205 (346)
                      ........+.|+. ++.+++....+  +  .|..+|+.
T Consensus       317 ~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          317 REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence            2345566677664 66666665554  3  45556654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.50  E-value=1.2e-05  Score=72.19  Aligned_cols=117  Identities=11%  Similarity=0.031  Sum_probs=67.0

Q ss_pred             EEEEEeecCCCccEEEEEcCC------------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           38 AVVFNFIDSRYFNVFATVGGN------------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~------------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      ++++.|   .++++++.|+.+            .+.+||..+++.... ..... .+.......++  ..+|+ +++.|+
T Consensus       190 ~~av~~---~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~-~~~~~~~~~~~--~~~g~-lyv~GG  261 (656)
T 1k3i_A          190 AAAIEP---TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVT-KHDMFCPGISM--DGNGQ-IVVTGG  261 (656)
T ss_dssp             EEEEET---TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEEC-SCCCSSCEEEE--CTTSC-EEEECS
T ss_pred             eEEEEe---cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCC-CCCCccccccC--CCCCC-EEEeCC
Confidence            445554   246788887532            278888877653322 11111 11111112333  37888 888887


Q ss_pred             -cCCeEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEee-CC-----CCEEEEecCCCeeE
Q 019117          106 -INGIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSAS-KD-----ESVRLWNVQTGICI  164 (346)
Q Consensus       106 -~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~  164 (346)
                       .+..+.+||..+.+-..  .+.... .-.+++..+ ++++++.|+ .+     ..+.+||..+.+-.
T Consensus       262 ~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          262 NDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             SSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCCCceEEecCcCCceeECCCCCccc-cccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence             45689999988765322  222111 123455556 678888888 34     56899999877643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=0.00039  Score=58.89  Aligned_cols=156  Identities=10%  Similarity=0.077  Sum_probs=92.2

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-C----e
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-G----I  109 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g----~  109 (346)
                      ....|+++|.+  ++.++++-..+.|+.+|...+.......      .......+++.  ++|+ +|+.+... +    .
T Consensus       138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~v~~~~~------~~~~P~~ia~d--~~G~-~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEYVSTVYS------GLSKVRTICWT--HEAD-SMIITNDQNNNDRPN  206 (430)
T ss_dssp             CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTEEEEEEC------CCSCEEEEEEC--TTSS-EEEEEECCSCTTSEE
T ss_pred             CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCEEEEEec------CCCCcceEEEe--CCCC-EEEEEeCCCCcccce
Confidence            45678898610  2455555444448888876544332222      22334445554  8888 56665542 1    3


Q ss_pred             EEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          110 IRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       110 i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      +.+.+ ..+...  ..+.. ......++++|.++.++++-..++.|..++...+........  +.....+.++|+| ++
T Consensus       207 v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~~~~P~gia~~p-dG  281 (430)
T 3tc9_A          207 NYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QDSGWEFHIQFHP-SG  281 (430)
T ss_dssp             EEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SSSSCCEEEEECT-TS
T ss_pred             EEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CCCCcceeEEEcC-CC
Confidence            33344 333322  22322 234578889985566666666778999999986654333321  1234678999999 77


Q ss_pred             c-EEEEEecCCeEEEEEccc
Q 019117          188 Y-RIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       188 ~-~l~s~~~d~~i~iwd~~~  206 (346)
                      + ++++-...+.|..++...
T Consensus       282 ~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          282 NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SEEEEEETTTTEEEEEEEET
T ss_pred             CEEEEEECCCCEEEEEeCCc
Confidence            6 556666678899988764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.46  E-value=0.00024  Score=55.11  Aligned_cols=168  Identities=10%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG  105 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  105 (346)
                      +.+.+-.+.+..++|+|.   .+.++++...++ |...|.. ++.++.+..    ........+++.  +++. ++++.-
T Consensus        20 ~~l~g~~~~lSGla~~~~---~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~--~~g~-~~vs~E   88 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQ---SNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYI--GDNQ-FVISDE   88 (255)
T ss_dssp             EECTTCCSCEEEEEEETT---TTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEEC--STTE-EEEEET
T ss_pred             eECCCcccCcceeEEeCC---CCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEe--CCCE-EEEEEC
Confidence            345666678999999982   345666666666 8888876 666555532    112345556665  7776 666665


Q ss_pred             cCCeEEEEEccCcce---eeeec------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC---CCeeEEEecc----
Q 019117          106 INGIIRVIDVSNEKL---HKSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---TGICILIFAG----  169 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~----  169 (346)
                      .++.+.++++.....   +....      ..+.....++|+| .++.|+++.+.....+|.++   ....+..+..    
T Consensus        89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~  167 (255)
T 3qqz_A           89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ  167 (255)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred             CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence            678899998765432   12221      1345578999999 56566666655555666554   1111222210    


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      ...+...+.+++++|..+.+++.....+.+..+|...
T Consensus       168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence            0123446789999997788888888888999999876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.46  E-value=0.00023  Score=62.71  Aligned_cols=59  Identities=8%  Similarity=-0.010  Sum_probs=42.8

Q ss_pred             CeEEEEEccCcceeeeeccCC----------CceEEEEEe-CCCC---ceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117          108 GIIRVIDVSNEKLHKSFVGHG----------DSINEIRTQ-PLKP---SLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      +.|..+|.++++.+..++...          .++ -+... . ++   ..++.++.+|.+.++|.++++.+....
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            489999999999887776422          112 12222 3 45   567788999999999999999887765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.46  E-value=0.00034  Score=56.63  Aligned_cols=202  Identities=8%  Similarity=-0.084  Sum_probs=114.8

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      .+.+++|.+.   .+.++.+-..++ |..++...+.....+...    .-.....+++.  +.+..++++-...+.|.++
T Consensus        36 ~~~~ld~d~~---~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~l~~p~glavd--~~~g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----GLLSPDGLACD--WLGEKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGG---GTEEEEEETTTTEEEEEETTSSSCCCEEEEE----CCSCCCEEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEeC---CCEEEEEECCCCcEEEEEccCCCceEEEEcC----CCCCccEEEEE--cCCCeEEEEECCCCEEEEE
Confidence            4568889872   345555655554 888887655322211110    11122335544  5444266666667899999


Q ss_pred             EccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                      +++.......+.........+++.|.++.++++-. ..+.|...++. +.....+..  ..-...+.++++|.++.++++
T Consensus       107 ~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~--~~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIIN--SEIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEEC--SSCSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEE--CCCCCccEEEEeccCCEEEEE
Confidence            98754333333334456789999984444444432 35778888875 333333321  123567899999855666666


Q ss_pred             EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCC
Q 019117          193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKE  271 (346)
Q Consensus       193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~  271 (346)
                      -...+.|..+|+.....                       .............+++. +.++++-...+.|..++..+++
T Consensus       184 D~~~~~I~~~d~dG~~~-----------------------~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          184 DAKLNFIHKSNLDGTNR-----------------------QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             ETTTTEEEEEETTSCSC-----------------------EEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCEEEEEcCCCCce-----------------------EEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence            66678899999875111                       00011112233455555 4455555557889999887665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.45  E-value=0.00035  Score=56.53  Aligned_cols=206  Identities=8%  Similarity=-0.040  Sum_probs=115.2

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC---ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG---GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ...+.+++|++.   .+.++.+-..++ |..++....   .....+..    ..-.....+++.  +.+..+.++-...+
T Consensus        29 ~~~p~g~~~d~~---~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavd--~~~~~ly~~d~~~~   99 (316)
T 1ijq_A           29 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVD--WIHSNIYWTDSVLG   99 (316)
T ss_dssp             CSSEEEEEEETT---TTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEE--TTTTEEEEEETTTT
T ss_pred             CCceEEEEEEeC---CCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCCCCcCEEEEe--ecCCeEEEEECCCC
Confidence            345778999871   345556655544 888887651   22222110    011223445554  54442556656778


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      .|.+.+++.......+.........+++.|.++.++++.... +.|...++. +.....+..  ..-.....++++|.++
T Consensus       100 ~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~--~~~~~P~gla~d~~~~  176 (316)
T 1ijq_A          100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--ENIQWPNGITLDLLSG  176 (316)
T ss_dssp             EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC--SSCSCEEEEEEETTTT
T ss_pred             EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE--CCCCCceEEEEeccCC
Confidence            999999875443333333345678999998455555554333 678888875 444443321  2345688999998455


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEc
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd  266 (346)
                      .++++-...+.|..+|+.....                     ..+............+++. +.++++-...+.|..++
T Consensus       177 ~lY~~D~~~~~I~~~d~dg~~~---------------------~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          177 RLYWVDSKLHSISSIDVNGGNR---------------------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSCSC---------------------EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEecCCCce---------------------EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEe
Confidence            6556666677999999875111                     0010100011223455555 44555555577888888


Q ss_pred             CCCCC
Q 019117          267 PKMKE  271 (346)
Q Consensus       267 ~~~~~  271 (346)
                      ..+++
T Consensus       236 ~~~g~  240 (316)
T 1ijq_A          236 RLTGS  240 (316)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            76665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.44  E-value=5.8e-05  Score=68.91  Aligned_cols=112  Identities=9%  Similarity=-0.001  Sum_probs=68.8

Q ss_pred             EEEEEEEc-CCCCcEEEEeec-C----CeEEEEEccCc-ceee-eeccCCCceEEEEEeCCCCceEEEeeCC-----CCE
Q 019117           87 YTVSWACN-VDGIPFLVAGGI-N----GIIRVIDVSNE-KLHK-SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESV  153 (346)
Q Consensus        87 ~~~~~~~~-~~~~~~l~~~~~-d----g~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i  153 (346)
                      ....+.++ |||+ +|+.+.. +    ..|+++|+.++ +.+. .+.   .....+.|+| +++.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEE
Confidence            34567789 9998 6664432 2    35999999988 6322 121   1235788999 66666555544     358


Q ss_pred             EEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEEEec---CCeEEEEEccc
Q 019117          154 RLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKE  206 (346)
Q Consensus       154 ~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~  206 (346)
                      .++++.+++.  ...+..  ........+.|+| ++++|+....   ...|.++|+..
T Consensus       250 ~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEETTSCGGGCEEEEEC--CCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEEECCCCchhcEEEEec--CCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence            8888876542  223321  1234566889999 7766665442   33577778765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.43  E-value=9.9e-05  Score=64.95  Aligned_cols=59  Identities=10%  Similarity=0.029  Sum_probs=41.9

Q ss_pred             CeEEEEEccCcceeeeeccC--C--------CceEEEEEeCCCC---ceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117          108 GIIRVIDVSNEKLHKSFVGH--G--------DSINEIRTQPLKP---SLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~--~--------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      +.|..+|.++++.+..++..  .        .++ -+...+ ++   ..++.++.+|.+.++|..+++.+..+.
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            36999999999988777532  1        222 122223 44   367788899999999999999887765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.42  E-value=0.00056  Score=57.32  Aligned_cols=206  Identities=7%  Similarity=-0.073  Sum_probs=116.2

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc---eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG---VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      ...+..|+|++.   .+.++.+-..++ |..+++....   ....+..    ........+++.  +.+..+.++-...+
T Consensus       111 ~~~~~~l~~d~~---~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavD--~~~~~lY~~d~~~~  181 (400)
T 3p5b_L          111 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVD--WIHSNIYWTDSVLG  181 (400)
T ss_dssp             CSCEEEEEEETT---TTEEEEEETTTTEEEEEEC------CCCEEEEC----SSCSCEEEEEEE--TTTTEEEEEETTTT
T ss_pred             cCcceEEeeeec---cCceEEEecCCCeEEEEEcccCCCCCcceEEEe----CCCCCcccEEEE--ecCCceEEEECCCC
Confidence            456788999872   345555544444 8888765422   1111111    012234445554  54442666666778


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      .|.+.+++.......+...-.....|++.|.++.++++-.. .+.|...++........+.   ..-.....|++++.++
T Consensus       182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glavd~~~~  258 (400)
T 3p5b_L          182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLSG  258 (400)
T ss_dssp             EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---SSCSCEEEEEEETTTT
T ss_pred             eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---CCCCceEEEEEEeCCC
Confidence            99999987655444444344567899999944545555422 4788888886433322222   2335789999998455


Q ss_pred             cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEc
Q 019117          188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd  266 (346)
                      .++++-...+.|..+|+.....                     ..+......-.....+++. +.++++-...+.|..+|
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~~~---------------------~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          259 RLYWVDSKLHSISSIDVNGGNR---------------------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEEEETTTTEEEEEETTSCCC---------------------EEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCcc---------------------EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence            5555555677899999865211                     0111110111223455555 44555555677888888


Q ss_pred             CCCCC
Q 019117          267 PKMKE  271 (346)
Q Consensus       267 ~~~~~  271 (346)
                      ..+++
T Consensus       318 ~~~G~  322 (400)
T 3p5b_L          318 RLTGS  322 (400)
T ss_dssp             SSSCC
T ss_pred             cCCCC
Confidence            76665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.40  E-value=8.6e-05  Score=65.45  Aligned_cols=59  Identities=8%  Similarity=0.021  Sum_probs=43.1

Q ss_pred             CeEEEEEccCcceeeeecc--CC--------CceEEEEEe-CCCC---ceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117          108 GIIRVIDVSNEKLHKSFVG--HG--------DSINEIRTQ-PLKP---SLVVSASKDESVRLWNVQTGICILIFA  168 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~  168 (346)
                      +.|..+|..+++.+..++.  |.        .++ -+... . ++   ..++.++.+|.+.++|..+++.+..+.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecC-CCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence            6899999999999887753  21        122 12222 2 34   478889999999999999999887765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00065  Score=57.95  Aligned_cols=162  Identities=8%  Similarity=0.085  Sum_probs=93.0

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEE-----EEcCCCCcEEEEeecCC-
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSW-----ACNVDGIPFLVAGGING-  108 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~l~~~~~dg-  108 (346)
                      ...|+|.|.+  .+.++++..... |++.|..++.....+..  ..........++|     -++++|. .|+++...+ 
T Consensus       141 p~~la~dp~~--~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~--~~~~~~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~  215 (496)
T 3kya_A          141 NGRLAFDPLN--KDHLYICYDGHKAIQLIDLKNRMLSSPLNI--NTIPTNRIRSIAFNKKIEGYADEAE-YMIVAIDYDG  215 (496)
T ss_dssp             EEEEEEETTE--EEEEEEEEETEEEEEEEETTTTEEEEEECC--TTSSCSBEEEEEECCCBTTTBCTTC-EEEEEECCCT
T ss_pred             CCEEEEccCC--CCEEEEEECCCCeEEEEECCCCEEEEEEcc--CccccCCCcEEEEeecccccCCCCC-EEEEEeCCCC
Confidence            5688998721  245555554434 88888766554433321  1112234555666     0048887 566665443 


Q ss_pred             ------eEEEEEccC-ccee-----eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-------CCee------
Q 019117          109 ------IIRVIDVSN-EKLH-----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-------TGIC------  163 (346)
Q Consensus       109 ------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~------  163 (346)
                            .|.+.+... ++..     ..+... .....++++|.++.++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  255665333 2221     222221 2345788899566667777788889999987       4543      


Q ss_pred             -----EEE-ecccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccc
Q 019117          164 -----ILI-FAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       164 -----~~~-~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  206 (346)
                           ... +..  +.....+.++|+| +++ ++++-.....|+.++...
T Consensus       295 ~~~g~~~~l~~~--~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          295 NNPNTFKQLFTI--ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GCTTTEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccceeEec--CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence                 112 221  2345678999999 777 455555677898877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.36  E-value=1.6e-06  Score=78.12  Aligned_cols=235  Identities=6%  Similarity=-0.048  Sum_probs=125.4

Q ss_pred             EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----cceeeeecc
Q 019117           51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVG  126 (346)
Q Consensus        51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~  126 (346)
                      +|+.+....|+..++........+..      ...+..++|.  +.+..++++-...+.|..+++..    ......+..
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~~~~~~------~~~p~gla~d--~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~  450 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYTSLIPN------LRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  450 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEECCSCC------CTTCCCCEEE--TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred             eEEecCccceEEEeCCCCcceeeecc------CcceEEEccc--cccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence            34444445577777665544333322      1223345554  65552444445568899999875    222222222


Q ss_pred             CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEcc
Q 019117          127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK  205 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~  205 (346)
                      .......|++.+.++.++++-...+.|.++++........+.   ........++++|.++.++++-... +.|..+++.
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  527 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence            223356788875356666666667899999987544333332   2234567899998455555544333 677777665


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                      ....                       .......-.....|+++   +.++++-...+.|..+++......       .+
T Consensus       528 G~~~-----------------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-------~~  577 (699)
T 1n7d_A          528 GVDI-----------------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------TI  577 (699)
T ss_dssp             SCCC-----------------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-------EE
T ss_pred             CCCe-----------------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-------EE
Confidence            4110                       00000111223456665   445555566788999998754311       11


Q ss_pred             ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      ............|++..+   .++++....+.|..++..+++.+..+
T Consensus       578 ~~~~~~~~~P~glavd~~---~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          578 LEDEKRLAHPFSLAVFED---KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CCCSSSCSSCCCCEEETT---EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EecCCcCCCceEeEEECC---EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            111111123344555433   46666677789999998777654433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.35  E-value=0.00063  Score=54.90  Aligned_cols=206  Identities=11%  Similarity=0.072  Sum_probs=122.6

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-------eEEEeeC---CCCEEEEecC-CCeeEEEec
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-------LVVSASK---DESVRLWNVQ-TGICILIFA  168 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~s~~~---d~~i~iwd~~-~~~~~~~~~  168 (346)
                      +++.....+-+.+||+ +++.++.+..  +.++.+..-| +-.       ++++...   +++|.+|++. ....+..+.
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            6666677789999999 8888888864  5677777776 221       3333333   5789999773 222355553


Q ss_pred             cc--C-CCC-cceEEEEe--cCCCC-cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          169 GA--G-GHR-NEVLSVDF--HPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       169 ~~--~-~~~-~~v~~~~~--~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                      ..  . +.. ..+..+++  +|..+ .+++....+|.+..|++......                ......+..+..- .
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g----------------~~~~~lVR~f~lg-s  180 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG----------------YISGKKVRAFKMN-S  180 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------CEEEEEEEEEECS-S
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------cccceEEEEecCC-C
Confidence            10  0 011 56777887  66334 36888888999999999651100                0012234444433 3


Q ss_pred             ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEe--ecCCcceEEEEcCCCcE
Q 019117          242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFS--CDFHYNAAAIGNREGKI  315 (346)
Q Consensus       242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s--~~~~~~~l~~~~~dg~i  315 (346)
                      .+-.+..+  ...|..+-++..|..++.+.....    ....+..+.  .-...+..|++-  +++++-+++++-.++.+
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~----~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS----CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CcceEEEcCCCCeEEEecccceEEEEeCCcCCCC----CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            56666666  678999988877666664422100    011233322  122468888884  45532245555477899


Q ss_pred             EEEEcC-CCCcceeee
Q 019117          316 FVWELQ-SSPPVLIAR  330 (346)
Q Consensus       316 ~iwd~~-~~~~~~~~~  330 (346)
                      .+||.+ +.+.+..+.
T Consensus       257 ~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          257 AIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEESSTTCCEEEEEE
T ss_pred             EEEECCCCCcEEEEEE
Confidence            999997 555555554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.35  E-value=0.0013  Score=58.48  Aligned_cols=233  Identities=6%  Similarity=-0.132  Sum_probs=138.4

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .+|+.+....|+..++........+..    ..-.....++|.  +.+..++++-..++.|..++++.......+.....
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~l~~d--~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPL----TGVKEASALDFD--VTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCC----CSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEc----CCCCceEEEEEE--CCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            466666666799999876543222221    011234445554  75552555666788999999876544333333334


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccc
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFW  208 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~  208 (346)
                      ....+++.+.+++++++-...+.|.+.++........+.   ..-.....++++|..+.++++- +..+.|...++....
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~  157 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE  157 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence            567888887456666776777889999986443322222   2345678999998555555554 225677777776521


Q ss_pred             eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccccccc
Q 019117          209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                              ...+...-.....|+++  ++.|..+ ...+.|..+|+.....       ..+   
T Consensus       158 ------------------------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~---  203 (628)
T 4a0p_A          158 ------------------------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------EVI---  203 (628)
T ss_dssp             ------------------------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE---
T ss_pred             ------------------------eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------EEe---
Confidence                                    11111223445677776  4544444 5578899999876431       111   


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                      .........+++.. +  .++.+-...+.|...|..+++....
T Consensus       204 ~~~l~~P~glav~~-~--~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          204 ADDLPHPFGLTQYQ-D--YIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             EECCSCEEEEEEET-T--EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             eccCCCceEEEEEC-C--EEEEecCCCCEEEEEECCCCCceEE
Confidence            11223445677754 3  4666666788999999877765443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.33  E-value=0.0017  Score=59.18  Aligned_cols=161  Identities=9%  Similarity=-0.010  Sum_probs=95.8

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ...+.+|+|.+.   .+.++++-...+ |+.+++....    ....+..     .......+++.  +.+.+++++-...
T Consensus       423 ~~~~~gl~~d~~---~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-----~l~~P~GLAvD--~~~~~LY~tD~~~  492 (791)
T 3m0c_C          423 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAVD--WIHSNIYWTDSVL  492 (791)
T ss_dssp             CSSEEEEEEETT---TTEEEEEETTTTEEEEEEC--------CEEEECS-----SCSCCCEEEEE--TTTTEEEEEETTT
T ss_pred             CCceEEEeeccc---CCeeEEeeccceeEEEEeccCCCCCcceeEEEec-----CCCCcceeeee--ecCCcEEEEecCC
Confidence            445678888872   345555555444 8777765421    1111210     11223345554  6665366666778


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      +.|.+.+++.......+.........|++.|..+.++++-... +.|...++. +.....+..  ..-.....|++++.+
T Consensus       493 ~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~--~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--ENIQWPNGITLDLLS  569 (791)
T ss_dssp             TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC--SSCSCEEEEEEETTT
T ss_pred             CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEe--CCCCCceEEEEecCC
Confidence            8999999875544333333445688999999445555554333 678888886 443333331  234678999999745


Q ss_pred             CcEEEEEecCCeEEEEEccc
Q 019117          187 IYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~  206 (346)
                      +.++++-.....|...++..
T Consensus       570 ~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          570 GRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTS
T ss_pred             CeEEEEeCCCCcEEEEecCC
Confidence            55555555567899998865

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=3.9e-05  Score=68.92  Aligned_cols=234  Identities=8%  Similarity=-0.080  Sum_probs=118.1

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccce-EEEEEEEcCCCCcEEEEee-cC----
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESF-YTVSWACNVDGIPFLVAGG-IN----  107 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~-~d----  107 (346)
                      ..++++.+    ++.+++.|+.+.  +.+||..++.-.. +...    ..... ...+.  .++|+ +++.|+ .+    
T Consensus       245 ~~~~~~~~----~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~----~~~R~~~s~~~--~~dg~-iyv~GG~~~~~~~  312 (656)
T 1k3i_A          245 CPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM----QVARGYQSSAT--MSDGR-VFTIGGSWSGGVF  312 (656)
T ss_dssp             SCEEEECT----TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC----SSCCSSCEEEE--CTTSC-EEEECCCCCSSSC
T ss_pred             cccccCCC----CCCEEEeCCCCCCceEEecCcCCceeE-CCCC----CccccccceEE--ecCCe-EEEEeCcccCCcc
Confidence            33456666    678999998554  9999988764322 2211    11111 11222  26888 888887 34    


Q ss_pred             -CeEEEEEccCcceeee-----eccCCCceEEEEEeCCCCceEEEeeCCC---------CEEEEecCCCeeEEEecccCC
Q 019117          108 -GIIRVIDVSNEKLHKS-----FVGHGDSINEIRTQPLKPSLVVSASKDE---------SVRLWNVQTGICILIFAGAGG  172 (346)
Q Consensus       108 -g~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~  172 (346)
                       ..+.+||..+.+-...     ....... ....+.. ++..++.|+.+|         .+..||..+............
T Consensus       313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~  390 (656)
T 1k3i_A          313 EKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS  390 (656)
T ss_dssp             CCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred             cccceEeCCCCCcceeCCCcccccccccc-ccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence             5799999987653221     0000000 0011222 444555555444         467788876654433321000


Q ss_pred             ------CCcceEEEEecCCCCcEEEEEecCC-----------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117          173 ------HRNEVLSVDFHPSDIYRIASCGMDN-----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  235 (346)
Q Consensus       173 ------~~~~v~~~~~~~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
                            ....-.++.|...++++++.|+.++           .|.+||.....-....       ..            .
T Consensus       391 ~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-------~~------------~  451 (656)
T 1k3i_A          391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-------SN------------G  451 (656)
T ss_dssp             TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-------TT------------C
T ss_pred             ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-------cC------------C
Confidence                  0112244444433778888887543           5667776552110000       00            0


Q ss_pred             EeecccceEEEEe-cCCEEEEEeec-----------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117          236 ASVHSNYVDCNRW-LGDFILSKSVD-----------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  303 (346)
Q Consensus       236 ~~~~~~~i~~~~~-~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  303 (346)
                      +......-.++.. .+++++.|+.+           ..+.+||..+.+-       ..+..............+.+++  
T Consensus       452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-------~~~~~~~~~R~~hs~a~ll~dg--  522 (656)
T 1k3i_A          452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-------YKQNPNSIVRVYHSISLLLPDG--  522 (656)
T ss_dssp             CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-------EECCCCSSCCCTTEEEEECTTS--
T ss_pred             CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-------eecCCCCCccccccHhhcCCCc--
Confidence            0000111222333 47888888864           4688999876541       1222222222233345567888  


Q ss_pred             ceEEEEcC
Q 019117          304 NAAAIGNR  311 (346)
Q Consensus       304 ~~l~~~~~  311 (346)
                      ++++.|+.
T Consensus       523 ~v~v~GG~  530 (656)
T 1k3i_A          523 RVFNGGGG  530 (656)
T ss_dssp             CEEEEECC
T ss_pred             EEEecCCC
Confidence            68888874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.32  E-value=0.00043  Score=56.18  Aligned_cols=198  Identities=12%  Similarity=0.040  Sum_probs=108.7

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeec-------
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGI-------  106 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~-------  106 (346)
                      .+..+++.+   .++.++++....++..+|..++. +..+..............+++  ++ +|. +.++-..       
T Consensus        81 ~p~gi~~~~---~~g~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~--d~~~G~-l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           81 RTYDISYNL---QNNQLYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTV--DQRTGI-VYFTDVSTLYDDRG  153 (322)
T ss_dssp             CEEEEEEET---TTTEEEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEE--CTTTCC-EEEEESCSSCCTTC
T ss_pred             CCceEEEcC---CCCcEEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEE--ecCCCE-EEEECCcccccccc
Confidence            467888885   13566666555668888855433 222221111101122344544  48 887 5554322       


Q ss_pred             ----------CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCe--eEEEecccCCC
Q 019117          107 ----------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGI--CILIFAGAGGH  173 (346)
Q Consensus       107 ----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~  173 (346)
                                ++.|..+|..+++...... .......++++| +++.| ++-...+.|.++++....  ....+..   .
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~  228 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---I  228 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---C
T ss_pred             cceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---C
Confidence                      3678888887665433222 223456899999 66644 444566889999987421  1222221   1


Q ss_pred             CcceEEEEecCCCCcEEEEEec----------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec----
Q 019117          174 RNEVLSVDFHPSDIYRIASCGM----------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH----  239 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  239 (346)
                      .+ ...+++++ +++++++...          .+.|..+|... +                       .+..+...    
T Consensus       229 ~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~-----------------------~~~~~~~~~g~~  282 (322)
T 2fp8_A          229 PN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-N-----------------------ILEVIPLPPPFA  282 (322)
T ss_dssp             SS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTS-C-----------------------EEEEEECCTTTT
T ss_pred             CC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCC-C-----------------------EEEEEECCCCCc
Confidence            23 78899998 7776666544          35677777543 1                       11112111    


Q ss_pred             ccceEEEEec-CCEEEEEeecCeEEEEcCCCC
Q 019117          240 SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       240 ~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ...++++.+. +++.++....+.|..+++...
T Consensus       283 ~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          283 GEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred             cccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence            1234555555 445555556788999988644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.31  E-value=0.0011  Score=56.13  Aligned_cols=159  Identities=9%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---C-eE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---G-II  110 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g-~i  110 (346)
                      ....|+|+|. +..+.++++-....|+.++..++.......      .......+++.  ++|+ ++++-...   . .+
T Consensus       140 ~P~gvavd~~-s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~------~~~~P~giavd--~dG~-lyVad~~~~~~~~gv  209 (433)
T 4hw6_A          140 NIWRMMFDPN-SNYDDLYWVGQRDAFRHVDFVNQYVDIKTT------NIGQCADVNFT--LNGD-MVVVDDQSSDTNTGI  209 (433)
T ss_dssp             CCCEEEECTT-TTTCEEEEECBTSCEEEEETTTTEEEEECC------CCSCEEEEEEC--TTCC-EEEEECCSCTTSEEE
T ss_pred             CCceEEEccc-cCCCEEEEEeCCCCEEEEECCCCEEEEeec------CCCCccEEEEC--CCCC-EEEEcCCCCcccceE
Confidence            4568899872 002555555444459999976655433322      22334455554  8998 66655421   1 23


Q ss_pred             EEEEccCccee-eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc-
Q 019117          111 RVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-  188 (346)
Q Consensus       111 ~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  188 (346)
                      ...+...+... ..+. .-.....+++.|.++.++++-..++.|..+|..++.....+... +.......++|+| +++ 
T Consensus       210 ~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dp-dG~~  286 (433)
T 4hw6_A          210 YLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHP-TGDW  286 (433)
T ss_dssp             EEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECT-TSSE
T ss_pred             EEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeC-CCCE
Confidence            33333222110 1222 23345678888845555556556788999998877653332211 1223345799999 666 


Q ss_pred             EEEEEecCCeEEEEEccc
Q 019117          189 RIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~  206 (346)
                      ++++-...+.|..+++..
T Consensus       287 LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             EEEEETTTTEEEEEEBCT
T ss_pred             EEEEeCCCCEEEEEeCCC
Confidence            556666678899988763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.22  E-value=0.0013  Score=53.06  Aligned_cols=199  Identities=10%  Similarity=0.150  Sum_probs=117.1

Q ss_pred             EEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEE--cCCCCc--EEEEe-ec--CCeE
Q 019117           38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC--NVDGIP--FLVAG-GI--NGII  110 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--~l~~~-~~--dg~i  110 (346)
                      ++-.+|.++....++++.-.+++.+||+ +++.+..+..       +.+..+.+.+  ...|+.  ++++. ..  +++|
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l  101 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence            4556676665555666666666999998 7887776641       2333344332  123331  22333 33  5789


Q ss_pred             EEEEcc--Ccceeeeecc------CC-CceEEEEE--eCCCCc-eEEEeeCCCCEEEEecC-------CCeeEEEecccC
Q 019117          111 RVIDVS--NEKLHKSFVG------HG-DSINEIRT--QPLKPS-LVVSASKDESVRLWNVQ-------TGICILIFAGAG  171 (346)
Q Consensus       111 ~iwd~~--~~~~~~~~~~------~~-~~v~~~~~--~~~~~~-~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~  171 (346)
                      .+|++.  +++ +..+..      .. ..+..+++  +|..+. ++++...+|.+..|++.       +.+.++.+.   
T Consensus       102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---  177 (355)
T 3amr_A          102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---  177 (355)
T ss_dssp             EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---
T ss_pred             EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---
Confidence            999773  333 433311      11 45666777  663343 67788888999999983       346677776   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE--eecccceEEEEec
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL  249 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~  249 (346)
                       ..+.+..+...+ ....|+.+-++.-|..++.+.....                  ....+...  ..-...+..|+..
T Consensus       178 -lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~------------------~~~~v~~~~~g~l~aDvEGLai~  237 (355)
T 3amr_A          178 -MNSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGS------------------NGTVIDRADGRHLTRDIEGLTIY  237 (355)
T ss_dssp             -CSSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCS------------------CCEEEEEBSSSSBCSCEEEEEEE
T ss_pred             -CCCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCC------------------CceEEEEecCCccccCcceEEEE
Confidence             556888999997 7778888888866655554431100                  00111111  1111245555552


Q ss_pred             ----CC-EEEEEe-ecCeEEEEcCC
Q 019117          250 ----GD-FILSKS-VDNEIVLWEPK  268 (346)
Q Consensus       250 ----~~-~l~~~~-~d~~i~iwd~~  268 (346)
                          ++ +|++++ .+++..+||..
T Consensus       238 ~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          238 YAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEECC
Confidence                33 666665 57899999996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.17  E-value=0.0014  Score=52.40  Aligned_cols=162  Identities=9%  Similarity=0.071  Sum_probs=100.1

Q ss_pred             eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC--CccceEEEEEEE---cCCCCcEEEEee----
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED--KEESFYTVSWAC---NVDGIPFLVAGG----  105 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~---~~~~~~~l~~~~----  105 (346)
                      --+++|.+   .++.++++.-..+ |..|+...+.... + .+....  .........+.+   .++++ ++++..    
T Consensus        15 PE~~~wd~---~~g~~~vs~l~~g~V~~~~~~~~~~~~-~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~a   88 (334)
T 2p9w_A           15 PEDTIYDR---TRQVFYQSNLYKGRIEVYNPKTQSHFN-V-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKS   88 (334)
T ss_dssp             CSCEEEET---TTTEEEEEETTTTEEEEECTTTCCEEE-E-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTT
T ss_pred             CcCccCcC---CCCEEEEEeccCCEEEEEcCCCCeEEE-E-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccccc
Confidence            34678886   2345555554555 9999976444332 2 221100  122233344455   47776 666543    


Q ss_pred             ---------cCCeEEEEEcc---Ccceeeeec--cC-----------CCceEEEEEeCCCCceEEEeeCC-CCEEEEecC
Q 019117          106 ---------INGIIRVIDVS---NEKLHKSFV--GH-----------GDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQ  159 (346)
Q Consensus       106 ---------~dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~  159 (346)
                               .+..|..+|+.   +++.+....  ..           .....+++..+ +++..++++.. +.|...+..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence                     26789999998   777665442  11           12478999999 88888888887 777777765


Q ss_pred             CCeeEEEecc-c--CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          160 TGICILIFAG-A--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       160 ~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                       ++.+..+.. .  .......+.|+++| ++++|++....|.+..+|+..
T Consensus       168 -G~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 -GKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -SCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             -CCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence             333333221 0  01223467999999 777777776699999999884

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.12  E-value=2.4e-05  Score=70.51  Aligned_cols=159  Identities=9%  Similarity=-0.026  Sum_probs=89.6

Q ss_pred             CceEEEEEEeecCCCccEEEEE-cCCc-EEEEEecc----CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           34 RPLYAVVFNFIDSRYFNVFATV-GGNR-VTVYQCLE----GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~-~~~~-v~i~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ..+..|+|.+    .+..|..+ ...+ |..+++..    ......+..     .......+++  ++.+..++++-...
T Consensus       406 ~~p~gla~d~----~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-----~~~~P~glav--D~~~g~LY~tD~~~  474 (699)
T 1n7d_A          406 RNVVALDTEV----ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAV--DWIHSNIYWTDSVL  474 (699)
T ss_dssp             TTCCCCEEET----TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-----CC--CCCEEC--CCSSSBCEECCTTT
T ss_pred             cceEEEcccc----ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-----CCCCcceEEE--EeeCCcEEEEeccC
Confidence            3456788887    33444444 3333 88888764    111111110     0111222443  34443255665667


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      +.|.++++........+.........|++.|.++.++++-... +.|.++++.. .....+..  ..-...+.|+|+|.+
T Consensus       475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~--~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT--ENIQWPNGITLDLLS  551 (699)
T ss_dssp             SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESC--SSCSSCCCEEECTTT
T ss_pred             CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEe--CCCCCccEEEEeccC
Confidence            8899999875543333333334567889998445555544333 6788887753 33333321  123456789999855


Q ss_pred             CcEEEEEecCCeEEEEEccc
Q 019117          187 IYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~  206 (346)
                      +.++++-...+.|..+++..
T Consensus       552 ~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          552 GRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCEEEEETTTTEEEEECSSS
T ss_pred             CEEEEEecCCCeEEEEccCC
Confidence            67677767778899999865

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.12  E-value=0.0019  Score=51.72  Aligned_cols=233  Identities=12%  Similarity=0.064  Sum_probs=115.4

Q ss_pred             ccEEEEEc-CC------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-----CeEEEEEcc
Q 019117           49 FNVFATVG-GN------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVS  116 (346)
Q Consensus        49 ~~~la~~~-~~------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  116 (346)
                      +.+++.|+ .+      .+.+||..+.+- ..+.....  .... . .+..  .+++ +++.|+.+     ..+.+||+.
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~--~r~~-~-~~~~--~~~~-l~v~GG~~~~~~~~~~~~~d~~   86 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITR--KRRY-V-ASVS--LHDR-IYVIGGYDGRSRLSSVECLDYT   86 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSS--CCBS-C-EEEE--ETTE-EEEECCBCSSCBCCCEEEEETT
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCCh--hhcc-c-cEEE--ECCE-EEEEcCCCCCccCceEEEEECC
Confidence            46677776 22      388888766542 22222111  1111 1 1122  3455 77777754     468899987


Q ss_pred             Ccc---e--eeeeccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          117 NEK---L--HKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       117 ~~~---~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      +.+   -  +..+.........+.+   ++.+++.|+.++     .+.+||+.+.+-...-... ...... +++..  +
T Consensus        87 ~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~~--~  159 (301)
T 2vpj_A           87 ADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-TAREGA-GLVVA--S  159 (301)
T ss_dssp             CCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS-SCCBSC-EEEEE--T
T ss_pred             CCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC-CCcccc-eEEEE--C
Confidence            765   2  2222221222222222   567777776543     5888998876543322111 111112 22222  5


Q ss_pred             CcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec--
Q 019117          187 IYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD--  259 (346)
Q Consensus       187 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d--  259 (346)
                      +.+++.|+.+     ..+.+||+.+..-....                     .+......-.++.+.+.+++.|+.+  
T Consensus       160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~i~v~GG~~~~  218 (301)
T 2vpj_A          160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---------------------PMATKRSGAGVALLNDHIYVVGGFDGT  218 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCcEEeCC---------------------CCCcccccceEEEECCEEEEEeCCCCC
Confidence            6777777765     35788888763211110                     0000001112233346667777664  


Q ss_pred             ---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCccee
Q 019117          260 ---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLI  328 (346)
Q Consensus       260 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~  328 (346)
                         ..+.+||+.+.+-       ..+..+.......  .+...++  .+++.|+.+     ..+.+||+++.+-...
T Consensus       219 ~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSW-------TTVTSMTTPRCYV--GATVLRG--RLYAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             SBCCCEEEEETTTTEE-------EEECCCSSCCBSC--EEEEETT--EEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             cccceEEEEeCCCCcE-------EECCCCCCcccce--eEEEECC--EEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence               4688999887641       1122222111111  1223355  577777655     4688999988764433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.06  E-value=0.0051  Score=54.67  Aligned_cols=233  Identities=9%  Similarity=-0.016  Sum_probs=124.7

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-eeeeccCC
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVGHG  128 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~  128 (346)
                      .+|+-+....|+..++........+..    ........+++.  +.+..++++-...+.|..++++.... ...+...-
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~----~~~~~~~~ld~~--~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~   83 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVV----GGLEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL   83 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------C----BCCSCEEEEEEE--TTTTEEEEEETTTTEEEEEEC-----CEEEECSSC
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEE----cCCCceEEEEEE--eCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC
Confidence            356666667788888765421111110    012234445554  65552444545568899998875532 22333333


Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcccc
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEF  207 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~  207 (346)
                      .....+++.+.+++++++-...+.|.+.++........+.   ..-.....|+++|.++.++++-- ..+.|...++...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence            5688999998556666676778899999987443322232   23456789999984565555542 2456766666541


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQK  284 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  284 (346)
                      .                       ........-.....|+++  ++.| ++-...+.|..+|+.......      ..  
T Consensus       161 ~-----------------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------~~--  209 (619)
T 3s94_A          161 S-----------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------VV--  209 (619)
T ss_dssp             S-----------------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------
T ss_pred             c-----------------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------EE--
Confidence            1                       011111122345667776  4444 444556789999987643211      11  


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                       ........++++..+   .++.+-...+.|...|..+++..
T Consensus       210 -~~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          210 -KGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             -------CCCEEESSS---EEEEECTTTCSEEEEESSSCCCC
T ss_pred             -eCCCCCceEEEEeCC---EEEEecCCCCEEEEEECCCCccc
Confidence             111122345666543   35666667788999998887643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=0.0026  Score=53.82  Aligned_cols=151  Identities=11%  Similarity=0.067  Sum_probs=87.0

Q ss_pred             EEEEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-CC----CEEEEecCC
Q 019117           87 YTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DE----SVRLWNVQT  160 (346)
Q Consensus        87 ~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~  160 (346)
                      ..+++.  | ++. .|+.+...+.|+.+|+..++...... .......++|++ +++.|+.+.. ++    .+...+. .
T Consensus       140 ~~lavd--p~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          140 VWLSFD--PKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             CEEEEE--TTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CEEEEC--CCCCC-eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence            345554  6 344 56665555889999987766444333 455678999999 7774544443 22    2333332 3


Q ss_pred             CeeE--EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          161 GICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       161 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      +...  ..+.    .......++++|.++.++++-..++.|..++.......                     .+.... 
T Consensus       214 g~~~~~~~l~----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---------------------~~~~~~-  267 (430)
T 3tc9_A          214 SGFKVITELT----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---------------------PLFTIQ-  267 (430)
T ss_dssp             GTSCSEEEEE----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---------------------EEEECS-
T ss_pred             Cceeeeeeec----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------------EEEEcC-
Confidence            3222  2222    12345678899856777777667789999998752210                     011111 


Q ss_pred             cccceEEEEec--CCE-EEEEeecCeEEEEcCCC
Q 019117          239 HSNYVDCNRWL--GDF-ILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       239 ~~~~i~~~~~~--~~~-l~~~~~d~~i~iwd~~~  269 (346)
                      ....-..++++  +++ +++-...+.|..++.+.
T Consensus       268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            11235567777  774 44445678899987653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.97  E-value=0.0083  Score=53.40  Aligned_cols=200  Identities=8%  Similarity=-0.092  Sum_probs=115.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..+..|+|++   .++.++.+-..++ |..+++........+..     .......+++.  +.+.++.++-...+.|.+
T Consensus        37 ~~~~~l~~d~---~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-----g~~~P~GlAvD--~~~~~LY~tD~~~~~I~v  106 (628)
T 4a0p_A           37 KEASALDFDV---TDNRIYWTDISLKTISRAFMNGSALEHVVEF-----GLDYPEGMAVD--WLGKNLYWADTGTNRIEV  106 (628)
T ss_dssp             SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSCCCEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEEC---CCCEEEEEECCCCeEEEEECCCCCcEEEEeC-----CCCCcceEEEE--eCCCEEEEEECCCCEEEE
Confidence            4577999998   2355666655555 88887654333222221     11223345554  555536666666789999


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      .+++.......+...-.....|++.|..+.++++- +..+.|...++.... ...+.   ..-.....|++++.++.+++
T Consensus       107 ~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~---~~~~~P~GlalD~~~~~LY~  182 (628)
T 4a0p_A          107 SKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV---PNVGRANGLTIDYAKRRLYW  182 (628)
T ss_dssp             EETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE---CSCSSEEEEEEETTTTEEEE
T ss_pred             EecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE---CCCCCcceEEEccccCEEEE
Confidence            99875443222323445678999999445444443 235677777776433 33333   24567889999984455555


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEe-ecCeEEEEcCCCC
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS-VDNEIVLWEPKMK  270 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~  270 (346)
                      +-...+.|..+|+.....                        ..+.........+++.++.+.... ..+.|...|..++
T Consensus       183 aD~~~~~I~~~d~dG~~~------------------------~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          183 TDLDTNLIESSNMLGLNR------------------------EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EETTTTEEEEEETTSCSC------------------------EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCEEEEEcCCCCce------------------------EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence            556677899999876211                        111112223345665544444443 4677888886665


Q ss_pred             C
Q 019117          271 E  271 (346)
Q Consensus       271 ~  271 (346)
                      +
T Consensus       239 ~  239 (628)
T 4a0p_A          239 Q  239 (628)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.95  E-value=0.0046  Score=49.63  Aligned_cols=232  Identities=9%  Similarity=0.019  Sum_probs=115.8

Q ss_pred             ccEEEEEcCC---cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC----CeEEEEEccCccee
Q 019117           49 FNVFATVGGN---RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSNEKLH  121 (346)
Q Consensus        49 ~~~la~~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  121 (346)
                      +.+++.|+.+   .+.+||..+++-. .+.....  .... . .+..  .+++ +++.|+.+    ..+.+||+.+.+-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~--~r~~-~-~~~~--~~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFE--KRRD-A-ACVF--WDNV-VYILGGSQLFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEE-ECCCCSC--CCBS-C-EEEE--ETTE-EEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEe-cCCCCCc--ccce-e-EEEE--ECCE-EEEEeCCCCCCcceEEEEeCCCCeEE
Confidence            3566667654   3899997765432 2222111  1111 1 1122  3455 77777754    67889998876532


Q ss_pred             --eeeccCCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117          122 --KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       122 --~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                        ..+.........+.+   ++.+++.|+.+      ..+.+||+.+.+-...-... ...... +++..  ++.+++.|
T Consensus        84 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~~--~~~iyv~G  156 (306)
T 3ii7_A           84 SKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-TQRCSH-GMVEA--NGLIYVCG  156 (306)
T ss_dssp             EEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-SCCBSC-EEEEE--TTEEEEEC
T ss_pred             ECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-CCccee-EEEEE--CCEEEEEC
Confidence              222221222222222   56777777765      45889999877543321110 111111 22232  56677777


Q ss_pred             ec---------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec-----
Q 019117          194 GM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-----  259 (346)
Q Consensus       194 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----  259 (346)
                      +.         -..+.+||+.+..-....                     .+......-..+.+.+.+++.|+.+     
T Consensus       157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~  215 (306)
T 3ii7_A          157 GSLGNNVSGRVLNSCEVYDPATETWTELC---------------------PMIEARKNHGLVFVKDKIFAVGGQNGLGGL  215 (306)
T ss_dssp             CEESCTTTCEECCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCEETTEEB
T ss_pred             CCCCCCCcccccceEEEeCCCCCeEEECC---------------------CccchhhcceEEEECCEEEEEeCCCCCCCC
Confidence            64         245788888773211110                     0000001112223336667777654     


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCcce
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVL  327 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  327 (346)
                      ..+.+||+.+.+-       ..+..+.........+.+  ++  .+++.|+.+     ..+.+||+.+.+-..
T Consensus       216 ~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~--~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          216 DNVEYYDIKLNEW-------KMVSPMPWKGVTVKCAAV--GS--IVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             CCEEEEETTTTEE-------EECCCCSCCBSCCEEEEE--TT--EEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             ceEEEeeCCCCcE-------EECCCCCCCccceeEEEE--CC--EEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            4588899887541       122222222222222222  45  577777744     468999998876443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.93  E-value=0.0035  Score=50.19  Aligned_cols=229  Identities=11%  Similarity=0.094  Sum_probs=111.7

Q ss_pred             ccEEEEEcCC-----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-----CeEEEEEccCc
Q 019117           49 FNVFATVGGN-----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVSNE  118 (346)
Q Consensus        49 ~~~la~~~~~-----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  118 (346)
                      +.+++.|+.+     .+.+||..+.. ...+.....  .... ..+ ..  .+++ +++.|+.+     ..+.+||..+.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~--~r~~-~~~-~~--~~~~-lyv~GG~~~~~~~~~~~~~d~~~~   87 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPS--RRCR-AGM-VY--MAGL-VFAVGGFNGSLRVRTVDSYDPVKD   87 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSS--CCBS-CEE-EE--ETTE-EEEESCBCSSSBCCCEEEEETTTT
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCc--cccc-ceE-EE--ECCE-EEEEeCcCCCccccceEEECCCCC
Confidence            3566666542     38888877654 333322111  1111 112 22  2455 77777654     35888998776


Q ss_pred             cee--eeeccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          119 KLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       119 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      +-.  ..+.........+.+   ++.+++.|+.++     .+.+||+.+.+-...-.. ...... .+++..  ++.+++
T Consensus        88 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~-~~~~~~--~~~iyv  160 (302)
T 2xn4_A           88 QWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSS-VGVGVV--GGLLYA  160 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBS-CEEEEE--TTEEEE
T ss_pred             ceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccC-ceEEEE--CCEEEE
Confidence            522  222221122222222   467777777553     477888877654332111 111111 223333  566777


Q ss_pred             EEecC-------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec-----
Q 019117          192 SCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-----  259 (346)
Q Consensus       192 s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----  259 (346)
                      .|+.+       ..+.+||+.+..-....                     .+......-..+.+.+.+++.|+.+     
T Consensus       161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  219 (302)
T 2xn4_A          161 VGGYDVASRQCLSTVECYNATTNEWTYIA---------------------EMSTRRSGAGVGVLNNLLYAVGGHDGPLVR  219 (302)
T ss_dssp             ECCEETTTTEECCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCBSSSSBC
T ss_pred             EeCCCCCCCccccEEEEEeCCCCcEEECC---------------------CCccccccccEEEECCEEEEECCCCCCccc
Confidence            77653       34788888763211110                     0000001112233346677777664     


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC-----cEEEEEcCCCC
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-----KIFVWELQSSP  324 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-----~i~iwd~~~~~  324 (346)
                      ..+.+||+.+.+-       ..+..+......- . +...++  .+++.|+.++     .+.+||+.+.+
T Consensus       220 ~~~~~yd~~~~~W-------~~~~~~~~~r~~~-~-~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          220 KSVEVYDPTTNAW-------RQVADMNMCRRNA-G-VCAVNG--LLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCEEEEETTTTEE-------EEECCCSSCCBSC-E-EEEETT--EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ceEEEEeCCCCCE-------eeCCCCCCccccC-e-EEEECC--EEEEECCcCCCcccccEEEEcCCCCe
Confidence            3688999877541       1121121111111 1 222355  5777777553     48999998765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.83  E-value=0.023  Score=54.24  Aligned_cols=179  Identities=15%  Similarity=0.134  Sum_probs=104.4

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEE-EcCCCCcEEEEee----------cCCeEEEEEccCcceeeee-ccC
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA-CNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSF-VGH  127 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~~  127 (346)
                      |++.|..+.+.+..   +... ..+.+.+++.. +..+.+.+|++|.          ..|.|.+|++..++..... ...
T Consensus       809 i~lidp~t~~~i~~---~~l~-~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v  884 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHA---HQFL-QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV  884 (1158)
T ss_dssp             EEEEETTTCCEEEE---EECC-TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEeCCCCeEEEE---EeCC-CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence            55555444443322   2222 34555555543 3333344888886          3588999999755432221 124


Q ss_pred             CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      .++|++++--.  +.++++.  ..+|++|++...+.+. ...  .+-..|..+.... .+++++.|..-..|.++..+..
T Consensus       885 ~g~v~al~~~~--g~Lla~i--g~~l~vy~l~~~~~L~-~~~--~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~  956 (1158)
T 3ei3_A          885 KGAVYSMVEFN--GKLLASI--NSTVRLYEWTTEKELR-TEC--NHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPM  956 (1158)
T ss_dssp             SSCEEEEEEET--TEEEEEE--TTEEEEEEECTTSCEE-EEE--EECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETT
T ss_pred             CCcCEEEeeeC--CEEEEEc--CCEEEEEECCCCceEE-EEe--eccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcC
Confidence            67888887653  4444433  3789999998665444 110  1111133222222 3567888888777777655431


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCC
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~  270 (346)
                      ..                    ......-..++.+++++.+- .+.++.+..+|.+.+......
T Consensus       957 ~~--------------------~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          957 EG--------------------NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             TT--------------------EEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred             CC--------------------eEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence            11                    22233334567788888885 778888999999999987653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.71  E-value=0.012  Score=47.09  Aligned_cols=169  Identities=10%  Similarity=-0.006  Sum_probs=100.2

Q ss_pred             eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE-eccc---CCCCcceEEEEe---cCCCCcEEEEEe--
Q 019117          124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGA---GGHRNEVLSVDF---HPSDIYRIASCG--  194 (346)
Q Consensus       124 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~---~~~~~~v~~~~~---~~~~~~~l~s~~--  194 (346)
                      +........+++|.+.++.++++.-..++|..||...+..... +...   ......+..|.|   .| ++.++++..  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence            3334445568899884444444444789999999975543333 2210   011224689999   68 677777543  


Q ss_pred             -----------cCCeEEEEEcc---ccceeeeeceeecCCCCCCCCccceeceEEEe--ec-----------ccceEEEE
Q 019117          195 -----------MDNTVKIWSMK---EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VH-----------SNYVDCNR  247 (346)
Q Consensus       195 -----------~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~i~~~~  247 (346)
                                 .+..|..||+.   +.+                       .+....  ..           ......++
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~-----------------------~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSK-----------------------PVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCC-----------------------CSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCC-----------------------EEEEecCccccccccccccccccCCceeE
Confidence                       26789999998   422                       111111  10           11355666


Q ss_pred             ec--CCEEEEEeec-CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          248 WL--GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       248 ~~--~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .+  |+..++++.. +.|...+.+........    ............+.|+++|++  .+|++...+|.|..+|+.+
T Consensus       144 vD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~----~~~~~~~~~~G~nGIv~~pdg--~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          144 QDRDGNSYVAFALGMPAIARVSADGKTVSTFA----WESGNGGQRPGYSGITFDPHS--NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECTTSCEEEEEEESSCEEEEECTTSCCEEEEE----ECCCCSSSCCSCSEEEEETTT--TEEEEESSSSSEEEEECSS
T ss_pred             ECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee----ecCCCcccccCcceEEEeCCC--CEEEEEcCCCeEEEEcCCC
Confidence            66  8888888888 88877777654210000    000001122346789999999  5666665599999999874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.68  E-value=0.014  Score=47.28  Aligned_cols=253  Identities=9%  Similarity=0.007  Sum_probs=122.2

Q ss_pred             cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .-..++....  .....+.+|.|.+    .+..++++. .+..+.....++....+.. ........+..+.+.  + +.
T Consensus        23 ~g~~W~~~~~--~~~~~~~~v~~~~----~~~~~~~G~-~g~i~~s~DgG~tW~~~~~-~~~~~~~~~~~i~~~--~-~~   91 (327)
T 2xbg_A           23 DYNPWEAIQL--PTTATILDMSFID----RHHGWLVGV-NATLMETRDGGQTWEPRTL-VLDHSDYRFNSVSFQ--G-NE   91 (327)
T ss_dssp             SSCCEEEEEC--SCSSCEEEEEESS----SSCEEEEET-TTEEEEESSTTSSCEECCC-CCSCCCCEEEEEEEE--T-TE
T ss_pred             CCCCceEeec--CCCCcEEEEEECC----CCcEEEEcC-CCeEEEeCCCCCCCeECCC-CCCCCCccEEEEEec--C-Ce
Confidence            3455654432  2345799999875    456777664 4433333333443333321 111123356666653  5 43


Q ss_pred             cEEEEeecCCeEEEEEccCcceeeeec---cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117           99 PFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  175 (346)
Q Consensus        99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  175 (346)
                       .++ ++..+.|.. ..+.++.-..+.   .+.+.+..+.+.+ ++..++.+ .++.|.. ....++.-.....  ....
T Consensus        92 -~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~--~~~~  163 (327)
T 2xbg_A           92 -GWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQ--EAIG  163 (327)
T ss_dssp             -EEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEEC--SCCC
T ss_pred             -EEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeec--CCCc
Confidence             444 455665443 223343222221   2335577888776 55555554 4565432 2223444333332  3456


Q ss_pred             ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEE
Q 019117          176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFIL  254 (346)
Q Consensus       176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~  254 (346)
                      .+..+++.| ++.+++.+...+..+-.|-.. ..                    -.++  .......+..+.+. ...++
T Consensus       164 ~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG-~t--------------------W~~~--~~~~~~~~~~~~~~~~g~~~  219 (327)
T 2xbg_A          164 VMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQ-TA--------------------WEPH--NRTTSRRLHNMGFTPDGRLW  219 (327)
T ss_dssp             CEEEEEECT-TSCEEEEETTSSEEEEECTTC-SS--------------------CEEE--ECCSSSCEEEEEECTTSCEE
T ss_pred             ceEEEEEcC-CCcEEEEECCCcEEEEeCCCC-Cc--------------------eeEC--CCCCCCccceeEECCCCCEE
Confidence            788999998 777666654433333333211 00                    0000  11233456666665 33455


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccccccccc-cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      .++.+|.+++.+.+.++.      ...+..- ......+..+.+.+++  .+++++. +|.| ++....++
T Consensus       220 ~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~--~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          220 MIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPN--EVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             EEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSS--CEEEEES-TTCE-EEESSTTS
T ss_pred             EEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCC--EEEEEeC-CCeE-EEeCCCCc
Confidence            566678877764332221      0011100 0112357888888776  4555544 6766 44444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.67  E-value=0.012  Score=47.17  Aligned_cols=232  Identities=10%  Similarity=0.053  Sum_probs=113.2

Q ss_pred             CccEEEEEcC-----CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----C-----CeEEEE
Q 019117           48 YFNVFATVGG-----NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----N-----GIIRVI  113 (346)
Q Consensus        48 ~~~~la~~~~-----~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----d-----g~i~iw  113 (346)
                      ++.+++.|+.     +.+.+||..+.+- ..+.....   ...-..++ .  .+++ +++.|+.    +     ..+.+|
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~---~r~~~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~~~~~   95 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW-LRLADLQV---PRSGLAGC-V--VGGL-LYAVGGRNNSPDGNTDSSALDCY   95 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEE-EECCCCSS---CCBSCEEE-E--ETTE-EEEECCEEEETTEEEECCCEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeE-eECCCCCc---ccccceEE-E--ECCE-EEEECCCcCCCCCCeecceEEEE
Confidence            3467777763     2388999766543 22222111   11111122 2  3455 6777765    2     468889


Q ss_pred             EccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          114 DVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       114 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      |+.+.+-.  ..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+-...-... ...... +++..  +
T Consensus        96 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~~--~  168 (308)
T 1zgk_A           96 NPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-TRRIGV-GVAVL--N  168 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-SCCBSC-EEEEE--T
T ss_pred             CCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-ccccce-EEEEE--C
Confidence            98776422  222221222222322   45677777643     35888998876533221110 111122 22232  5


Q ss_pred             CcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec--
Q 019117          187 IYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD--  259 (346)
Q Consensus       187 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d--  259 (346)
                      +.+++.|+.+     ..+.+||+.+..-.        ..+.             +......-.++.+.+.+++.|+.+  
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--------~~~~-------------~p~~r~~~~~~~~~~~iyv~GG~~~~  227 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWR--------MITA-------------MNTIRSGAGVCVLHNCIYAAGGYDGQ  227 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEE--------ECCC-------------CSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEe--------eCCC-------------CCCccccceEEEECCEEEEEeCCCCC
Confidence            6777777664     35788888763211        1100             000011112233346667777664  


Q ss_pred             ---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCcc
Q 019117          260 ---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPV  326 (346)
Q Consensus       260 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  326 (346)
                         ..+.+||+.+.+-       ..+..+....... +++ ..++  .+++.|+.+     ..+.+||+.+.+-.
T Consensus       228 ~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~-~~~-~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          228 DQLNSVERYDVETETW-------TFVAPMKHRRSAL-GIT-VHQG--RIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             SBCCCEEEEETTTTEE-------EECCCCSSCCBSC-EEE-EETT--EEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CccceEEEEeCCCCcE-------EECCCCCCCccce-EEE-EECC--EEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence               5688999887641       1122222111111 122 2345  577777643     45888998876543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.62  E-value=0.032  Score=49.62  Aligned_cols=232  Identities=7%  Similarity=-0.079  Sum_probs=125.6

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .+|+.+....|+..++............   ..-..+.  ++.+++.+..++++-...+.|..++++.......+...-.
T Consensus       318 ~~Ll~~~~~~i~~i~l~~~~~~~~~~~~---~~l~~~~--~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~  392 (619)
T 3s94_A          318 ELLLLARRTDLRRISLDTPDFTDIVLQL---EDIRHAI--AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA  392 (619)
T ss_dssp             EEEEEEESSCEEEEESSSTTCCCEECCC---SCCSSEE--EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             eEEEEEcccceEEEecCCCccceeEEec---cccCccE--EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence            3555555555777776554322111110   0112333  4444465442555555678899999876443333333335


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccc
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFW  208 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~  208 (346)
                      ....+++...+++++++-+..+.|.+.++... ....+..  ..-...++++++|..+.++++-. ....|...++....
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~  469 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD  469 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc
Confidence            66788888645667777677789999998744 3333321  23457899999994566555542 23567666665411


Q ss_pred             eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccccccc
Q 019117          209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKY  285 (346)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  285 (346)
                                             ........-.....|+++  ++.|..+ +..+.|..++++.....       .+.  
T Consensus       470 -----------------------~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~-------~~~--  517 (619)
T 3s94_A          470 -----------------------RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR-------VLV--  517 (619)
T ss_dssp             -----------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------EEE--
T ss_pred             -----------------------cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE-------EEe--
Confidence                                   001111122345566666  4455544 44578888888654310       111  


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ...-....+++...+   .+..+-...+.|...|..++.
T Consensus       518 ~~~l~~P~glav~~~---~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          518 EDKIPHIFGFTLLGD---YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             ECCCCSSCCEEEETT---EEEEECTTSSCEEEEESSSCC
T ss_pred             ccCCCCcEEEEEECC---EEEEeecCCCeEEEEEcCCCc
Confidence            111112334555432   355555566777777777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.61  E-value=0.019  Score=47.12  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             CccEEEEEcCCc--EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-C---------CeEEEEE
Q 019117           48 YFNVFATVGGNR--VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-N---------GIIRVID  114 (346)
Q Consensus        48 ~~~~la~~~~~~--v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-d---------g~i~iwd  114 (346)
                      ++.+++.|+.++  +.+||..+ ......+...... .... .+++ .  .+++ +++.|+. +         ..+.+||
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~-~R~~-~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~~v~~yd   92 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGG-PRDQ-ATSA-F--IDGN-LYVFGGIGKNSEGLTQVFNDVHKYN   92 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTC-CCBS-CEEE-E--ETTE-EEEECCEEECTTSCEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCC-cCcc-ceEE-E--ECCE-EEEEcCCCCCCCccceeeccEEEEe
Confidence            357777777544  88999764 2333333322100 1111 1122 2  2455 6666665 2         4688899


Q ss_pred             ccCccee--eeec-cCCCceEEEEEeCCCCceEEEeeCC
Q 019117          115 VSNEKLH--KSFV-GHGDSINEIRTQPLKPSLVVSASKD  150 (346)
Q Consensus       115 ~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d  150 (346)
                      +.+.+-.  ..+. .......++.  . ++.+++.|+.+
T Consensus        93 ~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~  128 (357)
T 2uvk_A           93 PKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN  128 (357)
T ss_dssp             TTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred             CCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence            8776422  2222 1111222232  2 66788888754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.59  E-value=0.019  Score=46.21  Aligned_cols=142  Identities=13%  Similarity=0.032  Sum_probs=70.8

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-----C------CeEEEEEccCc
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----N------GIIRVIDVSNE  118 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~  118 (346)
                      .+++.|+ +.+.+||..+++-..  .....  ...........  .+++ +++.|+.     .      ..+.+||..+.
T Consensus         6 ~l~~~GG-~~~~~yd~~~~~W~~--~~~~~--p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            6 LIFMISE-EGAVAYDPAANECYC--ASLSS--QVPKNHVSLVT--KENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEE--EECCC--CSCSSEEEEEC--TTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEEcC-CceEEECCCCCeEec--CCCCC--CCCccceEEEE--ECCE-EEEEcCcccCCCCCccccccceEEecCCCC
Confidence            3455555 569999987766322  21111  11111112222  4566 7777763     1      12778888776


Q ss_pred             cee--eeeccCCCceEEEEEeCCCCceEEEeeCC--------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          119 KLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       119 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +-.  ..+....... +++..  ++.+++.|+.+        ..+.+||+.+.+-.. +.......... +++..  ++.
T Consensus        78 ~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~~--~~~  150 (315)
T 4asc_A           78 EWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGH-TVLSH--MDL  150 (315)
T ss_dssp             EEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEEE--TTE
T ss_pred             eEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccce-eEEEE--CCE
Confidence            522  1222111111 22222  55777777742        458899998765322 22110111112 22233  567


Q ss_pred             EEEEEec-C-----CeEEEEEccc
Q 019117          189 RIASCGM-D-----NTVKIWSMKE  206 (346)
Q Consensus       189 ~l~s~~~-d-----~~i~iwd~~~  206 (346)
                      +++.|+. +     ..+.+||+.+
T Consensus       151 iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          151 VYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             EEEECCBCTTSCBCCCEEEEETTT
T ss_pred             EEEEeCCCCCCcccceEEEEeCCC
Confidence            7777776 2     3688888876

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.59  E-value=0.024  Score=47.15  Aligned_cols=231  Identities=9%  Similarity=0.064  Sum_probs=138.1

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL  139 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  139 (346)
                      |.|.|+..+.....-..          .+=+...+|..+ .+|.-. ..++.|+|+++.+.++.+.- ...|.--+|-. 
T Consensus        50 vvIiDl~~~~~~~rrpi----------~AdsAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis-  115 (494)
T 1bpo_A           50 VVIIDMNDPSNPIRRPI----------SADSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS-  115 (494)
T ss_dssp             EEEEETTSTTSCEEEEC----------CCSEEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEE-
T ss_pred             EEEEECCCCCcceeccc----------ccceeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecC-
Confidence            99999887665422211          111223457776 666554 78999999999988887764 45677888875 


Q ss_pred             CCceEEEeeCCCCEEEEecCC-CeeEEEecccC-CCCcceEEEEecCCCCcEEEEEe-------cCCeEEEEEcccccee
Q 019117          140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY  210 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~  210 (346)
                       .+.|+-.+ +..|+-|++.. ..+.+.+.... -....|..-..++ +.++++..|       -.|.+.+|..+..   
T Consensus       116 -~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~---  189 (494)
T 1bpo_A          116 -LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK---  189 (494)
T ss_dssp             -TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC---
T ss_pred             -CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc---
Confidence             34555444 36799999963 35666665311 1135677777787 666665433       2467888888762   


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC-----EEEEEee---cCeEEEEcCCCC-CCCCCCcc--c
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSKSV---DNEIVLWEPKMK-EQSPGEGT--A  279 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~---d~~i~iwd~~~~-~~~~~~~~--~  279 (346)
                                           ....+.+|...-..+...|+     +++-+..   .+.++|-++... ...+....  .
T Consensus       190 ---------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~v  248 (494)
T 1bpo_A          190 ---------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  248 (494)
T ss_dssp             ---------------------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEE
T ss_pred             ---------------------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceee
Confidence                                 23345555554444444422     3333333   278999998653 11111100  0


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      +....-.....-..++..|+.-  .++..-+.-|.|++||++++..+...++..
T Consensus       249 dv~fppe~~~DFPvamqvs~ky--gviyviTK~G~i~lyDleTgt~i~~nrIs~  300 (494)
T 1bpo_A          249 DVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (494)
T ss_dssp             ECCCCTTSTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             eeeCCcccccCceeEEEecccC--CEEEEEecCceEEEEecccceeeeeecccC
Confidence            0000111123344566677655  578888899999999999999877666554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.58  E-value=0.021  Score=46.37  Aligned_cols=238  Identities=11%  Similarity=-0.009  Sum_probs=117.4

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ...+.+|.|.|     +..++.+. .+ .||...+ ++....+...  ......+..+.+.  +++. .++.+ .+|.|.
T Consensus        79 ~~~~~~i~~~~-----~~~~~~g~-~g-~i~~S~DgG~tW~~~~~~--~~~~~~~~~i~~~--~~~~-~~~~~-~~g~v~  145 (327)
T 2xbg_A           79 DYRFNSVSFQG-----NEGWIVGE-PP-IMLHTTDGGQSWSQIPLD--PKLPGSPRLIKAL--GNGS-AEMIT-NVGAIY  145 (327)
T ss_dssp             CCEEEEEEEET-----TEEEEEEE-TT-EEEEESSTTSSCEECCCC--TTCSSCEEEEEEE--ETTE-EEEEE-TTCCEE
T ss_pred             CccEEEEEecC-----CeEEEEEC-CC-eEEEECCCCCCceECccc--cCCCCCeEEEEEE--CCCC-EEEEe-CCccEE
Confidence            44688999875     35566554 34 2333333 4444433211  0112345555543  5565 55555 455442


Q ss_pred             EEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEE-ecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          112 VIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLW-NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       112 iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      . ..+.++.-.. ...+...+..+.+.+ ++.+++.+. +|.+..- |- .++.-..+..  .....+..+.+.+ ++.+
T Consensus       146 ~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~--~~~~~~~~~~~~~-~g~~  218 (327)
T 2xbg_A          146 R-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQTAWEPHNR--TTSRRLHNMGFTP-DGRL  218 (327)
T ss_dssp             E-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCSSCEEEEC--CSSSCEEEEEECT-TSCE
T ss_pred             E-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCCceeECCC--CCCCccceeEECC-CCCE
Confidence            2 1223332222 223456788999998 666666554 4555433 32 1222222221  3556788999987 6665


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~  268 (346)
                      + .++.+|.+.+.+......       |.....         +  . ..+...+.++.+. ...++.++.++.| ++..+
T Consensus       219 ~-~~~~~G~~~~s~~D~G~t-------W~~~~~---------~--~-~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~D  277 (327)
T 2xbg_A          219 W-MIVNGGKIAFSDPDNSEN-------WGELLS---------P--L-RRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQD  277 (327)
T ss_dssp             E-EEETTTEEEEEETTEEEE-------ECCCBC---------T--T-SSCCSCEEEEEESSSSCEEEEESTTCE-EEESS
T ss_pred             E-EEeCCceEEEecCCCCCe-------eEeccC---------C--c-ccCCcceEEEEecCCCEEEEEeCCCeE-EEeCC
Confidence            4 455678877764221111       100000         0  0 0012245666665 3334444556766 44444


Q ss_pred             CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      .++.      ...+.........+..+.|.+++   .+++++.+|.|.-++-
T Consensus       278 gG~t------W~~~~~~~~~~~~~~~v~~~~~~---~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          278 GGQT------WQQDVDVKKVPSNFYKILFFSPD---QGFILGQKGILLRYVT  320 (327)
T ss_dssp             TTSS------CEECGGGTTSSSCCCEEEEEETT---EEEEECSTTEEEEECC
T ss_pred             CCcc------cEEcCccCCCCCCeEEEEEECCC---ceEEEcCCceEEEEcC
Confidence            4431      11222111123467888888655   4666677898776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.54  E-value=0.021  Score=48.28  Aligned_cols=156  Identities=10%  Similarity=0.043  Sum_probs=86.3

Q ss_pred             ceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC---Ce-EEEEEc
Q 019117          130 SINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NT-VKIWSM  204 (346)
Q Consensus       130 ~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~-i~iwd~  204 (346)
                      ....++|.|+ +...|+.+...+.|+.+|+.+++......    .......+++++ ++.++++....   .. +...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC
Confidence            4568999983 23444444444899999998777654443    456689999998 77755554321   11 222222


Q ss_pred             cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      .....                    .  ...+. .-.....++++   +.+.++-..++.|+.+|..++...      ..
T Consensus       215 ~~~~~--------------------~--~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~------~~  265 (433)
T 4hw6_A          215 ASGFT--------------------E--RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT------EE  265 (433)
T ss_dssp             GGTTC--------------------C--EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE------EE
T ss_pred             CCCee--------------------c--ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE------EE
Confidence            11000                    0  00111 11222334443   455555556788999998765410      01


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +.... ....-..++|+|++. .++++-...+.|+.++..
T Consensus       266 ~~~~~-~~~~~~~ia~dpdG~-~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          266 EVMMD-TKGSNFHIVWHPTGD-WAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEECS-CCSSCEEEEECTTSS-EEEEEETTTTEEEEEEBC
T ss_pred             EeccC-CCCCcccEEEeCCCC-EEEEEeCCCCEEEEEeCC
Confidence            11111 112234699999994 256666677899998865

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.37  E-value=0.043  Score=45.03  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=57.2

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCC---CCcEEEEeec-C-
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVD---GIPFLVAGGI-N-  107 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-d-  107 (346)
                      .....++|.|    +|+++++-..+.|.+++  ++. ...+.... ..........+++.  |+   +. .|+.+.. . 
T Consensus        31 ~~P~~ia~~p----dG~l~V~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~--pdf~~~g-~lYv~~~~~~  100 (352)
T 2ism_A           31 EVPWALAFLP----DGGMLIAERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALH--PRFPQEP-YVYAYRTVAE  100 (352)
T ss_dssp             SCEEEEEECT----TSCEEEEETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEEC--TTTTTSC-EEEEEEEECT
T ss_pred             CCceEEEEcC----CCeEEEEeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEEC--CCCCCCC-EEEEEEecCC
Confidence            4467999998    78888887665588888  333 22222111 01112345555554  87   44 4444432 2 


Q ss_pred             ----CeEEEEEccCcc-----ee-eeec---cCCCceEEEEEeCCCCceEEEee
Q 019117          108 ----GIIRVIDVSNEK-----LH-KSFV---GHGDSINEIRTQPLKPSLVVSAS  148 (346)
Q Consensus       108 ----g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~s~~  148 (346)
                          +.|..++...++     .+ ..+.   ........++|.| ++.++++.+
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence                678888876431     11 2233   1112346899999 776666644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.36  E-value=0.11  Score=49.68  Aligned_cols=175  Identities=13%  Similarity=0.060  Sum_probs=104.3

Q ss_pred             CeEEEEEccCcceeeeecc-CCCceEEEEE---eCCCCceEEEee----------CCCCEEEEecCCCeeEEEecccCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVG-HGDSINEIRT---QPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGH  173 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~---~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~  173 (346)
                      +.|++.|..+.+.+..+.- ....+.+++.   ......+|+.|.          ..|.|.++++..++.....+.  ..
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~--~v  884 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK--EV  884 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE--EE
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE--Ec
Confidence            3577778777776555432 2334455543   322346788775          347899999875443322221  25


Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE-EEeeccc-ceEEEEecCC
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSN-YVDCNRWLGD  251 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~~~~~  251 (346)
                      .++|++++--  ++.+++..  ..+|++|++...+.                       +. ....+.. .+..+...++
T Consensus       885 ~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~-----------------------L~~~~~~~~~i~~~~l~~~~~  937 (1158)
T 3ei3_A          885 KGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKE-----------------------LRTECNHYNNIMALYLKTKGD  937 (1158)
T ss_dssp             SSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSC-----------------------EEEEEEECCCSCEEEEEEETT
T ss_pred             CCcCEEEeee--CCEEEEEc--CCEEEEEECCCCce-----------------------EEEEeeccccEEEEEEeccCC
Confidence            6889998865  45544433  47899999976221                       11 1111111 1234444589


Q ss_pred             EEEEEeecCeEEEEcCCCCCCCCCCccccccccc--cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      +++.|..-..|.+...+....        .+..+  ......++++.|-.+.   .++.+..+|.|.+.....
T Consensus       938 ~I~vgD~~~Sv~~~~y~~~~~--------~L~~~a~D~~~~~vta~~~ld~~---t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          938 FILVGDLMRSVLLLAYKPMEG--------NFEEIARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEESSBCEEEEEEETTTT--------EEEEEEECCSCBCEEEEEEEETT---EEEEEETTSEEEEEEECT
T ss_pred             EEEEEEhhheEEEEEEEcCCC--------eEEEEEeecccccEEEEEEEccC---cEEEEcCCCcEEEEecCC
Confidence            999998877777766543221        11111  2234578888887665   677788999999997765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.24  E-value=0.052  Score=43.28  Aligned_cols=186  Identities=11%  Similarity=0.056  Sum_probs=92.2

Q ss_pred             EEEEee-cC-----CeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCe---e
Q 019117          100 FLVAGG-IN-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGI---C  163 (346)
Q Consensus       100 ~l~~~~-~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~---~  163 (346)
                      +++.|+ .+     ..+.+||+.+.+-.  ..+.........+ ..  ++.+++.|+.+     ..+.+||+.+.+   -
T Consensus        17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV-SL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE-EE--CCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            566666 32     46888998776522  2222211122222 22  56777888755     468899988765   2


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  238 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
                      ... .......... +++..  ++.+++.|+.++     .+.+||+.+..-...                     ..+..
T Consensus        94 ~~~-~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---------------------~~~p~  148 (301)
T 2vpj_A           94 YSV-APMNVRRGLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---------------------GDMQT  148 (301)
T ss_dssp             EEE-CCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE---------------------EECSS
T ss_pred             EEC-CCCCCCccce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEEC---------------------CCCCC
Confidence            222 2110111122 22222  567777776543     577888776321110                     00110


Q ss_pred             cccceEEEEecCCEEEEEeec-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-
Q 019117          239 HSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-  312 (346)
Q Consensus       239 ~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-  312 (346)
                      ....-.++.+.+.+++.|+.+     ..+.+||+.+.+-       ..+..+......-  .+...++  .+++.|+.+ 
T Consensus       149 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-------~~~~~~p~~r~~~--~~~~~~~--~i~v~GG~~~  217 (301)
T 2vpj_A          149 AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW-------TNVTPMATKRSGA--GVALLND--HIYVVGGFDG  217 (301)
T ss_dssp             CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-------EEECCCSSCCBSC--EEEEETT--EEEEECCBCS
T ss_pred             CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE-------EeCCCCCcccccc--eEEEECC--EEEEEeCCCC
Confidence            011112223346666777654     4588889877541       1121222111111  1222344  577777654 


Q ss_pred             ----CcEEEEEcCCCC
Q 019117          313 ----GKIFVWELQSSP  324 (346)
Q Consensus       313 ----g~i~iwd~~~~~  324 (346)
                          ..+.+||+.+.+
T Consensus       218 ~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             SSBCCCEEEEETTTTE
T ss_pred             CcccceEEEEeCCCCc
Confidence                468999998765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.19  E-value=0.062  Score=43.27  Aligned_cols=142  Identities=14%  Similarity=0.053  Sum_probs=68.5

Q ss_pred             EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----CC-------eEEEEEccCcc
Q 019117           51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NG-------IIRVIDVSNEK  119 (346)
Q Consensus        51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~  119 (346)
                      +++.|+ ..+..||..+++-.. .. ...  ...... .+.. ..++. +++.|+.    ++       .+.+||..+.+
T Consensus        18 i~~~GG-~~~~~yd~~~~~W~~-~~-~~~--~~~r~~-~~~~-~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           18 ILLVND-TAAVAYDPMENECYL-TA-LAE--QIPRNH-SSIV-TQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEECS-SEEEEEETTTTEEEE-EE-ECT--TSCSSE-EEEE-CSSSC-EEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             hhhccc-cceEEECCCCCceec-cc-CCc--cCCccc-eEEE-EECCE-EEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            444443 458899987766433 21 111  011111 1222 24566 7777763    12       27778877654


Q ss_pred             eee--eeccCCCceEEEEEeCCCCceEEEeeCC-------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          120 LHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       120 ~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      -..  .+.........+.+   ++.+++.|+.+       ..+.+||+.+.+-...-... ...... +++..  ++.++
T Consensus        90 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~~--~~~iy  162 (318)
T 2woz_A           90 WVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP-IKVYGH-NVISH--NGMIY  162 (318)
T ss_dssp             EEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS-SCEESC-EEEEE--TTEEE
T ss_pred             EEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC-Cccccc-EEEEE--CCEEE
Confidence            222  22211112222222   45677777754       24788888876543321110 111111 22222  56777


Q ss_pred             EEEecC------CeEEEEEcccc
Q 019117          191 ASCGMD------NTVKIWSMKEF  207 (346)
Q Consensus       191 ~s~~~d------~~i~iwd~~~~  207 (346)
                      +.|+.+      ..+.+||+.+.
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTTT
T ss_pred             EEcCCCCCCCccceEEEEcCCCC
Confidence            777642      35888888773

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.13  E-value=0.039  Score=45.76  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=91.4

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--------
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--------  119 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------  119 (346)
                      ++..++.+.++.|+.-++..+...+.+..-. ...-..+..+.  .+|+|+ +||..+ +..|.|-.+..+.        
T Consensus        31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~-~i~f~~i~qlv--lSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSR-HLVLDDTFHVI--SSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTEEEEEETTEEEEEETTTCSSCEEEECTT-TCCCCTTCEEE--ECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred             CCCEEEEEECCEEEEEECCCCCcceEEecCc-ccccCceeEEE--ECCCCC-EEEEec-CCeEEEEEecCccccCccccc
Confidence            4566666666668877776554444443210 00122344444  459999 888876 5688998876321        


Q ss_pred             ----eeeeecc------CCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCC--eeEEEecc------cCCCCcceEE
Q 019117          120 ----LHKSFVG------HGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTG--ICILIFAG------AGGHRNEVLS  179 (346)
Q Consensus       120 ----~~~~~~~------~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~------~~~~~~~v~~  179 (346)
                          ..+.+.-      ...+|..+.|+|..  +..|++-..|+.|++||+...  ++. .+..      .......|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence                1112221      24679999999953  348999999999999999852  222 2321      1123367889


Q ss_pred             EEecCCCCcEEEEEe--cCCeEEEE
Q 019117          180 VDFHPSDIYRIASCG--MDNTVKIW  202 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~--~d~~i~iw  202 (346)
                      ++|.+ ++-.|...+  ..|-|.-.
T Consensus       185 ~~Fg~-~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSK-DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred             EEEcC-CCcEEEEEecCCCCCEEEE
Confidence            99997 776666644  77777543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.11  E-value=0.072  Score=42.47  Aligned_cols=186  Identities=11%  Similarity=0.108  Sum_probs=90.7

Q ss_pred             EEEEeecC----CeEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCeeEEEec
Q 019117          100 FLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFA  168 (346)
Q Consensus       100 ~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~  168 (346)
                      +++.|+.+    ..+.+||+.+.+-..  .++.....- +++..  ++.+++.|+.+     ..+.+||..+.+-...-.
T Consensus        18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            56666543    457888887765222  122111111 22222  56777787754     358889988765333221


Q ss_pred             ccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                       ........ +++..  ++.+++.|+.++     .+.+||+.+..-....                     .+......-
T Consensus        95 -~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~  149 (302)
T 2xn4_A           95 -MRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---------------------PMNTRRSSV  149 (302)
T ss_dssp             -CSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---------------------CCSSCCBSC
T ss_pred             -CCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---------------------CCCCcccCc
Confidence             11111122 22332  567777777653     4667777663211110                     000000111


Q ss_pred             EEEEecCCEEEEEeec-------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC----
Q 019117          244 DCNRWLGDFILSKSVD-------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----  312 (346)
Q Consensus       244 ~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d----  312 (346)
                      .++.+.+.+++.|+.+       ..+.+||+.+.+-       ..+..+....... ++ ...++  .+++.|+.+    
T Consensus       150 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~-~~-~~~~~--~iyv~GG~~~~~~  218 (302)
T 2xn4_A          150 GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW-------TYIAEMSTRRSGA-GV-GVLNN--LLYAVGGHDGPLV  218 (302)
T ss_dssp             EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE-------EEECCCSSCCBSC-EE-EEETT--EEEEECCBSSSSB
T ss_pred             eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-------EECCCCccccccc-cE-EEECC--EEEEECCCCCCcc
Confidence            2223336666666653       3488899876531       1111222111111 12 22345  577777654    


Q ss_pred             -CcEEEEEcCCCC
Q 019117          313 -GKIFVWELQSSP  324 (346)
Q Consensus       313 -g~i~iwd~~~~~  324 (346)
                       ..+.+||+.+++
T Consensus       219 ~~~~~~yd~~~~~  231 (302)
T 2xn4_A          219 RKSVEVYDPTTNA  231 (302)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceEEEEeCCCCC
Confidence             368899988765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.05  E-value=0.096  Score=42.92  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=56.0

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--eeeec---cCCCceEEEEEeCC---CCceEEEeeCC-----CCE
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFV---GHGDSINEIRTQPL---KPSLVVSASKD-----ESV  153 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d-----~~i  153 (346)
                      ..+++.  |+|+ ++++ ..+|.|.+++  +++.  +..+.   ........|+++|+   ++.+.++-...     ..|
T Consensus        34 ~~ia~~--pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           34 WALAFL--PDGG-MLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             EEEEEC--TTSC-EEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             eEEEEc--CCCe-EEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            335554  9998 5554 5569999998  3432  22221   12356789999993   24444444332     568


Q ss_pred             EEEecCCCe-----eE-EEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          154 RLWNVQTGI-----CI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       154 ~iwd~~~~~-----~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      ..++...+.     .+ ..+............++|.| ++.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            888876431     11 11220001112346899999 777777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.03  E-value=0.11  Score=43.18  Aligned_cols=164  Identities=16%  Similarity=0.089  Sum_probs=91.6

Q ss_pred             CCceEEEeeCCCCEEEEecCCCeeEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117          140 KPSLVVSASKDESVRLWNVQTGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  218 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  218 (346)
                      ++..++.+- ++.||.-++.....-+.+.... -.-..|..+..+| +|.+|+..+ +..|.|-.+..........    
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~----  103 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV----  103 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH----
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc----
Confidence            444444433 3677777776444444444210 0123678899999 899888876 4588888887421100000    


Q ss_pred             CCCCCCCCccceeceEEEee------cccceEEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccc--cccc
Q 019117          219 DLPSKFPTKYVQFPVFIASV------HSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI--LQKY  285 (346)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~  285 (346)
                             ........+.+..      ....|..+.|+     +..|++-..|+.|++||+......+. .....  ....
T Consensus       104 -------~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~  175 (452)
T 3pbp_A          104 -------SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGL  175 (452)
T ss_dssp             -------HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEES
T ss_pred             -------ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCC
Confidence                   0000011122221      24668888887     66999999999999999987432221 00000  0122


Q ss_pred             cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117          286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  318 (346)
Q Consensus       286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw  318 (346)
                      ......|.+++|..++-.-|+++.+.+|.|+-.
T Consensus       176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            223467889999997732233345577776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.078  Score=42.93  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=69.8

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEe--CCCCceEEEe-eCCCCEEEEecCCCeeEEEecccC-CCC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQ--PLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG-GHR  174 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~  174 (346)
                      +++.++.||.|.-.|..+|+....++.. ..++....-.  +.++..++.. +.||.|..++..+|.....+.... -..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            7889999999999999999999888754 1222221110  1122334343 689999999998886655443210 011


Q ss_pred             cceEEEEecC--------CCCcEEEEEecCCeEEEEEccccceeee
Q 019117          175 NEVLSVDFHP--------SDIYRIASCGMDNTVKIWSMKEFWTYVE  212 (346)
Q Consensus       175 ~~v~~~~~~~--------~~~~~l~s~~~d~~i~iwd~~~~~~~~~  212 (346)
                      .++.. .-.|        ..+..+++|+.+|.+...|+++++....
T Consensus        92 SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           92 SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             CSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             ccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            22221 1000        0356789999999999999999665443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=0.081  Score=45.27  Aligned_cols=170  Identities=9%  Similarity=-0.047  Sum_probs=90.1

Q ss_pred             eEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe-------cCCCCcEEEEEecCC-----
Q 019117          131 INEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-------HPSDIYRIASCGMDN-----  197 (346)
Q Consensus       131 v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~s~~~d~-----  197 (346)
                      ...|+|.|. +++++++-...+.|++.|+..+..................++|       ++ ++..|+.+...+     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence            568999983 3455555544577999999877665554421112346899999       98 666455554433     


Q ss_pred             --eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCC----
Q 019117          198 --TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPK----  268 (346)
Q Consensus       198 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~----  268 (346)
                        .|.+++.....              .+........+..+ .|.   ..++.+   +.++++-..++.|..+|+.    
T Consensus       220 ~~~V~~i~r~~~G--------------~~~~~~~~~~v~~~-~~p---~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          220 SPSVYIIKRNADG--------------TFDDRSDIQLIAAY-KQC---NGATIHPINGELYFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             EEEEEEEECCTTS--------------CCSTTSCEEEEEEE-SCC---CCEEECTTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred             CceEEEEecCCCC--------------ceeecccceeeccC-CCc---eEEEEcCCCCeEEEEECCCCEEEEEecccccc
Confidence              24455422200              00000000111111 122   234444   4566666678889999997    


Q ss_pred             ---CCCCCCC-Ccc----ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          269 ---MKEQSPG-EGT----ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       269 ---~~~~~~~-~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                         ++..... ...    ...+... ........++|+|++. .++++-+....|+.++..
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~-~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGK-YAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSS-EEEEEETTTTEEEEEEEE
T ss_pred             cccCceeecccccccccccceeEec-CCCCCceEEEEcCCCC-EEEEEeCCCCEEEEEecC
Confidence               4432000 000    0011111 1223467899999993 245555677889886654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.85  E-value=0.1  Score=41.69  Aligned_cols=190  Identities=14%  Similarity=0.066  Sum_probs=92.8

Q ss_pred             CCCCcEEEEeecC----CeEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeC----C-----CCEEEEecC
Q 019117           95 VDGIPFLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK----D-----ESVRLWNVQ  159 (346)
Q Consensus        95 ~~~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~----d-----~~i~iwd~~  159 (346)
                      -++. +++.|+.+    ..+.+||..+.+-..  .++...... +++..  ++.+++.|+.    +     ..+.+||+.
T Consensus        23 ~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           23 VGRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCE-EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            3455 66666632    468889987765222  222111111 22222  5667777765    2     468889988


Q ss_pred             CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117          160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  234 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
                      +.+-... .......... +++..  ++.+++.|+.+     ..+.+||+.+..-..        .+.            
T Consensus        99 ~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--------~~~------------  154 (308)
T 1zgk_A           99 TNQWSPC-APMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL--------VAP------------  154 (308)
T ss_dssp             TTEEEEC-CCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE--------CCC------------
T ss_pred             CCeEeEC-CCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE--------CCC------------
Confidence            7653322 2111111122 22222  56677777644     357788877632111        100            


Q ss_pred             EEeecccceEEEEecCCEEEEEeec-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117          235 IASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       235 ~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  309 (346)
                       +......-.++.+.+.+++.|+.+     ..+.+||+.+.+-       ..+..+......-..+  ..++  .+++.|
T Consensus       155 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~--~~~~--~iyv~G  222 (308)
T 1zgk_A          155 -MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW-------RMITAMNTIRSGAGVC--VLHN--CIYAAG  222 (308)
T ss_dssp             -CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-------EECCCCSSCCBSCEEE--EETT--EEEEEC
T ss_pred             -CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE-------eeCCCCCCccccceEE--EECC--EEEEEe
Confidence             000001112223346666666654     4588888876541       1111122111111222  2245  577777


Q ss_pred             cCC-----CcEEEEEcCCCC
Q 019117          310 NRE-----GKIFVWELQSSP  324 (346)
Q Consensus       310 ~~d-----g~i~iwd~~~~~  324 (346)
                      +.+     ..+.+||+.+.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCc
Confidence            654     468999988764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.83  E-value=0.13  Score=41.01  Aligned_cols=145  Identities=16%  Similarity=0.179  Sum_probs=74.6

Q ss_pred             CccEEEEEcCC-----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------CeEEEEEcc
Q 019117           48 YFNVFATVGGN-----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GIIRVIDVS  116 (346)
Q Consensus        48 ~~~~la~~~~~-----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~  116 (346)
                      ++.+++.|+.+     .+.+||..++.- ..+.....  .... . .+..  .+++ +++.|+.+      ..+.+||+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~--~r~~-~-~~~~--~~~~-iyv~GG~~~~~~~~~~~~~~d~~  126 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSW-YSKLGPPT--PRDS-L-AACA--AEGK-IYTSGGSEVGNSALYLFECYDTR  126 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEE-EEEECCSS--CCBS-C-EEEE--ETTE-EEEECCBBTTBSCCCCEEEEETT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeE-EECCCCCc--cccc-e-eEEE--ECCE-EEEECCCCCCCcEeeeEEEEeCC
Confidence            35677777643     388888776543 22222111  1111 1 1122  2566 77777655      468899988


Q ss_pred             Ccceee--eeccCCCceEEEEEeCCCCceEEEeeC---------CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          117 NEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK---------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       117 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      +.+-..  .+.........+.+   ++.+++.|+.         -..+.+||+.+.+-...-. ....... .+++..  
T Consensus       127 ~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~-~~~~~~--  199 (306)
T 3ii7_A          127 TESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MIEARKN-HGLVFV--  199 (306)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBS-CEEEEE--
T ss_pred             CCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-ccchhhc-ceEEEE--
Confidence            765222  22211122222222   4567777764         3458899998775332211 1011111 223333  


Q ss_pred             CCcEEEEEecC-----CeEEEEEcccc
Q 019117          186 DIYRIASCGMD-----NTVKIWSMKEF  207 (346)
Q Consensus       186 ~~~~l~s~~~d-----~~i~iwd~~~~  207 (346)
                      ++.+++.|+.+     ..+.+||+.+.
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            56677777654     35788888763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.79  E-value=0.24  Score=47.87  Aligned_cols=231  Identities=9%  Similarity=0.062  Sum_probs=127.2

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL  139 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  139 (346)
                      |.|.|+..+..+..          .++.+=+...+|..+ .+|.-. ..++.|+|+.+.+.++.+.- ...|.--.|-. 
T Consensus        50 vvIidl~~~~~~~r----------rpi~AdsAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis-  115 (1630)
T 1xi4_A           50 VVIIDMNDPSNPIR----------RPISADSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS-  115 (1630)
T ss_pred             EEEEECCCCCCccc----------ccccchhhccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecC-
Confidence            88888877654321          112222233457766 555554 78999999998887776663 45677888875 


Q ss_pred             CCceEEEeeCCCCEEEEecCC-CeeEEEecccC-CCCcceEEEEecCCCCcEEEEEe-------cCCeEEEEEcccccee
Q 019117          140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY  210 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~  210 (346)
                       .+.|+-.+ +..|.-|++.. ..+.+.+.... -....|..-..++ +.++++..|       ..|.+.+|....... 
T Consensus       116 -~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-  191 (1630)
T 1xi4_A          116 -LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-  191 (1630)
T ss_pred             -CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccccc-
Confidence             34444444 35799999963 34555554210 0145676777777 556555432       357888888876221 


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec----C-CEEEEEee---cCeEEEEcCCCC-CCCCCCc--cc
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----G-DFILSKSV---DNEIVLWEPKMK-EQSPGEG--TA  279 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~-~~l~~~~~---d~~i~iwd~~~~-~~~~~~~--~~  279 (346)
                                             ..+.+|...-..+...    + ..++.+..   .+.++|-++... ...+...  ..
T Consensus       192 -----------------------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~  248 (1630)
T 1xi4_A          192 -----------------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  248 (1630)
T ss_pred             -----------------------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc
Confidence                                   1222333222222221    1 11111111   268888888553 1111000  00


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      +....-.....-..++..|+.-  .++...+.-|.|+++|+.++..+...++..
T Consensus       249 ~~~~~~~~~~Dfpv~~~vs~k~--g~iy~itk~G~~~~~d~~t~~~i~~~ris~  300 (1630)
T 1xi4_A          249 DVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (1630)
T ss_pred             cccCCcccccCcceEEEecccc--CEEEEEecCceEEEEecccchhhhhccccC
Confidence            0000001112334455666654  577788889999999999998776555443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.29  E-value=0.35  Score=39.46  Aligned_cols=159  Identities=11%  Similarity=0.031  Sum_probs=87.2

Q ss_pred             eEEEEEEeecCCCccEEEEEc------------CCc-EEEEEeccC-ceeeeEeeee--cCCCccceEEEEEEEcCCCCc
Q 019117           36 LYAVVFNFIDSRYFNVFATVG------------GNR-VTVYQCLEG-GVIAALQSYV--DEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~------------~~~-v~i~~~~~~-~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      .-+++..|    +|..+.+++            .++ |.++|..+. .....+....  .....-....+.+..+.++..
T Consensus        52 ~EDi~~~~----~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           52 SEDLEILP----NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CCEEEECT----TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             cceeEEcC----CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            44566666    666766662            344 999998742 2223332111  001122444455543334543


Q ss_pred             EEEEee-c--CCeEEEEEccCcc----eeeeeccC-CCceEEEEEeCCCCceEEEee-----------------CCCCEE
Q 019117          100 FLVAGG-I--NGIIRVIDVSNEK----LHKSFVGH-GDSINEIRTQPLKPSLVVSAS-----------------KDESVR  154 (346)
Q Consensus       100 ~l~~~~-~--dg~i~iwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-----------------~d~~i~  154 (346)
                      +|+++. .  +.+|.+|+++...    .+..+.+. -...+++.+.+ ++.+.++..                 ..|.|.
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            444442 2  5688888876542    23334332 24578999998 777666643                 123444


Q ss_pred             EEecCCCeeEEEecccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccc
Q 019117          155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       155 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  206 (346)
                      .+|.  ++.. .+.   ..-...+.++|+| +++ ++++-+..+.|..|++..
T Consensus       207 r~d~--~~~~-~~~---~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          207 YYSP--NDVR-VVA---EGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EECT--TCCE-EEE---EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEEC--CeEE-Eee---cCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECC
Confidence            4444  3322 222   1334678999999 665 445556678999999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.22  E-value=0.35  Score=38.71  Aligned_cols=186  Identities=8%  Similarity=-0.035  Sum_probs=89.6

Q ss_pred             EEEEeecCCeEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeC----CC-------CEEEEecCCCeeEEEe
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASK----DE-------SVRLWNVQTGICILIF  167 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~~  167 (346)
                      +++.|+  ..+.+||..+++-.. .+.............. ++.+++.|+.    ++       .+.+||..+.+-. .+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-EC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-EC
Confidence            445555  578999998876322 2221111222222223 6677777773    11       2778888876532 22


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecC--------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  239 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
                      ......... .+++..  ++.+++.|+.+        ..+.+||+.+..-        ...+.             +...
T Consensus        83 ~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--------~~~~~-------------~p~~  138 (315)
T 4asc_A           83 PPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--------GESDP-------------LPYV  138 (315)
T ss_dssp             CCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--------EECCC-------------CSSC
T ss_pred             CCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--------eECCC-------------CCCc
Confidence            211011111 123332  56677777742        3588888876321        11100             0000


Q ss_pred             ccceEEEEecCCEEEEEee-c-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117          240 SNYVDCNRWLGDFILSKSV-D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  313 (346)
Q Consensus       240 ~~~i~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  313 (346)
                      ...-.++...+.+++.|+. +     ..+.+||+.+.+-       ..+..+......-  .+...++  .+++.|+.++
T Consensus       139 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~--~~~~~~~--~iyv~GG~~~  207 (315)
T 4asc_A          139 VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW-------KELAPMQTARSLF--GATVHDG--RIIVAAGVTD  207 (315)
T ss_dssp             CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE-------EECCCCSSCCBSC--EEEEETT--EEEEEEEECS
T ss_pred             ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE-------EECCCCCCchhce--EEEEECC--EEEEEeccCC
Confidence            0111222333666677766 2     4688899877531       1111121111111  1222355  5666666543


Q ss_pred             -----cEEEEEcCCCC
Q 019117          314 -----KIFVWELQSSP  324 (346)
Q Consensus       314 -----~i~iwd~~~~~  324 (346)
                           .+.+||+.+.+
T Consensus       208 ~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          208 TGLTSSAEVYSITDNK  223 (315)
T ss_dssp             SSEEEEEEEEETTTTE
T ss_pred             CCccceEEEEECCCCe
Confidence                 58889988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.15  E-value=1  Score=43.85  Aligned_cols=197  Identities=14%  Similarity=0.135  Sum_probs=105.3

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceeeeecc
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVG  126 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~  126 (346)
                      ..+++|.-.+..+.|||+.+...++...      -.+.|.-=.|.  .+.  .|+..+ +..|.-|++.. ..+++.+..
T Consensus        76 ~~~iiALrag~~lQiFnl~~k~klks~~------~~e~VvfWkWi--s~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR  144 (1630)
T 1xi4_A           76 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVT-DNAVYHWSMEGESQPVKMFDR  144 (1630)
T ss_pred             CcceEEEecCCeEEEeehHHhhhhcccc------cCCCceEEEec--CCC--eeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence            4567887775569999998877766654      23344334443  443  455554 45799999964 244444544


Q ss_pred             C----CCceEEEEEeCCCCceEEEee-------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEec--CCCCcEEEEE
Q 019117          127 H----GDSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH--PSDIYRIASC  193 (346)
Q Consensus       127 ~----~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~  193 (346)
                      |    ...|..-..++ +.++++..|       -.|.+.+|..+.+ ..+.+.   ||......+...  +....+++.+
T Consensus       145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie---gha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc-cchhhh---HhHhhhheeccCCCCCCceEEEEE
Confidence            4    45677777788 555554332       3477888887643 233333   455444333332  1112222222


Q ss_pred             ec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117          194 GM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       194 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      ..   .+.++|-++......          ...+..+.... .+....-.+--.++..+  -..+...+.-|.|.++|+.
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~----------~~~f~kk~~~~-~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~  288 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTG----------NQPFPKKAVDV-FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (1630)
T ss_pred             EecCCCceEEEEecCCCccC----------CCCCccccccc-cCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence            11   268888888652000          00111110000 00011112223344444  4467777888999999999


Q ss_pred             CCC
Q 019117          269 MKE  271 (346)
Q Consensus       269 ~~~  271 (346)
                      ++.
T Consensus       289 t~~  291 (1630)
T 1xi4_A          289 TGT  291 (1630)
T ss_pred             cch
Confidence            987

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.14  E-value=0.78  Score=41.96  Aligned_cols=238  Identities=12%  Similarity=0.036  Sum_probs=119.4

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ..|.++.-..    ++.+.+.. .+++..|+..++.. ..+.......  ....|.++.  .+.+|.  |..|+..+-|.
T Consensus       373 ~~v~~i~~d~----~g~lWigt-~~GL~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~--~d~~g~--lWigT~~~Gl~  442 (758)
T 3ott_A          373 NRIRHIYEDK----EQQLWIAT-DGSINRYDYATRQF-IHYNIVDNTGTYNTNWTYYIF--EDTAGQ--LWISTCLGGIF  442 (758)
T ss_dssp             SCEEEEEECT----TSCEEEEE-TTEEEEEETTTTEE-EEEEEECCC--CBSSSEEEEE--ECTTSE--EEEEESSSCEE
T ss_pred             CceEEEEECC----CCCEEEEe-CCcHhhcCcCCCcE-EEeecCCCcCCCCCceEEEEE--EcCCCC--EEEEECCCceE
Confidence            3577776544    55655544 56899999766543 2222111000  123454443  335664  66677666688


Q ss_pred             EEEccCc-----cee---eeec---c-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          112 VIDVSNE-----KLH---KSFV---G-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       112 iwd~~~~-----~~~---~~~~---~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      ++|..+.     ...   ..+.   + ....|.++...+ ++.+.+.++..+-|..+|..+++..............+.+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~  521 (758)
T 3ott_A          443 VVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNY  521 (758)
T ss_dssp             EEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEE
T ss_pred             EEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccce
Confidence            8886531     111   1111   1 123588888877 5665553333355888998877654432210011346788


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD  259 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d  259 (346)
                      +.... ++.+.+ |+.. -+..||..+.....   +         .       ..  ......|.++......|..++..
T Consensus       522 i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~---~---------~-------~~--gl~~~~i~~i~~~~g~lWi~t~~  577 (758)
T 3ott_A          522 LLCDE-DGLLWV-GFHG-GVMRINPKDESQQS---I---------S-------FG--SFSNNEILSMTCVKNSIWVSTTN  577 (758)
T ss_dssp             EEECT-TSCEEE-EETT-EEEEECC--CCCCB---C---------C-------CC--C---CCEEEEEEETTEEEEEESS
T ss_pred             EEECC-CCCEEE-EecC-ceEEEecCCCceEE---e---------c-------cc--CCCccceEEEEECCCCEEEECCC
Confidence            88775 666554 4444 47778766521100   0         0       00  00123455555554556666655


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEcCCCcEEEEEcC
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      | +..+|..+.+.          ..+......+....+. ++|   .|..|+.+|.+ .++.+
T Consensus       578 G-l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~G---~l~fG~~~Gl~-~f~p~  625 (758)
T 3ott_A          578 G-LWIIDRKTMDA----------RQQNMTNKRFTSLLFDPKED---CVYLGGADGFG-ISHSN  625 (758)
T ss_dssp             C-EEEEETTTCCE----------EEC--CCCCCSEEEEETTTT---EEEEECBSEEE-EEEC-
T ss_pred             C-eEEEcCCCcee----------EEecCCCCceeeeEEECCCC---cEEEecCCceE-EEChh
Confidence            5 77888876542          1111112223333333 355   57777777754 44543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.04  E-value=0.48  Score=38.67  Aligned_cols=159  Identities=9%  Similarity=0.076  Sum_probs=88.9

Q ss_pred             ceEEEEEEeecCCCccEEEEEcC--C-cEEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-----
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGG--N-RVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-----  105 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~--~-~v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-----  105 (346)
                      ....+.+.++......++++-..  + .|.+|++..+. ....+..+.. ..-.....+.+.  ++|. +.++..     
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~--~~G~-fyvt~~~~ftd  188 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAV--GPEH-FYATNDHYFID  188 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEE--ETTE-EEEEESCSCSS
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEe--CCCC-EEecCCcEeCC
Confidence            45567776631112235555443  2 28898887653 3333444432 234556677776  7887 666643     


Q ss_pred             ------------cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCC-Cee--EEEecc
Q 019117          106 ------------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQT-GIC--ILIFAG  169 (346)
Q Consensus       106 ------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~--~~~~~~  169 (346)
                                  ..|.|.-+|.  ++ +..+...-...+.++|+| +++.| ++-+..+.|..|++.. ++.  ...+. 
T Consensus       189 ~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-  263 (355)
T 3sre_A          189 PYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-  263 (355)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-
T ss_pred             cccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-
Confidence                        1244555554  33 222332334578999999 66554 4455678999999863 322  22332 


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEcc
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK  205 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~  205 (346)
                         ..+..-.+++.++++++.+++..+ +.|..|+..
T Consensus       264 ---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          264 ---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             ---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             ---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence               346778889986237777666544 344444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.98  E-value=0.52  Score=38.57  Aligned_cols=105  Identities=10%  Similarity=0.026  Sum_probs=57.8

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCC---CCcEEEEeec--
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVD---GIPFLVAGGI--  106 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---~~~~l~~~~~--  106 (346)
                      -.....|+|.|    +|+++++-..+.|.+++ .++.  ..+.... ..........+++.  |+   +. .|+.+..  
T Consensus        28 l~~P~~ia~~p----dG~l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~--pdf~~~g-~lyv~~~~~   97 (354)
T 3a9g_A           28 LEVPWSIAPLG----GGRYLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALH--PEFPKKS-WVYLYASYF   97 (354)
T ss_dssp             CSCEEEEEEEE----TTEEEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEEC--TTTTTSC-EEEEEEEEE
T ss_pred             CCCCeEEEEcC----CCeEEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeC--CCCCcCC-EEEEEEecc
Confidence            34568999999    78888887766688886 3443  3332211 01112345555554  76   33 3444332  


Q ss_pred             --C----CeEEEEEccCc-------cee-eeecc-CCCceEEEEEeCCCCceEEEee
Q 019117          107 --N----GIIRVIDVSNE-------KLH-KSFVG-HGDSINEIRTQPLKPSLVVSAS  148 (346)
Q Consensus       107 --d----g~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~  148 (346)
                        +    ..|..|+....       +.+ ..+.. .......++|.| ++.++++.+
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence              3    56777776543       111 11221 111346799999 777666644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.61  E-value=0.75  Score=37.62  Aligned_cols=100  Identities=20%  Similarity=0.154  Sum_probs=56.2

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-eeeeec---cCCCceEEEEEeCC---CCceEEEeeC---C----CC
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFV---GHGDSINEIRTQPL---KPSLVVSASK---D----ES  152 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~---d----~~  152 (346)
                      ..++|.  |+|+ ++ ++..+|.|.+++ .+++ .+..+.   ........|+++|+   ++.++++-+.   +    ..
T Consensus        32 ~~ia~~--pdG~-l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           32 WSIAPL--GGGR-YL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEE--ETTE-EE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             eEEEEc--CCCe-EE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            446665  8887 44 445569999997 3444 222221   12346789999993   2444444332   3    56


Q ss_pred             EEEEecCCC-------eeE-EEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          153 VRLWNVQTG-------ICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       153 i~iwd~~~~-------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      |..|+....       +.+ ..+.....|  ....|+|.| ++.++++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT-TSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC-CCcEEEEEC
Confidence            777777643       111 112211112  346799999 777777654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.50  E-value=0.82  Score=37.36  Aligned_cols=57  Identities=9%  Similarity=-0.031  Sum_probs=37.4

Q ss_pred             cCeeEEEEeecC-----CcceEEEEcCCCcEEEEEcCCCCcceeeee----eeeEEEEEecCCCCC
Q 019117          290 CDIWFIKFSCDF-----HYNAAAIGNREGKIFVWELQSSPPVLIARL----ICFSLHVKYNPQSVY  346 (346)
Q Consensus       290 ~~v~~~~~s~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~spdg~~  346 (346)
                      ..+..+.|....     ++.++++.-..+.|...++..++......+    ...+..+++.|||.+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l  336 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL  336 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence            356778886421     126777777788888888886543322222    235788999999863

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.45  E-value=0.96  Score=37.86  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=132.5

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeecc
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVG  126 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~  126 (346)
                      ..+.+|.-....+.|||+.+...++...      -.+.|.-=.|.  .+.  .|+... +..|.-|++... .+++.+..
T Consensus        76 ~~~iiALrag~~lQiFnle~K~klks~~------~~e~VvfWkWi--s~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           76 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVT-DNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             SSSCEEEEETTEEEEEETTTTEEEEEEE------CSSCCCEEEEE--ETT--EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             CCcEEEEecCCeEEEEchHHhhhhccee------cCCCceEEEec--CCC--eEEEEc-CCeeEEecccCCCCchhheec
Confidence            4577888776669999998887777665      23345444554  333  455554 468999998643 45555554


Q ss_pred             C----CCceEEEEEeCCCCceEEEee-------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC--CCcEEEEE
Q 019117          127 H----GDSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASC  193 (346)
Q Consensus       127 ~----~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~  193 (346)
                      |    ...|.....++ +.++++..+       -.|.+.+|..+.+ ..+.+.   +|......+.+.-+  ...+++-+
T Consensus       145 ~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa  219 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA  219 (494)
T ss_dssp             CGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC---CSEEEEEEEECTTCSSEEEEEEEE
T ss_pred             chhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchhe---eeeeeeEEEecCCCCCCceEEEEE
Confidence            4    34677777888 556555332       2467889988643 445555   67666655554320  11233333


Q ss_pred             ec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117          194 GM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       194 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      ..   .+.+++-++.....          ....+..+. ....+....-.+--.++..+  -..+..-+.-|.|.+||+.
T Consensus       220 ~r~~~g~kLhi~Ei~~~~~----------~~~~f~kk~-vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle  288 (494)
T 1bpo_A          220 VRGQAGGKLHIIEVGTPPT----------GNQPFPKKA-VDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (494)
T ss_dssp             ECSTTCCEEEEEECSCCCT----------TCCCCCCEE-EECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             EecCCCcEEEEEEcCCCcc----------CCCCcccee-eeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence            33   26888888865200          000000000 00000001112333445555  4567778889999999999


Q ss_pred             CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117          269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  324 (346)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (346)
                      ++.         ++..-+.....|...+......  =+++....|.|.--.+....
T Consensus       289 Tgt---------~i~~nrIs~~~iF~t~~~~~~~--Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          289 TGT---------CIYMNRISGETIFVTAPHEATA--GIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TCC---------EEEEEECCSSCEEEEEEETTTT--EEEEEETTCEEEEEEECTTT
T ss_pred             cce---------eeeeecccCCceEEecccCCCC--cEEEEccCceEEEEEEcccc
Confidence            987         4444433444554444443332  23444466666666665554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.45  E-value=0.78  Score=36.73  Aligned_cols=185  Identities=11%  Similarity=0.061  Sum_probs=87.4

Q ss_pred             EEEEeecCCeEEEEEccCcceee-eecc-CCCceEEEEEeCCCCceEEEeeC----CC---C----EEEEecCCCeeEEE
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHK-SFVG-HGDSINEIRTQPLKPSLVVSASK----DE---S----VRLWNVQTGICILI  166 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~~~----d~---~----i~iwd~~~~~~~~~  166 (346)
                      +++.|+.  .+..||..+.+-.. .+.. ....-.+++ .. ++.+++.|+.    ++   .    +.++|..+.+-.. 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-   92 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-   92 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-
Confidence            4555553  47899988776333 2221 111122333 23 6677777773    12   1    7778887665432 


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEecC-------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  239 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
                      +......... .+++..  ++.+++.|+.+       ..+.+||+.+..-.....     .           +. ....|
T Consensus        93 ~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~-----------p~-~r~~~  152 (318)
T 2woz_A           93 LPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-----L-----------PI-KVYGH  152 (318)
T ss_dssp             CSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-----C-----------SS-CEESC
T ss_pred             CCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-----C-----------CC-ccccc
Confidence            2211011111 223333  56677777754       247777877632111100     0           00 01112


Q ss_pred             ccceEEEEecCCEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-
Q 019117          240 SNYVDCNRWLGDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-  312 (346)
Q Consensus       240 ~~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-  312 (346)
                          .++...+.+++.|+.+      ..+.+||+.+.+-       ..+.........- ++ ...++  .+++.|+.+ 
T Consensus       153 ----~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~-~~-~~~~~--~iyv~GG~~~  217 (318)
T 2woz_A          153 ----NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW-------KDLAPMKTPRSMF-GV-AIHKG--KIVIAGGVTE  217 (318)
T ss_dssp             ----EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE-------EEECCCSSCCBSC-EE-EEETT--EEEEEEEEET
T ss_pred             ----EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE-------EECCCCCCCcccc-eE-EEECC--EEEEEcCcCC
Confidence                1222336666777652      3588999887541       1121122111111 12 22344  566666543 


Q ss_pred             ----CcEEEEEcCCCC
Q 019117          313 ----GKIFVWELQSSP  324 (346)
Q Consensus       313 ----g~i~iwd~~~~~  324 (346)
                          ..+.+||+.+.+
T Consensus       218 ~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          218 DGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TEEEEEEEEEETTTCC
T ss_pred             CCccceEEEEECCCCe
Confidence                357789988765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.45  E-value=0.85  Score=37.18  Aligned_cols=94  Identities=14%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             CCCcEEEEeec-CCeEEEEEccC--cc--eeeeec-cCCCceEEEEEeCCCCceEEEeeC-C---------CCEEEEecC
Q 019117           96 DGIPFLVAGGI-NGIIRVIDVSN--EK--LHKSFV-GHGDSINEIRTQPLKPSLVVSASK-D---------ESVRLWNVQ  159 (346)
Q Consensus        96 ~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-d---------~~i~iwd~~  159 (346)
                      +++ +++.|+. ...+.+||+.+  .+  .+..+. ...... +++..  ++.+++.|+. +         ..+.+||+.
T Consensus        19 ~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           19 NDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             TTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             CCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            455 5555553 45788899864  22  222222 111122 22222  4667777775 2         468899998


Q ss_pred             CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC
Q 019117          160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD  196 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  196 (346)
                      +.+-...-...........++.  . ++.+++.|+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~  128 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred             CCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence            7653322211000111122222  2 67778888754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.25  E-value=1.8  Score=39.64  Aligned_cols=253  Identities=10%  Similarity=0.055  Sum_probs=120.5

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeec-CCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      ..|.++....    ++.+.+.. .+++..++..++.. ..+..... ......|.++..  ..++. .|..|.. +-+..
T Consensus       146 ~~i~~i~~d~----~g~lWigt-~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~--d~~~~-~lWigt~-~Gl~~  215 (758)
T 3ott_A          146 NTIYSIIRTK----DNQIYVGT-YNGLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLE--DTTRQ-CVWIGTE-GYLFQ  215 (758)
T ss_dssp             SCEEEEEECT----TCCEEEEE-TTEEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEE--ETTTT-EEEEEEE-EEEEE
T ss_pred             CeEEEEEEcC----CCCEEEEe-CCCHhhCccCCCce-EEecCCCccccccceeEEEEE--ECCCC-EEEEEEC-CCCeE
Confidence            4577766544    45666544 56788888655432 22211000 001223554443  35555 5555664 45888


Q ss_pred             EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc----CCCCcceEEEEecCCCCc
Q 019117          113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~  188 (346)
                      +|..+++...........|.++...+ ++. |..|+.+ -+.+++..+++........    .-....|.++.... ++.
T Consensus       216 ~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~  291 (758)
T 3ott_A          216 YFPSTGQIKQTEAFHNNSIKSLALDG-NGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EHN  291 (758)
T ss_dssp             EETTTTEEEEEEEEEEEEEEEEEECT-TCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TCC
T ss_pred             EcCCCCeEEeccCCCCCeEEEEEEcC-CCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CCC
Confidence            88876653322111234577887765 444 4445544 4888888765433222110    01234688988876 555


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcC
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~  267 (346)
                       |-.|+..| +.++.........    ...             .. ........|.++.-+ ...|..|+.+ -+..++.
T Consensus       292 -lWiGT~~G-l~~~~~~~~~~~~----~~~-------------~~-~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~  350 (758)
T 3ott_A          292 -IWLGTDYG-ISLSRYNSALQFI----PIS-------------QI-TGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTD  350 (758)
T ss_dssp             -EEEEESSS-EEEECCCC-CEEE----EHH-------------HH-SCSCCCCBEEEEEECTTCCEEEEETT-EEEEESC
T ss_pred             -EEEEeCCc-ccccccCCceeEE----ecc-------------cC-CCCCCCceEEEEEEcCCCCEEEeeCC-cceeecc
Confidence             44444556 5443221100000    000             00 000112346676665 4455566654 4667776


Q ss_pred             CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117          268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  325 (346)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (346)
                      .+++....................|.++.-..++   .|-.|+. +-|..||..+++.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~lWigt~-~GL~~~~~~~~~~  404 (758)
T 3ott_A          351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ---QLWIATD-GSINRYDYATRQF  404 (758)
T ss_dssp             TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS---CEEEEET-TEEEEEETTTTEE
T ss_pred             cccccceeEEeccCCcCCCCCCCceEEEEECCCC---CEEEEeC-CcHhhcCcCCCcE
Confidence            5432110000000000001122457777666665   2444443 5688999887653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.09  E-value=1.1  Score=36.55  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             CceEEEEEEeecCCCcc-EEEEEcCCcEEEEEe
Q 019117           34 RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQC   65 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~-~la~~~~~~v~i~~~   65 (346)
                      .....|+|.|    +|+ ++++-..+.|++++.
T Consensus        18 ~~P~~i~~~p----dG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLP----DNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECS----TTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcC----CCCEEEEEeCCceEEEEeC
Confidence            3467899998    788 887776655888873

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.73  E-value=0.72  Score=34.62  Aligned_cols=152  Identities=5%  Similarity=-0.096  Sum_probs=74.3

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeE--eeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAAL--QSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ..+.+++|+|    +|.+.|+ ..+.+.-.+..++....-+  .......--....  +..++++|. +.++  .||.|.
T Consensus        41 ~~~~~laf~P----~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~--a~~fD~~G~-LYav--~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSP----GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ--FLFFDPNGY-LYAV--SKDKLY  110 (236)
T ss_dssp             TTCSEEEECT----TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS--EEEECTTSC-EEEE--ETTEEE
T ss_pred             ccceeEEECC----CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccce--EEEECCCCC-EEEe--CCCEEE
Confidence            4677999999    7888888 4554433332221110000  0000000001122  344569997 5555  569888


Q ss_pred             EEEccCcc-ee------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee------EEEecccCCCCcceE
Q 019117          112 VIDVSNEK-LH------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC------ILIFAGAGGHRNEVL  178 (346)
Q Consensus       112 iwd~~~~~-~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~v~  178 (346)
                      -++.-+.. ..      ..-..-=..+..|.+.| ++.+.+..  |+.+.-+...++..      ...+..  ..-..-+
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~--~g~~~yr  185 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ--GGWDTFK  185 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES--SSGGGEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceecc--CCcceEE
Confidence            77753321 11      11111124679999999 77666665  77754333322110      111110  1222345


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                      .+.|.| ++.+.+..  ++  ++|...
T Consensus       186 ~l~f~~-~G~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          186 FLFFSS-VGTLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             EEEECT-TSCEEEEE--TT--EEEEES
T ss_pred             EEEECC-CCcEEEEe--CC--eEEecC
Confidence            567887 77655554  66  444443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.09  E-value=4.9  Score=36.34  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             CCCCcEEEEeecC----CeEEEEEccCcceeeee--------ccCCCceEEEEEeCCCCceEEEeeCCC------CEEEE
Q 019117           95 VDGIPFLVAGGIN----GIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKDE------SVRLW  156 (346)
Q Consensus        95 ~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw  156 (346)
                      .++. +++.|+.+    ..+.+||..+.+-...-        ......-..+.+.. ++.+++.|+.++      .+.+|
T Consensus       396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEE
Confidence            4455 77777643    46888998776532221        11112223333432 456777777543      57889


Q ss_pred             ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC--eEEEEEccc
Q 019117          157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKE  206 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~  206 (346)
                      |+.+.+-... .........- +++... ++.+++.|+.++  .+.+||+.+
T Consensus       474 d~~t~~W~~~-~~~p~~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          474 DMKTREWSMI-KSLSHTRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             ETTTTEEEEC-CCCSBCCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTT
T ss_pred             eCCCCcEEEC-CCCCCCcccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCC
Confidence            9887643322 1100111122 233322 677888887655  688898877

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.00  E-value=3.1  Score=33.81  Aligned_cols=262  Identities=11%  Similarity=0.031  Sum_probs=126.1

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEc-CCcEEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCC----CC
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVD----GI   98 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-~~~v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~----~~   98 (346)
                      ...+...-...+.|+|.|    +|.+|++-. .+.|++++...+.. ..+....  ..........+++.  |+    +.
T Consensus        24 ~~~va~gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~--Pdf~~~g~   96 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALS--PDYASDHM   96 (347)
T ss_dssp             EEEEECCCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEEC--TTHHHHCE
T ss_pred             eEEeecCCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEec--cccccCCE
Confidence            334444455678999999    788988887 44588887544433 2222110  01123455556654  64    43


Q ss_pred             cEEEEe--ecCCeEEEEEccCc----------cee-eeecc-CCCceEEEEEeCCCCceEEEeeC-------------CC
Q 019117           99 PFLVAG--GINGIIRVIDVSNE----------KLH-KSFVG-HGDSINEIRTQPLKPSLVVSASK-------------DE  151 (346)
Q Consensus        99 ~~l~~~--~~dg~i~iwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~~-------------d~  151 (346)
                       +.++-  ..++.|.-|.+..+          +.+ ..+.. ....-..|.|.| ++.++++.++             -|
T Consensus        97 -lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G  174 (347)
T 3das_A           97 -VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGG  174 (347)
T ss_dssp             -EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred             -EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCC
Confidence             33321  23456666665441          111 12221 111346799999 7777776543             24


Q ss_pred             CEEEEecCCC---------eeEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeeeeceeecCCC
Q 019117          152 SVRLWNVQTG---------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLP  221 (346)
Q Consensus       152 ~i~iwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~  221 (346)
                      .|.-.+....         ..+...    +|. ....++|+| ++.++++- +.++.=.+--+....     .+.|....
T Consensus       175 ~IlRi~~dG~ip~~nPf~~~~i~a~----G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~-----nyGwP~~~  243 (347)
T 3das_A          175 KILRMTPDGEPAPGNPFPGSPVYSY----GHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGD-----NYGWPEAE  243 (347)
T ss_dssp             CEEEECTTSSBCTTCSSTTCCEEEB----CCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTC-----BCCTTTCC
T ss_pred             EEEEEeCCCCccCCCCCCCCeEEee----CCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCC-----EecCCccc
Confidence            4444444311         011111    343 345789998 67655543 223322222222211     11111111


Q ss_pred             CCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117          222 SKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  300 (346)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  300 (346)
                      ..........++..+..+......+.|. +.++...-..+.|....+......     .+...-+....+.+..++..||
T Consensus       244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~-----~~~e~~l~~~~gR~~dv~~~pD  318 (347)
T 3das_A          244 GKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAA-----ADPQAFLEGEYGRLRTVAPAGG  318 (347)
T ss_dssp             SSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEES-----SCCEEESTTTSSCEEEEEEEET
T ss_pred             CCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCcee-----cceEEeecCCCCCccEEEECCC
Confidence            1111112233444444333456677776 555655555566666666543210     0011122334568999999999


Q ss_pred             CCcceEEEEcCCC
Q 019117          301 FHYNAAAIGNREG  313 (346)
Q Consensus       301 ~~~~~l~~~~~dg  313 (346)
                      |. .++++...||
T Consensus       319 G~-lyv~td~~~g  330 (347)
T 3das_A          319 DK-LWLVTSNTDG  330 (347)
T ss_dssp             TE-EEEEECTTSS
T ss_pred             Cc-EEEEEcCCCC
Confidence            93 2344444444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.96  E-value=0.52  Score=35.36  Aligned_cols=101  Identities=15%  Similarity=0.043  Sum_probs=56.6

Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEEccCccee------eee-c-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           90 SWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------KSF-V-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        90 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~-~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      .++++|+|. +.++  .+|.+.-.+..+....      ..+ . +... ..++.|.| ++.+.++  .||.|.-++..+.
T Consensus        45 ~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           45 FLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             EEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred             eEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence            344559887 5555  6787666665442211      111 0 1112 47889998 7776666  4698887776432


Q ss_pred             eeEEEeccc----CCCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117          162 ICILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVK  200 (346)
Q Consensus       162 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  200 (346)
                      ....-+...    ..-=..+..|.+.| ++.+.+..  |+.+.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY  157 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence            211111000    01124678999999 88866655  77743

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.27  E-value=8.2  Score=34.89  Aligned_cols=155  Identities=15%  Similarity=0.105  Sum_probs=79.6

Q ss_pred             CccEEEEEcCC-----cEEEEEeccCceeeeEe-eee-cCCCccceEEEEEEEcC-CCCcEEEEeecC------CeEEEE
Q 019117           48 YFNVFATVGGN-----RVTVYQCLEGGVIAALQ-SYV-DEDKEESFYTVSWACNV-DGIPFLVAGGIN------GIIRVI  113 (346)
Q Consensus        48 ~~~~la~~~~~-----~v~i~~~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~-~~~~~l~~~~~d------g~i~iw  113 (346)
                      ++.+++.|+.+     .+.+||..++.-.. +. ... ...........+... . +++ +++.|+.+      ..+.+|
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-~~~~~p~~~~p~~R~~hs~~~~-~~~~~-lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDM-KNIEVSSSEVPVARMCHTFTTI-SRNNQ-LLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEE-EECCCCCSCCCCCCBSCEEEEE-TTTTE-EEEECCBSSTTCBCCCCEEE
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEE-eccCCCCCCCCccccceEEEEE-ccCCE-EEEEcCCCCCCCccccEEEE
Confidence            45777777753     38899987765332 22 100 000111111111221 3 676 77777643      357888


Q ss_pred             EccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCeeEEEecc--cCCCCcceEEEEecCCCC
Q 019117          114 DVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       114 d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~  187 (346)
                      |..+.+  .+..+......- +++... ++.+++.|+.++  .+.+||+.+.+-...-..  .........++.+...++
T Consensus       474 d~~t~~W~~~~~~p~~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred             eCCCCcEEECCCCCCCcccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence            887754  222222222222 233323 567888887654  689999987653322110  001112223355554236


Q ss_pred             cEEEEEec--C-----CeEEEEEcccc
Q 019117          188 YRIASCGM--D-----NTVKIWSMKEF  207 (346)
Q Consensus       188 ~~l~s~~~--d-----~~i~iwd~~~~  207 (346)
                      .+++.|+.  +     ..+.+||+.+.
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            77777776  2     35888888874

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.18  E-value=5.1  Score=32.39  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=65.0

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEe-ecCCeEEEEEccCcceeeeecc
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAG-GINGIIRVIDVSNEKLHKSFVG  126 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  126 (346)
                      .+++.++.|+ |.-+|..+|+....+..-    ...++....-...+ ++. .++.. ..||.|..++..+|.....+..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeecc
Confidence            3455555555 777787777766665431    00111110000001 233 44443 5799999999888855443321


Q ss_pred             ----CCCceEEEEEeC--------CCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117          127 ----HGDSINEIRTQP--------LKPSLVVSASKDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus       127 ----~~~~v~~~~~~~--------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  169 (346)
                          ...++.. .=.|        ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus        86 ~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           86 RQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence                1222221 0000        0356889999999999999999999999874

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.29  E-value=6.1  Score=31.78  Aligned_cols=118  Identities=13%  Similarity=0.116  Sum_probs=72.9

Q ss_pred             CccceEEEEEEEc-CCCCcEEEEeecCCeEEEEEccCcc-------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117           82 KEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV  153 (346)
Q Consensus        82 ~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  153 (346)
                      .++.|..+..... ++.. +++..+.+|.++--.+..-.       ....++. .+.+..+.... ....++..+..|.+
T Consensus        93 ~~e~i~~~~~~~~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~  169 (327)
T 3uc1_A           93 PEERIAQVIQIRGYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQS  169 (327)
T ss_dssp             TTCCEEEEEEESSTTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEE
T ss_pred             CCCEEEEEEEeccCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeE
Confidence            3455554433311 1345 89999999999998875422       2223333 44555555555 45667777888988


Q ss_pred             EEEecC--CC---------eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          154 RLWNVQ--TG---------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       154 ~iwd~~--~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      ..+...  .-         .....+    .....|.++...+ ....++..+..|.++.-.+...
T Consensus       170 ~rf~~~~~eip~~gr~a~Gv~~i~L----~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~  229 (327)
T 3uc1_A          170 IRFSATDEALRPMGRATSGVQGMRF----NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEY  229 (327)
T ss_dssp             EEEECCTTTSCCCCTTSBCEESSCC----CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGS
T ss_pred             EEEECcccccCcCCcCCCCeeeecC----CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHc
Confidence            877765  21         111122    2345677666654 5567888899999998887763

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.00  E-value=5.8  Score=31.08  Aligned_cols=226  Identities=14%  Similarity=0.120  Sum_probs=114.7

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      .|..|+...     ...++.. ++.|..|-.....++.. ..    .....|..++..  ...  .++. . ||.|..|-
T Consensus        25 ~i~~ia~G~-----~h~~~l~-~G~v~~wG~n~~Gqlg~-p~----~~~~~i~~ia~G--~~h--s~~l-~-~G~v~~wG   87 (282)
T 3qhy_B           25 GVDAIAGGY-----FHGLALK-GGKVLGWGANLNGQLTM-PA----ATQSGVDAIAAG--NYH--SLAL-K-DGEVIAWG   87 (282)
T ss_dssp             SCCEEEECS-----SEEEEEE-TTEEEEEECCSSSTTSC-CG----GGGSCCCEEEEC--SSE--EEEE-E-TTEEEEEE
T ss_pred             CCcEEEeCC-----CeEEEEE-CCEEEEEeCCCCCCCCC-Cc----cCCCCEEEEEeC--CCE--EEEE-E-CCEEEEee
Confidence            466666543     2334443 44488887654333221 10    122344444442  222  3444 4 89999998


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      ....-.+..-..-...|..|+...   ...+.-. ||.|..|-......+-...   .....|..++.-. ... ++ -.
T Consensus        88 ~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~---~~~~~i~~i~~G~-~~~-~~-l~  157 (282)
T 3qhy_B           88 GNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA---EAQSGVTALDGGV-YTA-LA-VK  157 (282)
T ss_dssp             CCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG---GGGSSEEEEEECS-SEE-EE-EE
T ss_pred             CCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc---cCCCCeEEEEccc-CEE-EE-EE
Confidence            654222111111134677887754   3444445 8999999765432221111   1345677777653 322 33 33


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP  274 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  274 (346)
                       ||.|..|-........                   .+.    .-...|..++--..+.+.- .||.|..|-.....+..
T Consensus       158 -~G~v~~wG~n~~gqlg-------------------~p~----~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg  212 (282)
T 3qhy_B          158 -NGGVIAWGDNYFGQTT-------------------VPA----EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT  212 (282)
T ss_dssp             -TTEEEEEECCTTSTTS-------------------CCG----GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC
T ss_pred             -CCEEEEecCCCCCCCC-------------------Cce----ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC
Confidence             7999999766521100                   000    0123455555544444444 69999999876543211


Q ss_pred             CCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       275 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      .     +...    ...|..++.....   .++..  ||.|+.|-.....++
T Consensus       213 ~-----p~~~----~~~v~~i~~G~~h---~~al~--~g~v~~wG~n~~gq~  250 (282)
T 3qhy_B          213 V-----PTEA----LSGVSAIASGEWY---SLALK--NGKVIAWGSSRTAPS  250 (282)
T ss_dssp             C-----CGGG----GSSCCEEEECSSC---EEEEE--TTEEEEESTTCCCCG
T ss_pred             C-----Cccc----CCCceEEEcCCCE---EEEEE--CCEEEEecCCCCccc
Confidence            0     1111    1246666655443   33333  899999977665443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.49  E-value=12  Score=35.27  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117           89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF  124 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  124 (346)
                      ++....++.. ++++-+.|+++|+|++.+++++.+.
T Consensus       239 ~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          239 ISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeee
Confidence            3444446666 9999999999999999999887664

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.37  E-value=6.6  Score=30.79  Aligned_cols=167  Identities=12%  Similarity=0.056  Sum_probs=88.0

Q ss_pred             CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117          107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  186 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (346)
                      ||.|..|-....-.+..-......|..|+...  ...++. . ||.|..|-......+-.-.   .-...|..++... .
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~-~  112 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGA-W  112 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEET-T
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcC-C
Confidence            89999998654322211111234677777654  233333 4 8999999765432221111   1234688888763 3


Q ss_pred             CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEc
Q 019117          187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE  266 (346)
Q Consensus       187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd  266 (346)
                      .  .+.-. ||.|..|-.......                   ..+    ......|..++....+.+.-. ||.|..|-
T Consensus       113 h--s~al~-~G~v~~wG~n~~gql-------------------g~~----~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG  165 (282)
T 3qhy_B          113 A--SYALK-DGKVIAWGDDSDGQT-------------------TVP----AEAQSGVTALDGGVYTALAVK-NGGVIAWG  165 (282)
T ss_dssp             E--EEEEE-TTEEEEEECCTTSTT-------------------SCC----GGGGSSEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             E--EEEEe-CCeEEEecCCCCCcC-------------------CCC----ccCCCCeEEEEcccCEEEEEE-CCEEEEec
Confidence            3  33334 899999976552110                   000    001233555554433433334 89999998


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      .....+...     +..    ....|..++...+.   .++.  .||.|+.|-...
T Consensus       166 ~n~~gqlg~-----p~~----~~~~v~~i~~G~~h---s~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          166 DNYFGQTTV-----PAE----AQSGVDDVAGGIFH---SLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             CCTTSTTSC-----CGG----GGSSEEEEEECSSE---EEEE--ETTEEEEEECCT
T ss_pred             CCCCCCCCC-----cee----cCCCeEEEEecCCE---EEEE--ECCeEEEEECCC
Confidence            765432110     000    12356666555443   3444  589999997654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.82  E-value=10  Score=31.21  Aligned_cols=68  Identities=12%  Similarity=0.046  Sum_probs=35.9

Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-CC-C--------CcceEEEEecCCCCcEEEEEecCC
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-GG-H--------RNEVLSVDFHPSDIYRIASCGMDN  197 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-~--------~~~v~~~~~~~~~~~~l~s~~~d~  197 (346)
                      ..+.+|.+.|.+...++.+..++.|...+ ..++....+... .. +        ...+.+++++|.+...++.+...+
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            35789999884455555555444444332 223333322210 00 0        134889999985456666666544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.50  E-value=7  Score=36.84  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=47.0

Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC--CCcceEEEEecCCCCcEEEEE---ecCCeEEEEEc
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASC---GMDNTVKIWSM  204 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~---~~d~~i~iwd~  204 (346)
                      .+.++...+ +..++++-+.|+++|+|++.+++++........  ...........|..+.++.+-   ..+|..++|.+
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~  315 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL  315 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence            466777777 778999999999999999999999887643110  111111222333233333322   34567777776


Q ss_pred             cc
Q 019117          205 KE  206 (346)
Q Consensus       205 ~~  206 (346)
                      ..
T Consensus       316 ~~  317 (950)
T 4gq2_M          316 NA  317 (950)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.67  E-value=20  Score=31.38  Aligned_cols=262  Identities=12%  Similarity=0.051  Sum_probs=133.0

Q ss_pred             EEEEEcCCc-EEEEEeccCceeeeEeeeecCCC--------------------ccceEEEEEEEc---CCCCcEEEEee-
Q 019117           51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK--------------------EESFYTVSWACN---VDGIPFLVAGG-  105 (346)
Q Consensus        51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~---~~~~~~l~~~~-  105 (346)
                      .|.+|+..+ |+|+-+-+++.++.+..|.....                    .+......+++.   .||+ +|..-. 
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr-ylfiNdk  150 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK-YLFINDK  150 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE-EEEEEET
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE-EEEEecC
Confidence            355666666 99999999998888877654321                    111111223322   3566 565554 


Q ss_pred             cCCeEEEEEccCcceeeeecc-CCCceEEEEEe--CCCCceEEEeeC-------CCCEE---------E---EecCCCee
Q 019117          106 INGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQ--PLKPSLVVSASK-------DESVR---------L---WNVQTGIC  163 (346)
Q Consensus       106 ~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~s~~~-------d~~i~---------i---wd~~~~~~  163 (346)
                      .+..|...+++.-++-+.+.- ....+..+.|-  | +..+++.+++       ||...         +   .|..+.+.
T Consensus       151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v  229 (638)
T 3sbq_A          151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM  229 (638)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred             CCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence            567788888887765544432 45678888886  6 6667777664       23211         0   11111111


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecC---------------CeEEEEEccccceeeeeceeecCCCC-CCC--
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKSFTWTDLPS-KFP--  225 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~--  225 (346)
                      ...+.    -.+..-.+...+ ++.+.++.+.+               ..+.++++...+......... .... ..+  
T Consensus       230 ~~Qv~----v~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~-~~~g~gv~Vi  303 (638)
T 3sbq_A          230 AFQVI----VDGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVL  303 (638)
T ss_dssp             EEEEE----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCB-CCTTCCCCEE
T ss_pred             EEEEE----cCCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeE-EECCCCeeEE
Confidence            11111    011222334455 45555554332               257777776633322111000 0000 000  


Q ss_pred             -Ccc--c-eeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCCCCC---C-CccccccccccCCCcCeeE
Q 019117          226 -TKY--V-QFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSP---G-EGTADILQKYPVPECDIWF  294 (346)
Q Consensus       226 -~~~--~-~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~v~~  294 (346)
                       .+.  . ...+..+-.-+.....+..+  |+++++++. +.++.++|+.......   . ........... -......
T Consensus       304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlH  382 (638)
T 3sbq_A          304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLH  382 (638)
T ss_dssp             ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEE
T ss_pred             ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccE
Confidence             000  0 01111122223333445555  777766654 8899999988532100   0 00011111222 2345677


Q ss_pred             EEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          295 IKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       295 ~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      .+|.++|  ....+.--|..|.-|++...
T Consensus       383 t~Fd~~G--~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          383 TTFDGRG--NAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEECSSS--EEEEEETTTTEEEEEEHHHH
T ss_pred             EEECCCC--ceEeeeeecceEEEEeccHH
Confidence            8899988  56777789999999999763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=80.79  E-value=25  Score=29.79  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE--EEecccC---CCCcceEEEEecCC---CCcEEEEEe
Q 019117          128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI--LIFAGAG---GHRNEVLSVDFHPS---DIYRIASCG  194 (346)
Q Consensus       128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~  194 (346)
                      -.....++|.| ++.++++-...+.|.+++..+++..  ..+....   .....+..|+|+|+   ++.+.++-+
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            34567999999 7776666443346888876555432  2222110   12456789999984   445444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (188), Expect = 1e-16
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 85  SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV 144
                    +    PFL++G  +  I++ DVS      + VGH + +  +         +
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFI 262

Query: 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202
           +S + D+++R+W+ +   C+        H + V S+DFH      + +  +D TVK+W
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 49/203 (24%)

Query: 85  SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV 144
             +      N DG   + +   +  +RV  V+ ++       H   +  I   P      
Sbjct: 143 REWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201

Query: 145 V-------------------SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185
           +                   S S+D+++++W+V TG+C++   G   H N V  V FH  
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSG 258

Query: 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245
             + I SC  D T+++W  K                           +   + H ++V  
Sbjct: 259 GKF-ILSCADDKTLRVWDYKNKR-----------------------CMKTLNAHEHFVTS 294

Query: 246 NRWL--GDFILSKSVDNEIVLWE 266
             +     ++++ SVD  + +WE
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 33/233 (14%)

Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
           +  GH   +  +   P+   ++VSAS+D ++++W+ +TG          GH + V  + F
Sbjct: 12  ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISF 67

Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT------------------DLPSKF 224
             S     +                                             D   K 
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 225 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP-------KMKEQSPG 275
                 + V   + H  +V   R    G  I S S D  + +W         +++E    
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 276 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPV 326
                   +             +         +  G+R+  I +W++ +   +
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 100 FLVAGGINGIIRV--IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157
               G  +   R+  +    E +  S       I  +        L+++   D +  +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWD 298

Query: 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
                   + A   GH N V  +     D   +A+   D+ +KIW+
Sbjct: 299 ALKADRAGVLA---GHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 5e-11
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 28/181 (15%)

Query: 87  YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS 146
             V            V+G  +   ++ DV      ++F GH   IN I   P   +   +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFAT 243

Query: 147 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
            S D + RL++++    + +          + SV F  S    + +   D    +W   +
Sbjct: 244 GSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALK 301

Query: 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 264
                                       + + H N V C      G  + + S D+ + +
Sbjct: 302 AD-----------------------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 265 W 265
           W
Sbjct: 339 W 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 86  FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV 145
              ++          L+AG  +    V D           GH + ++ +         V 
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328

Query: 146 SASKDESVRLWN 157
           + S D  +++WN
Sbjct: 329 TGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 13/168 (7%), Positives = 35/168 (20%), Gaps = 14/168 (8%)

Query: 172 GHRNEVLSVDFHPSDIYRIASCGMDNTV---KIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228
           GH  ++ ++ +   D   + S   D  +     ++  +      +S             Y
Sbjct: 53  GHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 229 VQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288
           V             +             +     +     + +      + D        
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 289 ECDIWFIK----------FSCDFHYNAAAIGNREGKIFVWELQSSPPV 326
           E                  S          G  +    +W+++     
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 41  FNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99
              +        A    +R V V+    G ++  L S  +          S     DG  
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-Q 267

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-----------SLVVSAS 148
            +V+G ++  +++ ++ N               E+     K              ++S S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWS 203
           KD  V  W+ ++G  +L+     GHRN V+SV          +    A+   D   +IW 
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQ---GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

Query: 204 MKE 206
            K+
Sbjct: 385 YKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG----GHRNEVLSVDF 182
             D +  +   P     + + S D +VR+W+ +TG  +           GH++ V SV F
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262

Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242
              D   + S  +D +VK+W+++        S T      +      +  V   +   N 
Sbjct: 263 TR-DGQSVVSGSLDRSVKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN- 319

Query: 243 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS--CD 300
                   ++ILS S D  ++ W+ K         + + L         +  +  +    
Sbjct: 320 -------DEYILSGSKDRGVLFWDKK---------SGNPLLMLQGHRNSVISVAVANGSS 363

Query: 301 FH--YNAAAIGNREGKIFVWELQ 321
               YN  A G+ + K  +W+ +
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 10/161 (6%)

Query: 146 SASKDESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
               ++   L+N      I +    +  H + V  V F         + G + T +++ +
Sbjct: 33  KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGCNKTTQVYRV 90

Query: 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 262
            +       S                 P         Y+    +   G F+ + + D  I
Sbjct: 91  SDGSLVARLSDDSAANKDPENLNTSSSP-----SSDLYIRSVCFSPDGKFLATGAEDRLI 145

Query: 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303
            +W+ + ++        +              +        
Sbjct: 146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 7e-12
 Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 45/243 (18%)

Query: 87  YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS 146
           +  +  C       +V+G  + +++V D   E    +  GH + +    +       VVS
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVS 192

Query: 147 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
            S D S+R+W+V+TG CI    G   H++    ++   +    + S   D+TVKIW +K 
Sbjct: 193 GSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELKDN---ILVSGNADSTVKIWDIKT 246

Query: 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
                                           H + V C ++  +F+++ S D  + LW+
Sbjct: 247 GQCLQTLQGPNK--------------------HQSAVTCLQFNKNFVITSSDDGTVKLWD 286

Query: 267 PKMKEQSPGEGTADILQKYPVPECD-----IWFIKFSCDFHYNAAAI--GNREGKIFVWE 319
            K         T + ++     E       +W I+ S      A     G  E K+ V +
Sbjct: 287 LK---------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

Query: 320 LQS 322
              
Sbjct: 338 FDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 4e-09
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 36/224 (16%)

Query: 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAG 171
                K  K   GH D +       L+     +VS S D ++++W+  TG C+       
Sbjct: 2   RRGELKSPKVLKGHDDHVITC----LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--- 54

Query: 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT------------- 218
           GH   V S     + I   ++          + +   T    + T               
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 114

Query: 219 -DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG 277
            D   +         + +   H   V C ++ G  ++S + D  + +W+P+ +       
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC----- 169

Query: 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321
               L         ++       F       G+ +  I VW+++
Sbjct: 170 ----LHTLQGHTNRVYS----LQFDGIHVVSGSLDTSIRVWDVE 205

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 22/241 (9%)

Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V       G   +V+G  +  ++V      K  ++ VGH   +   + +        +  
Sbjct: 19  VITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77

Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
             +       +    +          +         S    +    ++    +  +    
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 209 TYVEKSFTWT--------DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN 260
             V               D   K      +  +     H+N V   ++ G  ++S S+D 
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 197

Query: 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320
            I +W+ +             +      +          +   N    GN +  + +W++
Sbjct: 198 SIRVWDVETGNC---------IHTLTGHQSLTS----GMELKDNILVSGNADSTVKIWDI 244

Query: 321 Q 321
           +
Sbjct: 245 K 245

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 5e-11
 Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185
              D I++I+  P   SL++  S D S+ ++        +    +  +++ +L  +F  +
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217
              +I    +   +    +    ++   +   
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNE 99

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 6/163 (3%)

Query: 41  FNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100
              +++     F               G         +   ++E +   S    V    F
Sbjct: 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223

Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
              G      +       +L+         +N I   P +   + +A  D  +  WN+QT
Sbjct: 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT 282

Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
              I  F  A  + + V+ +    +    +     D+T K  +
Sbjct: 283 RKKIKNF--AKFNEDSVVKIACSDN---ILCLATSDDTFKTNA 320

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 2e-10
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
            +V+G  +  IR+ D+      +   GH + +  IR    +   +VS + D  +++W++ 
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLV 246

Query: 160 TGICILIFAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202
             +     AG         H   V  + F      +I S   D+T+ IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 5e-09
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 23/179 (12%)

Query: 88  TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA 147
             +         ++V+   +  I+V + S  +  ++  GH   I        +  LVVS 
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA---CLQYRDRLVVSG 194

Query: 148 SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207
           S D ++RLW+++ G C+ +             V     D  RI S   D  +K+W +   
Sbjct: 195 SSDNTIRLWDIECGACLRV------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA- 247

Query: 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
                                    +     HS  V   ++    I+S S D+ I++W+
Sbjct: 248 -------------ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 33/239 (13%)

Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
           +      ++   +         +VS  +D ++++W+  T  C  I     GH   VL + 
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQ 62

Query: 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--- 238
           +    I   +S        + + +   T +        L                +V   
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 239 --------------HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
                         H   V+   +   +I+S S D  I +W            T + ++ 
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS---------TCEFVRT 173

Query: 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343
               +  I  +++           G+ +  I +W+++    + +       +       
Sbjct: 174 LNGHKRGIACLQYRDRL----VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 228

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 33/213 (15%)

Query: 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166
           +  I V D+++                +         +VSAS D ++++WN  T   +  
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 173

Query: 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226
             G          +         + S   DNT+++W ++                     
Sbjct: 174 LNGHKRG------IACLQYRDRLVVSGSSDNTIRLWDIECGA------------------ 209

Query: 227 KYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286
                 + +   H   V C R+    I+S + D +I +W+               L+   
Sbjct: 210 -----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264

Query: 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319
                ++       F        + +  I +W+
Sbjct: 265 EHSGRVF----RLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 87  YTVSWACNVDGIPFLVAGGINGIIRVIDV---------SNEKLHKSFVGHGDSINEIRTQ 137
           +     C       +V+G  +G I+V D+         +     ++ V H   +  ++  
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-- 274

Query: 138 PLKPSLVVSASKDESVRLWN 157
                 +VS+S D+++ +W+
Sbjct: 275 -FDEFQIVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 4e-10
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
              VS  KD  +  W    G  I          + VLS D    D Y I +   D    +
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKY-IVTGSGDKKATV 332

Query: 202 WS 203
           + 
Sbjct: 333 YE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 6/155 (3%)

Query: 96  DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
           DG    V    + +I      + +   +   HG+ +  +         V +      V++
Sbjct: 20  DGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVKV 76

Query: 156 WNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 213
           W++        +         N + S    P     +   G  +T+ IW +      ++ 
Sbjct: 77  WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKA 135

Query: 214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248
             T +              V  +      +     
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 3/74 (4%)

Query: 85  SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV 144
               +S      G  + V+ G + ++                   S+            +
Sbjct: 265 ESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYI 321

Query: 145 VSASKDESVRLWNV 158
           V+ S D+   ++ V
Sbjct: 322 VTGSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 8e-10
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
           + +     +  V ++       + +      H  +V  VD+ P D  RI +CG D    +
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYV 77

Query: 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248
           W++K             +  ++          F     S  +    +
Sbjct: 78  WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
           LVA G +    +    +     SF G  D   +              +  E  +  + + 
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ--------RGLTARERFQNLDKKA 308

Query: 161 GICILIFAGAG---GHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMK 205
                  AGAG    H+N V  +       +   +  + GMD  + IW ++
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 22/232 (9%), Positives = 57/232 (24%), Gaps = 16/232 (6%)

Query: 92  ACNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK 149
           A N D    +     N  + + + S  K  +      H   +  +   P   + +V+   
Sbjct: 14  AWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGT 71

Query: 150 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209
           D +  +W ++             +R           +  + A       + I   ++   
Sbjct: 72  DRNAYVWTLKGRTWKPTLVILRINRAAR--CVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269
           +         + S   +        + +  S    C  +             I   E + 
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF----------SAYIKEVEERP 179

Query: 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321
                G         +       W        + +  A  + +  + + +  
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 21/208 (10%), Positives = 54/208 (25%), Gaps = 24/208 (11%)

Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG---------ICILIFAGAGGHRNE 176
            H   I  +       S  VS S D  +++W+ +               +      H + 
Sbjct: 12  AHDADIFSVS---ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236
           + +++    ++  +A+      +  +         E      +      +   +   +  
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYR---ITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 237 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 296
                    +R L   +++  V     +W+           T +      +       + 
Sbjct: 126 KWG---ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 297 F-----SCDFHYNAA-AIGNREGKIFVW 318
                 S D       A G   G + + 
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 32/244 (13%), Positives = 66/244 (27%), Gaps = 32/244 (13%)

Query: 99  PFLVAGGINGIIRVIDVSNEKL------------HKSFVGHGDSINEIRTQPLKPSLVVS 146
            F V+   +G ++V D                  HKS + H D +  I     +  LV +
Sbjct: 25  SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84

Query: 147 ASKDESVRLWNVQTGICILIFAG-------AGGHRNEVLSVDFHPSDIY----RIASCGM 195
            S    +  + +                  +   ++   ++ +  S+      R+ +  +
Sbjct: 85  TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-FIL 254
             T  IW       +     + +   +  PT  +Q  V      S +           I 
Sbjct: 145 KGTTYIWKF-----HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA 199

Query: 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314
           +   +  + + E             +           I  +KFS      A A  +    
Sbjct: 200 TGFNNGTVQISELSTLRPLY---NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256

Query: 315 IFVW 318
               
Sbjct: 257 CITL 260

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 2e-09
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
               +   D ++R+W+V T  C+  +      +     V    +   RI S  +D T+  
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTL-DKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 202 WSM 204
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQ--PLKPSLVVSASKDESVRLWN 157
                G +  IRV DV+  K  + +      +   +          ++S S D ++  + 
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

Query: 158 V 158
           +
Sbjct: 325 L 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 1/81 (1%)

Query: 138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMD 196
           P   ++     K   VR  +        +    G   + V +V F P      + S    
Sbjct: 27  PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86

Query: 197 NTVKIWSMKEFWTYVEKSFTW 217
             V +W               
Sbjct: 87  GKVIVWGWTFDKESNSVEVNV 107

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
           +  GH  S+  I     + + V++ + D+ +R+++      +L  +   GH   V ++ +
Sbjct: 7   TLRGHMTSV--ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---GHDGGVWALKY 61

Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242
                  + S   D TV++W +K+           +                        
Sbjct: 62  AHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS-------------------TVRCL 100

Query: 243 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302
                    +I++ S DN + +W+   +   P  G             +  +       H
Sbjct: 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160

Query: 303 YNAAAIGNREGKIFVW 318
             +    +  G I V 
Sbjct: 161 MASVRTVSGHGNIVVS 176

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 6/215 (2%)

Query: 89  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
           V      +   +++ G  + +IRV D  N+K      GH   +  ++       ++VS S
Sbjct: 15  VITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGS 71

Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
            D +VR+W+++ G C  +F G       +  V++         +   DNT+ +W + +  
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWKLPKES 129

Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
           +  +              +   + V +   H   V      G+ ++S S DN +++W+  
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 269 M-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302
             K      G  D +            I  S D  
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
            + F  H  +++ I T  +  +++VS S +    ++N+++G  +          +++ SV
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN--ILKDADQIWSV 330

Query: 181 DFHPSDIYRIASCGMDNTVKIW 202
           +F       +A+   D    + 
Sbjct: 331 NFKGK--TLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 101 LVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 156
           ++  G      + ++ S + +H + +   D I  +  +    +LV +  KD    L 
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE 350

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 7e-09
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
           + + SAS D+++++WNV T              ++ L + +       + S   +  +  
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINF 307

Query: 202 WSM 204
            + 
Sbjct: 308 VNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
             +   +   SV    V +     I+     H ++       P   Y  AS  +   V+I
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTE---HSHQTTVAKTSP-SGYYCASGDVHGNVRI 84

Query: 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248
           W   +    ++ +      P K  +   +     A         + +
Sbjct: 85  WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 91  WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD 150
              + DG   + +   +  I++ +V+  K+ K+        ++          +VS S +
Sbjct: 244 LTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 151 ESVRLWN 157
             +   N
Sbjct: 303 GFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 20/85 (23%)

Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242
              D  +IAS   D T+KIW++                     T  V+  + + +   + 
Sbjct: 246 WSPDGTKIASASADKTIKIWNVA--------------------TLKVEKTIPVGTRIEDQ 285

Query: 243 VDCNRWLGDFILSKSVDNEIVLWEP 267
                W    ++S S +  I    P
Sbjct: 286 QLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (123), Expect = 2e-08
 Identities = 17/186 (9%), Positives = 46/186 (24%), Gaps = 5/186 (2%)

Query: 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178
            + +   GH  +I  + +       + SA  +  +  W++ TGI   +F     H   + 
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMIT 59

Query: 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238
            +         + +   D+ +K+           K+                      + 
Sbjct: 60  GIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298
              ++          +  S ++  V      +  + G   + +                 
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 299 CDFHYN 304
                 
Sbjct: 178 HPAEIT 183

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (123), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
            + S D SV +WN+       I        + V SV +       I S G D+ +K W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 86  FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-SLV 144
              V+          L  G ++  + V +++    H   +    +++ + +      + +
Sbjct: 224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI 283

Query: 145 VSASKDESVRLWNV 158
           VSA +D +++ WNV
Sbjct: 284 VSAGQDSNIKFWNV 297

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 3e-08
 Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
            + S D ++ +++V+  + I+       H++ V ++ +       + S G D  +K W+
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (122), Expect = 3e-08
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
           ++++ K+  GH   I  +   PL     +S S D  +  W+  +            H N 
Sbjct: 2   HDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQ--------DHSNL 48

Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217
           ++S+D   +  Y   S      V   +  EF +  + +   
Sbjct: 49  IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 89

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 90  SWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
                      +  G ++  I +  V    K+ K+   H D +N +  +   PS +VS+ 
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSG 276

Query: 149 KDESVRLWNV 158
            D  ++ WNV
Sbjct: 277 ADACIKRWNV 286

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 5/225 (2%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           F V     G I ++D  ++K+ K     G +++  R        ++   +D  + + ++ 
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVI-DTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLW 91

Query: 160 TGICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217
                 +         R+   S      D Y IA         I   +        S   
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM-KEQSPGE 276
             + ++      +    IAS        N      +L  +  +   L    +       +
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211

Query: 277 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321
           G  D   +Y +   +        D      +     GK       
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG 256

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 23/236 (9%), Positives = 62/236 (26%), Gaps = 9/236 (3%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157
           +++A      + VID     + K       G +       P       + +K ES+   +
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 158 VQTGICILIFAGAGGHR--NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 215
           + TG  +     +        +      P D   +A       +++   +        + 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFE--VQPTRVAL 119

Query: 216 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPG 275
              +  S+         + + +   +         D  +       +V  +P    ++  
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 276 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIA 329
               D+L  +   E              +            +   +L++    +  
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 8/132 (6%)

Query: 74  LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE 133
           L  +   +      T  +    D  P        G++ +   + E   +           
Sbjct: 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS 245

Query: 134 IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193
               P K     +      +  ++++    I          +   SV+    D   +   
Sbjct: 246 TAVNPAK---TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVST-DGSTVWLG 297

Query: 194 GMDNTVKIWSMK 205
           G    +  +  +
Sbjct: 298 GALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 10/204 (4%), Positives = 45/204 (22%), Gaps = 5/204 (2%)

Query: 143 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202
            +++ ++ + + + + +      +           +     P      A+     ++   
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEI 262
            +    T             +   K +          +  +  +    +    +     +
Sbjct: 62  DLVTGETL----GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117

Query: 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322
            L++ +   +         +                 D H      G       +   ++
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA 177

Query: 323 SPPVLIARLICFSLHVKYNPQSVY 346
                   L  ++ H      +  
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATP 201

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 18/221 (8%), Positives = 47/221 (21%), Gaps = 13/221 (5%)

Query: 96  DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-----GDSINEIRTQPLKPSLVVSASKD 150
            G         +  +  ID+   +               S+      P   +L +  S  
Sbjct: 44  GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPV 103

Query: 151 ESVRLWNVQTGICILIFAGAGG-------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
                        + ++               ++  + +   D  ++   G D  V    
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDPE 162

Query: 204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIV 263
                          +  ++     V      + V +      R   D     +    ++
Sbjct: 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222

Query: 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304
             + +  E +  E     +  +           F       
Sbjct: 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 18/205 (8%), Positives = 45/205 (21%), Gaps = 5/205 (2%)

Query: 102 VAGGINGIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           +A   +  I V ++++E        V     +  +   P K  L V    +  V  + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219
                L FA        +  +       +          V +  +++             
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG- 126

Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279
                       P                L        +  +       ++   P     
Sbjct: 127 --LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 184

Query: 280 DILQKYPVPECDIWFIKFSCDFHYN 304
              ++Y     ++       +    
Sbjct: 185 HPNEQYAYCVNELNSSVDVWELKDP 209

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 6/129 (4%)

Query: 77  YVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136
                + E     + A   D         +      +D+   K H         +     
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258

Query: 137 QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196
           +  K    +       +  ++++    I     A    +    V F      ++   G  
Sbjct: 259 RSPKDPNQIYGV-LNRLAKYDLKQRKLI----KAANLDHTYYCVAFDK-KGDKLYLGGTF 312

Query: 197 NTVKIWSMK 205
           N + +++  
Sbjct: 313 NDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 23/237 (9%), Positives = 59/237 (24%), Gaps = 9/237 (3%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
           +++       + V+DV+++ ++KS  +            P   +  V  +    +   ++
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 159 QTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 215
            T         +         + S    P     + +                  +E   
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 216 TWTD-LPSKFPTKYVQFPVFIASVHSN---YVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271
           T          T  +   V++     +   YV         + +      + L     K 
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328
            S  +       + P  E  + +            A  +        +L++      
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 10/88 (11%)

Query: 121 HKSFVGHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178
           ++  +    SI            +    A +   +  ++V+T             +N + 
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-------EVKNNLT 318

Query: 179 SVDFHPSDIYRIASCGMDNTVKIWSMKE 206
            +     D   +     D  +  + +++
Sbjct: 319 DLRLSA-DRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 87  YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS 146
              S   + +   +       G++   DV   K+        +++ ++R        V+ 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSA-DRKTVMV 331

Query: 147 ASKDESVRLWNVQTG 161
              D  +  + ++  
Sbjct: 332 RKDDGKIYTFPLEKP 346

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 13/168 (7%)

Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
           F V     G I +ID S  ++       G +++  R        +    +D  V + ++ 
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLW 91

Query: 160 TGICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217
                 +         R+   S      D Y IA         I    E     +   T 
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG-ETLEPKKIQSTR 150

Query: 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW 265
                +           I + H           +FI++     +I+L 
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYR--------PEFIVNVKETGKILLV 190

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 9/104 (8%), Positives = 23/104 (22%), Gaps = 4/104 (3%)

Query: 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
           ++ S+ +++ + +V +                 +     P       +    N V I   
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSN----PMGAVISPDGTKVYVANAHSNDVSIIDT 61

Query: 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248
                        +           Q  V   +  +  V     
Sbjct: 62  ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS 105

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 5/119 (4%)

Query: 88  TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA 147
            +       G    +                      V +  +++ I     +       
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276

Query: 148 SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTVKIWSMK 205
           +    V + + +TG  +  F         + S++    +     A    D T+ I   +
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMGHE----IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.99
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.9
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.61
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.4
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.34
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.93
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.7
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.38
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.74
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.5
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.45
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.41
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.11
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.48
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.58
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.1
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.0
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.49
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.99

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-43  Score=291.07  Aligned_cols=277  Identities=14%  Similarity=0.237  Sum_probs=238.5

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      +..+.+..+ +|.+.|+|++|+|    ++++||+|+++.|+|||+..+.....+.......|...|.+++|+  |+++ +
T Consensus        40 ~~~~~~~~~-~H~~~V~~v~fs~----~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s--~dg~-~  111 (337)
T d1gxra_          40 RHARQINTL-NHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGC-T  111 (337)
T ss_dssp             SEEEEEEEE-CCSSCCCEEEECS----SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--TTSS-E
T ss_pred             CCceEEEEC-CCCCcEEEEEECC----CCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc--CCCC-E
Confidence            344556665 7999999999999    889999998655999999877665555555555688889888886  9998 9


Q ss_pred             EEEeecCCeEEEEEccCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          101 LVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      |++|+.||.|++||+...  +....+..|...+.+++|+| ++.++++++.|+.|++|++++++......   .|...|.
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~---~~~~~v~  187 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGAS  187 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEE
T ss_pred             EEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---ccccccc
Confidence            999999999999998754  45667788999999999999 88999999999999999999999888887   7999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      +++|++ ++..+++++.|+.|++||+++.+                       .+. ...|...|.+++|+  +++++++
T Consensus       188 ~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~-----------------------~~~-~~~~~~~i~~l~~~~~~~~l~~~  242 (337)
T d1gxra_         188 CIDISN-DGTKLWTGGLDNTVRSWDLREGR-----------------------QLQ-QHDFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             EEEECT-TSSEEEEEETTSEEEEEETTTTE-----------------------EEE-EEECSSCEEEEEECTTSSEEEEE
T ss_pred             cccccc-cccccccccccccccccccccce-----------------------eec-ccccccceEEEEEccccccccee
Confidence            999998 88999999999999999998832                       222 33578899999998  7899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEE
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSL  336 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  336 (346)
                      +.|+.|++||++..+          ......|...|.+++|+|++  ++|++++.||.|++||+.+++.+....+...+.
T Consensus       243 ~~d~~i~i~d~~~~~----------~~~~~~~~~~i~~v~~s~~g--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~  310 (337)
T d1gxra_         243 MESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL  310 (337)
T ss_dssp             ETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             ccccccccccccccc----------cccccccccccceEEECCCC--CEEEEEeCCCeEEEEECCCCCEEEEccCCCCEE
Confidence            999999999998765          23455688899999999999  799999999999999999999888888888899


Q ss_pred             EEEecCCCCC
Q 019117          337 HVKYNPQSVY  346 (346)
Q Consensus       337 ~~~~spdg~~  346 (346)
                      +++|+|||+|
T Consensus       311 ~~~~s~d~~~  320 (337)
T d1gxra_         311 SCDISVDDKY  320 (337)
T ss_dssp             EEEECTTSCE
T ss_pred             EEEEeCCCCE
Confidence            9999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-41  Score=274.11  Aligned_cols=270  Identities=23%  Similarity=0.394  Sum_probs=238.1

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      ..+|+||.++|++|+|+|    ++++||+|+.|+ |+|||+.+++.+..+..     |...|.++++.  +++. +++++
T Consensus        10 ~~~L~GH~~~I~~l~~sp----~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-----h~~~V~~~~~~--~~~~-~~~~~   77 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHP----VFSVMVSASEDATIKVWDYETGDFERTLKG-----HTDSVQDISFD--HSGK-LLASC   77 (317)
T ss_dssp             SCEEECCSSCEEEEEECS----SSSEEEEEESSSCEEEEETTTCCCCEEECC-----CSSCEEEEEEC--TTSS-EEEEE
T ss_pred             cEEEcCCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCCEEEEEeC-----CCCcEEEEeee--cccc-ccccc
Confidence            356899999999999999    789999999998 99999999988877764     67788888776  8898 99999


Q ss_pred             ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117          105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  184 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  184 (346)
                      ..++.+.+|+....+....+..|...+.++.|+| ++..+++++.|+.+++||+++++.+..+.   +|...+.+++|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  153 (317)
T d1vyhc1          78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQ  153 (317)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEc---cCCCcceeeeccc
Confidence            9999999999999998888899999999999999 88999999999999999999999999988   7999999999998


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---------------
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---------------  249 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------  249 (346)
                       ++.+|++++.|+.|++|++...                       .....+..|...+.++.++               
T Consensus       154 -~~~~l~~~~~d~~v~~~~~~~~-----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         154 -DGTLIASCSNDQTVRVWVVATK-----------------------ECKAELREHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             -TSSEEEEEETTSCEEEEETTTC-----------------------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             -CCCEEEEEeCCCeEEEEeeccc-----------------------eeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence             8999999999999999999883                       3344555566666666553               


Q ss_pred             -------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          250 -------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       250 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                             +.++++++.|+.|++||+++++         ++..+.+|...|.+++|+|++  ++|++|+.||.|++||+.+
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------CLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SCEEEEETTTEEEEECCTT
T ss_pred             eeeeccCCceeEeccCCCEEEEEECCCCc---------EEEEEeCCCCCEEEEEECCCC--CEEEEEECCCeEEEEECCC
Confidence                   4579999999999999999876         678888999999999999999  7999999999999999999


Q ss_pred             CCcceeee-eeeeEEEEEecCCCCC
Q 019117          323 SPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       323 ~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                      ++++..+. +.+.+++++|+|+|++
T Consensus       279 ~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         279 KRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             SCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            98777654 4567999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-40  Score=269.94  Aligned_cols=271  Identities=16%  Similarity=0.151  Sum_probs=221.3

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      ..+++.+..++++|    +++.||.+.++.|.+|++.+....+.+..     |...|.+++|+  |+|+ +|++|+.||.
T Consensus        14 ~~~r~~~~~~a~~~----~g~~l~~~~~~~v~i~~~~~~~~~~~~~~-----H~~~v~~~~~s--p~g~-~latg~~dg~   81 (311)
T d1nr0a1          14 RTARGTAVVLGNTP----AGDKIQYCNGTSVYTVPVGSLTDTEIYTE-----HSHQTTVAKTS--PSGY-YCASGDVHGN   81 (311)
T ss_dssp             CCCTTCCCCCEECT----TSSEEEEEETTEEEEEETTCSSCCEEECC-----CSSCEEEEEEC--TTSS-EEEEEETTSE
T ss_pred             CCCCCCeEEEEEcC----CCCEEEEEeCCEEEEEECCCCceeEEEcC-----CCCCEEEEEEe--CCCC-eEeccccCce
Confidence            34455677889999    78999999877799999988877776653     77889888886  9998 9999999999


Q ss_pred             EEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          110 IRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       110 i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      |++||+.+++..  ..+..|...|.+++|+| ++++|++++.  +..+++|++++++....+.   +|...|++++|+|+
T Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~---~h~~~v~~v~~~~~  157 (311)
T d1nr0a1          82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLT---GQARAMNSVDFKPS  157 (311)
T ss_dssp             EEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCC---CCSSCEEEEEECSS
T ss_pred             EeeeeeeccccccccccccccCccccccccc-ccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence            999999887643  55788999999999999 8888888875  4669999999999888887   79999999999994


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                      +...+++|+.|+.|++||+++                       .........|...|.++.|+  ++++++++.|+.|+
T Consensus       158 ~~~~l~sgs~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~  214 (311)
T d1nr0a1         158 RPFRIISGSDDNTVAIFEGPP-----------------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV  214 (311)
T ss_dssp             SSCEEEEEETTSCEEEEETTT-----------------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ceeeecccccccccccccccc-----------------------cccccccccccccccccccCcccccccccccccccc
Confidence            445688999999999999998                       34566777899999999998  88999999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee----eEEEEE
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC----FSLHVK  339 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~  339 (346)
                      +||+.++.......  .......+|...|.+++|+|++  ++|++|+.||.|+|||+++++++..+....    .+.++.
T Consensus       215 ~~d~~~~~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~--~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~  290 (311)
T d1nr0a1         215 LYNGVDGTKTGVFE--DDSLKNVAHSGSVFGLTWSPDG--TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII  290 (311)
T ss_dssp             EEETTTCCEEEECB--CTTSSSCSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             cccccccccccccc--ccccccccccccccccccCCCC--CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE
Confidence            99998875321111  1223345688899999999999  799999999999999999998766554332    234566


Q ss_pred             ecCC
Q 019117          340 YNPQ  343 (346)
Q Consensus       340 ~spd  343 (346)
                      |+++
T Consensus       291 ~~~~  294 (311)
T d1nr0a1         291 WTKQ  294 (311)
T ss_dssp             ECSS
T ss_pred             ecCC
Confidence            6554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-40  Score=272.13  Aligned_cols=252  Identities=16%  Similarity=0.340  Sum_probs=212.9

Q ss_pred             cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCC
Q 019117           19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (346)
                      ....++..++|+||.++|++|+|+|    ++.+||+|+.|+ |+|||+.+++.+..+..     |...|.+++|.  |++
T Consensus        41 ~~~~~~~~~tL~GH~~~I~~l~~s~----~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-----~~~~v~~v~~~--~~~  109 (340)
T d1tbga_          41 GRIQMRTRRTLRGHLAKIYAMHWGT----DSRLLVSASQDGKLIIWDSYTTNKVHAIPL-----RSSWVMTCAYA--PSG  109 (340)
T ss_dssp             CCCCCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTTTEEEEEEEC-----SCSCEEEEEEC--TTS
T ss_pred             cccceeeeEEECCCCCCEEEEEECC----CCCEEEEEECCCceeeeecccceeEEEEec-----ccccEEeeEee--ccc
Confidence            3456678889999999999999999    789999999998 99999999988777764     67788888776  999


Q ss_pred             CcEEEEeecCCeEEEEEccCcc----eeeee-----------------------------------------ccCCCceE
Q 019117           98 IPFLVAGGINGIIRVIDVSNEK----LHKSF-----------------------------------------VGHGDSIN  132 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~----~~~~~-----------------------------------------~~~~~~v~  132 (346)
                      . ++++|+.|+.+.+|+.....    ....+                                         ..+...+.
T Consensus       110 ~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (340)
T d1tbga_         110 N-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             S-EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             e-eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEe
Confidence            8 99999999999999965431    11111                                         12344567


Q ss_pred             EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeee
Q 019117          133 EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE  212 (346)
Q Consensus       133 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  212 (346)
                      ...+.+ ...++++++.|+.|++||+++++++..+.   +|...|++++|+| ++.+|++++.|+.|++||++....   
T Consensus       189 ~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~---  260 (340)
T d1tbga_         189 SLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQE---  260 (340)
T ss_dssp             EEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---
T ss_pred             eecccc-ccceeEEeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeeccccc---
Confidence            777777 78899999999999999999999999998   7999999999999 899999999999999999987331   


Q ss_pred             eceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc
Q 019117          213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC  290 (346)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  290 (346)
                                        ........+...|.++.|+  +++|++|+.||.|++||+.+++         .+..+.+|..
T Consensus       261 ------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~H~~  313 (340)
T d1tbga_         261 ------------------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---------RAGVLAGHDN  313 (340)
T ss_dssp             ------------------EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC---------EEEEECCCSS
T ss_pred             ------------------ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc---------EEEEEcCCCC
Confidence                              1112233466779999998  7899999999999999999876         7888899999


Q ss_pred             CeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          291 DIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       291 ~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      .|++++|+|++  .+|++|+.||.|+|||
T Consensus       314 ~V~~l~~s~d~--~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         314 RVSCLGVTDDG--MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred             CEEEEEEeCCC--CEEEEEccCCEEEEeC
Confidence            99999999999  7899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7e-40  Score=266.08  Aligned_cols=259  Identities=18%  Similarity=0.135  Sum_probs=208.8

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .....+.+.+|.+.|++++|+|    +|++||+|+.|+ |++||+.++....... +  ..|...|.+++|+  |+++ +
T Consensus        47 ~~~~~~~~~~H~~~v~~~~~sp----~g~~latg~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~v~~v~~s--~d~~-~  116 (311)
T d1nr0a1          47 SLTDTEIYTEHSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTTHILKTT-I--PVFSGPVKDISWD--SESK-R  116 (311)
T ss_dssp             CSSCCEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEESSSTTCCEEEE-E--ECSSSCEEEEEEC--TTSC-E
T ss_pred             CCceeEEEcCCCCCEEEEEEeC----CCCeEeccccCceEeeeeeeccccccccc-c--ccccCcccccccc--cccc-c
Confidence            3456667789999999999999    789999999998 9999998876543221 1  2367788888776  8998 8


Q ss_pred             EEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          101 LVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       101 l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      |++++.  +..+++|++++++....+.+|...|.+++|+|++...|++|+.|+.|++||+++++....+.   .|...|+
T Consensus       117 l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~---~~~~~i~  193 (311)
T d1nr0a1         117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EHTKFVH  193 (311)
T ss_dssp             EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CCSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccc---ccccccc
Confidence            888875  45699999999999999999999999999999444468899999999999999999998888   7999999


Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117          179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  256 (346)
Q Consensus       179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  256 (346)
                      ++.|+| ++.++++++.|+.|++||+..........                .......+|...|++++|+  +++|++|
T Consensus       194 ~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~----------------~~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         194 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFE----------------DDSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECB----------------CTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             ccccCc-ccccccccccccccccccccccccccccc----------------ccccccccccccccccccCCCCCEEEEE
Confidence            999999 89999999999999999998743211110                1111234688999999998  8899999


Q ss_pred             eecCeEEEEcCCCCCCCCCCccccccccccCCCc-CeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      +.||+|+|||+++++         ++..+..+.. ....+.+.+++  ..|++++.||.|++||.+
T Consensus       257 s~Dg~v~iwd~~t~~---------~~~~l~~~~~~~~~~~~~~~~~--~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         257 SADKTIKIWNVATLK---------VEKTIPVGTRIEDQQLGIIWTK--QALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTSEEEEEETTTTE---------EEEEEECCSSGGGCEEEEEECS--SCEEEEETTCCEEEEETT
T ss_pred             eCCCeEEEEECCCCc---------EEEEEECCCCccceEEEEEecC--CEEEEEECCCEEEEEeCC
Confidence            999999999999876         5556655432 23344555555  569999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-39  Score=272.60  Aligned_cols=286  Identities=21%  Similarity=0.332  Sum_probs=221.7

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee-------------cCCCccceEEEEEEEcCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-------------DEDKEESFYTVSWACNVD   96 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~   96 (346)
                      .+|.+.|+||+|+|    +|++||+|+++.|+|||+.+++.+..+....             ...+...|.+++|+  |+
T Consensus        59 ~~H~~~V~~l~fs~----dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~  132 (388)
T d1erja_          59 LDHTSVVCCVKFSN----DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PD  132 (388)
T ss_dssp             EECSSCCCEEEECT----TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TT
T ss_pred             CCCCCcEEEEEECC----CCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC--CC
Confidence            47999999999999    7899999985559999999888776654321             12355668888776  99


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  176 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  176 (346)
                      |+ +|++|+.||.|++||...++.+..+.+|...|.++.+++ ++..+++++.++.+++||.++........    +...
T Consensus       133 ~~-~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~  206 (388)
T d1erja_         133 GK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDG  206 (388)
T ss_dssp             SS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSC
T ss_pred             CC-cceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccc----cccc
Confidence            98 999999999999999999999999999999999999999 88999999999999999999988887776    4455


Q ss_pred             eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117          177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  254 (346)
Q Consensus       177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  254 (346)
                      ..++.+++.++.+|++++.|+.|++||++........                .........|...|.++.|+  +++|+
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----------------~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL----------------DSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE----------------C------CCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceee----------------ccccccccCCCCCEEEEEECCCCCEEE
Confidence            5666677668899999999999999999874321111                11223445688999999998  78999


Q ss_pred             EEeecCeEEEEcCCCCCCCCCC---ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-  330 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-  330 (346)
                      +++.|+.|++||+.+.+.....   ...........|...|.+++|+|++  .+|++|+.||.|++||+.+++++..+. 
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~sg~~dg~i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC--CEEEEEeCCCEEEEEECCCCcEEEEEeC
Confidence            9999999999999876532211   1122344556688899999999999  799999999999999999998766544 


Q ss_pred             eeeeEEEEE------ecCCCC
Q 019117          331 LICFSLHVK------YNPQSV  345 (346)
Q Consensus       331 ~~~~~~~~~------~spdg~  345 (346)
                      +.+.+.+++      |+|||+
T Consensus       349 H~~~V~~~~~~~~~~~spd~~  369 (388)
T d1erja_         349 HRNSVISVAVANGSSLGPEYN  369 (388)
T ss_dssp             CSSCEEEEEECSSCTTCTTCE
T ss_pred             CCCCEEEEEEecCcccCCCCC
Confidence            344577765      566765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=261.40  Aligned_cols=260  Identities=14%  Similarity=0.176  Sum_probs=216.1

Q ss_pred             ceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceE
Q 019117            9 EPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY   87 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~   87 (346)
                      ...+|.+...............+|.+.|.+++|+|    ++++|++++.|+ |++||+.......... +  ..+...+.
T Consensus        73 ~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~----dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~v~  145 (337)
T d1gxra_          73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPTPRIKAE-L--TSSAPACY  145 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC--EEEEE-E--ECSSSCEE
T ss_pred             EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC----CCCEEEEeecccccccccccccccccccc-c--cccccccc
Confidence            34566665433333333444578999999999999    789999999988 9999987544322111 1  12566777


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      .+++.  |++. ++++++.|+.|++|++.+++.......|...|.+++|++ ++..+++++.|+.|++||+++++.+..+
T Consensus       146 ~~~~~--~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~  221 (337)
T d1gxra_         146 ALAIS--PDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH  221 (337)
T ss_dssp             EEEEC--TTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccc--cccc-ccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceeeccc
Confidence            66665  8888 999999999999999999999999999999999999999 8899999999999999999999999888


Q ss_pred             cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117          168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  247 (346)
Q Consensus       168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  247 (346)
                      .    |...|.+++|+| ++.++++++.|+.|++||++...                        ......|...|.+++
T Consensus       222 ~----~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~------------------------~~~~~~~~~~i~~v~  272 (337)
T d1gxra_         222 D----FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPD------------------------KYQLHLHESCVLSLK  272 (337)
T ss_dssp             E----CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSC------------------------EEEECCCSSCEEEEE
T ss_pred             c----cccceEEEEEcc-cccccceeccccccccccccccc------------------------cccccccccccceEE
Confidence            6    889999999999 88999999999999999998732                        335567899999999


Q ss_pred             ec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          248 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       248 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      |+  +++|++++.|+.|++||+.+++         .+..+ .|...|.+++|+|++  ++|++|+.||.|+|||+
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~---------~~~~~-~~~~~v~~~~~s~d~--~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGA---------SIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCC---------EEEEE-ECSSCEEEEEECTTS--CEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCC---------EEEEc-cCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEE
Confidence            98  7899999999999999999876         34443 366799999999999  78999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-37  Score=255.72  Aligned_cols=261  Identities=16%  Similarity=0.130  Sum_probs=204.5

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      +.++|+|++|+|    ++++||+|+.++ |+||+...++.  +..+.     .|...|.+++|+  |+++ +|++|+.|+
T Consensus         6 ~~~pIt~~~~s~----dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-----gH~~~V~~l~fs--p~~~-~l~s~s~D~   73 (371)
T d1k8kc_           6 LVEPISCHAWNK----DRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWA--PDSN-RIVTCGTDR   73 (371)
T ss_dssp             CSSCCCEEEECT----TSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEE--TTTT-EEEEEETTS
T ss_pred             CCCCeEEEEECC----CCCEEEEEeCCCEEEEEECCCCCEEEEEEec-----CCCCCEEEEEEC--CCCC-EEEEEECCC
Confidence            357899999999    789999999988 99999876653  33333     378899999887  8998 999999999


Q ss_pred             eEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec-ccCCCCcceEEEEecCC
Q 019117          109 IIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA-GAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       109 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  185 (346)
                      .|++||+.+++.  ...+.+|...|.+++|+| +++.|++++.|++|++|++.......... ....|...|.+++|+| 
T Consensus        74 ~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-  151 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-  151 (371)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-
T ss_pred             eEEEEeeccccccccccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccc-
Confidence            999999987653  445677899999999999 88999999999999999987654332221 1226889999999999 


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV  263 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~  263 (346)
                      ++.+|++|+.|+.|++||+............     ...........+.....|...|.+++|+  +++|++++.|+.|+
T Consensus       152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~  226 (371)
T d1k8kc_         152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT-----PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC  226 (371)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCB-----TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             cccceeccccCcEEEEEeeccCccccccccc-----cccccccceeeeeeccCccCcEEEEEeecccccccccccCCcce
Confidence            8999999999999999998763321111000     0001111223456677899999999998  78999999999999


Q ss_pred             EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      +||+..++         .+..+..|..+|.+++|+|++  .+|++|+ |+.+++|.....
T Consensus       227 iwd~~~~~---------~~~~~~~~~~~v~s~~fs~d~--~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         227 LADADKKM---------AVATLASETLPLLAVTFITES--SLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             EEEGGGTT---------EEEEEECSSCCEEEEEEEETT--EEEEEET-TSSCEEEEEETT
T ss_pred             EEeeeccc---------ceeeeecccccceeeeecCCC--CEEEEEc-CCceEEEEeeCC
Confidence            99998776         677888899999999999998  5777655 677777665543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-37  Score=250.69  Aligned_cols=261  Identities=14%  Similarity=0.117  Sum_probs=204.5

Q ss_pred             ceeeeeecccC-CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeee---ecCCCccceEEEEEEEcCC
Q 019117           22 EYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSY---VDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        22 ~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~   96 (346)
                      .......+.+| ...|++++|+|..  ++.+||+|+.|+ |+|||+..+.....+...   ....+...|.+++|.  ++
T Consensus        51 ~~~~~~~~~gh~~~~v~~v~fsP~~--~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~  126 (325)
T d1pgua1          51 KVPPVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FE  126 (325)
T ss_dssp             SSCSEEEECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TT
T ss_pred             CccceEEEeCCCCCCEEEEEEeeCC--CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC--CC
Confidence            34445566777 4689999999843  578999999998 999999876654444322   122466788888876  88


Q ss_pred             CCcEEEEee--cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117           97 GIPFLVAGG--INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR  174 (346)
Q Consensus        97 ~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  174 (346)
                      ++ +|++++  .++.+++|++++++.+..+.+|...|.+++|+|.+..++++++.|+.+++||+...+....+.....|.
T Consensus       127 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  205 (325)
T d1pgua1         127 GR-RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  205 (325)
T ss_dssp             SS-EEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             CC-ccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCC
Confidence            98 777665  467899999999999999999999999999999555568899999999999999888877776655788


Q ss_pred             cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce----EEEEec-
Q 019117          175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV----DCNRWL-  249 (346)
Q Consensus       175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~-  249 (346)
                      ..|++++|+|+.+.++++++.|+.|++||+++                       ...+..+..|...+    .++.|. 
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-----------------------~~~~~~l~~~~~~v~~~~~s~~~~d  262 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-----------------------GEFLKYIEDDQEPVQGGIFALSWLD  262 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTT-----------------------CCEEEECCBTTBCCCSCEEEEEESS
T ss_pred             CccEEeeeccccceeccccccccceeeeeecc-----------------------ccccccccccccccccceeeeeccC
Confidence            99999999996678999999999999999987                       33455666666655    445554 


Q ss_pred             CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      +++|++++.|+.|+|||+++++         ++..+..+..  .+..+++.+.+. .+|++++.||.|++||+
T Consensus       263 g~~l~s~s~D~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         263 SQKFATVGADATIRVWDVTTSK---------CVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SSEEEEEETTSEEEEEETTTTE---------EEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CCEEEEEeCCCeEEEEECCCCC---------EEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            7899999999999999999876         5555554433  344555555443 37899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.3e-36  Score=242.73  Aligned_cols=267  Identities=9%  Similarity=0.095  Sum_probs=207.0

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      ++.+.++||.++|++|+|+|    ++++||+|+.|+ |++||+.+++....+.    ..|...|.+++|.  |+|.  ++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~----dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~----~~h~~~v~~v~~~--~~g~--~~   70 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSA----DGKTLFSADAEGHINSWDISTGISNRVFP----DVHATMITGIKTT--SKGD--LF   70 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEECSS----CSCSSCEEEEEEC--TTSC--EE
T ss_pred             ccceEcCCCCCCcEEEEECC----CCCEEEEEcCCCeEEEEECCCCcEEEEEc----CCCCCcEEEEEee--ccce--ee
Confidence            45678899999999999999    789999999998 9999999888766553    2377889888876  8886  55


Q ss_pred             EeecCCeEEEEEccCcce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          103 AGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      +++.|+.+++|+......   ......+...+.+++|+| ++..+++++ ++.+.+|+..  +.....     ....+.+
T Consensus        71 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~--~~~~~~-----~~~~~~~  141 (299)
T d1nr0a2          71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHG--KLTEVP-----ISYNSSC  141 (299)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETT--EEEEEE-----CSSCEEE
T ss_pred             cccceeeEEEeccCCcccccccccccccccccccccccc-ccccccccc-cccccccccc--cccccc-----ccccccc
Confidence            666799999999865432   223345778899999999 777776665 5789999854  332222     4456789


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      ++|+| ++.++++++.|+.|++||+++...                      .......|...|.+++|+  +++|++++
T Consensus       142 ~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~  198 (299)
T d1nr0a2         142 VALSN-DKQFVAVGGQDSKVHVYKLSGASV----------------------SEVKTIVHPAEITSVAFSNNGAFLVATD  198 (299)
T ss_dssp             EEECT-TSCEEEEEETTSEEEEEEEETTEE----------------------EEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccc-cccccccccccccccccccccccc----------------------cccccccccccccccccccccccccccc
Confidence            99999 899999999999999999987321                      122445688999999998  78999999


Q ss_pred             ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee----e
Q 019117          258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI----C  333 (346)
Q Consensus       258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~  333 (346)
                      .|+.|++||+.++..      ......+..|...|.+++|+|++  .+|++|+.||.|++||+.++.........    .
T Consensus       199 ~d~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  270 (299)
T d1nr0a2         199 QSRKVIPYSVANNFE------LAHTNSWTFHTAKVACVSWSPDN--VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS  270 (299)
T ss_dssp             TTSCEEEEEGGGTTE------ESCCCCCCCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS
T ss_pred             ccccccccccccccc------ccccccccccccccccccccccc--cceEEEcCCCEEEEEECCCCCcceEEEecCCCCC
Confidence            999999999987652      22345667788999999999999  79999999999999999987654433222    2


Q ss_pred             eEEEEEecC
Q 019117          334 FSLHVKYNP  342 (346)
Q Consensus       334 ~~~~~~~sp  342 (346)
                      .+..+.|.+
T Consensus       271 ~v~~~~~~~  279 (299)
T d1nr0a2         271 SVNSVIWLN  279 (299)
T ss_dssp             CEEEEEEEE
T ss_pred             cEEEEEECC
Confidence            355555544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-36  Score=244.23  Aligned_cols=247  Identities=21%  Similarity=0.347  Sum_probs=217.4

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .++...+.+|.+.|.+++|+|    ++.+++++..+. +.+|+.........+..     +...+.++.+.  +++. .+
T Consensus        49 ~~~~~~~~~h~~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~-~~  116 (317)
T d1vyhc1          49 GDFERTLKGHTDSVQDISFDH----SGKLLASCSADMTIKLWDFQGFECIRTMHG-----HDHNVSSVSIM--PNGD-HI  116 (317)
T ss_dssp             CCCCEEECCCSSCEEEEEECT----TSSEEEEEETTSCCCEEETTSSCEEECCCC-----CSSCEEEEEEC--SSSS-EE
T ss_pred             CCEEEEEeCCCCcEEEEeeec----cccccccccccccccccccccccccccccc-----ccccceeeecc--CCCc-eE
Confidence            456778899999999999999    788999998888 88888776665544432     55666666665  8888 99


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ++++.|+.+++||+.+++.+..+.+|...+.+++|+| ++.+|++++.|+.|++|++.+++.+..+.   +|...+.+++
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~  192 (317)
T d1vyhc1         117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVECIS  192 (317)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEE
T ss_pred             EeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEe---cCCCCceEEE
Confidence            9999999999999999999999999999999999999 88999999999999999999999999888   7899999999


Q ss_pred             ecCC-------------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          182 FHPS-------------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       182 ~~~~-------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      |+|.                   .+.++++++.|+.|++||+++                       ..++..+..|...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----------------------~~~~~~~~~~~~~  249 (317)
T d1vyhc1         193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----------------------GMCLMTLVGHDNW  249 (317)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-----------------------TEEEEEEECCSSC
T ss_pred             EeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-----------------------CcEEEEEeCCCCC
Confidence            9873                   234789999999999999988                       4567788899999


Q ss_pred             eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      |.++.|+  +++|++++.||.|++||+.+++         ++..+.+|...|++++|+|++  ++|++|+.||.|+|||
T Consensus       250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~V~~~~~s~~~--~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEeC
Confidence            9999998  7899999999999999999876         678888999999999999999  7899999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-36  Score=249.55  Aligned_cols=256  Identities=20%  Similarity=0.331  Sum_probs=206.2

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING  108 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  108 (346)
                      .+|...|++++|+|    ++++|++|+.|+ |++|+...++....+..     |...|.++++.  +++. .+++++.++
T Consensus       118 ~~~~~~V~~l~~s~----~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~~~~~~~~~  185 (388)
T d1erja_         118 PSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQG-----HEQDIYSLDYF--PSGD-KLVSGSGDR  185 (388)
T ss_dssp             -CCCCBEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--TTSS-EEEEEETTS
T ss_pred             cCCCCCEEEEEECC----CCCcceeccccccccccccccccccccccc-----ccccccccccc--cccc-cccccccce
Confidence            56788899999999    789999999999 99999988877666553     67788888776  8888 999999999


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc----cCCCCcceEEEEecC
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----AGGHRNEVLSVDFHP  184 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~  184 (346)
                      .+++||..+.........+. ...++.+.+.++.+|++++.|+.|++||.+++..+..+..    ..+|...|++++|+|
T Consensus       186 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             EEEEEETTTTEEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             eeeeeecccccccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence            99999999888777776554 4556666665889999999999999999999887776643    125788999999999


Q ss_pred             CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeE
Q 019117          185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI  262 (346)
Q Consensus       185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i  262 (346)
                       ++.+|++++.|+.|++||++.........           .............|...|.+++|+  +++|++|+.||.|
T Consensus       265 -~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         265 -DGQSVVSGSLDRSVKLWNLQNANNKSDSK-----------TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             -TSSEEEEEETTSEEEEEEC--------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             -CCCEEEEEECCCcEEEEeccCCccccccc-----------cccccceeeecccccceEEEEEECCCCCEEEEEeCCCEE
Confidence             89999999999999999998743211110           111123455667889999999998  8899999999999


Q ss_pred             EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe------ecCCcceEEEEcCCCcEEEEEcC
Q 019117          263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS------CDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ++||+++++         ++..+.+|.+.|.+++++      |++  .+|++|+.||.|+||+++
T Consensus       333 ~vwd~~~~~---------~~~~l~~H~~~V~~~~~~~~~~~spd~--~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         333 LFWDKKSGN---------PLLMLQGHRNSVISVAVANGSSLGPEY--NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEETTTCC---------EEEEEECCSSCEEEEEECSSCTTCTTC--EEEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCc---------EEEEEeCCCCCEEEEEEecCcccCCCC--CEEEEEeCCCEEEEEeee
Confidence            999999887         788899999999999864      566  799999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-35  Score=246.34  Aligned_cols=265  Identities=14%  Similarity=0.116  Sum_probs=203.8

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      .++.....|++|.++|++|+|+|    ++++|++++.|+ |++||+.++.....+..   ..+...|.+++|.  |+++ 
T Consensus        39 ~~~~~~~~l~gH~~~V~~l~fsp----~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~---~~~~~~v~~i~~~--p~~~-  108 (371)
T d1k8kc_          39 NKWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGRTWKPTLVI---LRINRAARCVRWA--PNEK-  108 (371)
T ss_dssp             TEEEEEEEEECCSSCEEEEEEET----TTTEEEEEETTSCEEEEEEETTEEEEEEEC---CCCSSCEEEEEEC--TTSS-
T ss_pred             CCEEEEEEecCCCCCEEEEEECC----CCCEEEEEECCCeEEEEeeccccccccccc---ccccccccccccc--cccc-
Confidence            45667788899999999999999    789999999998 99999987665444332   2367788888876  8998 


Q ss_pred             EEEEeecCCeEEEEEccCcce----eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC--------------
Q 019117          100 FLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--------------  161 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------  161 (346)
                      +|++++.|+.|++|++.....    ......|...|.+++|+| ++.+|++|+.|++|++||+...              
T Consensus       109 ~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~  187 (371)
T d1k8kc_         109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK  187 (371)
T ss_dssp             EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred             cceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCcccccccccccccc
Confidence            999999999999999877653    234457889999999999 8899999999999999998643              


Q ss_pred             ----eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          162 ----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       162 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                          +.+....   .|...|.+++|+| ++.+|++++.|+.|++||+..                       ...+..+.
T Consensus       188 ~~~~~~~~~~~---~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~-----------------------~~~~~~~~  240 (371)
T d1k8kc_         188 MPFGELMFESS---SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK-----------------------KMAVATLA  240 (371)
T ss_dssp             CCTTCEEEECC---CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG-----------------------TTEEEEEE
T ss_pred             ccceeeeeecc---CccCcEEEEEeec-ccccccccccCCcceEEeeec-----------------------ccceeeee
Confidence                2333334   6889999999999 889999999999999999988                       34567788


Q ss_pred             ecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCC---------CCCc-----------------------ccccccc
Q 019117          238 VHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQS---------PGEG-----------------------TADILQK  284 (346)
Q Consensus       238 ~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~-----------------------~~~~~~~  284 (346)
                      .|..+|.++.|+ ...+++++.|+.+++|........         ....                       .......
T Consensus       241 ~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (371)
T d1k8kc_         241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  320 (371)
T ss_dssp             CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             cccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence            899999999998 445555666887777765432110         0000                       0000011


Q ss_pred             ccCCCcCeeEEEEeecCCc--ceEEEEcCCCcEEEEEcCCC
Q 019117          285 YPVPECDIWFIKFSCDFHY--NAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ...|.+.|+++++.+.+..  ..+++++.||.|++||+++.
T Consensus       321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            1237889999999986642  35899999999999999764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=239.66  Aligned_cols=270  Identities=16%  Similarity=0.310  Sum_probs=207.0

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP   99 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (346)
                      .++++...|+||.+.|.+ ++++    +|++||||+.|+ |+|||+.+++.+..+..     |...|.++++.  ++   
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~----~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-----h~~~V~~v~~~--~~---   68 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-----HTGGVWSSQMR--DN---   68 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEE----ETTEEEEEETTSCEEEEETTTCCEEEECCC-----CSSCEEEEEEE--TT---
T ss_pred             CCCCcCEEECCcCCceEE-EEEE----CCCEEEEEeCCCeEEEEECCCCCEEEEEeC-----CCCCEEEEEeC--CC---
Confidence            346777889999999865 4666    578999999999 99999999988777654     77889888875  43   


Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceE--------------------------------------EEEEeCCCC
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN--------------------------------------EIRTQPLKP  141 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~~~~  141 (346)
                      +|++|+.|+.+++|+............+...+.                                      .....+ ..
T Consensus        69 ~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (342)
T d2ovrb2          69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DG  147 (342)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CS
T ss_pred             ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-cc
Confidence            899999999999999876543322222211111                                      111222 45


Q ss_pred             ceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCC
Q 019117          142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP  221 (346)
Q Consensus       142 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  221 (346)
                      ..+++++.|+.|++||.+..+.+..+.   +|...+..+.+   ++.++++++.||.|++||++.               
T Consensus       148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~---------------  206 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET---------------  206 (342)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT---------------
T ss_pred             ceeeeecCCCeEEEeecccceeeEEEc---CcccccccccC---CCCEEEEEeCCCeEEEeeccc---------------
Confidence            678889999999999999988888887   68777766655   567899999999999999988               


Q ss_pred             CCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117          222 SKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                              ...+.....|...+.++.+++++|++++.|+.|++||+...+.      ...+.....|...+.++.++  +
T Consensus       207 --------~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~--~  270 (342)
T d2ovrb2         207 --------GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC------LQTLQGPNKHQSAVTCLQFN--K  270 (342)
T ss_dssp             --------CCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE------EEEECSTTSCSSCEEEEEEC--S
T ss_pred             --------ceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccc------cccccccceeeeceeecccC--C
Confidence                    4456778889999999999999999999999999999988762      12233333455566666554  4


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCCcceeeee------eeeEEEEEecCCCC
Q 019117          302 HYNAAAIGNREGKIFVWELQSSPPVLIARL------ICFSLHVKYNPQSV  345 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~spdg~  345 (346)
                        .++++|+.||.|++||+++++.+..+..      .+.+++++|+|++.
T Consensus       271 --~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         271 --NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  318 (342)
T ss_dssp             --SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             --CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC
Confidence              5799999999999999999987665432      23589999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-35  Score=243.66  Aligned_cols=265  Identities=19%  Similarity=0.334  Sum_probs=187.5

Q ss_pred             eeecccCCCce-EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           26 TNKLQEGKRPL-YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        26 ~~~~~~h~~~v-~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ..+|+||.+.| +|++|      ++++||+|+.|+ |+|||+.+++.+..+..     |...|.+++|+  +++  +|++
T Consensus         5 ~~tL~GH~~~vitc~~~------~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-----H~~~V~~l~~s--~~~--~l~s   69 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF------EDNYVITGADDKMIRVYDSINKKFLLQLSG-----HDGGVWALKYA--HGG--ILVS   69 (355)
T ss_dssp             EEEEECCSSSCEEEEEE------ETTEEEEEETTTEEEEEETTTTEEEEEEEC-----CSSCEEEEEEE--TTT--EEEE
T ss_pred             cEEECCcCCCcEEEEEE------CCCEEEEEeCCCeEEEEECCCCcEEEEEEC-----CCCCEEEEEEc--CCC--EEEE
Confidence            45689999886 56655      358999999998 99999999988887764     78889999886  654  7999


Q ss_pred             eecCCeEEEEEccCcceeeeeccC--CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-----------
Q 019117          104 GGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-----------  170 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------  170 (346)
                      |+.|+.|++|+....+.......+  ........+.+ ++..+++++.|+.|++||+++..........           
T Consensus        70 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  148 (355)
T d1nexb2          70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  148 (355)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTT
T ss_pred             Eeccccccccccccccccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccc
Confidence            999999999999888766555433  33344555666 6777888888888888887654322111100           


Q ss_pred             -------------------------------------------------CCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          171 -------------------------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       171 -------------------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                                                                       .++...+.++.++| .+.++++++.|+.|++
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i  227 (355)
T d1nexb2         149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRI  227 (355)
T ss_dssp             TCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred             cccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEe
Confidence                                                             02344445555555 5555555555555555


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      ||+++                       ...+..+..|...|.++.+++++|++++.||.|++||+++..          
T Consensus       228 ~d~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------  274 (355)
T d1nexb2         228 WDLEN-----------------------GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS----------  274 (355)
T ss_dssp             EETTT-----------------------CCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC----------
T ss_pred             eeccc-----------------------cccccccccccccccccccccceeeeeecccccccccccccc----------
Confidence            55555                       345667888999999999999999999999999999998754          


Q ss_pred             cccccCCCcCeeEE-EEeecCCcceEEEEcCCCcEEEEEcCCCCccee--eeeeeeEEEEEecCCC
Q 019117          282 LQKYPVPECDIWFI-KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI--ARLICFSLHVKYNPQS  344 (346)
Q Consensus       282 ~~~~~~~~~~v~~~-~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~spdg  344 (346)
                       ..+..|...+..+ .+++++  .+|++| .||.|++||+++++++..  ..+...+.+++|+|+.
T Consensus       275 -~~~~~~~~~~~~~~~~~~~~--~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~  336 (355)
T d1nexb2         275 -RKFSYHHTNLSAITTFYVSD--NILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT  336 (355)
T ss_dssp             -EEEEEECTTCCCCCEEEECS--SEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred             -eecccccCCceEEEEEcCCC--CEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence             2334455555555 456666  455555 589999999999987642  3345678999999863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-35  Score=237.53  Aligned_cols=257  Identities=16%  Similarity=0.156  Sum_probs=196.8

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI  113 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  113 (346)
                      .+++++|+|    +++.||.++.+.+.++.+..... ......+.. .+...|++++|++..++. +|++|+.||+|+||
T Consensus        19 ~~t~l~~~~----~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~g-h~~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iW   92 (325)
T d1pgua1          19 FTTHLSYDP----TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVW   92 (325)
T ss_dssp             CCCCCEEET----TTTEEEEEETTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCC-EEEEEETTSEEEEE
T ss_pred             CeEEEEECC----CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeC-CCCCCEEEEEEeeCCCCC-EEEEEeCCCCEEEe
Confidence            467899999    78899998877754444332221 112222211 135679999988555777 99999999999999


Q ss_pred             EccCccee--------eeeccCCCceEEEEEeCCCCceEEEee--CCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117          114 DVSNEKLH--------KSFVGHGDSINEIRTQPLKPSLVVSAS--KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       114 d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      |+..++..        ..+..|.++|.+++|++ ++.++++++  .++.+++|+.++++.+..+.   +|...|++++|+
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~  168 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS---GHSQRINACHLK  168 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECC---SCSSCEEEEEEC
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeee---eccccccccccc
Confidence            98765432        23456888999999999 778777665  46789999999999999988   799999999999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecC
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDN  260 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~  260 (346)
                      |.+..++++++.|+.|++||+...+.                    .........|...|.+++|+   +.++++++.|+
T Consensus       169 ~~~~~~~~~~~~d~~v~~~d~~~~~~--------------------~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         169 QSRPMRSMTVGDDGSVVFYQGPPFKF--------------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEE--------------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             ccccceEEEeeccccccccccccccc--------------------ceecccccCCCCccEEeeeccccceecccccccc
Confidence            95556788999999999999877332                    11122234677889999997   57999999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe---ecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS---CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      .|++||+++++         .+..+.+|...+..+.|+   |++  .+|++++.|+.|+|||+++++++..+...
T Consensus       229 ~i~iwd~~~~~---------~~~~l~~~~~~v~~~~~s~~~~dg--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         229 KISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWLDS--QKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             CEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEESSS--SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ceeeeeecccc---------ccccccccccccccceeeeeccCC--CEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            99999998876         677777777777766666   566  68999999999999999999877665543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=230.94  Aligned_cols=292  Identities=11%  Similarity=0.001  Sum_probs=207.9

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      +++++.+++|++.|++|+|+|    ++++||+|+.|+ |+|||+..+.....+....  .|...|.+++|.  +++..+|
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp----~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~f~--~~~~~~l   72 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI--DNTDLQI   72 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEG----GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE--ESSSEEE
T ss_pred             CCeEEcCCCCCCCEEEEEEeC----CCCEEEEEECCCeEEEEEccCCCcceEEEEec--CCCCCEEEEEEe--CCCCCEE
Confidence            356777899999999999999    789999999998 9999998776554444322  278899999887  5544489


Q ss_pred             EEeecCCeEEEEEccCcceeeeeccCCCce-EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-cCC--CCcce
Q 019117          102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSI-NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGG--HRNEV  177 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~--~~~~v  177 (346)
                      ++|+.||.|++|++...........+.... ....+.+ +...+++++.|+++++||++.+........ ...  .....
T Consensus        73 ~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeeccccccccccee
Confidence            999999999999998887766665554443 4444555 788999999999999999865433222211 001  22334


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEE
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFIL  254 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~  254 (346)
                      ..+.+.+ ....+++++.|+.|++||++......                    .......+...+.+..+.   +..++
T Consensus       152 ~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         152 KIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDN--------------------GTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             CEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCC--------------------CEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             eeeeeec-cCCceeeecCCCcEEEEecccCcccc--------------------eeeeecccccceeeeEeecCCCCEEE
Confidence            5566666 77889999999999999998733211                    111222333344444443   77999


Q ss_pred             EEeecCeEEEEcCCCCCCCCCCccc------cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117          255 SKSVDNEIVLWEPKMKEQSPGEGTA------DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       255 ~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (346)
                      +++.||.+.+|+.............      ........|...+.+++|+|++  .+|++|+.||.|++||+++++.+..
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~lasg~~Dg~v~vWD~~~~~~l~~  288 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT--CCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc--cEEEEECCCCEEEEEECCCCcEEEE
Confidence            9999999999998765432221111      1122334566789999999999  7999999999999999999876655


Q ss_pred             eeeeeeEEEEEecCCCCC
Q 019117          329 ARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       329 ~~~~~~~~~~~~spdg~~  346 (346)
                      +........++|+|+|++
T Consensus       289 ~~~~~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         289 FAKFNEDSVVKIACSDNI  306 (342)
T ss_dssp             CCCCSSSEEEEEEECSSE
T ss_pred             ecCCCCCEEEEEEeCCCE
Confidence            443334556788888763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-33  Score=232.06  Aligned_cols=229  Identities=16%  Similarity=0.218  Sum_probs=190.5

Q ss_pred             CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117           81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT  160 (346)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  160 (346)
                      +|.+.|++++|+  |+++ +|++|+.||+|+|||+.+++.+..+..|...|.+++|+| ++.++++|+.|+.+.+|+...
T Consensus        53 GH~~~I~~l~~s--~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          53 GHLAKIYAMHWG--TDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             CCSSCEEEEEEC--TTSS-EEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSS
T ss_pred             CCCCCEEEEEEC--CCCC-EEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccc
Confidence            488999998887  8998 999999999999999999999999999999999999999 899999999999999999764


Q ss_pred             Ce----eEEEeccc--------------------------------------CCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117          161 GI----CILIFAGA--------------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNT  198 (346)
Q Consensus       161 ~~----~~~~~~~~--------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~  198 (346)
                      ..    ....+...                                      ..+...+....+.+ ...++++++.|+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~  207 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDAS  207 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTE
T ss_pred             cccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCce
Confidence            32    11111100                                      03445667777777 8889999999999


Q ss_pred             EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117          199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  276 (346)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  276 (346)
                      |++||+++                       ..++..+..|...|++++|+  +++|++++.|+.|++||++..+..   
T Consensus       208 v~i~d~~~-----------------------~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~---  261 (340)
T d1tbga_         208 AKLWDVRE-----------------------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL---  261 (340)
T ss_dssp             EEEEETTT-----------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---
T ss_pred             EEEEECCC-----------------------CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc---
Confidence            99999988                       44667788899999999998  789999999999999999876520   


Q ss_pred             ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117          277 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY  346 (346)
Q Consensus       277 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~  346 (346)
                          .......+...|.+++|+|++  .+|++|+.||.|++||+.+++++..+. +.+.+++++|+|||++
T Consensus       262 ----~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         262 ----MTYSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             ----EEECCTTCCSCEEEEEECSSS--CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             ----cccccccccCceEEEEECCCC--CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence                122234456789999999999  799999999999999999998776554 4567999999999975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=226.25  Aligned_cols=246  Identities=17%  Similarity=0.330  Sum_probs=197.9

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .++.+..+.+|...|+|++|      ++++||+|+.|+ |+|||+.+++.+..+..     |...|.+++|    +++ +
T Consensus         4 ~~~~i~~~~~~~~~V~c~~~------d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-----H~~~V~~v~~----~~~-~   67 (293)
T d1p22a2           4 SLQRIHCRSETSKGVYCLQY------DDQKIVSGLRDNTIKIWDKNTLECKRILTG-----HTGSVLCLQY----DER-V   67 (293)
T ss_dssp             CCCCEECCCSSCCCEEEEEC------CSSEEEEEESSSCEEEEESSSCCEEEEECC-----CSSCEEEEEC----CSS-E
T ss_pred             eEEEEeccCCCCCCEEEEEE------cCCEEEEEeCCCeEEEEECCCCcEEEEEec-----CCCCEeeeec----ccc-e
Confidence            44555667889999999765      468999999999 99999999988887764     7778876654    566 9


Q ss_pred             EEEeecCCeEEEEEccCccee-------------------------------------------eeeccCCCceEEEEEe
Q 019117          101 LVAGGINGIIRVIDVSNEKLH-------------------------------------------KSFVGHGDSINEIRTQ  137 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~-------------------------------------------~~~~~~~~~v~~~~~~  137 (346)
                      |++|+.|+.|++|++..+...                                           ..+..|...+..+.+.
T Consensus        68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec
Confidence            999999999999998654321                                           1123355566666665


Q ss_pred             CCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceee
Q 019117          138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW  217 (346)
Q Consensus       138 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  217 (346)
                      +   ..+++++.|+.|++||+++++.+..+.   ++...+..+.+++   ..+++++.|+.|++||++.           
T Consensus       148 ~---~~~~~~s~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~-----------  207 (293)
T d1p22a2         148 D---KYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC-----------  207 (293)
T ss_dssp             T---TEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEET---TEEEEEETTSCEEEEETTT-----------
T ss_pred             c---cccccccCCCceeeecCCCCcEEEEEc---ccccccccccCCC---CeEEEecCCCEEEEEeccc-----------
Confidence            4   578889999999999999999999888   7888898888763   5799999999999999998           


Q ss_pred             cCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE
Q 019117          218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  297 (346)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  297 (346)
                                  ...+.....|...+..+.+.+.+|++++.||.|++||+..............+..+.+|.+.|++++|
T Consensus       208 ------------~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~  275 (293)
T d1p22a2         208 ------------GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  275 (293)
T ss_dssp             ------------CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             ------------ceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE
Confidence                        34566677788888888888999999999999999998776544433344467788899999999988


Q ss_pred             eecCCcceEEEEcCCCcEEEEE
Q 019117          298 SCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       298 s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      +  +  .+|++++.||.|++||
T Consensus       276 d--~--~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         276 D--E--FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             C--S--SCEEECCSSSEEEEEC
T ss_pred             c--C--CEEEEEecCCEEEEeC
Confidence            4  4  5799999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-33  Score=233.34  Aligned_cols=289  Identities=11%  Similarity=0.070  Sum_probs=193.0

Q ss_pred             eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee----eEeeeecCCCccceEEEE---EEE-cC-
Q 019117           26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA----ALQSYVDEDKEESFYTVS---WAC-NV-   95 (346)
Q Consensus        26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~----~~~~~~~~~~~~~v~~~~---~~~-~~-   95 (346)
                      ....++|.+.|++|++++      +++++++.|+ |+|||..+.+...    ....+   .+...+..+.   ... +. 
T Consensus         7 ~~~~~~H~~~I~~v~~~~------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   77 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF---VHKSGLHHVDVLQAIERDAF   77 (393)
T ss_dssp             EEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE---CCTTCEEEEEEEEEEETTTE
T ss_pred             eecCCcccCccEEEEEeC------CEEEEEECCCeEEEEECCCCCCCcccceeEeee---eccCCceEeeeEeeeccCCC
Confidence            345589999999999865      6899999998 9999976544211    11111   1222222221   111 11 


Q ss_pred             CCCcEEEEeecCCeEEEEEccCcceeeee----------ccCCCceEEEEEeCCC----CceEEEeeCCCCEEEEecCCC
Q 019117           96 DGIPFLVAGGINGIIRVIDVSNEKLHKSF----------VGHGDSINEIRTQPLK----PSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      ++. ++++++.||.|++|++........+          ..+...+..++|.+..    ..++++++.||++++|++...
T Consensus        78 ~~~-~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~  156 (393)
T d1sq9a_          78 ELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  156 (393)
T ss_dssp             EEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             CCc-EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecC
Confidence            223 7889999999999998654322111          2245567788887732    468899999999999998522


Q ss_pred             e---------------eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117          162 I---------------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  226 (346)
Q Consensus       162 ~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
                      .               ..........+...+++++|+| ++ +|++|+.|++|++||+.+.+....              
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~--------------  220 (393)
T d1sq9a_         157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYN--------------  220 (393)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEE--------------
T ss_pred             CcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccc--------------
Confidence            1               1112222224567789999998 65 789999999999999987432111              


Q ss_pred             ccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCC----CccccccccccCCCcCeeEEEE
Q 019117          227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPG----EGTADILQKYPVPECDIWFIKF  297 (346)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~  297 (346)
                         ......+..|...|.+++|+  +++|++|+.|+   .|++||+.+++....    .........+.+|...|++++|
T Consensus       221 ---~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f  297 (393)
T d1sq9a_         221 ---FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  297 (393)
T ss_dssp             ---EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             ---cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence               11233556799999999998  88999999997   499999998753111    1112233445679999999999


Q ss_pred             eecCCcceEEEEcCCCcEEEEEcCCCCcceeeee-eeeE----EEEEecCCCC
Q 019117          298 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-ICFS----LHVKYNPQSV  345 (346)
Q Consensus       298 s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~----~~~~~spdg~  345 (346)
                      +|++  ++|++|+.|+.|++||+++++++..++- ...+    ..++|+|+|.
T Consensus       298 spd~--~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         298 NDSG--ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             CSSS--SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred             CCCC--CeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCC
Confidence            9999  7999999999999999999976655431 1112    2356666653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=220.77  Aligned_cols=244  Identities=17%  Similarity=0.292  Sum_probs=179.4

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..++..++.+|.++|++++|+|     +.+|++++.|+ |++|+............     ...........+.+++. +
T Consensus        42 ~~~~~~~l~~H~~~V~~l~~s~-----~~~l~s~s~D~~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~  110 (355)
T d1nexb2          42 NKKFLLQLSGHDGGVWALKYAH-----GGILVSGSTDRTVRVWDIKKGCCTHVFEG-----HNSTVRCLDIVEYKNIK-Y  110 (355)
T ss_dssp             TTEEEEEEECCSSCEEEEEEET-----TTEEEEEETTCCEEEEETTTTEEEEEECC-----CSSCEEEEEEEEETTEE-E
T ss_pred             CCcEEEEEECCCCCEEEEEEcC-----CCEEEEEeccccccccccccccccccccc-----ccccccccccccccccc-e
Confidence            4567888999999999999997     35889998888 99999877665443322     11112222222234444 4


Q ss_pred             EEEeecCCeEEEE---------------------------------------------------------------EccC
Q 019117          101 LVAGGINGIIRVI---------------------------------------------------------------DVSN  117 (346)
Q Consensus       101 l~~~~~dg~i~iw---------------------------------------------------------------d~~~  117 (346)
                      +++++.|+.|++|                                                               |+.+
T Consensus       111 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~  190 (355)
T d1nexb2         111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ  190 (355)
T ss_dssp             EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccc
Confidence            4555555555555                                                               4444


Q ss_pred             cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC
Q 019117          118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN  197 (346)
Q Consensus       118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  197 (346)
                      ++.+....++...+.++.|+| .+..+++++.|+.|++||++++..+..+.   +|...|.++++++   ++|++++.||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~~~---~~l~~~~~dg  263 (355)
T d1nexb2         191 MKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLRLSD---KFLVSAAADG  263 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCCCEEEECS---SEEEEECTTS
T ss_pred             ccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccc---ccccccccccccc---ceeeeeeccc
Confidence            455555566777888999999 88999999999999999999999999998   8999999999874   5899999999


Q ss_pred             eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC
Q 019117          198 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG  275 (346)
Q Consensus       198 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~  275 (346)
                      .|++||+++.                         ...+..|...+.++.+.  +..+++++.|++|++||+++++    
T Consensus       264 ~i~iwd~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~----  314 (355)
T d1nexb2         264 SIRGWDANDY-------------------------SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK----  314 (355)
T ss_dssp             EEEEEETTTC-------------------------CEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCC----
T ss_pred             cccccccccc-------------------------ceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCC----
Confidence            9999999872                         22345566666655443  4444555569999999999887    


Q ss_pred             Ccccccc-ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          276 EGTADIL-QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       276 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                           .+ ..+.+|...|.+++|+|+   .++++++.||.++||.+
T Consensus       315 -----~~~~~~~~~~~~V~~v~~~~~---~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         315 -----LVHANILKDADQIWSVNFKGK---TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -----BCCSCTTTTCSEEEEEEEETT---EEEEEEESSSCEEEEEE
T ss_pred             -----EEEEEecCCCCCEEEEEEcCC---eEEEEEECCCcEEEEEE
Confidence                 33 345678889999999976   37888999998766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-31  Score=215.56  Aligned_cols=251  Identities=13%  Similarity=0.145  Sum_probs=182.6

Q ss_pred             eeeeec-ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117           24 RVTNKL-QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV  102 (346)
Q Consensus        24 ~~~~~~-~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  102 (346)
                      +..+.+ .+|...|++++|+|    ++.+++++.++.+++|+......... ..+. ..+...+..++++  ++++ +++
T Consensus        45 ~~~~~~~~~h~~~v~~v~~~~----~g~~~~~~~d~~v~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~s--~~g~-~~~  115 (299)
T d1nr0a2          45 ISNRVFPDVHATMITGIKTTS----KGDLFTVSWDDHLKVVPAGGSGVDSS-KAVA-NKLSSQPLGLAVS--ADGD-IAV  115 (299)
T ss_dssp             CEEECSSCSCSSCEEEEEECT----TSCEEEEETTTEEEEECSSSSSSCTT-SCCE-EECSSCEEEEEEC--TTSS-CEE
T ss_pred             cEEEEEcCCCCCcEEEEEeec----cceeecccceeeEEEeccCCcccccc-cccc-ccccccccccccc--cccc-ccc
Confidence            344445 57999999999999    67888777777799999765432111 1110 1144556666655  8888 665


Q ss_pred             EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117          103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  182 (346)
Q Consensus       103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  182 (346)
                      +++ ++.+.+|+...  .....  ....+.+++|+| ++.+|++|+.|+.|++||+++++.......  .|...|++++|
T Consensus       116 ~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~  187 (299)
T d1nr0a2         116 AAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTI--VHPAEITSVAF  187 (299)
T ss_dssp             EEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEE
T ss_pred             ccc-ccccccccccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccc--ccccccccccc
Confidence            554 67899998543  22222  344678999999 889999999999999999987765443221  48899999999


Q ss_pred             cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC
Q 019117          183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN  260 (346)
Q Consensus       183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~  260 (346)
                      +| ++.++++++.|+.|++||+.+...                    ......+..|...|++++|+  +++|++++.|+
T Consensus       188 ~~-~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg  246 (299)
T d1nr0a2         188 SN-NGAFLVATDQSRKVIPYSVANNFE--------------------LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN  246 (299)
T ss_dssp             CT-TSSEEEEEETTSCEEEEEGGGTTE--------------------ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cc-cccccccccccccccccccccccc--------------------ccccccccccccccccccccccccceEEEcCCC
Confidence            99 889999999999999999987322                    11233456789999999998  78999999999


Q ss_pred             eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      .|++||+++....      ........+...+..+.| +++  .+|++++.|+.|++||+.
T Consensus       247 ~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~-~~~--~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         247 SVIVWNMNKPSDH------PIIIKGAHAMSSVNSVIW-LNE--TTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CEEEEETTCTTSC------CEEETTSSTTSCEEEEEE-EET--TEEEEEETTSCEEEEECC
T ss_pred             EEEEEECCCCCcc------eEEEecCCCCCcEEEEEE-CCC--CEEEEEeCCCEEEEEecc
Confidence            9999999876521      112222234455666655 445  589999999999999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-33  Score=222.14  Aligned_cols=236  Identities=9%  Similarity=0.120  Sum_probs=177.9

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL  101 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  101 (346)
                      .+++++|+||.++|++|+|+|        |++|+.|+ |++||..++.          ..|...|.++++.  +++  .+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~~----------~~h~~~V~~~~~~--~~~--~~   60 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSMH----------QDHSNLIVSLDNS--KAQ--EY   60 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEEE----------CCCCSCEEEEECC--STT--CC
T ss_pred             cceeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCCC----------CCCCCCEEEEEec--CCC--eE
Confidence            467889999999999999975        89999998 9999976532          1366677776654  443  47


Q ss_pred             EEeecCCeEEEEEccCc----------------------------------ceeeeeccCCCceEEEEEeCCCCceEEEe
Q 019117          102 VAGGINGIIRVIDVSNE----------------------------------KLHKSFVGHGDSINEIRTQPLKPSLVVSA  147 (346)
Q Consensus       102 ~~~~~dg~i~iwd~~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  147 (346)
                      ++++.|+++++|++...                                  +.+..+. +...  ..++++ ++..++++
T Consensus        61 ~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~v~  136 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSL-SQNYVAVG  136 (287)
T ss_dssp             EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEE-CSSEEEEE
T ss_pred             EEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeec-cCcceeee
Confidence            78888888888876432                                  1122222 1122  344566 55666666


Q ss_pred             eCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117          148 SKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  226 (346)
Q Consensus       148 ~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
                      +.+ +.+++|++...+....+..  .|...+++++|+| ++.+|++++.||.|++||+.+...                 
T Consensus       137 ~~~~~~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~-----------------  196 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREV-----------------  196 (287)
T ss_dssp             ETTTSCEEEEETTEEEEEEECSS--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-----------------
T ss_pred             ccccceeeeeeccccceeeeeee--ccCCceeEEEecc-Cccccccccccccccceeeccccc-----------------
Confidence            665 5799999987666555542  4778999999999 899999999999999999987321                 


Q ss_pred             ccceeceEEEeecccceEEEEec------------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeE
Q 019117          227 KYVQFPVFIASVHSNYVDCNRWL------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  294 (346)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~~~~~------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  294 (346)
                           ....+..|...|.+++|+            +.++++|+.|++|++||++...        ..+..+.+|...|++
T Consensus       197 -----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--------~~~~~~~~h~~~V~~  263 (287)
T d1pgua2         197 -----KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNN  263 (287)
T ss_dssp             -----EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEE
T ss_pred             -----ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--------eEEEEeCCCCCCeEE
Confidence                 122345688888888885            4589999999999999997643        256677889999999


Q ss_pred             EEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          295 IKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       295 ~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      ++|+|++   .|++++.|+.|++|++
T Consensus       264 v~~~~~~---~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         264 LLWETPS---TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETT---EEEEEETTSCEEEEEE
T ss_pred             EEECCCC---EEEEEECCCeEEEEEE
Confidence            9999986   5888999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-30  Score=214.12  Aligned_cols=254  Identities=22%  Similarity=0.390  Sum_probs=193.2

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC--------------CCccce
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE--------------DKEESF   86 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~--------------~~~~~v   86 (346)
                      ..++.+++.+|.+.|++++|+|      .+|++++.|+ +++|+................              .....+
T Consensus        46 ~~~~~~~~~~h~~~V~~v~~~~------~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  119 (342)
T d2ovrb2          46 TGKCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL  119 (342)
T ss_dssp             TCCEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCEEEEEeCCCCCEEEEEeCC------CccccceecccccccccccccceecccccceeEeeeecccccccccccceeE
Confidence            3567788999999999999987      5899999988 999997654433222110000              000000


Q ss_pred             EE-----------E------EEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC
Q 019117           87 YT-----------V------SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK  149 (346)
Q Consensus        87 ~~-----------~------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  149 (346)
                      ..           +      .....+... .+++++.|+.|++||....+.+..+.+|...+..+.+   ++..+++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~  195 (342)
T d2ovrb2         120 RVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSL  195 (342)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEET
T ss_pred             EEeecccccceeeeecccccceeeccccc-eeeeecCCCeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeC
Confidence            00           0      001113344 6888999999999999999999999999887777665   5679999999


Q ss_pred             CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccc
Q 019117          150 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  229 (346)
Q Consensus       150 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
                      ||.|++||++.++.+..+.   +|...+.++++++   ++|++++.|+.|++||+...+..                   
T Consensus       196 dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~-------------------  250 (342)
T d2ovrb2         196 DTSIRVWDVETGNCIHTLT---GHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCL-------------------  250 (342)
T ss_dssp             TSCEEEEETTTCCEEEEEC---CCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEE-------------------
T ss_pred             CCeEEEeecccceeeeEec---ccccceeEEecCC---CEEEEEcCCCEEEEEeccccccc-------------------
Confidence            9999999999999999888   7999999998874   58999999999999999873321                   


Q ss_pred             eeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc-----cCCCcCeeEEEEeecCCcc
Q 019117          230 QFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-----PVPECDIWFIKFSCDFHYN  304 (346)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~~  304 (346)
                       ..+.....|...+.++.++++++++++.||+|++||+++++         .++.+     .+|...|++++|+|++  .
T Consensus       251 -~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~---------~i~~~~~~~~~~~~~~v~~v~~s~~~--~  318 (342)
T d2ovrb2         251 -QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE---------FIRNLVTLESGGSGGVVWRIRASNTK--L  318 (342)
T ss_dssp             -EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---------EEEEEEECTTGGGTCEEEEEEECSSE--E
T ss_pred             -ccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCC---------EEEEEecccCCCCCCCEEEEEECCCC--C
Confidence             11112234677889999999999999999999999999886         33333     3567789999999998  7


Q ss_pred             eEEEEcCCCc----EEEEEcCC
Q 019117          305 AAAIGNREGK----IFVWELQS  322 (346)
Q Consensus       305 ~l~~~~~dg~----i~iwd~~~  322 (346)
                      +|++|+.||+    |++||+..
T Consensus       319 ~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         319 VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999985    99999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-28  Score=202.75  Aligned_cols=231  Identities=16%  Similarity=0.151  Sum_probs=164.3

Q ss_pred             CccEEEEEcCCc-EEEEEeccCceeeeEeee-----ecCCCccceEEEEEEEcCC---CCcEEEEeecCCeEEEEEccCc
Q 019117           48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSY-----VDEDKEESFYTVSWACNVD---GIPFLVAGGINGIIRVIDVSNE  118 (346)
Q Consensus        48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~  118 (346)
                      ++.++++++.|+ |++|++........+...     ....+...+..+++.+..+   +. ++++++.||.+++|++...
T Consensus        78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~vw~~~~~  156 (393)
T d1sq9a_          78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH-RLVATDVKGTTYIWKFHPF  156 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE-EEEEEETTSCEEEEEEESS
T ss_pred             CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCccccc-EEEEEcCCCcEEEEEeecC
Confidence            446788998888 999998765543333221     1222445677777775432   34 8999999999999998532


Q ss_pred             c------------------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc---cCCCCcce
Q 019117          119 K------------------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG---AGGHRNEV  177 (346)
Q Consensus       119 ~------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v  177 (346)
                      .                  .......+...+.+++|+| ++ +|++|+.|++|++||+++++++..+..   ..+|..+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             CcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence            1                  1112233556789999999 54 899999999999999999988776653   23689999


Q ss_pred             EEEEecCCCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117          178 LSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  252 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  252 (346)
                      ++++|+| ++.+|++|+.|+   .|++||+............          .........+.+|...|++++|+  +++
T Consensus       235 ~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~----------~~~~~~~~~~~gH~~~V~~l~fspd~~~  303 (393)
T d1sq9a_         235 RSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP----------THSSQASLGEFAHSSWVMSLSFNDSGET  303 (393)
T ss_dssp             EEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------------------CCBSBSSCEEEEEECSSSSE
T ss_pred             EEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccc----------cccccceeeeecccCceeeeccCCCCCe
Confidence            9999999 999999999987   4999999874432211100          00112233455799999999998  789


Q ss_pred             EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCee----EEEEeecC
Q 019117          253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW----FIKFSCDF  301 (346)
Q Consensus       253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~~  301 (346)
                      |++++.|++|++||+.+++         ++..+.+|...|.    .++|++++
T Consensus       304 l~S~s~D~~v~vWd~~~g~---------~~~~l~gH~~~v~~~~~~~~~~~~~  347 (393)
T d1sq9a_         304 LCSAGWDGKLRFWDVKTKE---------RITTLNMHCDDIEIEEDILAVDEHG  347 (393)
T ss_dssp             EEEEETTSEEEEEETTTTE---------EEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             eEEECCCCEEEEEECCCCC---------EEEEECCcCCcccCCccEEEECCCC
Confidence            9999999999999999887         6677777765554    35666666

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-27  Score=189.88  Aligned_cols=234  Identities=19%  Similarity=0.303  Sum_probs=157.0

Q ss_pred             CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117           82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG  161 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  161 (346)
                      +...|+|+  +  ++|+ +|++|+.||+|+|||+.+++++.++.+|.+.|.+++|+   +++|++|+.|+.|++|++..+
T Consensus        14 ~~~~V~c~--~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          14 TSKGVYCL--Q--YDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             SCCCEEEE--E--CCSS-EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSC
T ss_pred             CCCCEEEE--E--EcCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccc
Confidence            66677764  3  5687 99999999999999999999999999999999999874   579999999999999999877


Q ss_pred             eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC-------------------
Q 019117          162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS-------------------  222 (346)
Q Consensus       162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------------------  222 (346)
                      ........   +.....  .+.+ ....++++..++.+.+||+..................                   
T Consensus        86 ~~~~~~~~---~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~  159 (293)
T d1p22a2          86 EMLNTLIH---HCEAVL--HLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT  159 (293)
T ss_dssp             CEEEEECC---CCSCEE--EEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred             cccccccc---cccccc--cccc-cccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCc
Confidence            66555441   111111  1111 2334444444555555554432211100000000000                   


Q ss_pred             -CCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117          223 -KFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       223 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                       ..........+..+..+...+..+.+++.++++++.|+.|++||+++.+         .+..+..+...+..  +++++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~--~~~~~  228 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEELVRC--IRFDN  228 (293)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEE--EECCS
T ss_pred             eeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccce---------eeeeecccceeeee--ccccc
Confidence             0000000334667778888999999999999999999999999999876         56667777766654  55666


Q ss_pred             CcceEEEEcCCCcEEEEEcCCCCc-------ceeee---eeeeEEEEEecC
Q 019117          302 HYNAAAIGNREGKIFVWELQSSPP-------VLIAR---LICFSLHVKYNP  342 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~---~~~~~~~~~~sp  342 (346)
                        .+|++++.||.|++||+.+...       .....   +.+.+++++|+|
T Consensus       229 --~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         229 --KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             --SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             --eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence              6899999999999999865331       11222   334577888865

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=2.2e-28  Score=202.13  Aligned_cols=267  Identities=8%  Similarity=0.035  Sum_probs=195.5

Q ss_pred             cCCCceEEEEEEeecCCCccEEEEEcCC-c--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           31 EGKRPLYAVVFNFIDSRYFNVFATVGGN-R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~-~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      +|...|++++|+|    +|++|++++.+ +  |.+||..++..... .     .+...+.+++|+  |+|+ +|++++.+
T Consensus        40 ~~~~~v~~~~~sp----Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~-~-----~~~~~v~~~~~s--pdg~-~l~~~~~~  106 (360)
T d1k32a3          40 PEPLRIRYVRRGG----DTKVAFIHGTREGDFLGIYDYRTGKAEKF-E-----ENLGNVFAMGVD--RNGK-FAVVANDR  106 (360)
T ss_dssp             SCCSCEEEEEECS----SSEEEEEEEETTEEEEEEEETTTCCEEEC-C-----CCCCSEEEEEEC--TTSS-EEEEEETT
T ss_pred             cCCCCEEEEEECC----CCCEEEEEEcCCCCEEEEEECCCCcEEEe-e-----CCCceEEeeeec--cccc-ccceeccc
Confidence            6999999999999    78888876544 3  89999877655432 2     267778777776  9999 99999999


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee----------CCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGHRNEV  177 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  177 (346)
                      +.+++|++.+++....+..|...+.+++|+| ++++|+.+.          .++.+++||+.+++......    +...+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~----~~~~~  181 (360)
T d1k32a3         107 FEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT----ENSHD  181 (360)
T ss_dssp             SEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC----SSSBE
T ss_pred             cccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeecc----ccccc
Confidence            9999999999999999999999999999999 788887543          44568999999887766554    77888


Q ss_pred             EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeec-----eeecC--------------CCC-CCCCcc---------
Q 019117          178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-----FTWTD--------------LPS-KFPTKY---------  228 (346)
Q Consensus       178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~--------------~~~-~~~~~~---------  228 (346)
                      ..++|+| +++.|++++.++.+.+||...........     .....              ... ......         
T Consensus       182 ~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  260 (360)
T d1k32a3         182 YAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN  260 (360)
T ss_dssp             EEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred             ccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecc
Confidence            9999999 89999999999999999976532211100     00000              000 000000         


Q ss_pred             -ceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117          229 -VQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       229 -~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                       .......+..+.+.+..+.+.     +.++++++.++.|++||+.+.+          +   ..+.+.|..++||||| 
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----------~---~~~~~~v~~~~~SpDG-  326 (360)
T d1k32a3         261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----------V---TEVKNNLTDLRLSADR-  326 (360)
T ss_dssp             CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC----------E---EEEEEEEEEEEECTTS-
T ss_pred             cCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe----------E---EEecCCcCEEEECCCC-
Confidence             001122344455555555554     2367778889999999998764          1   1234568999999999 


Q ss_pred             cceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117          303 YNAAAIGNREGKIFVWELQSSPPVLIARL  331 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (346)
                       ++|++++.||.|++||+++++.......
T Consensus       327 -~~l~~~~~Dg~i~v~d~~~~~~~~~~~~  354 (360)
T d1k32a3         327 -KTVMVRKDDGKIYTFPLEKPEDERTVET  354 (360)
T ss_dssp             -CEEEEEETTSCEEEEESSCTTSCEECCC
T ss_pred             -CEEEEEECCCeEEEEECCCCCcceEEEe
Confidence             7899999999999999999886655443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.1e-27  Score=197.78  Aligned_cols=264  Identities=10%  Similarity=0.002  Sum_probs=191.0

Q ss_pred             EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC--eEEEEE
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING--IIRVID  114 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd  114 (346)
                      +.-.|||   .+|+++|+++.+.|.+||...+...+.       .|...|.+++|+  |||+ +|++++.+.  .|++||
T Consensus         6 ~~~~fSP---~dG~~~a~~~~g~v~v~d~~~~~~~~~-------~~~~~v~~~~~s--pDg~-~l~~~~~~~g~~v~v~d   72 (360)
T d1k32a3           6 FAEDFSP---LDGDLIAFVSRGQAFIQDVSGTYVLKV-------PEPLRIRYVRRG--GDTK-VAFIHGTREGDFLGIYD   72 (360)
T ss_dssp             GEEEEEE---CGGGCEEEEETTEEEEECTTSSBEEEC-------SCCSCEEEEEEC--SSSE-EEEEEEETTEEEEEEEE
T ss_pred             hcccccC---CCCCEEEEEECCeEEEEECCCCcEEEc-------cCCCCEEEEEEC--CCCC-EEEEEEcCCCCEEEEEE
Confidence            3457998   368999999988899999877655432       267788888776  9999 777666543  799999


Q ss_pred             ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117          115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                      +.+++.. .+..|...|.+++|+| ++++|++++.++.+++|++.+++....+.   .|...+.+++|+| ++++|+.+.
T Consensus        73 ~~~~~~~-~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp-dg~~la~~~  146 (360)
T d1k32a3          73 YRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISD-NSRFIAYGF  146 (360)
T ss_dssp             TTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECT-TSCEEEEEE
T ss_pred             CCCCcEE-EeeCCCceEEeeeecc-cccccceeccccccccccccccceeeeee---cccccccchhhcc-ceeeeeeec
Confidence            9887654 5667999999999999 89999999999999999999999888887   6888999999999 888887543


Q ss_pred             ----------cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeE
Q 019117          195 ----------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI  262 (346)
Q Consensus       195 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i  262 (346)
                                .++.+++||+...+                        ......+...+..+.|+  |++|++++.++.+
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~~------------------------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~  202 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGRK------------------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLD  202 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTE------------------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred             cccccceeeccccceeeeccccCc------------------------eeeecccccccccccccCCCCEEEEEeCCCce
Confidence                      34578999998722                        23344566677778887  8899999999999


Q ss_pred             EEEcCCCCCCCCCC----------------------------------ccccccccccCCCcCeeEEEEeec--------
Q 019117          263 VLWEPKMKEQSPGE----------------------------------GTADILQKYPVPECDIWFIKFSCD--------  300 (346)
Q Consensus       263 ~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~s~~--------  300 (346)
                      ++|+..........                                  .....+..+....+....+...++        
T Consensus       203 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T d1k32a3         203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP  282 (360)
T ss_dssp             CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred             EcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEE
Confidence            99987543210000                                  000001111112222333333332        


Q ss_pred             --CC-cceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          301 --FH-YNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       301 --~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                        +. ..++++++.++.|++||+.+++.   ..+.+++.+++|||||++
T Consensus       283 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~v~~~~~SpDG~~  328 (360)
T d1k32a3         283 VHGEFAAYYQGAPEKGVLLKYDVKTRKV---TEVKNNLTDLRLSADRKT  328 (360)
T ss_dssp             CCCSHHHHHHCCCCCEEEEEEETTTCCE---EEEEEEEEEEEECTTSCE
T ss_pred             ecCCCeeEEEecCCCCEEEEEECCCCeE---EEecCCcCEEEECCCCCE
Confidence              21 12566777899999999998753   345567899999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8e-26  Score=184.60  Aligned_cols=264  Identities=12%  Similarity=0.042  Sum_probs=182.3

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ..+|.++|.+++|+|.   .+.+|++|+.|+ |++|+.............    +........+.  ++.. .+++++.+
T Consensus        52 ~~~h~~~V~~v~f~~~---~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~-~~~~~~~~  121 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILKVDLIGSPSFQALTNN----EANLGICRICK--YGDD-KLIAASWD  121 (342)
T ss_dssp             EEECSSCEEEEEEEES---SSEEEEEEETTSCEEEECSSSSSSEEECBSC----CCCSCEEEEEE--ETTT-EEEEEETT
T ss_pred             ecCCCCCEEEEEEeCC---CCCEEEEcccccceeeeeccccccccccccc----ccccccccccc--cccc-cccccccc
Confidence            3479999999999982   357899999988 999998877765554432    22222223333  4555 89999999


Q ss_pred             CeEEEEEccCcceeeee----ccC--CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          108 GIIRVIDVSNEKLHKSF----VGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~----~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      +.+++||++++......    ..+  ......+.+.+ ....+++++.|+.|++||++..+..........+...+.+..
T Consensus       122 ~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (342)
T d1yfqa_         122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA  200 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred             cccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeE
Confidence            99999998765433222    222  23345566677 778999999999999999987655443332224556677777


Q ss_pred             ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117          182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD  259 (346)
Q Consensus       182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  259 (346)
                      +.+.++..+++++.||.+.+|++...............        ...........|...|.+++|+  +++|++|+.|
T Consensus       201 ~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~D  272 (342)
T d1yfqa_         201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--------RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--------ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             eecCCCCEEEeecCCCeEEEEEecCCcceeecccccee--------eeeeeccCCCcccccceeEEecCCccEEEEECCC
Confidence            77657889999999999999998763221110000000        0000111223566778999998  7899999999


Q ss_pred             CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      |.|++||+++.+         .+..+..+ ..+..++|+|++  .+|++++.|+.+++|.....
T Consensus       273 g~v~vWD~~~~~---------~l~~~~~~-~~~~~~~~s~~~--~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         273 GIISCWNLQTRK---------KIKNFAKF-NEDSVVKIACSD--NILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             SCEEEEETTTTE---------EEEECCCC-SSSEEEEEEECS--SEEEEEEECTHHHHCSSSCT
T ss_pred             CEEEEEECCCCc---------EEEEecCC-CCCEEEEEEeCC--CEEEEEEcCCcEEEeeeeCC
Confidence            999999999876         55555433 255678899998  68888888988888876443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=8.1e-26  Score=190.98  Aligned_cols=296  Identities=7%  Similarity=-0.039  Sum_probs=184.2

Q ss_pred             ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      ..+.+.++..|. .+..++|||    ||++|++++.|+ |++||+.+++............+...+  .+..++|||+.+
T Consensus        51 t~~~~~~l~~g~-~~~~vafSP----DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~--~s~~~spDG~~l  123 (426)
T d1hzua2          51 SKKIVKVIDTGY-AVHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE--SSKFKGYEDRYT  123 (426)
T ss_dssp             TCSEEEEEECCS-SEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE--ECCSTTCTTTEE
T ss_pred             CCcEEEEEeCCC-CeeEEEECC----CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE--EeeeecCCCCEE
Confidence            456677777764 589999999    899999999887 999999988765443321111122222  233456999933


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC-----------EEEEecCCCeeEEEecc
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES-----------VRLWNVQTGICILIFAG  169 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-----------i~iwd~~~~~~~~~~~~  169 (346)
                      ++++..++.+.+||..+++....+..|...+....+.+......++.+.|+.           +.+++......+.....
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE
T ss_pred             EEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe
Confidence            4566689999999999999888777666555545554422223334444444           44444333322111110


Q ss_pred             cCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeeeeceeecC-----------------------------
Q 019117          170 AGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTD-----------------------------  219 (346)
Q Consensus       170 ~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~-----------------------------  219 (346)
                        .+...+..+.|+| ++++++++ ..+..+.+++....+...........                             
T Consensus       204 --~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~  280 (426)
T d1hzua2         204 --GAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISL  280 (426)
T ss_dssp             --ECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEE
T ss_pred             --ccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEE
Confidence              3667788999999 65555554 55667889998874432211110000                             


Q ss_pred             --CCCCCCCccceeceEEEeecccceEEEEec--CCEEEE-------EeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117          220 --LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-------KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  288 (346)
Q Consensus       220 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  288 (346)
                        ................+..|...+..++|+  +.+|++       ++.|++|+|||+.+++.............+..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~  360 (426)
T d1hzua2         281 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  360 (426)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             eeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC
Confidence              000000111123456788899999999998  778884       566899999999988742211111111223445


Q ss_pred             CcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCCCCccee
Q 019117          289 ECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSPPVLI  328 (346)
Q Consensus       289 ~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~  328 (346)
                      ...+.+++|||||+ .+++++    +.+|.|+|||.++.+....
T Consensus       361 ~~rv~~~~fSpDGk-~i~vs~~~~~~~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         361 AKRVVQPEYNKRGD-EVWFSVWNGKNDSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             CCCEEEEEECSSSS-EEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred             CccEEEEEECCCCC-EEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence            66799999999995 244443    4688999999999875443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=6.7e-25  Score=185.31  Aligned_cols=258  Identities=10%  Similarity=0.033  Sum_probs=164.8

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceee--ee--
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SF--  124 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~--  124 (346)
                      .++++.++++ |+|||..+++.+..+..      ...+..++|+  |||+ +|++++.|+.|++||+.+++...  .+  
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~------g~~~~~vafS--PDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDT------GYAVHISRMS--ASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEEC------CSSEEEEEEC--TTSC-EEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeC------CCCeeEEEEC--CCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence            4567787777 99999999999888874      2346666555  9999 99999999999999999887433  22  


Q ss_pred             -ccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcce-----------EEEEecCCCCcEEE
Q 019117          125 -VGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEV-----------LSVDFHPSDIYRIA  191 (346)
Q Consensus       125 -~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~  191 (346)
                       .+|...+.+++|+| +++++ +++..++.+.+||..+++.+..+.   .+...+           ..+.+++++..+++
T Consensus       104 ~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         104 GIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVS---TRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             CSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEE---CCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             CCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEee---ccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence             35666777888889 66665 566689999999999998887776   344433           34444442222222


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-------------
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-------------  256 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-------------  256 (346)
                      +....+.+.+++......                      .......+...+..+.++  +++++++             
T Consensus       180 ~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         180 NVKETGKVLLVNYKDIDN----------------------LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             EETTTTEEEEEECSSSSS----------------------CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             ecCCCCeEEEEEeccccc----------------------eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence            233334444444433211                      011122233334444443  3332222             


Q ss_pred             -----------------------------------eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117          257 -----------------------------------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       257 -----------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                                                         +.|+.+.+|+........  ...+....+.+|...+..++|+||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~--~~~~~~~~l~g~~~~v~~v~~sPdg  315 (426)
T d1hzua2         238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--YAWKKVAELQGQGGGSLFIKTHPKS  315 (426)
T ss_dssp             TTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT--TBTSEEEEEECSSSCCCCEECCTTC
T ss_pred             cccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc--ccceEeEEEecCCCceeEEEcCCCC
Confidence                                               234444444443322111  1123455677888899999999999


Q ss_pred             CcceEEE-------EcCCCcEEEEEcCCCCcceeee----------eeeeEEEEEecCCCCC
Q 019117          302 HYNAAAI-------GNREGKIFVWELQSSPPVLIAR----------LICFSLHVKYNPQSVY  346 (346)
Q Consensus       302 ~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~spdg~~  346 (346)
                        ++|++       ++.|++|+|||+++++......          ....+.+++|||||++
T Consensus       316 --~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         316 --SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             --SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred             --ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence              67774       5568899999999988654431          2334788999999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=8.2e-23  Score=164.08  Aligned_cols=256  Identities=15%  Similarity=0.070  Sum_probs=184.8

Q ss_pred             eeeeeecccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117           23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF  100 (346)
Q Consensus        23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  100 (346)
                      .+.++++... ..+..++|+|    +|++| ++++.++ |.+||+.+++.+..+...      ..+..+.+.  +++...
T Consensus        22 ~~~~~~i~~g-~~p~~va~sp----dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~------~~~~~~~~~--~~~~~~   88 (301)
T d1l0qa2          22 NKVTATIPVG-SNPMGAVISP----DGTKVYVANAHSNDVSIIDTATNNVIATVPAG------SSPQGVAVS--PDGKQV   88 (301)
T ss_dssp             TEEEEEEECS-SSEEEEEECT----TSSEEEEEEGGGTEEEEEETTTTEEEEEEECS------SSEEEEEEC--TTSSEE
T ss_pred             CeEEEEEECC-CCceEEEEeC----CCCEEEEEECCCCEEEEEECCCCceeeeeecc------ccccccccc--cccccc
Confidence            4556666433 4578999999    77766 4555555 999999998887776632      234445554  888856


Q ss_pred             EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117          101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  180 (346)
Q Consensus       101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  180 (346)
                      ++++..++.+.+|+..+++....+..+ ....++.|+|++...++++..++.+.+|+..+.+.+..+.    +...+..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  163 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS----VGRSPKGI  163 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CCSSEEEE
T ss_pred             cccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc----cCCCceEE
Confidence            667778889999999999888888754 5678999999444455677778899999999999998887    55678899


Q ss_pred             EecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117          181 DFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  257 (346)
Q Consensus       181 ~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  257 (346)
                      +++| ++..+++++. ++.+.+|+.....                        .............+.++  ++.++.++
T Consensus       164 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~g~~~~v~~  218 (301)
T d1l0qa2         164 AVTP-DGTKVYVANFDSMSISVIDTVTNS------------------------VIDTVKVEAAPSGIAVNPEGTKAYVTN  218 (301)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTE------------------------EEEEEECSSEEEEEEECTTSSEEEEEE
T ss_pred             Eeec-cccceeeeccccccccccccccee------------------------eeecccccCCcceeecccccccccccc
Confidence            9999 6666666555 4667777776621                        11222233445667776  66666554


Q ss_pred             e---cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117          258 V---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI  332 (346)
Q Consensus       258 ~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (346)
                      .   +++|++||+.+++         .+..+..+ ..+.+++|+||++ .++++++.|+.|++||+++++.+..+...
T Consensus       219 ~~~~~~~v~v~D~~t~~---------~~~~~~~~-~~~~~va~spdg~-~l~va~~~~~~i~v~D~~t~~~~~~~~vg  285 (301)
T d1l0qa2         219 VDKYFNTVSMIDTGTNK---------ITARIPVG-PDPAGIAVTPDGK-KVYVALSFCNTVSVIDTATNTITATMAVG  285 (301)
T ss_dssp             ECSSCCEEEEEETTTTE---------EEEEEECC-SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ccceeeeeeeeecCCCe---------EEEEEcCC-CCEEEEEEeCCCC-EEEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence            3   4689999999876         44444443 4678999999994 34578889999999999999876666543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=7.2e-23  Score=164.40  Aligned_cols=245  Identities=10%  Similarity=0.047  Sum_probs=179.8

Q ss_pred             EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      +++.+.++ |.+||+.+++.++.+..      ...+..+++  +|+|+ +| ++++.++.|++||+.+++.+..+..+..
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~------g~~p~~va~--spdG~-~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV------GSNPMGAVI--SPDGT-KVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEE--CTTSS-EEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC------CCCceEEEE--eCCCC-EEEEEECCCCEEEEEECCCCceeeeeecccc
Confidence            44555655 99999999988777762      334555555  59999 55 6777899999999999999999887654


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  209 (346)
                       +..+.|++++...++++..++.+.+|+..+++....+.    +...+.++.|+|++..+++++..++.+.+|+..... 
T Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-  149 (301)
T d1l0qa2          76 -PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-  149 (301)
T ss_dssp             -EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-
T ss_pred             -ccccccccccccccccccccceeeecccccceeeeecc----ccccceEEEeecCCCeeeeeeccccceeeeeccccc-
Confidence             68999999444566677788899999999999988887    566788999999444455667778899999998832 


Q ss_pred             eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCCCCCCCcccccccccc
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYP  286 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~  286 (346)
                                            ....+. +...+..+.++  +..+++++. ++.+.+|+....+         ......
T Consensus       150 ----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  197 (301)
T d1l0qa2         150 ----------------------VINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VIDTVK  197 (301)
T ss_dssp             ----------------------EEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEE
T ss_pred             ----------------------eeeecc-cCCCceEEEeeccccceeeeccccccccccccccee---------eeeccc
Confidence                                  233333 33456777777  566666655 4677788776654         333333


Q ss_pred             CCCcCeeEEEEeecCCcceEEEE---cCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      . ...+..++|++++.  .++.+   ..++.|++||+.+++.+..+.....+..++|+|||++
T Consensus       198 ~-~~~~~~~~~~~~g~--~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~  257 (301)
T d1l0qa2         198 V-EAAPSGIAVNPEGT--KAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK  257 (301)
T ss_dssp             C-SSEEEEEEECTTSS--EEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred             c-cCCcceeecccccc--ccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCE
Confidence            2 34567889999995  34333   3457899999999987777777777899999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-23  Score=167.95  Aligned_cols=147  Identities=15%  Similarity=0.225  Sum_probs=120.6

Q ss_pred             cCCCCcEEEEeecC-CeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE-eccc
Q 019117           94 NVDGIPFLVAGGIN-GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGA  170 (346)
Q Consensus        94 ~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~  170 (346)
                      ++++. .+++++.+ +.+++|++...+....+. .|...+++++|+| ++.+|++|+.||.|++||+.+++.... +.  
T Consensus       127 ~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--  202 (287)
T d1pgua2         127 SLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWA--  202 (287)
T ss_dssp             EECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSC--
T ss_pred             eccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeeccccccccccc--
Confidence            36666 66666665 579999987766555543 4778999999999 889999999999999999998887654 33  


Q ss_pred             CCCCcceEEEEecCC---------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117          171 GGHRNEVLSVDFHPS---------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  241 (346)
Q Consensus       171 ~~~~~~v~~~~~~~~---------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
                       +|...|.+++|+|.         ++.++++|+.|++|++||++...                      ..+..+.+|..
T Consensus       203 -~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~----------------------~~~~~~~~h~~  259 (287)
T d1pgua2         203 -FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----------------------KIIKALNAHKD  259 (287)
T ss_dssp             -CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----------------------CCEEETTSSTT
T ss_pred             -ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC----------------------eEEEEeCCCCC
Confidence             79999999999872         35689999999999999997621                      23455678999


Q ss_pred             ceEEEEec-CCEEEEEeecCeEEEEcC
Q 019117          242 YVDCNRWL-GDFILSKSVDNEIVLWEP  267 (346)
Q Consensus       242 ~i~~~~~~-~~~l~~~~~d~~i~iwd~  267 (346)
                      .|+++.|+ +..|++++.|++|++|++
T Consensus       260 ~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 GVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            99999998 668999999999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.7e-23  Score=169.57  Aligned_cols=266  Identities=9%  Similarity=0.009  Sum_probs=182.5

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEccCcceeeeeccC
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGH  127 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~  127 (346)
                      ++|++++.++ |.+||+.+++.+..+...   .+...+..++++  |||+ ++ ++++.++.|.+||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~---~~~~~~~~i~~s--pDg~-~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA---DAGPTPMVPMVA--PGGR-IAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT---TCTTCCCCEEEC--TTSS-EEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC---CCCCCccEEEEC--CCCC-EEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            5788888876 999999999888777542   233344556555  9999 65 67778999999999999988887655


Q ss_pred             C-----CceEEEEEeCCCCceEEEee------------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          128 G-----DSINEIRTQPLKPSLVVSAS------------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       128 ~-----~~v~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      .     ..+..++|+| ++..++++.            .+..+.+||..+++....+.    +...+.+++|+| ++.++
T Consensus        76 ~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l  149 (337)
T d1pbyb_          76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWAR-DGSKL  149 (337)
T ss_dssp             BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECT-TSSCE
T ss_pred             CCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc----ccCCceEEEEcC-CCCEE
Confidence            3     3456899999 777777665            35788999999999988887    566788999999 88888


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCC-------------------------------CCcc-----------
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF-------------------------------PTKY-----------  228 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~-----------  228 (346)
                      ++++.  .+.+||....+................                               ....           
T Consensus       150 ~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (337)
T d1pbyb_         150 YGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             EEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             EEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence            88764  477899877443222111100000000                               0000           


Q ss_pred             -ceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcce
Q 019117          229 -VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  305 (346)
Q Consensus       229 -~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  305 (346)
                       ..........+...+..+.++  +.+++.  .++.|++||+.+++         .+..+. +...+.+++|+|||  ++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~s~dG--~~  293 (337)
T d1pbyb_         228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNA---------SIKRVP-LPHSYYSVNVSTDG--ST  293 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTSSEEEE--EESEEEEEETTTTE---------EEEEEE-CSSCCCEEEECTTS--CE
T ss_pred             CCcEEEEEecCCCcceEEEEecccceEEEE--ccccEEEEECCCCc---------EEEEEc-CCCCEEEEEECCCC--CE
Confidence             000111223344455556666  344443  46899999999876         444443 34578899999999  78


Q ss_pred             EEEEcCCCcEEEEEcCCCCcceeeeeeee-----EEEEEecCC
Q 019117          306 AAIGNREGKIFVWELQSSPPVLIARLICF-----SLHVKYNPQ  343 (346)
Q Consensus       306 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~spd  343 (346)
                      |++++.|+.|++||+++++.+..+.+.+.     ..-..|++|
T Consensus       294 l~v~~~~~~i~v~D~~t~~~v~~i~~~g~~~~~~~~~~~~~~~  336 (337)
T d1pbyb_         294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD  336 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEECGGGCCCBTCCCEEEECC
T ss_pred             EEEEeCCCcEEEEECCCCcEEEEEECCCCCccceeeeeEEcCC
Confidence            99999999999999999998877776543     122456665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.1e-24  Score=179.60  Aligned_cols=294  Identities=8%  Similarity=-0.050  Sum_probs=183.5

Q ss_pred             cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee--eEeeeecCCCccceEEEEEEEcCCC
Q 019117           21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVDG   97 (346)
Q Consensus        21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~   97 (346)
                      ...+++..+..| ..+..++|||    ||+++++++.|+ +.+||+.+++...  .+...  ..+...+.  +..++|||
T Consensus        50 ~t~~v~~~~~~g-~~~~~v~fSp----DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~--~~~~~~~~--s~~~SpDG  120 (432)
T d1qksa2          50 STYEIKTVLDTG-YAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIET--SKMEGWED  120 (432)
T ss_dssp             TTCCEEEEEECS-SCEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEE--CCSTTCTT
T ss_pred             CCCcEEEEEeCC-CCeeEEEECC----CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC--CCCCCeEE--ecccCCCC
Confidence            456677777766 4699999999    899999998877 9999998776433  33321  11222222  22356899


Q ss_pred             CcEEEEeecCCeEEEEEccCcceeeeeccC-----------CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117           98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGH-----------GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus        98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                      +.++++++.++.|++||..+++.+..+..|           ......+.++|++..++++...++.|.+||..+.+....
T Consensus       121 ~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE
Confidence            944578888999999999999988776543           345667889994445567778889999999988765443


Q ss_pred             ecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCC-------------cccee-
Q 019117          167 FAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT-------------KYVQF-  231 (346)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-  231 (346)
                      ...  .+...+..++|+| +++++++++ .++.+.++|....+..................             ..... 
T Consensus       201 ~~i--~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~  277 (432)
T d1qksa2         201 TEI--SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  277 (432)
T ss_dssp             EEE--ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             EEE--cccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCc
Confidence            321  2567789999999 777665555 45689999988743322111100000000000             00000 


Q ss_pred             ceEEE-------eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117          232 PVFIA-------SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  302 (346)
Q Consensus       232 ~~~~~-------~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  302 (346)
                      .+...       ..|...+....+.  +..+++++.+++.++|+..+..               .+.....++++ ||+ 
T Consensus       278 ~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~---------------~~~~~~~sv~v-pDg-  340 (432)
T d1qksa2         278 SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN---------------PEAEISGSVAV-FDI-  340 (432)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC---------------SSHHHHTCEEE-EEG-
T ss_pred             eEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC---------------CCCCeeeEEEE-Eec-
Confidence            00000       0112233344443  4556666666666666554322               11112233454 888 


Q ss_pred             cceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          303 YNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                       +.|++++.|+.+++|++.++..+  .+....+.+++|||||++
T Consensus       341 -~~la~~s~d~~~k~w~~~~~~~l--~~~~~~v~~~~fS~DG~~  381 (432)
T d1qksa2         341 -KAMTGDGSDPEFKTLPIAEWAGI--TEGQPRVVQGEFNKDGTE  381 (432)
T ss_dssp             -GGCCCSSSCCCEEEECHHHHHTC--CSSCCEEEEEEECTTSSE
T ss_pred             -hhhcccccCCceEeccccccccc--CCCCCcEEEeEECCCCCE
Confidence             78999999999999998765322  244556889999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=3.7e-21  Score=157.31  Aligned_cols=266  Identities=12%  Similarity=-0.006  Sum_probs=174.1

Q ss_pred             EEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC
Q 019117           39 VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN  117 (346)
Q Consensus        39 ~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  117 (346)
                      ++|++    ++++|++++.++ |.+||+.+++.+..+...    +...+..++|+  |||+.+++++..++.|.+||+.+
T Consensus         2 ~a~~~----~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~----~~~~p~~l~~s--pDG~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_           2 PALKA----GHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----DKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             CCCCT----TCEEEEEEETTTEEEEEETTTTEEEEEEECS----SCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccCCC----CCcEEEEEcCCCEEEEEECCCCCEEEEEEcC----CCCCcceEEEC--CCCCEEEEEECCCCcEEEEeCcc
Confidence            35666    789999999887 999999999887776531    33344556665  99993446677899999999999


Q ss_pred             cceeeeeccCC------CceEEEEEeCCCCceEEEee------------CCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117          118 EKLHKSFVGHG------DSINEIRTQPLKPSLVVSAS------------KDESVRLWNVQTGICILIFAGAGGHRNEVLS  179 (346)
Q Consensus       118 ~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  179 (346)
                      ++.+..+....      ..+..++|+| +++++++++            .++.+.+|+..+++....+... .....+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~  149 (346)
T d1jmxb_          72 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYL  149 (346)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCC
T ss_pred             CeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEE
Confidence            98887665322      2456899999 777776654            4677889998877655444311 12345556


Q ss_pred             EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCC-----C--CCC-C--------------------------
Q 019117          180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL-----P--SKF-P--------------------------  225 (346)
Q Consensus       180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~--~~~-~--------------------------  225 (346)
                      +.+++ ++.+++++   +.+.+|++.+.+............     +  ... .                          
T Consensus       150 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (346)
T d1jmxb_         150 MRAAD-DGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  225 (346)
T ss_dssp             EEECT-TSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             EEecC-CCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEee
Confidence            66765 66655543   458888887644322211100000     0  000 0                          


Q ss_pred             -----------CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCe
Q 019117          226 -----------TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI  292 (346)
Q Consensus       226 -----------~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  292 (346)
                                 .............|...+..+.++  +.+++... ++.|.+||+.+++         .+..+.. ...+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~---------~~~~~~~-~~~~  294 (346)
T d1jmxb_         226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRK---------LIKAANL-DHTY  294 (346)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTE---------EEEEEEC-SSCC
T ss_pred             ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCc---------EEEEEcC-CCCE
Confidence                       000000112233455566666665  44555444 5689999998876         4444442 3468


Q ss_pred             eEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117          293 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC  333 (346)
Q Consensus       293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (346)
                      .+++|+||+  ++|++++.|+.|++||+++++.+....+++
T Consensus       295 ~~va~s~DG--~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         295 YCVAFDKKG--DKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             CEEEECSSS--SCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCC--CEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            999999999  789999999999999999998887777654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=2.2e-18  Score=142.43  Aligned_cols=287  Identities=8%  Similarity=-0.127  Sum_probs=176.0

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcC------CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGG------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      ..+..++.+++++|    +++.++....      ..|.+||..+++.+..+...     .  ...++|  +|||+ +|++
T Consensus        17 ~~~~~p~~~~a~sp----dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-----~--~~~~a~--SpDG~-~l~v   82 (373)
T d2madh_          17 GAADGPTNDEAPGA----DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-----F--LPNPVA--AHSGS-EFAL   82 (373)
T ss_pred             ccCCCCccccccCC----CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-----C--CccEEE--cCCCC-EEEE
Confidence            46888999999999    7777766422      23999999999888776532     1  112444  59999 7777


Q ss_pred             ee----------cCCeEEEEEccCcceeeeeccCC---------------------------------------------
Q 019117          104 GG----------INGIIRVIDVSNEKLHKSFVGHG---------------------------------------------  128 (346)
Q Consensus       104 ~~----------~dg~i~iwd~~~~~~~~~~~~~~---------------------------------------------  128 (346)
                      ++          .++.|.+||..+++.+..+..+.                                             
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ  162 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE
Confidence            64          45789999998877654332211                                             


Q ss_pred             --CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC---CCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117          129 --DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  203 (346)
Q Consensus       129 --~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  203 (346)
                        ....++.++|++...+++.+.|+.+.+|+...++.........   +.......+.+.+ ++ .++..+.++.+.+|+
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~~  240 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSGKILQAD  240 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc-eEEEecCCceEEEEE
Confidence              1233556667444566778888999999988777666544210   1122234455554 44 455667788999999


Q ss_pred             ccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE-EEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117          204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  281 (346)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  281 (346)
                      ....................... ...........+.+.-.. .... +..+++...++.+.+||..+++         .
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~---------~  310 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADT-WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------T  310 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeee-eccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc---------E
Confidence            88743222111111000000000 000000111111111111 1111 5567777888999999999887         3


Q ss_pred             cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCC
Q 019117          282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQ  343 (346)
Q Consensus       282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spd  343 (346)
                      +..+. +...+..++|+|||+..++++++.|+.|++||+.+++.+.... +...+..++..++
T Consensus       311 ~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         311 SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            44443 3457889999999953356789999999999999999877765 3445677776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.9e-18  Score=145.26  Aligned_cols=190  Identities=9%  Similarity=0.017  Sum_probs=139.1

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--eeee--
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF--  124 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~--  124 (346)
                      -++++.++++ |.|||..+++.+..+..      ...+..++|+  |||+ ++++++.|+.|++||+.+++.  +..+  
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~------g~~~~~v~fS--pDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDT------GYAVHISRLS--ASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC------SSCEEEEEEC--TTSC-EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeC------CCCeeEEEEC--CCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            3458888887 99999999999988873      2356666555  9999 999999999999999988763  2333  


Q ss_pred             -ccCCCceEEEEEeCCCCce-EEEeeCCCCEEEEecCCCeeEEEecccC--------CCCcceEEEEecCCCCcEEEEEe
Q 019117          125 -VGHGDSINEIRTQPLKPSL-VVSASKDESVRLWNVQTGICILIFAGAG--------GHRNEVLSVDFHPSDIYRIASCG  194 (346)
Q Consensus       125 -~~~~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~  194 (346)
                       ..|.+.+.+..|+| ++++ +++++.+++|++||..+++.+..+....        .+......+.++|++..++++..
T Consensus       104 ~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         104 GSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             CSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence             34666677778888 6665 5788899999999999999887765211        23455677889984445567777


Q ss_pred             cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCC
Q 019117          195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKE  271 (346)
Q Consensus       195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~  271 (346)
                      .++.|.+||....+.                     ..+.. ..+...+..+.|+  |+++++++. ++.+.++|..+.+
T Consensus       183 ~~~~i~~~d~~~~~~---------------------~~~~~-i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         183 ETGKILLVDYTDLNN---------------------LKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             TTTEEEEEETTCSSE---------------------EEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             cCCeEEEEEccCCCc---------------------ceEEE-EcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            889999999877321                     01111 2345567788888  777666655 6689999998765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.3e-17  Score=135.41  Aligned_cols=270  Identities=13%  Similarity=0.111  Sum_probs=168.6

Q ss_pred             cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEccCcceeeee---
Q 019117           50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSF---  124 (346)
Q Consensus        50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~---  124 (346)
                      ..+++++.++ |++|++.....+..++.+.   +.+.+..++|+  |||+ +| +++..|+.|++|++........+   
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~---~~~~v~~la~s--pDG~-~L~v~~~~d~~i~~~~i~~~~~~~~~~~~   78 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVD---VPGQVQPMVVS--PDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAE   78 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSCCCCEEEC--TTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEc---CCCCEeEEEEe--CCCC-EEEEEECCCCeEEEEEEeCCCCcEEEeee
Confidence            3556666666 9999998766655555432   45667667766  9999 66 45556899999999766533322   


Q ss_pred             ccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEE
Q 019117          125 VGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIW  202 (346)
Q Consensus       125 ~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iw  202 (346)
                      ..+...+..++|+| ++++|++++ .++.|.+|+............. .+...+.++.++| ++++++.++ .+..|.+|
T Consensus        79 ~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          79 SALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             EECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEE
T ss_pred             cccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceeccccc-CCCccceEEEeee-cceeeeccccccceeeEE
Confidence            22445677899999 788777776 4778999988766554443321 4667788999999 766666655 45679999


Q ss_pred             EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCc-c
Q 019117          203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEG-T  278 (346)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~-~  278 (346)
                      +...........                 ..............+.|+  +.+++. ....+...+|+........... .
T Consensus       156 ~~~~~~~~~~~~-----------------~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  218 (333)
T d1ri6a_         156 TVSDDGHLVAQD-----------------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT  218 (333)
T ss_dssp             EECTTSCEEEEE-----------------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred             EeccCCcceeee-----------------ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeee
Confidence            987632211100                 011111233445677777  455544 4456778888875443211000 0


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eee---eeeEEEEEecCCCCC
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARL---ICFSLHVKYNPQSVY  346 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~~~~~~~~spdg~~  346 (346)
                      ................++++++++ .+++++..++.+.+|++........ ...   ...+..++|||||+|
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~  289 (333)
T d1ri6a_         219 LDMMPENFSDTRWAADIHITPDGR-HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY  289 (333)
T ss_dssp             EECSCTTCCSCCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred             eeeeecCCCccccceeEEEecccC-ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCE
Confidence            000001111234567789999996 4666777888999999877543332 221   234668999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=3.3e-18  Score=138.97  Aligned_cols=211  Identities=10%  Similarity=0.066  Sum_probs=148.8

Q ss_pred             eeeeeecc--cCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117           23 YRVTNKLQ--EGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI   98 (346)
Q Consensus        23 ~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (346)
                      .++...+.  .+...+.+++|+|    +|+++ ++++.++ |.+||+.+++.+..+.......+...+..+++  +|+++
T Consensus        21 ~~~~~~i~~~~~~~~~~~i~~sp----Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~--s~dg~   94 (337)
T d1pbyb_          21 MAVDKVITIADAGPTPMVPMVAP----GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL--SPDGK   94 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECT----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE--CTTSS
T ss_pred             CeEEEEEECCCCCCCccEEEECC----CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEE--cCCCc
Confidence            45555554  3455678999999    77776 5666666 99999999998877765433222233334555  49998


Q ss_pred             cEEEEee------------cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117           99 PFLVAGG------------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI  166 (346)
Q Consensus        99 ~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  166 (346)
                       +++++.            .+..+.+||..+++....+.. ...+..++|+| ++.++++++.  .+.+||..+++....
T Consensus        95 -~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~  169 (337)
T d1pbyb_          95 -TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVED  169 (337)
T ss_dssp             -EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEE
T ss_pred             -EEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEE
Confidence             777665            357899999999998888874 45688999999 8888888764  477899887766554


Q ss_pred             ecccC---------------------------------------------------------------CCCcceEEEEec
Q 019117          167 FAGAG---------------------------------------------------------------GHRNEVLSVDFH  183 (346)
Q Consensus       167 ~~~~~---------------------------------------------------------------~~~~~v~~~~~~  183 (346)
                      +....                                                               .+...+..+.++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (337)
T d1pbyb_         170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN  249 (337)
T ss_dssp             ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             eecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence            43210                                                               122334455566


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE  261 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~  261 (346)
                      | ++.+++.+  ++.|++||+.+.                       ..+..+ .+...+.+++|+  |++|++++.|+.
T Consensus       250 ~-~~~~~~~~--~~~i~v~d~~~~-----------------------~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         250 P-AKTRAFGA--YNVLESFDLEKN-----------------------ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             T-TSSEEEEE--ESEEEEEETTTT-----------------------EEEEEE-ECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             c-cceEEEEc--cccEEEEECCCC-----------------------cEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            6 55555544  478999999883                       233333 356678899998  889999999999


Q ss_pred             EEEEcCCCCC
Q 019117          262 IVLWEPKMKE  271 (346)
Q Consensus       262 i~iwd~~~~~  271 (346)
                      |++||..+.+
T Consensus       303 i~v~D~~t~~  312 (337)
T d1pbyb_         303 LAAYDAETLE  312 (337)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            9999999876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.2e-18  Score=142.92  Aligned_cols=269  Identities=10%  Similarity=-0.048  Sum_probs=161.8

Q ss_pred             EEEEeecCCCccEEEEEc------CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe--------
Q 019117           39 VVFNFIDSRYFNVFATVG------GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG--------  104 (346)
Q Consensus        39 ~~~~p~~~~~~~~la~~~------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~--------  104 (346)
                      .+.+|    +++.+++..      .+.|.+||..+++.+..+...       ....++|  +|||+ +|++.        
T Consensus         7 ~a~sp----dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-------~~~~~a~--SpDg~-~l~v~~~~~~~~~   72 (355)
T d2bbkh_           7 EAPAP----DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-------FLPNPVV--ADDGS-FIAHASTVFSRIA   72 (355)
T ss_dssp             CCCCC----CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-------SSCEEEE--CTTSS-CEEEEEEEEEETT
T ss_pred             EeeCC----CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-------CCCceEE--cCCCC-EEEEEeCCCcccc
Confidence            34556    667766543      223999999999887776532       1123555  49999 66553        


Q ss_pred             --ecCCeEEEEEccCcceeeeeccCCC-------ceEEEEEeCCCCceEEEe--eCCCCEEEEecCCCeeEEEecccC--
Q 019117          105 --GINGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICILIFAGAG--  171 (346)
Q Consensus       105 --~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~--  171 (346)
                        ..++.|++||+.+++.+..+..+..       ....++|+| ++..++.+  +.+..+.+|+..+++.+..+....  
T Consensus        73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc
Confidence              3478999999999998877654332       345688999 77766655  456789999999888776654211  


Q ss_pred             ----------------------------------------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceee
Q 019117          172 ----------------------------------------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV  211 (346)
Q Consensus       172 ----------------------------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  211 (346)
                                                              .+...+....+.+ ++..++.++.++.+.+|++.......
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~  230 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKF  230 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred             eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEE
Confidence                                                    0111122223333 44445556666777777766532211


Q ss_pred             eeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec----------CeEEEEcCCCCCCCCCCccc
Q 019117          212 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----------NEIVLWEPKMKEQSPGEGTA  279 (346)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~  279 (346)
                      .......           ..........+.....+.++  +..++....+          ..|.+||..+++        
T Consensus       231 ~~~~~~~-----------~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--------  291 (355)
T d2bbkh_         231 LPAVEAL-----------TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------  291 (355)
T ss_dssp             CCCEESS-----------CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------
T ss_pred             EeccCCc-----------ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--------
Confidence            1000000           00000000011112223343  5655555443          479999999876        


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-eEEEEEecCCC
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-FSLHVKYNPQS  344 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~spdg  344 (346)
                       .+..+.. ...+.+++|+||++..++++++.|+.|++||+++++.+..+...+ .+..+.+.++|
T Consensus       292 -~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         292 -RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             -EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             -EEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence             4444443 346889999999953356788889999999999999777665333 35667766665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=3.8e-18  Score=139.16  Aligned_cols=240  Identities=9%  Similarity=-0.043  Sum_probs=155.5

Q ss_pred             EcCCCCcEEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEeccc
Q 019117           93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGA  170 (346)
Q Consensus        93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~  170 (346)
                      ++++++ +|++++.+++|.+||+.+++.+.+++ .+...+.+++|+| +++++ +++..++.|.+||+.+++.+..+...
T Consensus         4 ~~~~~~-~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           4 LKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCCc-EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            458888 99999999999999999999998886 3566788999999 66655 66678999999999999988877632


Q ss_pred             CC---CCcceEEEEecCCCCcEEEEEe------------cCCeEEEEEccccceeeeeceeecCCCCCC-----CC----
Q 019117          171 GG---HRNEVLSVDFHPSDIYRIASCG------------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKF-----PT----  226 (346)
Q Consensus       171 ~~---~~~~v~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~----  226 (346)
                      ..   +...+..++|+| +++++++++            .++.+.+||.....................     ..    
T Consensus        82 ~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            11   123466899999 777776664            467889999887543221111110000000     00    


Q ss_pred             ---------ccceeceEEEeecc---------------------cceEEEE----ec--CCEEEEEeecCeEEEEcCCCC
Q 019117          227 ---------KYVQFPVFIASVHS---------------------NYVDCNR----WL--GDFILSKSVDNEIVLWEPKMK  270 (346)
Q Consensus       227 ---------~~~~~~~~~~~~~~---------------------~~i~~~~----~~--~~~l~~~~~d~~i~iwd~~~~  270 (346)
                               ......+..+..+.                     ..+....    +.  ...+.++..+..+.+||..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence                     00001111111111                     0000000    00  223445556677888888776


Q ss_pred             CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117          271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY  346 (346)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~  346 (346)
                      ..        .......+...+..+.+++++  .+++... ++.|++||+.+++.+........+.+++|||||++
T Consensus       241 ~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~  305 (346)
T d1jmxb_         241 KT--------HTQEFADLTELYFTGLRSPKD--PNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK  305 (346)
T ss_dssp             CE--------EEEEEEECSSCEEEEEECSSC--TTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSC
T ss_pred             ce--------EEEEeecccceeEEEEEeCCC--CEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCE
Confidence            52        233344566678889999988  4566554 46799999999988777777777899999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.8e-17  Score=131.90  Aligned_cols=296  Identities=13%  Similarity=0.094  Sum_probs=173.0

Q ss_pred             eeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEE-EcCCc-EEEEEeccCceeeeEeeeecCCCccceEE
Q 019117           11 LVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFAT-VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT   88 (346)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~-~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~   88 (346)
                      .+|.+..  ...+++.+. ..|.+.|..|+|+|    +|++|++ +..++ |.+|++........+.....  ....+..
T Consensus        17 ~v~~~~~--~~~l~~~~~-~~~~~~v~~la~sp----DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--~~~~p~~   87 (333)
T d1ri6a_          17 HVWNLNH--EGALTLTQV-VDVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTH   87 (333)
T ss_dssp             EEEEECT--TSCEEEEEE-EECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSE
T ss_pred             EEEEEcC--CCCeEEEEE-EcCCCCEeEEEEeC----CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--cCCCceE
Confidence            4454443  223444444 35778899999999    7887754 44455 99999987655443333221  2333444


Q ss_pred             EEEEEcCCCCcEEEEee-cCCeEEEEEccCcceeee--eccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeE
Q 019117           89 VSWACNVDGIPFLVAGG-INGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICI  164 (346)
Q Consensus        89 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~  164 (346)
                      ++|+  |||+ +|++++ .++.+.+|+.........  ...+...+.++.++| +++.++.++ .+..|.+|+.......
T Consensus        88 l~~s--pDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          88 ISTD--HQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             EEEC--TTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             EEEc--CCCC-EEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcc
Confidence            5554  9999 777776 477899999876654333  345667788999999 666666655 5567999998765332


Q ss_pred             EEec---ccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117          165 LIFA---GAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  240 (346)
Q Consensus       165 ~~~~---~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
                      ....   ........+..++|++ ++..+ .+....+...+|+.................+..             ....
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  229 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN-------------FSDT  229 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT-------------CCSC
T ss_pred             eeeeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccceeeeeeeeeeecC-------------CCcc
Confidence            2211   0113455678999998 55555 455566778888876532211111100000000             0112


Q ss_pred             cceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-EEcCCCcEE
Q 019117          241 NYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIF  316 (346)
Q Consensus       241 ~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~  316 (346)
                      .....+.++  ++++ +++..++.+.+|++......      ............+..++|+|||  ++|+ +++.++.|.
T Consensus       230 ~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~a~spDG--k~l~va~~~~~~v~  301 (333)
T d1ri6a_         230 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV------LSKEGFQPTETQPRGFNVDHSG--KYLIAAGQKSHHIS  301 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC------EEEEEEEECSSSCCCEEECTTS--SEEEEECTTTCEEE
T ss_pred             ccceeEEEecccCceeeecccCCeEEEEEEcCCCCE------EEEEEEeCCCCCeeEEEEeCCC--CEEEEEECCCCeEE
Confidence            233444555  5544 45566789999998765421      1112222233567789999999  5554 455678999


Q ss_pred             EEEc--CCCCcceeeee--eeeEEEEEec
Q 019117          317 VWEL--QSSPPVLIARL--ICFSLHVKYN  341 (346)
Q Consensus       317 iwd~--~~~~~~~~~~~--~~~~~~~~~s  341 (346)
                      +|++  ++|++..+...  ...+.++.++
T Consensus       302 v~~id~~tG~l~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         302 VYEIVGEQGLLHEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred             EEEEECCCCcEEEEEeccCCCCCcEEEEE
Confidence            9954  56654333333  3345555554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=8.4e-15  Score=120.54  Aligned_cols=254  Identities=7%  Similarity=-0.163  Sum_probs=139.3

Q ss_pred             CccceEEEEEEEcCCCCcEEEEe-----ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee--------
Q 019117           82 KEESFYTVSWACNVDGIPFLVAG-----GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS--------  148 (346)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------  148 (346)
                      +..++...+++  |+|+ .++..     +..+.|.+||..+++.+..+..+...  .++|+| ++++|++++        
T Consensus        19 ~~~p~~~~a~s--pdg~-~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~Sp-DG~~l~va~~~~~~~~~   92 (373)
T d2madh_          19 ADGPTNDEAPG--ADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAK   92 (373)
T ss_pred             CCCCccccccC--CCCC-EEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcC-CCCEEEEEeecCCcccc
Confidence            44555555554  9999 65543     23467999999999999988766543  799999 888887764        


Q ss_pred             --CCCCEEEEecCCCeeEEEecccCCCCcc-------eEEEEecCCCCcEEEEE--ecCCeEEEEEccccceeeeece--
Q 019117          149 --KDESVRLWNVQTGICILIFAGAGGHRNE-------VLSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSF--  215 (346)
Q Consensus       149 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~--  215 (346)
                        .++.|.+||..+++.+..+..   +...       ...+.|++ +++.++..  ..++.+.+|+....+.......  
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIEL---PDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPT  168 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEec---CCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEeccce
Confidence              457899999999988776652   2211       12344554 33332222  2233455555443221111000  


Q ss_pred             --eecCCCCC-C-----CCc------cceeceEEEe------ecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCC
Q 019117          216 --TWTDLPSK-F-----PTK------YVQFPVFIAS------VHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSP  274 (346)
Q Consensus       216 --~~~~~~~~-~-----~~~------~~~~~~~~~~------~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~  274 (346)
                        .+...... +     ...      ..........      ........+.+. +..++..+.++.+.+|+........
T Consensus       169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEE
Confidence              00000000 0     000      0000000110      111112233344 4456677788999999988764211


Q ss_pred             CCc---cccccccccCCCcCeeEEEEeecCCc--------ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117          275 GEG---TADILQKYPVPECDIWFIKFSCDFHY--------NAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQ  343 (346)
Q Consensus       275 ~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd  343 (346)
                      ...   .................+++++++..        ..+++...++.+.+||+.+++.+........+..++||||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spD  328 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD  328 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCC
Confidence            000   00000000111123344566666531        2345566778899999999998888777788899999999


Q ss_pred             CC
Q 019117          344 SV  345 (346)
Q Consensus       344 g~  345 (346)
                      |+
T Consensus       329 G~  330 (373)
T d2madh_         329 GG  330 (373)
T ss_pred             CC
Confidence            97

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=3.2e-15  Score=122.12  Aligned_cols=246  Identities=7%  Similarity=-0.104  Sum_probs=149.5

Q ss_pred             EcCCCCcEEEEe-----ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEe----------eCCCCEEEEe
Q 019117           93 CNVDGIPFLVAG-----GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA----------SKDESVRLWN  157 (346)
Q Consensus        93 ~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~iwd  157 (346)
                      ++|||+ .+++.     ..+..|.+||..+++.+.++..+..+  .++|+| ++++|++.          ..|+.|++||
T Consensus         9 ~spdg~-~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           9 PAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eCCCCC-EEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            459998 65553     34567999999999999988765444  799999 77777654          3478999999


Q ss_pred             cCCCeeEEEecccCCC----CcceEEEEecCCCCcEEEEEe--cCCeEEEEEccccceeeeecee---------------
Q 019117          158 VQTGICILIFAGAGGH----RNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFT---------------  216 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~---------------  216 (346)
                      +.+++.+..+.....+    ......++|+| ++..++.+.  .+..+.+|+....+........               
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            9999988877532222    22345689999 777666554  4568999999875432211100               


Q ss_pred             ecCCCCCCC-CccceeceEEE------eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc---ccccc
Q 019117          217 WTDLPSKFP-TKYVQFPVFIA------SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA---DILQK  284 (346)
Q Consensus       217 ~~~~~~~~~-~~~~~~~~~~~------~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~  284 (346)
                      ......... ...........      ..+...+....+.  +..++.++.++.+.+|++..++........   .....
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence            000000000 00000000000      0111122233343  668888899999999999887532111000   00000


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcC----------CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNR----------EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      ..........+++++++.  .++....          ...|.+||..+++.+........+.+++|+|||+
T Consensus       244 ~~~~p~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~  312 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALD--RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK  312 (355)
T ss_dssp             TTEEECSSSCEEEETTTT--EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSS
T ss_pred             eeeeccceEEEEEeCCCC--eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCC
Confidence            011112345578999984  4444332          2479999999999887777778889999999997

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=2.4e-15  Score=123.69  Aligned_cols=284  Identities=8%  Similarity=-0.118  Sum_probs=169.9

Q ss_pred             eeeeecccCCCceEEEEEEeecCCCccEEEEEcC----------Cc-EEEEEeccCceeeeEeeeecCC--CccceEEEE
Q 019117           24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----------NR-VTVYQCLEGGVIAALQSYVDED--KEESFYTVS   90 (346)
Q Consensus        24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~----------~~-v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~   90 (346)
                      ++..++.++..+  .++|+|    +|+.+++.+.          ++ |.+||..+++....+.......  .......++
T Consensus        57 ~~~~~~~~~~~~--~~a~sp----Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a  130 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             EEEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             cEEEEEeCCCCC--cceECC----CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceE
Confidence            344445555544  588999    7887777542          33 9999999988877765321110  111122245


Q ss_pred             EEEcCCCCcEEEEee-cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117           91 WACNVDGIPFLVAGG-INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG  169 (346)
Q Consensus        91 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  169 (346)
                      |  +|||+ +|+++. .++.+.+||+.+++.+..+..+....    +.|.....+++.+.||.+.++++...........
T Consensus       131 ~--SpDGk-~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         131 N--CASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             E--CTTSS-CEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             E--CCCCC-EEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            5  49999 666554 67999999999999888887655432    2222456778888899999998876544332221


Q ss_pred             ---cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117          170 ---AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       170 ---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                         ...+...+....+.+ ++..+.+.  .+.+.++++............      ........  . ...........+
T Consensus       204 ~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~--~-~~~~~g~~~~a~  271 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANY-PGMLVWAV--ASSILQGDIPAAGATMKAAID------GNESGRKA--D-NFRSAGFQMVAK  271 (368)
T ss_dssp             CCSCTTSCBCSCCEEETT-TTEEEECB--SSCCEEEECCSSCCEEECCCC------SSCTHHHH--T-TEEECSSSCEEE
T ss_pred             cccccccccceeeccccc-CcEEEEec--CCCEEEEeecCCceEEEeecc------cccceeee--e-eecCCCceeEEE
Confidence               113445556677776 66655544  355666666552221111000      00000000  0 001111112223


Q ss_pred             EecCCEEEEEeec---------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117          247 RWLGDFILSKSVD---------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  317 (346)
Q Consensus       247 ~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i  317 (346)
                      ...+..++....+         ..|.+||..+++         .+..+.. ...+..++|+||++..+++++..|+.|++
T Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---------~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v  341 (368)
T d1mdah_         272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             cCCCCEEEEEecCCCceeecCCceEEEEECCCCc---------EeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEE
Confidence            3335554444322         359999999887         4444443 34688899999995335678888999999


Q ss_pred             EEcCCCCcceeeeeeeeEEEEEecC
Q 019117          318 WELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                      ||..+++.+..+.+...+..|++-+
T Consensus       342 ~D~~tgk~~~~i~~g~~P~~l~~~~  366 (368)
T d1mdah_         342 YDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EECCCCCEEEEEECCCCCCEEEEec
Confidence            9999999888777776677776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=6.1e-14  Score=115.18  Aligned_cols=249  Identities=6%  Similarity=-0.171  Sum_probs=143.5

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccCCC
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      +.+||..+++.+..+...     ...  .++|  +|||+ .|++.+          .|+.|.+||..+++.+..+..+..
T Consensus        48 ~~~~d~~~~~~~~~~~~~-----~~~--~~a~--spDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSLGA-----FLS--LAVA--GHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEETTTTEEEEEEEEC-----TTC--EEEE--CTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             EEEEeCCCCcEEEEEeCC-----CCC--cceE--CCCCC-EEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            778898888877766542     111  2455  49998 666643          477899999999998887764432


Q ss_pred             -------ceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117          130 -------SINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  201 (346)
Q Consensus       130 -------~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  201 (346)
                             ....++|+| ++++++++. .++.+.+||+.+++.+..+.   .+....    ..|.+...++..+.||.+.+
T Consensus       118 ~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~---~~~~~~----~~~~~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTK---SASCFH----IHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             CSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEE---CSSCCC----CEEEETTEEECCCCTTSCEE
T ss_pred             ceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEee---ccCcce----EccCCCceEEEEcCCCCEEE
Confidence                   234689999 777776664 67999999999999988886   233221    12224556777788888888


Q ss_pred             EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCc---c
Q 019117          202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG---T  278 (346)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~  278 (346)
                      +++.............                 ....+...+....+.....+.....+.+.+++...........   .
T Consensus       190 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         190 SDLAAAPAAAGIVGAQ-----------------CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EECCSSCCCCEECCCC-----------------SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSS
T ss_pred             EEecCCceeeeeeecc-----------------cccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccc
Confidence            8877632211110000                 0000111111222221111112223344444444332110000   0


Q ss_pred             ccccccccCCCcCeeEEEEeecCCcceEEEEc-C--------CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117          279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R--------EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV  345 (346)
Q Consensus       279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~--------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~  345 (346)
                      ................+++++++.  .++... .        ...|.+||..+++.+........+..++|||||+
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~--~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~  326 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTD--GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGA  326 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTT--EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSS
T ss_pred             cceeeeeeecCCCceeEEEcCCCC--EEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCC
Confidence            000000001112234578899884  333322 1        2359999999998877777777888999999996

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=4.4e-13  Score=113.72  Aligned_cols=156  Identities=12%  Similarity=0.051  Sum_probs=111.3

Q ss_pred             EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---------C
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---------N  107 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---------d  107 (346)
                      ..+.|.+    +++++.. .++.+.+||..+++....+.......+...+.+..|+  |||+ +|+.++.         +
T Consensus        20 ~~~~W~~----d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S--pDg~-~i~~~~~~~~~~r~s~~   91 (470)
T d2bgra1          20 YSLRWIS----DHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQ-FILLEYNYVKQWRHSYT   91 (470)
T ss_dssp             CCCEECS----SSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC--TTSS-EEEEEEEEEECSSSCEE
T ss_pred             cCCEeCC----CCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC--CCCC-EEEEEECCcceeeeccC
Confidence            3577887    5666654 4555999999999887666654444456677776666  9999 8887743         5


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC---------------C
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---------------G  172 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------~  172 (346)
                      +.+.+||+.+++. ..+..+...+..+.|+| +++.++... ++.+.+|+...++..+......               .
T Consensus        92 ~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          92 ASYDIYDLNKRQL-ITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEEEEEETTTTEE-CCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ceEEEEECCCCcc-cccccCCcccccccccc-CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            6789999998874 45777889999999999 888888865 6789999999887665443110               0


Q ss_pred             CCcceEEEEecCCCCcEEEEEecCCe-EEEEEc
Q 019117          173 HRNEVLSVDFHPSDIYRIASCGMDNT-VKIWSM  204 (346)
Q Consensus       173 ~~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~  204 (346)
                      ..+....+.|+| +++.|+....|.+ +..|++
T Consensus       169 ~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         169 VFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSSSBCEEECT-TSSEEEEEEEECTTCCEEEE
T ss_pred             ecCCccccEECC-CCCccceeEecCCcCceEEE
Confidence            123345688999 8888888765533 554444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.51  E-value=5.7e-12  Score=103.18  Aligned_cols=285  Identities=11%  Similarity=0.014  Sum_probs=158.8

Q ss_pred             EEEEEcCCc-EEEEEeccCceeeeEeeeecCC-------------------------CccceEEEEEEEcCCCCcEEEEe
Q 019117           51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDED-------------------------KEESFYTVSWACNVDGIPFLVAG  104 (346)
Q Consensus        51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~~~~l~~~  104 (346)
                      .|++++.++ |.+|++.+++.++.+..|....                         |.....  ....+|||+.++++.
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s--~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHIS--MTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEE--EETTEEEEEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcc--eecccCCCCEEEEEc
Confidence            356666666 9999999999888877654221                         111111  222358899333555


Q ss_pred             ecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCc--eEEEeeCCC-----------------CEEEEecCCCeeE
Q 019117          105 GINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPS--LVVSASKDE-----------------SVRLWNVQTGICI  164 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~l~s~~~d~-----------------~i~iwd~~~~~~~  164 (346)
                      ..++.|.++|+.+.+....+. .+...+..++|+| +++  +++..+++.                 .+..+|..+.+..
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            678899999999998877654 3567889999999 555  343333322                 1345788877777


Q ss_pred             EEecccCCCCcceEEEEecCCCCcEEEEEecCC---------------eEEEEEccccceeee-eceeecC-CC-CCCCC
Q 019117          165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---------------TVKIWSMKEFWTYVE-KSFTWTD-LP-SKFPT  226 (346)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---------------~i~iwd~~~~~~~~~-~~~~~~~-~~-~~~~~  226 (346)
                      ..+.    -.+.+..++++| +++++++.+.+.               .|.+.+......... ....... .. .....
T Consensus       170 ~qI~----v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         170 WQVI----VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             EEEE----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             EEEe----cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            7665    345678899999 777777766543               222332221100000 0000000 00 00000


Q ss_pred             ccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCC--ccccccccccCCCcCeeEEEEeecC
Q 019117          227 KYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGE--GTADILQKYPVPECDIWFIKFSCDF  301 (346)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~  301 (346)
                      ......+..+... .....+.++  |+++ +++..+++|.+||+...+.....  .....+.......-.....+|.+++
T Consensus       245 ~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g  323 (441)
T d1qnia2         245 RGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG  323 (441)
T ss_dssp             SSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             ccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence            0111122333332 224456666  7766 45677999999998764311000  0001111111111223456788888


Q ss_pred             CcceEEEEcCCCcEEEEEcCCC------C---cc-eeee---eeeeE---EEEEecCCCCC
Q 019117          302 HYNAAAIGNREGKIFVWELQSS------P---PV-LIAR---LICFS---LHVKYNPQSVY  346 (346)
Q Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~------~---~~-~~~~---~~~~~---~~~~~spdg~~  346 (346)
                        ..+.+...|..|..|++...      +   ++ ....   ..+|.   .+.+++|||+|
T Consensus       324 --~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~  382 (441)
T d1qnia2         324 --NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW  382 (441)
T ss_dssp             --EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred             --eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcE
Confidence              68889999999999998521      1   11 1111   13453   34779999987

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=6.4e-12  Score=106.42  Aligned_cols=115  Identities=13%  Similarity=0.007  Sum_probs=80.1

Q ss_pred             eecccCCCceEEEEEEeecCCCccEEEEEcC---------Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117           27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGG---------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD   96 (346)
Q Consensus        27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~---------~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (346)
                      ..+..|...|.++.|||    ||+.||.++.         ++ +.+||+.+++.. .+..     +.+.+....|+  ||
T Consensus        55 ~~~~~~~~~i~~~~~Sp----Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~-----~~~~~~~~~~S--PD  122 (470)
T d2bgra1          55 STFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEER-----IPNNTQWVTWS--PV  122 (470)
T ss_dssp             TTTTTSSSCCCEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSC-----CCTTEEEEEEC--SS
T ss_pred             hhhhhccCccceeEECC----CCCEEEEEECCcceeeeccCceEEEEECCCCccc-cccc-----CCccccccccc--cC
Confidence            35577788999999999    8899888753         23 789998877543 2332     55666666665  99


Q ss_pred             CCcEEEEeecCCeEEEEEccCcceeeeecc------------------CCCceEEEEEeCCCCceEEEeeCCCC-EEEE
Q 019117           97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVG------------------HGDSINEIRTQPLKPSLVVSASKDES-VRLW  156 (346)
Q Consensus        97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~s~~~d~~-i~iw  156 (346)
                      |+ .+|... ++.+.+|+..+++..+....                  ..+....+.|+| +++.|+....|.+ +..|
T Consensus       123 G~-~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         123 GH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             TT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEE
T ss_pred             cc-eeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceE
Confidence            99 777754 77899999988876543321                  123346688999 8888888765433 4433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=1.2e-11  Score=101.36  Aligned_cols=268  Identities=8%  Similarity=-0.029  Sum_probs=158.6

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCC-c-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGN-R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI  109 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~-~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  109 (346)
                      |.-......++|    ||++|.+.... . |.++|+.+.+..+.+..    ........++++  |+|+...+++..+..
T Consensus        70 hhP~~s~t~gtp----DGr~lfV~d~~~~rVavIDl~t~k~~~ii~i----P~g~gphgi~~s--pdg~t~YV~~~~~~~  139 (441)
T d1qnia2          70 HHPHISMTDGRY----DGKYLFINDKANTRVARIRLDIMKTDKITHI----PNVQAIHGLRLQ--KVPKTNYVFCNAEFV  139 (441)
T ss_dssp             CCCEEEEETTEE----EEEEEEEEETTTTEEEEEETTTTEEEEEEEC----TTCCCEEEEEEC--CSSBCCEEEEEECSC
T ss_pred             cCCCcceecccC----CCCEEEEEcCCCCEEEEEECCCCcEeeEEec----CCCCCccceEEe--ccCCEEEEEeccCCc
Confidence            444556666778    78888666433 3 99999998887766542    134556666666  777643333333333


Q ss_pred             ------------------EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---------------------
Q 019117          110 ------------------IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---------------------  150 (346)
Q Consensus       110 ------------------i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------------  150 (346)
                                        +..+|..+.+....+... +....+.++| +++++++.+.+                     
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~  217 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVF  217 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE
T ss_pred             ccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeC
Confidence                              345787777777666543 4578899999 77776665533                     


Q ss_pred             --------------------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE-EEEEecCCeEEEEEccccce
Q 019117          151 --------------------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTVKIWSMKEFWT  209 (346)
Q Consensus       151 --------------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~  209 (346)
                                          +.+.+++....+.+..+.    -......+.++| ++++ ++++..+++|.+||+...+.
T Consensus       218 n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IP----vgksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         218 NVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIP----VPKNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             EHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEEC----CBSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             CccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEe----CCCCccCceECC-CCCEEEEeCCcCCcEEEEEeehhhh
Confidence                                344555545455555554    234467899999 6665 56677899999999988543


Q ss_pred             eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC-CCcccccccc--
Q 019117          210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP-GEGTADILQK--  284 (346)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~--  284 (346)
                      ........            ...+.......-.....+|+  |..+.+...|..|..|++....... .......+..  
T Consensus       293 ~~~~~~~~------------~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~  360 (441)
T d1qnia2         293 LFEDKIEL------------RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLD  360 (441)
T ss_dssp             HTTTSSCG------------GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEE
T ss_pred             HhhccCCc------------ceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccc
Confidence            22111000            00111101111112334566  5567777789999999975221000 0000012222  


Q ss_pred             ---ccCCCcCeeEEEEeecCCcceEEEE---cCCC----------cEEEEEcCCCCcceeee
Q 019117          285 ---YPVPECDIWFIKFSCDFHYNAAAIG---NREG----------KIFVWELQSSPPVLIAR  330 (346)
Q Consensus       285 ---~~~~~~~v~~~~~s~~~~~~~l~~~---~~dg----------~i~iwd~~~~~~~~~~~  330 (346)
                         ..+|...+.+.+++|||  ++|+++   +.|.          .-.+.|+...+...+..
T Consensus       361 v~y~~GH~~~~~~~t~~pdG--k~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~  420 (441)
T d1qnia2         361 VQYQPGHNHASLTESRDADG--KWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHD  420 (441)
T ss_dssp             CSSCEEEEEETTTTSTTCCC--CEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEE
T ss_pred             cccCCCCCccccccccCCCC--cEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEec
Confidence               25677777778899999  799999   5554          35677887655444433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.32  E-value=7.5e-09  Score=81.74  Aligned_cols=253  Identities=11%  Similarity=0.020  Sum_probs=155.6

Q ss_pred             ceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceE
Q 019117            9 EPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY   87 (346)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~   87 (346)
                      .++.+.-++-...+.+.+..+... ..+..++++|    +|+++++...++ |..++  .......+..     ....+.
T Consensus         4 ~~~~~~~~~~~~~~~~v~~~~p~~-~~~e~iAv~p----dG~l~vt~~~~~~I~~i~--p~g~~~~~~~-----~~~~~~   71 (302)
T d2p4oa1           4 LPPIYADKPIELAPAKIITSFPVN-TFLENLASAP----DGTIFVTNHEVGEIVSIT--PDGNQQIHAT-----VEGKVS   71 (302)
T ss_dssp             SCCTTTTSCBCCCCEEEEEEECTT-CCEEEEEECT----TSCEEEEETTTTEEEEEC--TTCCEEEEEE-----CSSEEE
T ss_pred             cCcccccCcccCCcccEEEECCCC-CCcCCEEECC----CCCEEEEeCCCCEEEEEe--CCCCEEEEEc-----CCCCcc
Confidence            344444344334445555555332 2588999999    889999988777 66666  3333333322     334566


Q ss_pred             EEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-eeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117           88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI  164 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  164 (346)
                      .+++.  ++|+ ++++...++.+..++...... ...+  .......+.+++.+ ++.++++.+.++.+..+|...+...
T Consensus        72 gla~~--~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1          72 GLAFT--SNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             EEEEC--TTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEc--CCCC-eEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcce
Confidence            66655  9998 888888888888888754432 1122  12445688999999 8888888888888988888876543


Q ss_pred             EEeccc-------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117          165 LIFAGA-------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  237 (346)
Q Consensus       165 ~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
                      ......       .........+.++  +..++++.+..+.|..+++.......                     .....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~---------------------~~~~~  204 (302)
T d2p4oa1         148 IWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPG---------------------EPEIF  204 (302)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBC---------------------CCEEE
T ss_pred             eEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccccccccc---------------------ccccc
Confidence            322210       0122345677776  45677777888899888877622110                     00111


Q ss_pred             ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE---eecCCcceEEEEc
Q 019117          238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF---SCDFHYNAAAIGN  310 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~~~l~~~~  310 (346)
                      ........++++  |++.++...++.|..++.....        ..+..........++++|   ++|+  +.|..++
T Consensus       205 ~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~--------~~~~~~~~~~~~pt~vafg~~~~D~--~~Lyvtt  272 (302)
T d2p4oa1         205 VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGSTAVAFGQTEGDC--TAIYVVT  272 (302)
T ss_dssp             EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTEEEEEECCSTTTT--TEEEEEE
T ss_pred             cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE--------EEEEecCCCCCCceEEEEcCCCCCC--CEEEEEC
Confidence            123334567776  7888887788999999876532        123333333456789999   5566  4454443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=1.8e-08  Score=78.46  Aligned_cols=243  Identities=11%  Similarity=0.112  Sum_probs=154.8

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC-CCccceEEEEEEEcCCCCcEEE-EeecCCeEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE-DKEESFYTVSWACNVDGIPFLV-AGGINGIIR  111 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~-~~~~dg~i~  111 (346)
                      ....|+++|    +++++++-..+. |++||. +++.+..+...... ........+++.  .+...+++ ..+.++.|.
T Consensus        24 ~P~gvavd~----dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          24 EPSGVAVNA----QNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CEEEEEECT----TCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGCEEE
T ss_pred             CccEEEEcC----CCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCccccccccccccc--ccccccceeccCCccccc
Confidence            468999988    678888765555 999984 46665555332111 111122334443  33321444 345566888


Q ss_pred             EEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117          112 VIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI  190 (346)
Q Consensus       112 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  190 (346)
                      .++. .++....+. ........+++.+ ++.++++....+.+.+++. +++.+..+... .+......+++.+ +++++
T Consensus        97 ~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~-~~~~~~~~i~~d~-~g~i~  171 (279)
T d1q7fa_          97 IYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCS-KHLEFPNGVVVND-KQEIF  171 (279)
T ss_dssp             EECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECT-TTCSSEEEEEECS-SSEEE
T ss_pred             cccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeeccccc-ccccccceeeecc-ceeEE
Confidence            8875 456555553 3445678899998 7777777777778888885 46667666422 3566788999997 88888


Q ss_pred             EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE--eecccceEEEEec--CCEEEEEee-cCeEEEE
Q 019117          191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL--GDFILSKSV-DNEIVLW  265 (346)
Q Consensus       191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iw  265 (346)
                      ++....+.|.+||....                        .+..+  .+.......++++  |+++++-.. ++.|.+|
T Consensus       172 v~d~~~~~V~~~d~~G~------------------------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         172 ISDNRAHCVKVFNYEGQ------------------------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             EEEGGGTEEEEEETTCC------------------------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             eeeccccceeeeecCCc------------------------eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence            88888899999997651                        11111  1123345667776  776666443 4579999


Q ss_pred             cCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117          266 EPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  326 (346)
Q Consensus       266 d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (346)
                      +.. ++         .+..+..  .......+++.+|+  .+++ .+.++.|++|......|+
T Consensus       228 ~~~-G~---------~~~~~~~~~~~~~p~~vav~~dG--~l~V-~~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         228 TQD-GQ---------LISALESKVKHAQCFDVALMDDG--SVVL-ASKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             CTT-SC---------EEEEEEESSCCSCEEEEEEETTT--EEEE-EETTTEEEEEECSCCCCT
T ss_pred             CCC-CC---------EEEEEeCCCCCCCEeEEEEeCCC--cEEE-EeCCCeEEEEEeeeecCC
Confidence            854 33         2333321  22357889999998  4444 557899999999887653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.4e-08  Score=78.67  Aligned_cols=231  Identities=9%  Similarity=0.028  Sum_probs=128.6

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-C--eEEEEEccCcceeeeeccCCCceEEEEE
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-G--IIRVIDVSNEKLHKSFVGHGDSINEIRT  136 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  136 (346)
                      |.|.|.. |.....+..     ....+..-+|+  |||+ .||-.... +  .+.+.+...+... .+..+........|
T Consensus        21 l~i~d~d-G~~~~~l~~-----~~~~~~sP~wS--PDGk-~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          21 LRVSDYD-GYNQFVVHR-----SPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEETT-SCSCEEEEE-----ESSCEEEEEEC--TTSS-EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEE
T ss_pred             EEEEcCC-CCCcEEEec-----CCCceeeeEEC--CCCC-EEEEEEeeccCcceeeeecccCcee-EEeeeeccccccee
Confidence            6666744 444444432     23445455555  9999 77655433 2  4666666655543 34446778889999


Q ss_pred             eCCCCceEEEee-CCCCEEEEec--CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE--Eccccceee
Q 019117          137 QPLKPSLVVSAS-KDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW--SMKEFWTYV  211 (346)
Q Consensus       137 ~~~~~~~l~s~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw--d~~~~~~~~  211 (346)
                      +| ++..++... .++...++..  ..........    .........+++.....+++...++...+|  ++...    
T Consensus        91 sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~----  161 (269)
T d2hqsa1          91 SP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG----  161 (269)
T ss_dssp             CT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS----
T ss_pred             cC-CCCeeeEeeecCCccceeecccccccceeeee----ccccccccccccccccceecccccCCceEeeeecccc----
Confidence            99 666655443 3444333332  2233222222    344444556666455556666666654444  44331    


Q ss_pred             eeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec-CeEEEE--cCCCCCCCCCCcccccccccc
Q 019117          212 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD-NEIVLW--EPKMKEQSPGEGTADILQKYP  286 (346)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-~~i~iw--d~~~~~~~~~~~~~~~~~~~~  286 (346)
                                          .......+........|+  ++.++..+.+ +...+|  +.....           ....
T Consensus       162 --------------------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~  210 (269)
T d2hqsa1         162 --------------------APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----------VQVL  210 (269)
T ss_dssp             --------------------CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-----------EEEC
T ss_pred             --------------------cceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-----------ceEe
Confidence                                112222334444555565  6666665554 344444  443332           1222


Q ss_pred             CCCcCeeEEEEeecCCcceEEEEc---CCCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117          287 VPECDIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSPPVLIARLICFSLHVKYNP  342 (346)
Q Consensus       287 ~~~~~v~~~~~s~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp  342 (346)
                      ..........|||||+  .|+-.+   ....|+++++..+....+....+.+...+|||
T Consensus       211 ~~~~~~~~p~~SPDG~--~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         211 SSTFLDETPSLAPNGT--MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCSSSCEEEEECTTSS--EEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             ecCccccceEECCCCC--EEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            2344566788999994  554333   34578999999887666666666778899999

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.24  E-value=4.1e-08  Score=77.71  Aligned_cols=245  Identities=10%  Similarity=-0.006  Sum_probs=144.3

Q ss_pred             eEEEEEEeecCCCccEEEEEcCC--------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           36 LYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~~~--------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      .-.++|.|    +|+++++....        .|..||..++......... ..........+  .+++++. .++++...
T Consensus        20 ~EGpa~d~----dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~-~~~~~g~P~Gl--~~~~dg~-~l~vad~~   91 (314)
T d1pjxa_          20 AEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE-VNGYGGIPAGC--QCDRDAN-QLFVADMR   91 (314)
T ss_dssp             CEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE-ETTEECCEEEE--EECSSSS-EEEEEETT
T ss_pred             CeEeEEeC----CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCc-cccCCCcceeE--EEeCCCC-EEEEEECC
Confidence            45678888    78888775542        2667776555432222111 00011122334  4458887 77777777


Q ss_pred             CeEEEEEccCcceeeeeccCC----CceEEEEEeCCCCceEEEeeC---------------CCCEEEEecCCCeeEEEec
Q 019117          108 GIIRVIDVSNEKLHKSFVGHG----DSINEIRTQPLKPSLVVSASK---------------DESVRLWNVQTGICILIFA  168 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~  168 (346)
                      +.|...+.+.+..........    ...+.+++.+ ++.+.++-..               +|.|..++. .++......
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~  169 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT  169 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC
Confidence            778888976554322111111    1357899999 7777766422               223444443 244333332


Q ss_pred             ccCCCCcceEEEEecCCCC-----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccc
Q 019117          169 GAGGHRNEVLSVDFHPSDI-----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNY  242 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (346)
                          .....+.++|+| ++     .++++-+..+.|..||+.........                 .....+.. ....
T Consensus       170 ----~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-----------------~~~~~~~~~~~~~  227 (314)
T d1pjxa_         170 ----AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-----------------KVWGHIPGTHEGG  227 (314)
T ss_dssp             ----EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-----------------EEEEECCCCSSCE
T ss_pred             ----CcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCcccccee-----------------eEEEEcccccccc
Confidence                334457899988 43     25566677888999988652211100                 00111111 1223


Q ss_pred             eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117          243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  320 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~  320 (346)
                      ...++++  |++.++....+.|.+||.+.++         .+..+..+....++++|.||++ .++++.+.+|.|...++
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~---------~~~~i~~p~~~~t~~afg~d~~-~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTK-TIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSS-EEEEEETTTTEEEEEEC
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCE---------EEEEEECCCCCEEEEEEeCCCC-EEEEEECCCCcEEEEEC
Confidence            4567776  7877777778999999988765         3444455556788999999884 46777888898888887


Q ss_pred             CC
Q 019117          321 QS  322 (346)
Q Consensus       321 ~~  322 (346)
                      ..
T Consensus       298 ~~  299 (314)
T d1pjxa_         298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            55

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=1.2e-08  Score=78.59  Aligned_cols=236  Identities=11%  Similarity=-0.019  Sum_probs=139.5

Q ss_pred             CceEEEEEEeecCCCccEEEEEcCC-c-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGGN-R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR  111 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~~-~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  111 (346)
                      ..-.+|++.+    +|.++++.... + +..++......  ......   .......+++  +++|. ++++....+.++
T Consensus        14 ~~P~~vavd~----dG~i~v~~~~~~~~i~~~~~~~~~~--~~~~~~---~~~~p~gvav--~~~g~-i~v~d~~~~~i~   81 (260)
T d1rwia_          14 LSPSGVAVDS----AGNVYVTSEGMYGRVVKLATGSTGT--TVLPFN---GLYQPQGLAV--DGAGT-VYVTDFNNRVVT   81 (260)
T ss_dssp             CCEEEEEECT----TCCEEEEECSSSCEEEEEC----CE--EECCCC---SCCSCCCEEE--CTTCC-EEEEETTTEEEE
T ss_pred             CCCCEEEEcC----CCCEEEEEcCCCCEEEEEcCCCceE--EEeccC---CccCceEEEE--cCCCC-EEEeeeeeceee
Confidence            3457899987    67877665433 4 55554333222  111111   1112233444  48888 777777667777


Q ss_pred             EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117          112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA  191 (346)
Q Consensus       112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  191 (346)
                      +++-.+...+..... .....++++.+ +++++++-.....+..++....... .+..  .......+++++| ++++++
T Consensus        82 ~~~~~~~~~~~~~~~-~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~--~~~~~p~~i~~~~-~g~~~v  155 (260)
T d1rwia_          82 LAAGSNNQTVLPFDG-LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-VLPF--TGLNDPDGVAVDN-SGNVYV  155 (260)
T ss_dssp             ECTTCSCCEECCCCS-CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCE-ECCC--CSCCSCCEEEECT-TCCEEE
T ss_pred             eeeeccceeeeeeee-eeecccccccc-cceeEeeccccccccccccccceee-eeee--cccCCcceeeecC-CCCEee
Confidence            666555544433332 34578999998 7777777666667777776543322 2211  1234567899998 778888


Q ss_pred             EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117          192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  269 (346)
                      +...++.|..+|......                       .......-.....++++  |+++++....+.|..++...
T Consensus       156 ~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         156 TDTDNNRVVKLEAESNNQ-----------------------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEGGGTEEEEECTTTCCE-----------------------EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             ecccccccccccccccee-----------------------eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            888888999998876211                       00111222344667776  67777777788888888765


Q ss_pred             CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117          270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  321 (346)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~  321 (346)
                      ...        .+.. ...-.....|++++++  .++++-..+++|+.++..
T Consensus       213 ~~~--------~~~~-~~~~~~P~~i~~d~~g--~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         213 TTS--------TVLP-FTGLNTPLAVAVDSDR--TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SCC--------EECC-CCSCCCEEEEEECTTC--CEEEEEGGGTEEEEECCC
T ss_pred             CeE--------EEEc-cCCCCCeEEEEEeCCC--CEEEEECCCCEEEEEeCC
Confidence            431        1111 1112356789999988  677776677777665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=9e-09  Score=79.37  Aligned_cols=215  Identities=12%  Similarity=0.007  Sum_probs=130.5

Q ss_pred             EEEEEEEcCCCCcEEEE-eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE
Q 019117           87 YTVSWACNVDGIPFLVA-GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL  165 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  165 (346)
                      ..+++  +++|. +.++ .+..+.+..++............-......+++.+ ++.++++....+.+++++-.+...+.
T Consensus        17 ~~vav--d~dG~-i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          17 SGVAV--DSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             EEEEE--CTTCC-EEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CEEEE--cCCCC-EEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence            44555  48888 5444 45567777776554432222222223457889998 77887777777777776655554443


Q ss_pred             EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE
Q 019117          166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  245 (346)
Q Consensus       166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (346)
                      ...    ....+.++++.+ +++++++-..+..+..++.........                       ...-......
T Consensus        93 ~~~----~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~p~~  144 (260)
T d1rwia_          93 PFD----GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVL-----------------------PFTGLNDPDG  144 (260)
T ss_dssp             CCC----SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEEC-----------------------CCCSCCSCCE
T ss_pred             eee----eeeecccccccc-cceeEeeccccccccccccccceeeee-----------------------eecccCCcce
Confidence            332    345678999998 778777766666777776655211000                       0001122345


Q ss_pred             EEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117          246 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  323 (346)
Q Consensus       246 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~  323 (346)
                      ++++  ++++++...++.|..++......         .............+++.+++  .++++....+.|..++....
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~p~gi~~d~~g--~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC--CEEEEETTTTEEEEECTTCS
T ss_pred             eeecCCCCEeeecccccccccccccccee---------eeeeccccCCCccceeeeee--eeeeeecCCCEEEEEeCCCC
Confidence            5555  77778878888999999876531         11111223456789999988  67888888888988886654


Q ss_pred             Ccceeeeee--eeEEEEEecCCCC
Q 019117          324 PPVLIARLI--CFSLHVKYNPQSV  345 (346)
Q Consensus       324 ~~~~~~~~~--~~~~~~~~spdg~  345 (346)
                      . .......  ..+..++++++|.
T Consensus       214 ~-~~~~~~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         214 T-STVLPFTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             C-CEECCCCSCCCEEEEEECTTCC
T ss_pred             e-EEEEccCCCCCeEEEEEeCCCC
Confidence            3 2222222  2467899999885

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=4.2e-09  Score=83.24  Aligned_cols=228  Identities=9%  Similarity=0.013  Sum_probs=142.6

Q ss_pred             eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC--ee
Q 019117           86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--IC  163 (346)
Q Consensus        86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~  163 (346)
                      +..+++.  |||+ ++++...+++|..|+....  ...+......+.+++|.+ +++++++...++.+..|+....  ..
T Consensus        30 ~e~iAv~--pdG~-l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          30 LENLASA--PDGT-IFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             EEEEEEC--TTSC-EEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cCCEEEC--CCCC-EEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccce
Confidence            4446555  9999 9999988999988886533  333444667899999999 8888888888888888876533  22


Q ss_pred             EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117          164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  243 (346)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (346)
                      ......  ........+++.+ ++.++++.+.++.+..+|.................             ..........
T Consensus       104 ~~~~~~--~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  167 (302)
T d2p4oa1         104 ETLLTL--PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR-------------SNSESVFPAA  167 (302)
T ss_dssp             EEEEEC--TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC-------------SSTTCCSCSE
T ss_pred             eecccc--CCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccce-------------eeccCccccc
Confidence            221111  2456788999998 88888888888888888887633211110000000             0000111234


Q ss_pred             EEEEecCC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          244 DCNRWLGD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       244 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      ..+.++++ ++++.+..+.|..++.........      . ...........+++.++|  .+.++...++.|..++...
T Consensus       168 ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~------~-~~~~~~~~pdgia~d~dG--~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         168 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE------P-EIFVEQTNIDDFAFDVEG--NLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEEBCTTSCBCC------C-EEEEESCCCSSEEEBTTC--CEEEECBTTCCEEEECTTC
T ss_pred             ccccccCCceeeecCCCCeEEeccccccccccc------c-ccccCCCCCcceEECCCC--CEEEEEcCCCcEEEECCCC
Confidence            45666644 555556688888888776532110      0 111112345679999999  6777777788999997654


Q ss_pred             CCcceeeeeee---eEEEEEe---cCCCC
Q 019117          323 SPPVLIARLIC---FSLHVKY---NPQSV  345 (346)
Q Consensus       323 ~~~~~~~~~~~---~~~~~~~---spdg~  345 (346)
                       +.........   .++.++|   +||++
T Consensus       239 -~~~~~~~~~~~~~~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         239 -STTIIAQAEQGVIGSTAVAFGQTEGDCT  266 (302)
T ss_dssp             -CEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             -CEEEEEecCCCCCCceEEEEcCCCCCCC
Confidence             3333333222   3688999   67765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=1.1e-07  Score=76.95  Aligned_cols=272  Identities=10%  Similarity=0.016  Sum_probs=139.7

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE-Eee-cCCe
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV-AGG-INGI  109 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-~~~-~dg~  109 (346)
                      ....+.-|+|+|    ++++|.++..+.+..|.+.....+.........   ...  ....++++++..++ ++. ..+.
T Consensus        38 ~~~~~s~la~s~----d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~p--~~v~~~~~~~~~~v~~a~~~~~~  108 (365)
T d1jofa_          38 QDEPISWMTFDH----ERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIG---GHP--RANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             TTCCCSEEEECT----TSSEEEEEEBTEEEEEEEEETTEEEEEEEEECC---SSG--GGGCTTSCCEEEEEEECSSTTCC
T ss_pred             CCCCCCEEEEcC----CCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCC---CCc--EEEEECCCCCEEEEEEecCCCCE
Confidence            445566799998    778888887777888887754443333322111   111  12233466652222 221 2344


Q ss_pred             EEEEEccC-------------cce---eeee-ccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEE---Eec
Q 019117          110 IRVIDVSN-------------EKL---HKSF-VGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICIL---IFA  168 (346)
Q Consensus       110 i~iwd~~~-------------~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~---~~~  168 (346)
                      +..+.+..             ++.   .... ......+.++.|+| +++++++++. ...|.+|+......+.   ...
T Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~  187 (365)
T d1jofa_         109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVD  187 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeecccee
Confidence            54443321             111   1110 11223478999999 7777766653 4578888765432222   221


Q ss_pred             ccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecC-CCCCCCCccceeceEEEeecccceEEE
Q 019117          169 GAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTD-LPSKFPTKYVQFPVFIASVHSNYVDCN  246 (346)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (346)
                      .. ......+.++|+| +++++ ++...+++|.+|++............... ..........     ....+......+
T Consensus       188 ~~-~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i  260 (365)
T d1jofa_         188 AP-DPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP-----ETGKGLYRADVC  260 (365)
T ss_dssp             CS-STTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT-----TTSSBSEEEEEE
T ss_pred             ec-CCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccc-----ccccccCCccce
Confidence            11 2456789999999 66655 55556889999999764322111111000 0000000000     000112223445


Q ss_pred             Eec--CCEEEEEee-c-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee-cCCcceE-EEEcCCCcEE
Q 019117          247 RWL--GDFILSKSV-D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAA-AIGNREGKIF  316 (346)
Q Consensus       247 ~~~--~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l-~~~~~dg~i~  316 (346)
                      .++  |++|+++.. +     ..|..|++.......   ....+............++++| +|  ++| ++...++.|.
T Consensus       261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~---~~~~~~~~~~~G~~p~~i~~~p~~G--~~l~va~~~s~~v~  335 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVSPCPWSD--EWMAITDDQEGWLE  335 (365)
T ss_dssp             EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEEECTTCT--TEEEEECSSSCEEE
T ss_pred             EECCCCCEEEEEcccCCCccceEEEEEEecCCCcee---eEeEeeEEEcCCCCccEEEecCCCC--CEEEEEeCCCCeEE
Confidence            555  788777644 2     237777765432100   0001111122234567789998 67  445 5556789999


Q ss_pred             EEEcCCCCc
Q 019117          317 VWELQSSPP  325 (346)
Q Consensus       317 iwd~~~~~~  325 (346)
                      +|++.....
T Consensus       336 v~~~~~~~l  344 (365)
T d1jofa_         336 IYRWKDEFL  344 (365)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEeCCcC
Confidence            999876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=8.9e-07  Score=68.14  Aligned_cols=219  Identities=12%  Similarity=0.036  Sum_probs=122.1

Q ss_pred             ccCCCceEEEEEEeecCCCccEEEEEcCCc----EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE-e
Q 019117           30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR----VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-G  104 (346)
Q Consensus        30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~----v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~  104 (346)
                      ..+...+..-+|||    ||+.||......    +.+.+...+.... +..     +........|+  |+|+ .++. .
T Consensus        35 ~~~~~~~~sP~wSP----DGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~s--pdg~-~i~~~~  101 (269)
T d2hqsa1          35 HRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-----FPRHNGAPAFS--PDGS-KLAFAL  101 (269)
T ss_dssp             EEESSCEEEEEECT----TSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC-----CSSCEEEEEEC--TTSS-EEEEEE
T ss_pred             ecCCCceeeeEECC----CCCEEEEEEeeccCcceeeeecccCceeE-Eee-----eecccccceec--CCCC-eeeEee
Confidence            34567788899999    889988765443    5555544443322 221     34445555554  9999 5554 4


Q ss_pred             ecCCeEEEEEccCcc-eeeeeccCCCceEEEEEeCCCCceEEEeeCCCC--EEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117          105 GINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDES--VRLWNVQTGICILIFAGAGGHRNEVLSVD  181 (346)
Q Consensus       105 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  181 (346)
                      ..++...++...... ................+++.....+++...++.  |.+.++..+......    ..........
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~  177 (269)
T d2hqsa1         102 SKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT----WEGSQNQDAD  177 (269)
T ss_dssp             CTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC----CSSSEEEEEE
T ss_pred             ecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee----cccccccccc
Confidence            344443333332222 222222344444556677744555556656665  444555554433332    3566777889


Q ss_pred             ecCCCCcEEEEE-ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117          182 FHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  258 (346)
Q Consensus       182 ~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  258 (346)
                      |+| ++..++.. ...+...+|......                       .......+........|+  |+.|+-.+.
T Consensus       178 ~sp-dg~~~~~~~~~~~~~~i~~~~~~~-----------------------~~~~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         178 VSS-DGKFMVMVSSNGGQQHIAKQDLAT-----------------------GGVQVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             ECT-TSSEEEEEEECSSCEEEEEEETTT-----------------------CCEEECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             ccc-ccceeEEEeecCCceeeeEeeccc-----------------------ccceEeecCccccceEECCCCCEEEEEEc
Confidence            999 66655554 444555555544311                       111222334445666777  787765544


Q ss_pred             ---cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117          259 ---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  299 (346)
Q Consensus       259 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  299 (346)
                         ...|.++++....          ...+....+.+...+|||
T Consensus       234 ~~~~~~l~~~~~dg~~----------~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         234 QGMGSVLNLVSTDGRF----------KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ETTEEEEEEEETTSCC----------EEECCCSSSEEEEEEECC
T ss_pred             CCCCcEEEEEECCCCC----------EEEEeCCCCcEEeEEeCC
Confidence               3468899998764          334444556777888987

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.99  E-value=2.9e-06  Score=67.07  Aligned_cols=228  Identities=7%  Similarity=-0.051  Sum_probs=129.7

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----  106 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----  106 (346)
                      ....+..++|.+    +|+++++-..++ |.-|+...+.....+..     .......+++  +++|+ ++++...    
T Consensus        38 ~~~~lEG~~~D~----~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-----~~~~p~gla~--~~dG~-l~va~~~~~~~  105 (319)
T d2dg1a1          38 KGLQLEGLNFDR----QGQLFLLDVFEGNIFKINPETKEIKRPFVS-----HKANPAAIKI--HKDGR-LFVCYLGDFKS  105 (319)
T ss_dssp             SCCCEEEEEECT----TSCEEEEETTTCEEEEECTTTCCEEEEEEC-----SSSSEEEEEE--CTTSC-EEEEECTTSSS
T ss_pred             CCcCcEeCEECC----CCCEEEEECCCCEEEEEECCCCeEEEEEeC-----CCCCeeEEEE--CCCCC-EEEEecCCCcc
Confidence            344567899987    778877766666 77777655543333321     2233444555  48998 6665432    


Q ss_pred             CCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCeeEEEecccCCCCcceE
Q 019117          107 NGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVL  178 (346)
Q Consensus       107 dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~  178 (346)
                      .+.+...+............  -....+.+++.+ ++.+.++....      +.+..++.. ++.+..+.   ..-...+
T Consensus       106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~---~~~~~pn  180 (319)
T d2dg1a1         106 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPII---QNISVAN  180 (319)
T ss_dssp             CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEE---EEESSEE
T ss_pred             ceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecc-cceeEEEe---eccceee
Confidence            33455555555444333321  123578899999 77766654321      235445543 33333332   1334568


Q ss_pred             EEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117          179 SVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  255 (346)
Q Consensus       179 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  255 (346)
                      .++|+| +++ ++++-+..+.|..|++..........               ................++++  |++.++
T Consensus       181 Gia~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~---------------~~~~~~~~~~~~~PdGl~vD~~G~l~Va  244 (319)
T d2dg1a1         181 GIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPF---------------GATIPYYFTGHEGPDSCCIDSDDNLYVA  244 (319)
T ss_dssp             EEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEE---------------EEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred             eeeecc-ccceEEEecccCCceEEEEEcCCCceeccc---------------cceeeeccCCccceeeeeEcCCCCEEEE
Confidence            899999 655 55666778899999986521100000               00011111111224567776  787777


Q ss_pred             EeecCeEEEEcCCCCCCCCCCcccccccccc------CCCcCeeEEEEeecCC
Q 019117          256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYP------VPECDIWFIKFSCDFH  302 (346)
Q Consensus       256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~  302 (346)
                      ....+.|.+||.. ++         .+..+.      ++...+++++|.++..
T Consensus       245 ~~~~g~V~~~~p~-G~---------~l~~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         245 MYGQGRVLVFNKR-GY---------PIGQILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             EETTTEEEEECTT-SC---------EEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             EcCCCEEEEECCC-Cc---------EEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence            7788999999974 44         233332      2334678999998774

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.94  E-value=3.9e-07  Score=71.97  Aligned_cols=223  Identities=11%  Similarity=0.067  Sum_probs=128.6

Q ss_pred             EEEEEEcCCCCcEEEEee-------cCCeEEEEEccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeCCCCEEEE
Q 019117           88 TVSWACNVDGIPFLVAGG-------INGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKDESVRLW  156 (346)
Q Consensus        88 ~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  156 (346)
                      ..+|.  ++|+ ++++..       .+|+|..||..+++.......    ..+....++|.+ +++.++++...+.|...
T Consensus        22 Gpa~d--~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          22 GPVFD--KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             EEEEC--TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             EeEEe--CCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            34554  8998 555432       246788999887764433221    123457899999 77777777766778888


Q ss_pred             ecCCCeeEEEecccCCC-CcceEEEEecCCCCcEEEEEec---------------CCeEEEEEccccceeeeeceeecCC
Q 019117          157 NVQTGICILIFAGAGGH-RNEVLSVDFHPSDIYRIASCGM---------------DNTVKIWSMKEFWTYVEKSFTWTDL  220 (346)
Q Consensus       157 d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~  220 (346)
                      +...+..........+. -...+.+++.+ ++.+.++-..               .|.|..++...              
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--------------  162 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--------------  162 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--------------
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecC--------------
Confidence            87654432222211111 12367899998 7887776432               12232222221              


Q ss_pred             CCCCCCccceeceEEEeecccceEEEEec--CC-----EEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-CCcCe
Q 019117          221 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-----FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDI  292 (346)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v  292 (346)
                                 ....+...-..-..++|+  ++     +.++-+..+.|..|++......   ........+.. .....
T Consensus       163 -----------~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~---~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         163 -----------QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI---ENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             -----------CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE---EEEEEEEECCCCSSCEE
T ss_pred             -----------ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc---ceeeEEEEccccccccc
Confidence                       111111122223456665  22     4455566788888887643210   00011112222 12335


Q ss_pred             eEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEEEEecCCCC
Q 019117          293 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQSV  345 (346)
Q Consensus       293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg~  345 (346)
                      ..+++..+|  ++.++....+.|.+||.++++.......+ ..+.+++|.||++
T Consensus       229 dGiavD~~G--nlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         229 DGMDFDEDN--NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEEEBTTC--CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             eeeEEecCC--cEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence            678898888  66677667889999999888776666665 3578899999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=2.4e-06  Score=66.12  Aligned_cols=215  Identities=11%  Similarity=0.023  Sum_probs=137.7

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc------CCCceEEEEEeCCCCceEEE-eeCCCCEEEEecC
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG------HGDSINEIRTQPLKPSLVVS-ASKDESVRLWNVQ  159 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~  159 (346)
                      ..+++.  ++|+ ++++-..++.|++||.+ ++.+..+..      .......+++.+..+..+++ .+.++.|..++. 
T Consensus        26 ~gvavd--~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          26 SGVAVN--AQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             EEEEEC--TTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             cEEEEc--CCCC-EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            445554  8888 77777778899999954 666655532      12234566666634444444 344567777775 


Q ss_pred             CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE--e
Q 019117          160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--S  237 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  237 (346)
                      .++....+..  ........+++.+ ++.++++....+.+.+++....                        .+..+  .
T Consensus       101 ~g~~~~~~~~--~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~------------------------~~~~~g~~  153 (279)
T d1q7fa_         101 YGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN------------------------VLHKFGCS  153 (279)
T ss_dssp             TSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC------------------------EEEEEECT
T ss_pred             cccceeecCC--Ccccccceecccc-CCcEEEEeeccceeeEeccCCc------------------------eeeccccc
Confidence            4676666642  3456678999997 7888887777778888876541                        11111  2


Q ss_pred             ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc--cCCCcCeeEEEEeecCCcceEEEEc-CC
Q 019117          238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGN-RE  312 (346)
Q Consensus       238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~-~d  312 (346)
                      .+......++++  ++.+++....+.|++||....          .+..+  .+.......|++.+++  +++++-. .+
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~----------~~~~~g~~g~~~~P~giavD~~G--~i~Vad~~~~  221 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--EILIADNHNN  221 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC--CEEEEECSSS
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecCCc----------eeeeecccccccCCcccccccCC--eEEEEECCCC
Confidence            234455666666  667777778899999997643          22232  2234457889999999  5666644 45


Q ss_pred             CcEEEEEcCCCCcceeeeee---eeEEEEEecCCCCC
Q 019117          313 GKIFVWELQSSPPVLIARLI---CFSLHVKYNPQSVY  346 (346)
Q Consensus       313 g~i~iwd~~~~~~~~~~~~~---~~~~~~~~spdg~~  346 (346)
                      +.|.+|+. +++.+..+...   ..+..+++.|||.+
T Consensus       222 ~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         222 FNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             CEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             cEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            57999984 56655444332   23678999999863

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=2.9e-06  Score=67.02  Aligned_cols=224  Identities=12%  Similarity=0.003  Sum_probs=134.4

Q ss_pred             EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC----CCCEEEEecCCCe
Q 019117           87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK----DESVRLWNVQTGI  162 (346)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~  162 (346)
                      ..++|.  ++|+ +.++-...+.|..|+.++++....+.........+++.+ ++.++++...    .+.+...+.....
T Consensus        43 EG~~~D--~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          43 EGLNFD--RQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             EEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             EeCEEC--CCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence            345664  8888 777777889999999887776666655666788999999 7777776533    2334555555444


Q ss_pred             eEEEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117          163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  236 (346)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
                      ........ .....+..+++.+ ++++.++....      +.+..++...                        ..+..+
T Consensus       119 ~~~~~~~~-~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg------------------------~~~~~~  172 (319)
T d2dg1a1         119 LQDIIEDL-STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF------------------------RTVTPI  172 (319)
T ss_dssp             CEEEECSS-SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS------------------------CCEEEE
T ss_pred             eeeeccCC-CcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc------------------------ceeEEE
Confidence            43333211 1234578899998 78866664321      2233333322                        111222


Q ss_pred             eecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117          237 SVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  313 (346)
Q Consensus       237 ~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  313 (346)
                      ...-.....++|+  ++.| ++-+..+.|..|++................... .......+++..+|  ++.++....+
T Consensus       173 ~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~-~~~~PdGl~vD~~G--~l~Va~~~~g  249 (319)
T d2dg1a1         173 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDD--NLYVAMYGQG  249 (319)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTC--CEEEEEETTT
T ss_pred             eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccC-CccceeeeeEcCCC--CEEEEEcCCC
Confidence            2222334668887  5554 555668899999986542110000000011111 12235678999888  6777777889


Q ss_pred             cEEEEEcCCCCcceeeeeee-------eEEEEEecCCC
Q 019117          314 KIFVWELQSSPPVLIARLIC-------FSLHVKYNPQS  344 (346)
Q Consensus       314 ~i~iwd~~~~~~~~~~~~~~-------~~~~~~~spdg  344 (346)
                      .|.+||- +++.+..+.++.       .+.+++|.|++
T Consensus       250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            9999995 677776666553       35688888765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=8.5e-07  Score=71.63  Aligned_cols=165  Identities=10%  Similarity=0.002  Sum_probs=102.4

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCC--cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV  112 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~--~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  112 (346)
                      .+.++.|+|    +|++++++..+  .|.+|+......+.................+.|.  |+++.+.++...+++|.+
T Consensus       146 h~h~v~~sP----dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~--pdg~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         146 GIHGMVFDP----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH--PTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             CEEEEEECT----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC--TTSSEEEEEETTTTEEEE
T ss_pred             cceEEEECC----CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC--CCCceEEEeccCCCEEEE
Confidence            478999999    78877777643  4888887655544444433333344555556555  999934455556899999


Q ss_pred             EEccCcceeee-----ec--------------cCCCceEEEEEeCCCCceEEEeeC-C-----CCEEEEecCCCeeEE--
Q 019117          113 IDVSNEKLHKS-----FV--------------GHGDSINEIRTQPLKPSLVVSASK-D-----ESVRLWNVQTGICIL--  165 (346)
Q Consensus       113 wd~~~~~~~~~-----~~--------------~~~~~v~~~~~~~~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~--  165 (346)
                      |+++.++....     +.              .+......+.++| ++++|+++.. +     ..|..|++.....+.  
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~  298 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ  298 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeE
Confidence            99876543211     10              1122456889999 7887776642 2     237777775432222  


Q ss_pred             -EecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccc
Q 019117          166 -IFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKE  206 (346)
Q Consensus       166 -~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~  206 (346)
                       .+..........++++++|.++++|+++ ..++.|.+|+++.
T Consensus       299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence             1111112345678899998556755555 5678999998876

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.8e-08  Score=79.78  Aligned_cols=255  Identities=8%  Similarity=-0.021  Sum_probs=140.5

Q ss_pred             EEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee---------cCCeE
Q 019117           40 VFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---------INGII  110 (346)
Q Consensus        40 ~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---------~dg~i  110 (346)
                      .|.+    ++.++.....+.|.+||..+++....+.....  ....+  ..+.++||++ +++...         ..+.+
T Consensus        23 ~W~~----~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~--~~~~~--~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~   93 (465)
T d1xfda1          23 KWIS----DTEFIYREQKGTVRLWNVETNTSTVLIEGKKI--ESLRA--IRYEISPDRE-YALFSYNVEPIYQHSYTGYY   93 (465)
T ss_dssp             CBSS----SSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT--TTTTC--SEEEECTTSS-EEEEEESCCCCSSSCCCSEE
T ss_pred             EEeC----CCcEEEEeCCCcEEEEECCCCCEEEEEcCccc--ccccc--ceeEECCCCC-eEEEEEcccceeEeeccccE
Confidence            4666    45666554444599999988876444432111  11122  3455679999 666653         35788


Q ss_pred             EEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc------------
Q 019117          111 RVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE------------  176 (346)
Q Consensus       111 ~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------  176 (346)
                      .++|+.+++.....  ......+....|+| +++.+|-.. ++.|.+.+...+..++....  +....            
T Consensus        94 ~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~--g~~~~i~nG~~d~vyee  169 (465)
T d1xfda1          94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVST--GKEGVIYNGLSDWLYEE  169 (465)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECC--CBTTTEEEEECCHHHHH
T ss_pred             EEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecc--cCcceeeccccchhhhh
Confidence            99999988754332  22344566789999 777777765 56788888877766554432  11111            


Q ss_pred             -----eEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117          177 -----VLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  249 (346)
Q Consensus       177 -----v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  249 (346)
                           -.++.|+| +++.|+.... +..|..+.+......                            ....+..+.+- 
T Consensus       170 e~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~----------------------------~~p~~~~~~Yp~  220 (465)
T d1xfda1         170 EILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGS----------------------------IYPTVKPYHYPK  220 (465)
T ss_dssp             TTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSS----------------------------SSCCCEEEECCB
T ss_pred             hhccccceEEECC-CCCeEEEEEecccccceeeccccccc----------------------------ccceeeeeeccc
Confidence                 24678999 7777776543 444555554331000                            00001111111 


Q ss_pred             -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc----CCCcEEEEEcCCCC
Q 019117          250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN----REGKIFVWELQSSP  324 (346)
Q Consensus       250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~----~dg~i~iwd~~~~~  324 (346)
                       |.--    ....+.++|+.++.......   ..........-+..+.|++++  ++++...    ....|.++|..+++
T Consensus       221 ~G~~n----p~~~l~v~d~~~~~~~~~~~---~~~~~~~~~~y~~~~~W~~d~--~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         221 AGSEN----PSISLHVIGLNGPTHDLEMM---PPDDPRMREYYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             TTSCC----CEEEEEEEESSSSCCCEECC---CCCCGGGSSEEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             cCCCC----CceeEEEEecCCCcEEEEEe---ccCcCccccceeeeeEEcCCC--eEEEEEEccccccceEEEEcCCCCc
Confidence             1110    11247778876654211000   011111122346778999998  4444432    22368889999988


Q ss_pred             cceeeeeeee------EEEEEecCCCC
Q 019117          325 PVLIARLICF------SLHVKYNPQSV  345 (346)
Q Consensus       325 ~~~~~~~~~~------~~~~~~spdg~  345 (346)
                      ..........      .....|+|||+
T Consensus       292 ~~~~~~e~~~~wv~~~~~~p~~~~dg~  318 (465)
T d1xfda1         292 CTKKHEDESEAWLHRQNEEPVFSKDGR  318 (465)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             EEEEEEEcCCceEeccCCceeEccCCC
Confidence            6554432211      12367888886

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.73  E-value=2.3e-05  Score=60.92  Aligned_cols=227  Identities=12%  Similarity=0.008  Sum_probs=134.7

Q ss_pred             EEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc
Q 019117           38 AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS  116 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  116 (346)
                      +..|.+   +++.++.+--.++ |.-||..++.. ..+.      ....+.++++.  ++|. +++ ++.+ .+.++|..
T Consensus        22 gp~wd~---~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~------~~~~~~~i~~~--~dg~-l~v-a~~~-gl~~~d~~   86 (295)
T d2ghsa1          22 GPTFDP---ASGTAWWFNILERELHELHLASGRK-TVHA------LPFMGSALAKI--SDSK-QLI-ASDD-GLFLRDTA   86 (295)
T ss_dssp             EEEEET---TTTEEEEEEGGGTEEEEEETTTTEE-EEEE------CSSCEEEEEEE--ETTE-EEE-EETT-EEEEEETT
T ss_pred             CCeEEC---CCCEEEEEECCCCEEEEEECCCCeE-EEEE------CCCCcEEEEEe--cCCC-EEE-EEeC-ccEEeecc
Confidence            455766   2455555543444 88888776643 2222      23345556655  7776 554 4444 58899999


Q ss_pred             Ccceeeeecc----CCCceEEEEEeCCCCceEEEeeC----CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          117 NEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASK----DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       117 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +++.......    ....++++.+.| ++.+.++...    .+.-.+|.+..++......    .-...+.++|++++..
T Consensus        87 tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~----~~~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1          87 TGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA----DISIPNSICFSPDGTT  161 (295)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE----EESSEEEEEECTTSCE
T ss_pred             cceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEee----ccCCcceeeecCCCce
Confidence            8875433221    123578999999 7776665432    2345677777776555543    3345678999994444


Q ss_pred             EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117          189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  266 (346)
Q Consensus       189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  266 (346)
                      ++++-+..+.|..|++.........               .................++++  |++.++.-..+.|..||
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~---------------~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTG---------------KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSS---------------CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             EEEeecccceeeEeeeccccccccc---------------ceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            6667677889999987641110000               000111112223445667776  66666655678899999


Q ss_pred             CCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEc
Q 019117          267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGN  310 (346)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~  310 (346)
                      .. ++         .+..+..+...+++++|- +|.+ .+++|..
T Consensus       227 p~-G~---------~~~~i~lP~~~~T~~~FGG~d~~-~LyvTta  260 (295)
T d2ghsa1         227 TD-GN---------HIARYEVPGKQTTCPAFIGPDAS-RLLVTSA  260 (295)
T ss_dssp             TT-CC---------EEEEEECSCSBEEEEEEESTTSC-EEEEEEB
T ss_pred             CC-Cc---------EeeEecCCCCceEEEEEeCCCCC-EEEEEEC
Confidence            75 44         566666666789999997 5654 3555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.61  E-value=4.1e-05  Score=58.74  Aligned_cols=94  Identities=12%  Similarity=0.037  Sum_probs=58.6

Q ss_pred             EEEeecCCC--ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-cC-----CeEE
Q 019117           40 VFNFIDSRY--FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-IN-----GIIR  111 (346)
Q Consensus        40 ~~~p~~~~~--~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~d-----g~i~  111 (346)
                      ..+|    +  |+.+|-.+.+.|.+.|+..++..+ +..     ........+|  +|||+ .||-.. .+     ..|.
T Consensus         5 ~~sP----di~G~~v~f~~~~dl~~~d~~~g~~~~-Lt~-----~~~~~~~p~~--SPDG~-~iaf~~~~~~~~~~~~i~   71 (281)
T d1k32a2           5 LLNP----DIHGDRIIFVCCDDLWEHDLKSGSTRK-IVS-----NLGVINNARF--FPDGR-KIAIRVMRGSSLNTADLY   71 (281)
T ss_dssp             CEEE----EEETTEEEEEETTEEEEEETTTCCEEE-EEC-----SSSEEEEEEE--CTTSS-EEEEEEEESTTCCEEEEE
T ss_pred             ccCC----CCCCCEEEEEeCCcEEEEECCCCCEEE-Eec-----CCCcccCEEE--CCCCC-EEEEEEeeCCCCCceEEE
Confidence            3567    5  788888777778888988776543 321     3334444555  49999 666443 22     2477


Q ss_pred             EEEccCcceeeeec------cCCCceEEEEEeCCCCceEEEe
Q 019117          112 VIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSA  147 (346)
Q Consensus       112 iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~  147 (346)
                      +++..+++..+...      ..........|+| +++.|+..
T Consensus        72 ~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          72 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             EEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             EEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEE
Confidence            77777776544321      1223456888999 77777654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=0.00024  Score=58.86  Aligned_cols=103  Identities=9%  Similarity=-0.059  Sum_probs=61.6

Q ss_pred             CceEEEEEEeecCCCccEEEEEcC---------Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117           34 RPLYAVVFNFIDSRYFNVFATVGG---------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA  103 (346)
Q Consensus        34 ~~v~~~~~~p~~~~~~~~la~~~~---------~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  103 (346)
                      -.+....|||    |++.++...+         .+ +.++|+.++........   ......+....|  +|||+ .||-
T Consensus        61 ~~~~~~~~Sp----D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~---~~~~~~l~~~~w--SPDG~-~iaf  130 (465)
T d1xfda1          61 LRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP---EVSNAKLQYAGW--GPKGQ-QLIF  130 (465)
T ss_dssp             TTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT---TCCSCCCSBCCB--CSSTT-CEEE
T ss_pred             cccceeEECC----CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc---cCCccccceeee--ccCCc-eEEE
Confidence            3566788999    7777666532         23 88899887765332211   111222322344  49999 6666


Q ss_pred             eecCCeEEEEEccCcceeeeec-cCCC-----------------ceEEEEEeCCCCceEEEee
Q 019117          104 GGINGIIRVIDVSNEKLHKSFV-GHGD-----------------SINEIRTQPLKPSLVVSAS  148 (346)
Q Consensus       104 ~~~dg~i~iwd~~~~~~~~~~~-~~~~-----------------~v~~~~~~~~~~~~l~s~~  148 (346)
                      .. ++.|.+.+..++..++... +..+                 .-..+.|+| +++.|+...
T Consensus       131 v~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~  191 (465)
T d1xfda1         131 IF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAA  191 (465)
T ss_dssp             EE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEE
T ss_pred             Ee-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEE
Confidence            55 6778888887766544332 1111                 124778999 778777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.34  E-value=0.00029  Score=54.51  Aligned_cols=182  Identities=9%  Similarity=-0.018  Sum_probs=113.1

Q ss_pred             CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----CC
Q 019117           33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NG  108 (346)
Q Consensus        33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg  108 (346)
                      ...+.++++.+    ++.+++++ .+++.++|..+++...... .........+..+.+  .++|. +.++...    .+
T Consensus        58 ~~~~~~i~~~~----dg~l~va~-~~gl~~~d~~tg~~~~l~~-~~~~~~~~~~nd~~v--d~~G~-iw~~~~~~~~~~~  128 (295)
T d2ghsa1          58 PFMGSALAKIS----DSKQLIAS-DDGLFLRDTATGVLTLHAE-LESDLPGNRSNDGRM--HPSGA-LWIGTMGRKAETG  128 (295)
T ss_dssp             SSCEEEEEEEE----TTEEEEEE-TTEEEEEETTTCCEEEEEC-SSTTCTTEEEEEEEE--CTTSC-EEEEEEETTCCTT
T ss_pred             CCCcEEEEEec----CCCEEEEE-eCccEEeecccceeeEEee-eecCCCcccceeeEE--CCCCC-EEEEecccccccc
Confidence            45678888877    66676654 6789999988776543322 222222334555554  49998 5554432    23


Q ss_pred             eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-----eEEEecccCCCCcceEEEEec
Q 019117          109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----CILIFAGAGGHRNEVLSVDFH  183 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~  183 (346)
                      .-.+|.+..++....... -...+.++|++++..++++-+..+.|..+++....     ....+....+..+....+++.
T Consensus       129 ~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD  207 (295)
T d2ghsa1         129 AGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD  207 (295)
T ss_dssp             CEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred             ceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEc
Confidence            456777777765544443 33467899999444456676778889888874211     111111111345678899999


Q ss_pred             CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117          184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  249 (346)
Q Consensus       184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  249 (346)
                      . ++++.++.-..+.|..||...                        ..+..+..-...+++++|-
T Consensus       208 ~-~GnlWva~~~~g~V~~~dp~G------------------------~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         208 A-EGHIWNARWGEGAVDRYDTDG------------------------NHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             T-TSCEEEEEETTTEEEEECTTC------------------------CEEEEEECSCSBEEEEEEE
T ss_pred             C-CCCEEeeeeCCCceEEecCCC------------------------cEeeEecCCCCceEEEEEe
Confidence            7 888777777778999999654                        2333444434568999996

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=0.00028  Score=53.45  Aligned_cols=239  Identities=6%  Similarity=-0.081  Sum_probs=131.5

Q ss_pred             cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117           50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD  129 (346)
Q Consensus        50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  129 (346)
                      .+|+-+..+.|+-.++....................+.  ++.++..++..+.+-..++.|...+++.......+.....
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~--~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~   79 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVII--GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEE--EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCCCcEE--EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence            45666666667777765332111000000000222333  3444466652444445678899888876655544544445


Q ss_pred             ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe--EEEEEcccc
Q 019117          130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT--VKIWSMKEF  207 (346)
Q Consensus       130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~  207 (346)
                      .+.++++...++.+.++-...+.|.+.++........+.   .....+..++++|..+.++.+-...+.  |..-++...
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec---ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence            788999987455555566677899999987554433333   234578899999955555555433233  433344331


Q ss_pred             ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117          208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQK  284 (346)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  284 (346)
                      .                       ........-.....++++  ++.| .+-...+.|...+++....      ...+  
T Consensus       157 ~-----------------------~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~------~~v~--  205 (263)
T d1npea_         157 N-----------------------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------RKVL--  205 (263)
T ss_dssp             C-----------------------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE------EEEE--
T ss_pred             C-----------------------ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe------EEEE--
Confidence            1                       111111122344677776  5555 4445678899898876541      0111  


Q ss_pred             ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                       .+. ....+|++. ++  .+..+-...+.|...|..+++.....
T Consensus       206 -~~~-~~P~~lav~-~~--~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         206 -EGL-QYPFAVTSY-GK--NLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             -ECC-CSEEEEEEE-TT--EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -CCC-CCcEEEEEE-CC--EEEEEECCCCEEEEEECCCCccceEE
Confidence             111 223566665 33  45566667788999999888654433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.93  E-value=0.0021  Score=54.49  Aligned_cols=42  Identities=5%  Similarity=0.029  Sum_probs=32.9

Q ss_pred             ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEE--EEecCCCC
Q 019117          304 NAAAIGNREGKIFVWELQSSPPVLIARLICFSLH--VKYNPQSV  345 (346)
Q Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~spdg~  345 (346)
                      .++.+|+.||.++-+|.++|+.+-.+++...+..  +.|..||+
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            4777899999999999999998888887765443  55655653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=0.0021  Score=48.52  Aligned_cols=206  Identities=9%  Similarity=-0.027  Sum_probs=116.4

Q ss_pred             cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      +..+...+.+|+|.+   ..+.++.+-..++ |...++........+..     .-..+..+++.  .-+..+..+-...
T Consensus        31 ~~~~~~~~~~ld~D~---~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-----~~~~p~~iAvD--~~~~~lY~~d~~~  100 (263)
T d1npea_          31 LHIPAKVIIGLAFDC---VDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-----DLGSPEGIALD--HLGRTIFWTDSQL  100 (263)
T ss_dssp             EEEEEEEEEEEEEET---TTTEEEEEETTTTEEEEEESSSCCCEEEECT-----TCCCEEEEEEE--TTTTEEEEEETTT
T ss_pred             cccCCCcEEEEEEEe---CCCEEEEEECCCCeEEEEEcccCCcEEEEEe-----ccccccEEEEe--ccCCeEEEeccCC
Confidence            334445578899987   2334554444444 77777655443333221     12345556654  4444245555667


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEE--ecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW--NVQTGICILIFAGAGGHRNEVLSVDFHPS  185 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  185 (346)
                      +.|.+.+++.......+.........+++.|..+.++.+-...+..+|+  ++..........   ..-....++++++.
T Consensus       101 ~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~---~~~~~P~glaiD~~  177 (263)
T d1npea_         101 DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---DNLGLPNGLTFDAF  177 (263)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---TTCSCEEEEEEETT
T ss_pred             CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee---ecccccceEEEeec
Confidence            8999999876554333333346788999999555455453332333444  554333222222   23356789999874


Q ss_pred             CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEE-eecCeEEE
Q 019117          186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK-SVDNEIVL  264 (346)
Q Consensus       186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~d~~i~i  264 (346)
                      ++.+..+-...+.|...++.....                       ...... ......+++.++.|... ...+.|..
T Consensus       178 ~~~lYw~d~~~~~I~~~~~~g~~~-----------------------~~v~~~-~~~P~~lav~~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         178 SSQLCWVDAGTHRAECLNPAQPGR-----------------------RKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTEEEE-----------------------EEEEEC-CCSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCe-----------------------EEEECC-CCCcEEEEEECCEEEEEECCCCEEEE
Confidence            455555556678899988876221                       111111 12234676666655444 45688888


Q ss_pred             EcCCCCC
Q 019117          265 WEPKMKE  271 (346)
Q Consensus       265 wd~~~~~  271 (346)
                      .|..+++
T Consensus       234 ~~~~~g~  240 (263)
T d1npea_         234 MDLAISK  240 (263)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            8887765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.88  E-value=0.0035  Score=49.80  Aligned_cols=264  Identities=9%  Similarity=0.030  Sum_probs=140.5

Q ss_pred             EEEEcCCc-EEEEEeccCceeeeEeeeecCCC----------------------------------ccceEEEEEEEcC-
Q 019117           52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDK----------------------------------EESFYTVSWACNV-   95 (346)
Q Consensus        52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~----------------------------------~~~v~~~~~~~~~-   95 (346)
                      |.+|+..+ |+|+-+-+++.++.+..|....-                                  .+....-.+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            45555555 99999988888888877653211                                  0111222344433 


Q ss_pred             --CCCcEEEEeecCCeEEEEEccCcceeeeecc-CCCceEEEEEeCC-CCceEEEeeCCC------------------CE
Q 019117           96 --DGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPL-KPSLVVSASKDE------------------SV  153 (346)
Q Consensus        96 --~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~l~s~~~d~------------------~i  153 (346)
                        ||+.+++.-..+..|.+-|+++.+..+.+.. ....+..+...+. +..+++..+++.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              7883444445788999999999887654432 3445666666431 445666665532                  26


Q ss_pred             EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC---------------eEEEEEccccceeeeec-ee-
Q 019117          154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---------------TVKIWSMKEFWTYVEKS-FT-  216 (346)
Q Consensus       154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---------------~i~iwd~~~~~~~~~~~-~~-  216 (346)
                      .++|..+.+....+.    -.+....+++++ +++++++.+.+.               .+.+++........... .. 
T Consensus       176 t~ID~~tm~V~~QV~----V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e  250 (459)
T d1fwxa2         176 TAVDADKWEVAWQVL----VSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  250 (459)
T ss_dssp             EEEETTTTEEEEEEE----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             EEEecCCceEEEEee----eCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence            678998888877776    345667899998 777777765331               35555554421111000 00 


Q ss_pred             ecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCCCCC--CCccccccccccCCCcC
Q 019117          217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSP--GEGTADILQKYPVPECD  291 (346)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~  291 (346)
                      ....+...........+..+-.-......+..+  |+++++++. +.++.++|++.-....  .......+.......-.
T Consensus       251 ingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         251 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             ETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             eCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence            000000000000011111111112223344555  777766654 8999999987432100  00000111111111223


Q ss_pred             eeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117          292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQS  322 (346)
Q Consensus       292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~  322 (346)
                      ....+|...|  ....+---|..|.-|++..
T Consensus       331 PLht~fd~~g--~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRG--NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTS--EEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCc--eEEEEeeccceEEEEecch
Confidence            4455676665  5667777899999999853

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.0019  Score=48.95  Aligned_cols=95  Identities=21%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             cCC--CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC-----CEEEEecCCCeeEE
Q 019117           94 NVD--GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE-----SVRLWNVQTGICIL  165 (346)
Q Consensus        94 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~-----~i~iwd~~~~~~~~  165 (346)
                      +|+  |+ .++-.+ +|.|.+.|+.+++.. .+..+.+.+...+|+| +++.|+... .++     .|.+++...++...
T Consensus         7 sPdi~G~-~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           7 NPDIHGD-RIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEETT-EEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             CCCCCCC-EEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            377  88 665544 567888899888765 4555677889999999 777776543 222     37777877776554


Q ss_pred             EecccC---CCCcceEEEEecCCCCcEEEEE
Q 019117          166 IFAGAG---GHRNEVLSVDFHPSDIYRIASC  193 (346)
Q Consensus       166 ~~~~~~---~~~~~v~~~~~~~~~~~~l~s~  193 (346)
                      ......   ..........|+| +++.++..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             eeecCCCccCccccccccccCC-CCCEEEEE
Confidence            322100   1223456788999 77766654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.0051  Score=46.38  Aligned_cols=235  Identities=6%  Similarity=-0.066  Sum_probs=130.9

Q ss_pred             EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----eeeeecc
Q 019117           51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVG  126 (346)
Q Consensus        51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~  126 (346)
                      +|+.+....|+-.++.+.+....+.      ....+..+  .+++..+.+..+=...+.|.-.+++...    ....+..
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~------~~~~~~~i--d~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVAL--DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC------SCSSEEEE--EEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCCcceeeeC------CCCceEEE--EEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC
Confidence            4555656668888877654433322      22334344  4446666244443456677766664321    1222233


Q ss_pred             CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcc
Q 019117          127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMK  205 (346)
Q Consensus       127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~  205 (346)
                      ....+..+++.+.++++.++-...+.|.+.++........+.   ........++++|..+.++.+.. ..+.|...++.
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~---~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc---CCCCCcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence            334567888877456666666677889999998655444444   34567899999985555555532 33456666665


Q ss_pred             ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117          206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADIL  282 (346)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  282 (346)
                      ...                       ........-.....++++  ++.| .+-...+.|...++.....       ..+
T Consensus       152 Gs~-----------------------~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-------~~~  201 (266)
T d1ijqa1         152 GVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTI  201 (266)
T ss_dssp             SCC-----------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE
T ss_pred             CCc-----------------------eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-------EEE
Confidence            411                       111111222345667666  4544 4445578899889876531       112


Q ss_pred             ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117          283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  329 (346)
Q Consensus       283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (346)
                      ...........++++.. +  .+..+-..++.|+..+..+++.....
T Consensus       202 ~~~~~~~~~p~~lav~~-~--~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         202 LEDEKRLAHPFSLAVFE-D--KVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EECTTTTSSEEEEEEET-T--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EeCCCcccccEEEEEEC-C--EEEEEECCCCeEEEEECCCCcceEEE
Confidence            11122222345666663 2  45666667889988898887755433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.0041  Score=49.45  Aligned_cols=198  Identities=11%  Similarity=0.074  Sum_probs=110.6

Q ss_pred             CccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------------------
Q 019117           48 YFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------------------  107 (346)
Q Consensus        48 ~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------------------  107 (346)
                      ||++|.......  |-+.|+.+-+..+.+..-    ....+..++....|+-. |++..+.+                  
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iP----n~~~~HG~r~~~~p~T~-YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP----NAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS----SCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecC----CCCCCceeecccCCCeE-EEEccCccccccCCCCccccchhhcc
Confidence            678887776544  999999887776655421    33344545554445555 77766553                  


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC------------------------------------
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------------------------------------  151 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------------------------------------  151 (346)
                      +.+.+.|.++.+....+.- .+....+.+++ +++++++.+.+.                                    
T Consensus       173 ~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e  250 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  250 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             eEEEEEecCCceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence            2367788888877666653 34567889999 677777665431                                    


Q ss_pred             --CEEEEecCCC---eeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117          152 --SVRLWNVQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  225 (346)
Q Consensus       152 --~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (346)
                        .+.+-|.+..   ..+..+.    -......+.++| ++++++ ++..+.++.++|++...........         
T Consensus       251 ingV~VVD~~~~~~~~v~~yIP----VpKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~---------  316 (459)
T d1fwxa2         251 LNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD---------  316 (459)
T ss_dssp             ETTEEEEECSGG--CSSEEEEE----EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC----------
T ss_pred             eCCceeecccccCCcceeEEEe----cCCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCC---------
Confidence              1233333211   1111121    223455789999 555554 5556889999999875433211100         


Q ss_pred             CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117          226 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM  269 (346)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  269 (346)
                         ....+.......-.-..-+|+  |+-..+---|..|.-|++..
T Consensus       317 ---~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         317 ---PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             ---GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ---ccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence               001111111111222334555  43333444699999999854

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.49  E-value=0.023  Score=48.23  Aligned_cols=166  Identities=10%  Similarity=0.054  Sum_probs=93.3

Q ss_pred             EEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeE
Q 019117           38 AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGII  110 (346)
Q Consensus        38 ~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i  110 (346)
                      .+++.+.+...+.++..+..|+ +.-.|..+++....+...... ....++.--..  -++  .++.+..      .|.|
T Consensus       110 Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~-~~~~~t~~P~v--~~~--~vivg~~~~e~~~~G~v  184 (596)
T d1w6sa_         110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYV--VKD--KVIIGSSGAELGVRGYL  184 (596)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEE--ETT--EEEECCBCGGGTCCCEE
T ss_pred             eeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccc-cccccccCCcE--ECC--eEEEeeccccccccCce
Confidence            4566553333445677777666 888899999887766431110 11111110011  133  4555543      4899


Q ss_pred             EEEEccCcceeeeeccCC-------------------------------------C-ceEEEEEeCCCCceEEEeeC---
Q 019117          111 RVIDVSNEKLHKSFVGHG-------------------------------------D-SINEIRTQPLKPSLVVSASK---  149 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~-------------------------------------~-~v~~~~~~~~~~~~l~s~~~---  149 (346)
                      +-+|+.+|+.+..+....                                     . .-..+++.+ ...++..+..   
T Consensus       185 ~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~  263 (596)
T d1w6sa_         185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPA  263 (596)
T ss_dssp             EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCS
T ss_pred             EEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeeccccccc
Confidence            999999999887653210                                     0 012344555 4445444432   


Q ss_pred             -------------CCCEEEEecCCCeeEEEecccCCCC-------cceEEEEe-cCCC--CcEEEEEecCCeEEEEEccc
Q 019117          150 -------------DESVRLWNVQTGICILIFAGAGGHR-------NEVLSVDF-HPSD--IYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       150 -------------d~~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~-~~~~--~~~l~s~~~d~~i~iwd~~~  206 (346)
                                   ...|.-.|+++++.+..++... |.       ..+.-+.. ..++  ...++....+|.+.++|..+
T Consensus       264 p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~-~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~t  342 (596)
T d1w6sa_         264 PWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP-HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (596)
T ss_dssp             CSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST-TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccee-ccccCCccccceeeeeccccccccccceeccccccceeeecCCC
Confidence                         2347778999999988776421 21       11222221 1111  24677888899999999988


Q ss_pred             ccee
Q 019117          207 FWTY  210 (346)
Q Consensus       207 ~~~~  210 (346)
                      ++..
T Consensus       343 G~~i  346 (596)
T d1w6sa_         343 GALV  346 (596)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            6654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.46  E-value=0.0085  Score=50.54  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCc-----cce-EEEEEEEcCCCCcEEEEeecCCeEEEEEccCccee
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKE-----ESF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH  121 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-----~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  121 (346)
                      ++.++++...+.|.-.|..+|+.+..+.........     ..+ ..++..    +. .++.+..++.|.-.|..+++.+
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~~~g~l~Alda~tG~~~  140 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW----GD-KVYVGTLDGRLIALDAKTGKAI  140 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE----BT-EEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee----CC-eEEEEeCCCEEEEEECCCCcEE
Confidence            456666666555888899999887765321110000     000 011111    22 5778888999999999999887


Q ss_pred             eeeccCCCc-eEEEEEeCC-CCceEEEeeC------CCCEEEEecCCCeeEEEec
Q 019117          122 KSFVGHGDS-INEIRTQPL-KPSLVVSASK------DESVRLWNVQTGICILIFA  168 (346)
Q Consensus       122 ~~~~~~~~~-v~~~~~~~~-~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~  168 (346)
                      ......... -..+.-.|. ....++.+..      .|.|.-+|.++|+.+..+.
T Consensus       141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            766432110 000000000 0123333321      2457777777777766654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=0.015  Score=43.75  Aligned_cols=232  Identities=9%  Similarity=0.061  Sum_probs=136.7

Q ss_pred             EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117           60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL  139 (346)
Q Consensus        60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  139 (346)
                      |.|.|+........-..  .  .      =+.-.+|..+ .||.-+ ..++.++|+++.+.++.+. ....|.--.|-. 
T Consensus        47 VvIidl~n~~~~~Rrpi--~--A------dsAIMhP~~~-IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis-  112 (327)
T d1utca2          47 VVIIDMNDPSNPIRRPI--S--A------DSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWIS-  112 (327)
T ss_dssp             EEEEETTSTTSCEEEEC--C--C------SEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESS-
T ss_pred             EEEEECCCCCcceeccc--c--h------hhhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecC-
Confidence            99999876654322111  0  0      1223457776 666655 6789999999999888777 445777788875 


Q ss_pred             CCceEEEeeCCCCEEEEecCC-CeeEEEecccC-CCCcceEEEEecCCCCcEEEEEe-------cCCeEEEEEcccccee
Q 019117          140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY  210 (346)
Q Consensus       140 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~  210 (346)
                       .+.|+-... ..|+-|+++. ..+.+.+.... -....|-.-..++ +.++++..+       -.|.+.+|..+..   
T Consensus       113 -~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~---  186 (327)
T d1utca2         113 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK---  186 (327)
T ss_dssp             -SSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT---
T ss_pred             -CCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC---
Confidence             455555543 5799999953 24666665311 1134677777787 666655432       2367788887762   


Q ss_pred             eeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC-----EEEEE---eecCeEEEEcCCCCCCC-CCCccc--
Q 019117          211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSK---SVDNEIVLWEPKMKEQS-PGEGTA--  279 (346)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~---~~d~~i~iwd~~~~~~~-~~~~~~--  279 (346)
                                           ....+++|...-..+...|+     +++-+   ...+.+.|-++...... ......  
T Consensus       187 ---------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~v  245 (327)
T d1utca2         187 ---------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  245 (327)
T ss_dssp             ---------------------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEE
T ss_pred             ---------------------cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeE
Confidence                                 23344555544444433321     22222   22368899988764321 111110  


Q ss_pred             cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee
Q 019117          280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF  334 (346)
Q Consensus       280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  334 (346)
                      +....-....+-.-++..|+--  .++..-+.-|.|++||++++..+...+....
T Consensus       246 di~fppea~~DFPvamqvs~ky--giiyviTK~G~i~lyDleTgt~i~~nRIs~~  298 (327)
T d1utca2         246 DVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISGE  298 (327)
T ss_dssp             ECCCCTTCTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEECCccccCCcEEEEEeeccC--CEEEEEecCcEEEEEEcccccEEEEeecCCC
Confidence            0111111123344566666654  6888888999999999999998877766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.017  Score=43.44  Aligned_cols=210  Identities=7%  Similarity=-0.047  Sum_probs=112.5

Q ss_pred             CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117           32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII  110 (346)
Q Consensus        32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  110 (346)
                      ....+.+|+|.+   ..+.++.+-...+ |.-.++............... ....+..+++.  +.+.++..+-...+.|
T Consensus        28 ~~~~~~~id~d~---~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~p~glAvD--~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          28 NLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVD--WIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             SCSSEEEEEEET---TTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEE--TTTTEEEEEETTTTEE
T ss_pred             CCCceEEEEEEe---CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC-CCCCcceEEEe--eccceEEEEecCCCEE
Confidence            344567889887   1233444433333 655554332211111111111 12233345544  5455355555667899


Q ss_pred             EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117          111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  189 (346)
Q Consensus       111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (346)
                      .+.+++.......+.........+++.|..+.++.+- +..+.|.-.++.... ...+..  ..-..+.++++++.++.+
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~--~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT--ENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC--SSCSCEEEEEEETTTTEE
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccc--cccceeeEEEeeccccEE
Confidence            9999887665555555566789999999445455443 233456666765333 333321  234567899999844555


Q ss_pred             EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEE-eecCeEEEEcCC
Q 019117          190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK-SVDNEIVLWEPK  268 (346)
Q Consensus       190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~d~~i~iwd~~  268 (346)
                      ..+-...+.|...++.....                     ..+............+++.++.|... ..++.|...+..
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~---------------------~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNR---------------------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSC---------------------EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEecCCcCEEEEEECCCCCE---------------------EEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECC
Confidence            55556678898888865211                     11111111122345677765555554 456778777766


Q ss_pred             CCC
Q 019117          269 MKE  271 (346)
Q Consensus       269 ~~~  271 (346)
                      +++
T Consensus       238 ~g~  240 (266)
T d1ijqa1         238 TGS  240 (266)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.12  E-value=0.058  Score=45.39  Aligned_cols=59  Identities=10%  Similarity=-0.016  Sum_probs=39.3

Q ss_pred             CeEEEEEccCcceeeeeccCCCce---------EEEEEeCCCC---ceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSI---------NEIRTQPLKP---SLVVSASKDESVRLWNVQTGICILIF  167 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~  167 (346)
                      ..+...|.++++.+..++.....+         ....... ++   ..++.++.+|.+.+.|..+++.+...
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeec-cCccccceeeccccceEEEEecCCCcEeeee
Confidence            567888999999887776432211         1111222 22   25678889999999999999987543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.93  E-value=0.089  Score=44.27  Aligned_cols=41  Identities=12%  Similarity=0.147  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEE--EEecCCC
Q 019117          304 NAAAIGNREGKIFVWELQSSPPVLIARLICFSLH--VKYNPQS  344 (346)
Q Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~spdg  344 (346)
                      .++.+|+.||.++.+|.++|+.+-.+.+...+..  +.|.-||
T Consensus       489 glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  531 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG  531 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            5788899999999999999998877777654332  4444454

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.74  E-value=0.088  Score=41.54  Aligned_cols=115  Identities=11%  Similarity=0.041  Sum_probs=62.5

Q ss_pred             EEEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------C
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------G  108 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g  108 (346)
                      ...++.+    ++.+++.|+.+.  +.+||..+..-.. +....   ....-...+.  .+||+ +++.|+.+      .
T Consensus        79 ~~~~~~~----~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~---~~r~~~~~~~--~~dG~-v~v~GG~~~~~~~~~  147 (387)
T d1k3ia3          79 PGISMDG----NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQ---VARGYQSSAT--MSDGR-VFTIGGSWSGGVFEK  147 (387)
T ss_dssp             CEEEECT----TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCS---SCCSSCEEEE--CTTSC-EEEECCCCCSSSCCC
T ss_pred             eEEEEec----CCcEEEeecCCCcceeEecCccCcccc-ccccc---ccccccceee--ecCCc-eeeeccccccccccc
Confidence            3456666    788999887664  9999987765432 22111   1111112222  37888 77777643      3


Q ss_pred             eEEEEEccCcceeee--ec-------cCCC-----ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117          109 IIRVIDVSNEKLHKS--FV-------GHGD-----SINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC  163 (346)
Q Consensus       109 ~i~iwd~~~~~~~~~--~~-------~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  163 (346)
                      .+.+||..+.+-...  ..       .+..     .-..+...+ ++..+..++.++.+.+++..+...
T Consensus       148 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         148 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCcE
Confidence            689999877642110  00       0000     001111222 556666676677777777766543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.50  E-value=0.12  Score=40.10  Aligned_cols=156  Identities=11%  Similarity=0.149  Sum_probs=87.4

Q ss_pred             EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEE--cCCCCc-EEEEeec-C---Ce
Q 019117           37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC--NVDGIP-FLVAGGI-N---GI  109 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~-~l~~~~~-d---g~  109 (346)
                      -++-++|.+|...-+|.|.-..++.+||+ .|+.+..+.       .+.+.-+....  ..+++. -++.++. +   .+
T Consensus        29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~-------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~  100 (353)
T d1h6la_          29 PAIWLDPKNPQNSKLITTNKKSGLAVYSL-EGKMLHSYH-------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT  100 (353)
T ss_dssp             EEEECCSSCGGGCEEEEEETTSCCEEEET-TCCEEEECC-------SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE
T ss_pred             ceEEcCCCCcCccEEEEEcCcCCEEEEcC-CCcEEEecc-------cCCcCccccccccccCCcceEEEEEeCCcCccee
Confidence            35666776553333444443345999997 477665543       23344444331  112221 3444442 2   36


Q ss_pred             EEEEEccCc-ceeeeecc-------CCCceEEEEE--eCCCCc-eEEEeeCCCCEEEEecC---CC----eeEEEecccC
Q 019117          110 IRVIDVSNE-KLHKSFVG-------HGDSINEIRT--QPLKPS-LVVSASKDESVRLWNVQ---TG----ICILIFAGAG  171 (346)
Q Consensus       110 i~iwd~~~~-~~~~~~~~-------~~~~v~~~~~--~~~~~~-~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~  171 (346)
                      |.+|.+... ..+..+..       -...+..+++  ++.++. +++....+|.+..|.+.   .+    +.++.+.   
T Consensus       101 l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~---  177 (353)
T d1h6la_         101 IEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK---  177 (353)
T ss_dssp             EEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE---
T ss_pred             EEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC---
Confidence            888887532 22322221       1224666666  563443 56667788999888763   22    3455554   


Q ss_pred             CCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117          172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  205 (346)
Q Consensus       172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  205 (346)
                       ....+..|.+.. ....|+.+-++.-|..++..
T Consensus       178 -~~~q~EGCVvDd-e~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         178 -MNSQTEGMAADD-EYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             -CSSCEEEEEEET-TTTEEEEEETTTEEEEEESS
T ss_pred             -CCCccceEEEeC-CCCcEEEecCccceEEEEec
Confidence             567889999997 66778888777666555544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.45  E-value=0.066  Score=44.94  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=54.0

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.|.-+|+.+++.+..++.. .+...-...- .+.+++.|+.||.++.+|.++|+.+..++...+.....  +.+..++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            57888999999988776532 2222111222 46788889999999999999999999998644333333  23333244


Q ss_pred             cEEEEEe
Q 019117          188 YRIASCG  194 (346)
Q Consensus       188 ~~l~s~~  194 (346)
                      .+|+...
T Consensus       514 qyv~v~a  520 (560)
T d1kv9a2         514 QYVAIMA  520 (560)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.41  E-value=0.05  Score=43.05  Aligned_cols=108  Identities=15%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             CCCCcEEEEeecC-----C------eEEEEEccCcceee--ee-ccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecC
Q 019117           95 VDGIPFLVAGGIN-----G------IIRVIDVSNEKLHK--SF-VGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQ  159 (346)
Q Consensus        95 ~~~~~~l~~~~~d-----g------~i~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~  159 (346)
                      .+|+ +++.|+.+     +      .+.+||..+++-..  .. ..+.......++.+ ++.+++.|+.+ ..+.+||..
T Consensus        29 ~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          29 TSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             TTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGG
T ss_pred             eCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCc
Confidence            5677 77766632     1      37789998875332  12 22333345667778 78888888655 589999998


Q ss_pred             CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEcccc
Q 019117          160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEF  207 (346)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~  207 (346)
                      +..-.. ..... ....-.+++..+ ++.+++.++.+      ..+.+||..+.
T Consensus       107 ~~~w~~-~~~~~-~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         107 SDSWIP-GPDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GTEEEE-CCCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCcccc-ccccc-ccccccceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence            765433 22111 112223455565 78888888753      36889998874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.14  E-value=0.11  Score=43.60  Aligned_cols=82  Identities=12%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.|.-||+.+++.+..++... +...=...- .+.++++|+.||.++.+|.++|+.+.++....+..+..  +.|..++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            467788888888887765332 111111122 46788889999999999999999999998544333333  33333244


Q ss_pred             cEEEEE
Q 019117          188 YRIASC  193 (346)
Q Consensus       188 ~~l~s~  193 (346)
                      .+++..
T Consensus       533 QYv~v~  538 (573)
T d1kb0a2         533 QYVSVA  538 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.09  E-value=0.17  Score=42.56  Aligned_cols=51  Identities=14%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             cCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC-eeEEEEeecCCcceEEEE
Q 019117          249 LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD-IWFIKFSCDFHYNAAAIG  309 (346)
Q Consensus       249 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~l~~~  309 (346)
                      .+.++.+|+.||.++.+|.++++         .+-++...... -.-+.+..+|+ .|++..
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe---------~LW~~~~~~~~~~~P~ty~~~G~-qYv~i~  547 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGK---------ELWKFQTGSGIVSPPITWEQDGE-QYLGVT  547 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCC---------EEEEEECSSCCCSCCEEEEETTE-EEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCc---------EeEEEECCCCccccCEEEEECCE-EEEEEE
Confidence            37788889999999999999998         55555443211 11257778885 465543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.69  E-value=0.38  Score=38.56  Aligned_cols=242  Identities=11%  Similarity=0.034  Sum_probs=117.0

Q ss_pred             eEEEEEEeecCCCccEEEEEc----CCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----
Q 019117           36 LYAVVFNFIDSRYFNVFATVG----GNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----  105 (346)
Q Consensus        36 v~~~~~~p~~~~~~~~la~~~----~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----  105 (346)
                      +...++||    +++++|.+-    .+.  ++++|+.+++.+...-.      ......++|.  ++++.++.+.-    
T Consensus       127 ~~~~~~Sp----d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~------~~~~~~~~W~--~D~~~~~Y~~~~~~~  194 (430)
T d1qfma1         127 LRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE------RVKFSCMAWT--HDGKGMFYNAYPQQD  194 (430)
T ss_dssp             EEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE------EECSCCEEEC--TTSSEEEEEECCCCS
T ss_pred             ecceEecC----CCCEEEEEeccccCchheeEEeccCcceecccccc------cccccceEEc--CCCCEEEEEEecccc
Confidence            44556666    677777432    222  99999999886542211      1111236666  88883333321    


Q ss_pred             -----------cCCeEEEEEccCcce--eeeeccC--CCceEEEEEeCCCCceEEEe-e--CCCCEEEE--ecCCCe---
Q 019117          106 -----------INGIIRVIDVSNEKL--HKSFVGH--GDSINEIRTQPLKPSLVVSA-S--KDESVRLW--NVQTGI---  162 (346)
Q Consensus       106 -----------~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~l~s~-~--~d~~i~iw--d~~~~~---  162 (346)
                                 ....|..+.+.+...  ...+...  ...+..+..++ ++.+++.. .  .+....+|  |+....   
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~  273 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence                       123577787766532  2333322  33466777787 66665432 2  23344444  443211   


Q ss_pred             -----eEEEecccCCCCcceEEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117          163 -----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  234 (346)
Q Consensus       163 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
                           ....+.   .......-+...  ++.+++....   ++.|...++.....                     ....
T Consensus       274 ~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~Tn~~a~~~~L~~~~~~~~~~---------------------~~w~  327 (430)
T d1qfma1         274 TGILKWVKLID---NFEGEYDYVTNE--GTVFTFKTNRHSPNYRLINIDFTDPEE---------------------SKWK  327 (430)
T ss_dssp             CSSCCCEEEEC---SSSSCEEEEEEE--TTEEEEEECTTCTTCEEEEEETTBCCG---------------------GGCE
T ss_pred             ccccceeEeec---ccccceEEEecC--CceeecccCcccccceeEEecCCCCcc---------------------ccce
Confidence                 111122   122233333322  4444444433   35666666655211                     0111


Q ss_pred             E-EeecccceE--EEEecCCEEEEEe-ec--CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE
Q 019117          235 I-ASVHSNYVD--CNRWLGDFILSKS-VD--NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  308 (346)
Q Consensus       235 ~-~~~~~~~i~--~~~~~~~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  308 (346)
                      . +..+...+.  .+.+.+++|+..- .+  ..|+++++.+++.         ........+.+..+...++...-++..
T Consensus       328 ~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~---------~~~~~~~~~sv~~~~~~~~~~~~~~~~  398 (430)
T d1qfma1         328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL---------LKIFPLEVGSVVGYSGQKKDTEIFYQF  398 (430)
T ss_dssp             EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE---------EEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred             EEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcE---------EEecCCCCceEeeccCCCCCCEEEEEE
Confidence            2 223333333  3334466666554 44  3588899887652         112222334455444444443112222


Q ss_pred             Ec--CCCcEEEEEcCCCCc
Q 019117          309 GN--REGKIFVWELQSSPP  325 (346)
Q Consensus       309 ~~--~dg~i~iwd~~~~~~  325 (346)
                      .|  .=.+++-+|+.+++.
T Consensus       399 ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         399 TSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             ECSSCCCEEEEEETTSSSC
T ss_pred             cCCCCCCeEEEEECCCCCc
Confidence            22  235789999998864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.51  Score=35.07  Aligned_cols=25  Identities=8%  Similarity=0.147  Sum_probs=16.9

Q ss_pred             ecCCcceEEEEcCCC-----cEEEEEcCCCCc
Q 019117          299 CDFHYNAAAIGNREG-----KIFVWELQSSPP  325 (346)
Q Consensus       299 ~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  325 (346)
                      .++  ++++.|+.++     .|.+||+.+++-
T Consensus       241 ~~~--~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         241 HQG--RIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             ETT--EEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ECC--EEEEEecCCCCeecceEEEEECCCCEE
Confidence            355  5777776544     378899988753

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.78  E-value=0.55  Score=35.16  Aligned_cols=197  Identities=14%  Similarity=0.122  Sum_probs=111.3

Q ss_pred             CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeecc
Q 019117           48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVG  126 (346)
Q Consensus        48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~  126 (346)
                      ..+.+|.-+...+.+||+++.+.++...      -.+.|.--.|.  .+.  .|+... +..|.-|+++.. .+.+.+..
T Consensus        73 ~~~IiALrag~~LQiFnletK~klks~~------~~e~VvfWkWi--s~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          73 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVT-DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             SSSEEEEEETTEEEEEETTTTEEEEEEE------CSSCCCEEEES--SSS--EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             CCcEEEEecCCeEEEEehhHhhhhceEE------cCCCcEEEEec--CCC--EEEEEc-CCceEEEcccCCCCchhhhhh
Confidence            5678888876669999999888877765      33445334443  443  465555 457999999543 35555554


Q ss_pred             CC----CceEEEEEeCCCCceEEEee---C----CCCEEEEecCCCeeEEEecccCCCCcceEEEEecC--CCCcEEEEE
Q 019117          127 HG----DSINEIRTQPLKPSLVVSAS---K----DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP--SDIYRIASC  193 (346)
Q Consensus       127 ~~----~~v~~~~~~~~~~~~l~s~~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~  193 (346)
                      |.    ..|..-..++ +.++++..+   .    .|.+.+|..+.+ .-+.+.   +|......+.+.-  ....+++-+
T Consensus       142 ~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa  216 (327)
T d1utca2         142 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA  216 (327)
T ss_dssp             CGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC---CSEEEEEEECCTTCSSCEEEEEEE
T ss_pred             cccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc---ceeeeeEEEEcCCCCCCceEEEEE
Confidence            43    4677777787 556554332   2    367888888643 445555   6765555554431  011233322


Q ss_pred             e---cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117          194 G---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  268 (346)
Q Consensus       194 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  268 (346)
                      .   ..+++++-++......          ...+..+.. ........-.+--.++..+  -..+..-+.-|.|.+||+.
T Consensus       217 ~r~~~~~kLhIiEig~~~~g----------~~~f~kk~v-di~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDle  285 (327)
T d1utca2         217 VRGQAGGKLHIIEVGTPPTG----------NQPFPKKAV-DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  285 (327)
T ss_dssp             EEETTEEEEEEEECSCCCTT----------CCCCCCEEE-ECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             ECCCCCcEEEEEEcCCCccC----------CCCCcceeE-EEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcc
Confidence            2   2357788777662110          000000000 0000011112333445555  4577888899999999999


Q ss_pred             CCC
Q 019117          269 MKE  271 (346)
Q Consensus       269 ~~~  271 (346)
                      ++.
T Consensus       286 Tgt  288 (327)
T d1utca2         286 TGT  288 (327)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            987

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.25  E-value=0.16  Score=42.74  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=54.1

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.|.-+|+.+++.+...+.+. ++..-..+. .+.++++|+.||.++.+|.++|+.+..++...+.....  +.|..++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            678889999998887776432 222111222 56788889999999999999999999998543333322  34444244


Q ss_pred             cEEEEE
Q 019117          188 YRIASC  193 (346)
Q Consensus       188 ~~l~s~  193 (346)
                      ++++..
T Consensus       542 qYv~i~  547 (582)
T d1flga_         542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.11  E-value=0.92  Score=35.00  Aligned_cols=208  Identities=11%  Similarity=0.044  Sum_probs=114.6

Q ss_pred             EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeC----C-CCceEEEee-CC-C--CEEEEecC-CCeeEEEecc
Q 019117          100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP----L-KPSLVVSAS-KD-E--SVRLWNVQ-TGICILIFAG  169 (346)
Q Consensus       100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~~l~s~~-~d-~--~i~iwd~~-~~~~~~~~~~  169 (346)
                      +++....++-|.+||++ |+.+..+.  .+.++.|..-.    . ...-++.++ ++ +  +|.+|.+. ....+..+..
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            67777777779999985 77777664  35566555442    0 122344444 22 2  57778774 2233333331


Q ss_pred             cC----CCCcceEEEEe--cCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117          170 AG----GHRNEVLSVDF--HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  242 (346)
Q Consensus       170 ~~----~~~~~v~~~~~--~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
                      ..    .....++.+|+  +|.++. +++....+|.+..|.+.......                .....++.+.. ...
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~----------------v~~~lvr~f~~-~~q  181 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY----------------ISGKKVRAFKM-NSQ  181 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS----------------EEEEEEEEEEC-SSC
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc----------------eeeEeeeccCC-CCc
Confidence            10    01234677777  554443 56777788999999885421100                00122333332 345


Q ss_pred             eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEee--cCCcceEEEEcCCCcEE
Q 019117          243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSC--DFHYNAAAIGNREGKIF  316 (346)
Q Consensus       243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~--~~~~~~l~~~~~dg~i~  316 (346)
                      +..+.++  .+.|..+-++..|..++.......    ....+....  .....+..|+.-.  ++++-+|++.-.+++..
T Consensus       182 ~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~----~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEESSTTSCS----CCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             cceEEEeCCCCcEEEecCccceEEEEeccCCCc----cceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            7777787  568888877766665555422110    111121111  1346788887664  34433556666788999


Q ss_pred             EEEcCCC-Ccceeeee
Q 019117          317 VWELQSS-PPVLIARL  331 (346)
Q Consensus       317 iwd~~~~-~~~~~~~~  331 (346)
                      +||..+. +.+..+.+
T Consensus       258 vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         258 IYERQGQNKYVADFQI  273 (353)
T ss_dssp             EEESSTTCCEEEEEEE
T ss_pred             EEecCCCccccceEEE
Confidence            9998773 44444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=1.1  Score=34.97  Aligned_cols=143  Identities=9%  Similarity=0.072  Sum_probs=84.5

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc-------eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN  107 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  107 (346)
                      ...-++.++    ...+|+.|+.++++|.....-.       ....+..   ...-..|..++++  .+   .|+.. .+
T Consensus        38 ~~~LLAVsn----~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~---~~~ip~v~~vafs--~d---~l~v~-~~  104 (381)
T d1xipa_          38 SLQNLDISN----SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKW---EKEIPDVIFVCFH--GD---QVLVS-TR  104 (381)
T ss_dssp             CCBCEEEET----TTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSE---EEECTTEEEEEEE--TT---EEEEE-ES
T ss_pred             ccceEEEeC----CCCEEEEECCCEEEEEEHHHHHHHhhccCCCCccee---ccCCCCeEEEEee--CC---EEEEE-eC
Confidence            456678876    4567888888888888753210       0001110   0011245555554  33   45554 35


Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc--CCCCcceEEEEecCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA--GGHRNEVLSVDFHPS  185 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~  185 (346)
                      +.+..++...-........-..++..+.++|   ..++....++.+.++++..++........  ..-.+.+.+++|++ 
T Consensus       105 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-  180 (381)
T d1xipa_         105 NALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-  180 (381)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-
T ss_pred             CCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-
Confidence            6788888776554444444556788888887   35566667899999999887643322100  01235677888886 


Q ss_pred             CCcEEEEEe
Q 019117          186 DIYRIASCG  194 (346)
Q Consensus       186 ~~~~l~s~~  194 (346)
                      ++..++++.
T Consensus       181 kgkq~v~~~  189 (381)
T d1xipa_         181 RSFQSFAWR  189 (381)
T ss_dssp             SCEEEEEEE
T ss_pred             CcEEEEEeC
Confidence            777777764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.48  E-value=0.16  Score=42.83  Aligned_cols=82  Identities=12%  Similarity=0.065  Sum_probs=52.5

Q ss_pred             CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117          108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  187 (346)
Q Consensus       108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  187 (346)
                      |.|.-||+.+++.+..... ..++..=..+- .+.+++.|+.||.++.+|.++|+.+.++....+.....  +.|..++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCE
Confidence            5788889999988766542 22222111222 46788889999999999999999999998543333332  22333255


Q ss_pred             cEEEEE
Q 019117          188 YRIASC  193 (346)
Q Consensus       188 ~~l~s~  193 (346)
                      ++++..
T Consensus       529 QYvav~  534 (596)
T d1w6sa_         529 QYVAIY  534 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=1.8  Score=33.76  Aligned_cols=137  Identities=11%  Similarity=0.008  Sum_probs=76.6

Q ss_pred             ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117           35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID  114 (346)
Q Consensus        35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  114 (346)
                      .|..++|+-      +.|+....+++..++...-........+     ...+..+.+.  |.   .++....++.+.+++
T Consensus        88 ~v~~vafs~------d~l~v~~~~~l~~~~~~~l~~~~~~~~~-----~~~~~~~~~~--p~---~~~l~~~~~~~~~~~  151 (381)
T d1xipa_          88 DVIFVCFHG------DQVLVSTRNALYSLDLEELSEFRTVTSF-----EKPVFQLKNV--NN---TLVILNSVNDLSALD  151 (381)
T ss_dssp             TEEEEEEET------TEEEEEESSEEEEEESSSTTCEEEEEEC-----SSCEEEEEEC--SS---EEEEEETTSEEEEEE
T ss_pred             CeEEEEeeC------CEEEEEeCCCEEEEEeeccccccccccc-----cccccceecC--Cc---eeEEEecCCCEEEEE
Confidence            588899974      4566666677888886654443333322     2334444443  43   566677789999999


Q ss_pred             ccCcceeeeec-----cCCCceEEEEEeCCCCceEEEeeCCCCEEEE-ecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117          115 VSNEKLHKSFV-----GHGDSINEIRTQPLKPSLVVSASKDESVRLW-NVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  188 (346)
Q Consensus       115 ~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (346)
                      +..++......     .-.+.+.++.|++ ++..++++..++ ..+- ++....   .+.........|.++.|-. +..
T Consensus       152 l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~-~~~  225 (381)
T d1xipa_         152 LRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEFSLPS---ELEELPVEEYSPLSVTILS-PQD  225 (381)
T ss_dssp             TTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEECCCH---HHHTSCTTTSEEEEEEESS-SSE
T ss_pred             eccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCCCCcc---ccCCCcCCCcceeEEEEec-Cce
Confidence            98876432221     1235677888887 777777663221 1110 111111   1111112445788999984 555


Q ss_pred             EEEEE
Q 019117          189 RIASC  193 (346)
Q Consensus       189 ~l~s~  193 (346)
                      ++++-
T Consensus       226 F~vvy  230 (381)
T d1xipa_         226 FLAVF  230 (381)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.10  E-value=1.9  Score=33.03  Aligned_cols=161  Identities=9%  Similarity=0.004  Sum_probs=91.1

Q ss_pred             EEEEEEeecCCCccEEEEEcC-------------CcEEEEEeccCceee-eEeeeecCCC--ccceEEEEEEEcCCCCcE
Q 019117           37 YAVVFNFIDSRYFNVFATVGG-------------NRVTVYQCLEGGVIA-ALQSYVDEDK--EESFYTVSWACNVDGIPF  100 (346)
Q Consensus        37 ~~~~~~p~~~~~~~~la~~~~-------------~~v~i~~~~~~~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~~~~  100 (346)
                      -+++..|    +|..+.+++.             +.|.++|+.+..... .+........  .-....+.+....+|+.+
T Consensus        38 EDi~~~~----dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~  113 (340)
T d1v04a_          38 EDLEILP----NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  113 (340)
T ss_dssp             CEEEECT----TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred             ceEEECC----CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence            3577777    6777766642             338889987654332 2221111100  112344555545677645


Q ss_pred             EEEee---cCCeEEEEEccCcce----eeeecc-CCCceEEEEEeCCCCceEEEee--C-------------CCCEEEEe
Q 019117          101 LVAGG---INGIIRVIDVSNEKL----HKSFVG-HGDSINEIRTQPLKPSLVVSAS--K-------------DESVRLWN  157 (346)
Q Consensus       101 l~~~~---~dg~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~s~~--~-------------d~~i~iwd  157 (346)
                      |++..   ...+|.++++.....    +..+.. .....+++++.. ++.+++|-.  .             -+...+|.
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            65543   456899999865432    222221 234578898888 777777721  1             12334444


Q ss_pred             cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117          158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  206 (346)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  206 (346)
                      .+.++......    .-...+.++++|++..++++-+..+.|+.|++..
T Consensus       193 ~~~~~~~~~~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         193 YSPNDVRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             ECSSCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EcCCceEEEcC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            44443322222    3456899999994445556667788999999876

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.00  E-value=2.2  Score=30.00  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc--------ceEEEEecCCCCcEEEEEec-CCeE
Q 019117          129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN--------EVLSVDFHPSDIYRIASCGM-DNTV  199 (346)
Q Consensus       129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~l~s~~~-d~~i  199 (346)
                      -.|.+++..  +.+..++|+......+|-++.|+.......  ..-+        .|..+.+-.-+..-++++.. .|.+
T Consensus       104 vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~v--PpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         104 MRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARL--PGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             BEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEE--SSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             EEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccC--CCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            345666654  677888888888889998887764433221  1222        33333333213344555555 6777


Q ss_pred             EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEee---cCeEEEEcCCCCCCCCC
Q 019117          200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV---DNEIVLWEPKMKEQSPG  275 (346)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~---d~~i~iwd~~~~~~~~~  275 (346)
                      ++++...+                                  .++...+. |+.+++.-.   +....-+|+++++....
T Consensus       180 ri~tpkeG----------------------------------S~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerv  225 (313)
T d2hu7a1         180 RVFDSGEG----------------------------------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDL  225 (313)
T ss_dssp             EEECCSSE----------------------------------EEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEEC
T ss_pred             EEecCCCC----------------------------------cccceeEccCceeeeccCCCCceEEEEEecccCceeee
Confidence            77776552                                  22222222 444433322   12222558876642211


Q ss_pred             CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117          276 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  319 (346)
Q Consensus       276 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd  319 (346)
                      .-...-...+.  ...|+-+-+.|++  ++++.+-.||.=++|.
T Consensus       226 e~P~kd~~sy~--p~~I~~~~Y~Pdd--~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         226 ELPSKDFSSYR--PTAITWLGYLPDG--RLAVVARREGRSAVFI  265 (313)
T ss_dssp             CCSSCHHHHHC--CSEEEEEEECTTS--CEEEEEEETTEEEEEE
T ss_pred             ecCcccceeec--ceEEEeeeeCCCC--cEEEEEecCCchheee
Confidence            11111112221  2345556688988  6778888999988886

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.49  E-value=4  Score=32.27  Aligned_cols=104  Identities=10%  Similarity=0.001  Sum_probs=59.3

Q ss_pred             cceEEEEEEEcCCCCcEEE-EeecC----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC--------
Q 019117           84 ESFYTVSWACNVDGIPFLV-AGGIN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD--------  150 (346)
Q Consensus        84 ~~v~~~~~~~~~~~~~~l~-~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------  150 (346)
                      ..+....++++|+++ +++ +-+..    ..|+++|+.+++.+...-. ......+.|.+ ++..|+-...+        
T Consensus       123 ~~~~~~~~~~Spd~~-~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred             ccceecceEecCCCC-EEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcC-CCCEEEEEEeccccCcccc
Confidence            344445677889999 555 43333    4799999999987642221 12235788999 55555433221        


Q ss_pred             --------CCEEEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117          151 --------ESVRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIAS  192 (346)
Q Consensus       151 --------~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  192 (346)
                              ..|..+.+.+...  ...+.. ......+..+..++ ++++++.
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~-d~~~l~i  249 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSD-DGRYVLL  249 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECT-TSCEEEE
T ss_pred             cccccCCcceEEEEECCCCcccccccccc-ccCCceEEeeeccC-CcceeeE
Confidence                    2477777765432  222221 02234566677786 6666653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.99  E-value=4.6  Score=32.25  Aligned_cols=33  Identities=9%  Similarity=-0.092  Sum_probs=26.1

Q ss_pred             CcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117          174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  207 (346)
Q Consensus       174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  207 (346)
                      -...++|+|.| +++++++--..|.|++++..+.
T Consensus        26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g   58 (450)
T d1crua_          26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESG   58 (450)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCC
Confidence            35678999999 8888877655799999887664