Citrus Sinensis ID: 019128

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Secondary Structure (PSIPRED)
cccHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccEEcccccccEEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEcHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEcEEcccccEEEEEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccccHHHHccccccEcccccHHHHHHHHHHHccccccEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEcccccccEEEccccHHHHHHHHHHHccccEEEEEEcccEEEEEccHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHccccccccEEcccccEEEEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKDIATRVIARElnleetpvskvmtrnptfvlsDTLAVEALQKMVQGkfrhlpvvengevIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEkhwgtsisgpnTFIETLRERmfrpslstiipekskvvtisptDTVLMATKKMLELRLSSAvvtvenkprgiltsKDILMRVISqnlpadstlvekvmtpnpecatidtpivDALHimhdgkflhlpvvdrdgdvvdVVDVIHITHAAVATvgntagsnnEAASTMMQKFWDSamalspnddeednrsegslkfasegadtarylsypspspgvpsafafkvqdnkglmhrftcgmlpfpnfievtnyeylv
Flexible Loop (DISEMBL)
mkdiatrviarelnleetpvskvmtrnpTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEgvekhwgtsisgpnTFIETLRERMFRPslstiipekskvvtisptDTVLMATKKMLELRLssavvtvenkprgiltskdiLMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAavatvgntagSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Low Complexity Region (SEG)
MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERaaekgkaiaaavegvekHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPvvdrdgdvvdvvdvIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered region (IsUnstruct)
*******VIARELNL***PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT*************************************************************************************************
Disordered Region (DISOPRED)
MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP******************IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA*********************FWD********************************************AFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered Region (DISEMBL)
MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMAL*************SLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered Region (DISPRO)
MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMAL************************************VPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
P0DH79	548	CBS domain-containing pro	yes	no	0.921	0.582	0.734	1e-138
Q0WLC7	548	CBS domain-containing pro	yes	no	0.921	0.582	0.734	1e-138
Q9FMV3	543	CBS domain-containing pro	no	no	0.916	0.583	0.741	1e-123
Q9LF97	556	CBS domain-containing pro	no	no	0.933	0.580	0.634	1e-118
Q9SJQ5	536	CBS domain-containing pro	no	no	0.942	0.608	0.613	1e-113
O13965	730	Meiotically up-regulated	yes	no	0.690	0.327	0.284	3e-27
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.317	0.670	0.359	5e-08
P50100	196	Uncharacterized protein M	no	no	0.343	0.607	0.292	1e-07
Q58069	194	Uncharacterized protein M	yes	no	0.265	0.474	0.343	6e-06
Q9LEV3	206	CBS domain-containing pro	no	no	0.303	0.509	0.288	6e-05

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/328 (73%), Positives = 281/328 (85%), Gaps = 9/328 (2%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+AVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 111 RDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIAVEALQKMVQGKFRHLPVVENGEVI 170

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+WGTSI+GPNTF+ETLRER+F+PSL
Sbjct: 171 ALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSL 230

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE +KV+ +   +TVL  T KM+E + S+A+V VENK  GILTSKDILMRVISQNL
Sbjct: 231 STIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMVMVENKLVGILTSKDILMRVISQNL 290

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKFLHLPV+D+DGDVV V+DVIHITHA
Sbjct: 291 PQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHA 350

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRS-EGSLKFASEGADTARYLS 300
           AV T G+TAG NNE A++MMQKFWDSAMALSPN+D ++ RS E S+K +SE  +  +  S
Sbjct: 351 AVTTAGSTAGINNETANSMMQKFWDSAMALSPNEDGDETRSEEESMKLSSE-IEVTKSFS 409

Query: 301 YPSPSPGVPSAFAFKVQDNKGLMHRFTC 328
           Y       P+ FAFK+QD KG MHRF C
Sbjct: 410 Y-------PNTFAFKLQDKKGRMHRFMC 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/328 (73%), Positives = 281/328 (85%), Gaps = 9/328 (2%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+AVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 111 RDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIAVEALQKMVQGKFRHLPVVENGEVI 170

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+WGTSI+GPNTF+ETLRER+F+PSL
Sbjct: 171 ALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSL 230

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE +KV+ +   +TVL  T KM+E + S+A+V VENK  GILTSKDILMRVISQNL
Sbjct: 231 STIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMVMVENKLVGILTSKDILMRVISQNL 290

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKFLHLPV+D+DGDVV V+DVIHITHA
Sbjct: 291 PQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHA 350

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRS-EGSLKFASEGADTARYLS 300
           AV T G+TAG NNE A++MMQKFWDSAMALSPN+D ++ RS E S+K +SE  +  +  S
Sbjct: 351 AVTTAGSTAGINNETANSMMQKFWDSAMALSPNEDGDETRSEEESMKLSSE-IEVTKSFS 409

Query: 301 YPSPSPGVPSAFAFKVQDNKGLMHRFTC 328
           Y       P+ FAFK+QD KG MHRF C
Sbjct: 410 Y-------PNTFAFKLQDKKGRMHRFMC 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/325 (74%), Positives = 277/325 (85%), Gaps = 8/325 (2%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 103 KDIATRVISQELNVEETPVSKVMTKNPMFVLSETLAVEALQKMVQGKFRHLPVVENGEVI 162

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK WGT+ S PNTFIETLR+RMFRPSL
Sbjct: 163 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKSWGTNTSVPNTFIETLRDRMFRPSL 222

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIP+ +KV+ +SPTDTVL   KKM+E + S AVV +E+K RGI TSKDILMRV+++NL
Sbjct: 223 STIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVVIIEDKLRGIFTSKDILMRVVAENL 282

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P   TLVE VMT NPE   +DTPIV+ALHIMH+GKFLHLPV D++GDVV VVDVIH+THA
Sbjct: 283 PPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKFLHLPVTDKEGDVVAVVDVIHVTHA 342

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           AVAT G TAG  NEA +TMMQKFWDSAMALSPN+D+ED+RSE S+K ASE A+T +  S+
Sbjct: 343 AVATAGTTAGIGNEATNTMMQKFWDSAMALSPNEDDEDSRSESSMKVASE-AETGK--SF 399

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRF 326
           P       + F+FK++D K   HRF
Sbjct: 400 P-----FANTFSFKIEDKKHRKHRF 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/328 (63%), Positives = 260/328 (79%), Gaps = 5/328 (1%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KD+ATRVIA  L  ++T VSKVMTRNP FV SD+LA+EALQKMVQGKFRHLPVVENGEVI
Sbjct: 112 KDVATRVIAEGLRPDQTLVSKVMTRNPIFVTSDSLALEALQKMVQGKFRHLPVVENGEVI 171

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDI KCLYDAI+RME+AAE+G A+AAAVEGVEK WG+  S P  FIETLRERMF+P+L
Sbjct: 172 ALLDITKCLYDAISRMEKAAEQGSALAAAVEGVEKQWGSGYSAPYAFIETLRERMFKPAL 231

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STII + SKV  ++P+D V +A K+M +LR++S +++  NK  GILTSKDILMRV++QNL
Sbjct: 232 STIITDNSKVALVAPSDPVSVAAKRMRDLRVNSVIISTGNKISGILTSKDILMRVVAQNL 291

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
             + TLVEKVMTPNPECA+++T I+DALH MHDGKFLHLP++D+DG     VDV+ ITHA
Sbjct: 292 SPELTLVEKVMTPNPECASLETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHA 351

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           A++ V N++G+ N+ A+TMMQKFWDSA+AL P DD  D +SE S       +D  +  SY
Sbjct: 352 AISMVENSSGAVNDMANTMMQKFWDSALALEPPDD-SDTQSEMSAMM--HHSDIGKLSSY 408

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCG 329
             PS G+ ++F+FK +D KG +HRFT G
Sbjct: 409 --PSLGLGNSFSFKFEDLKGRVHRFTSG 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/339 (61%), Positives = 256/339 (75%), Gaps = 13/339 (3%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIA  L  E T VSKVMTRNP FV SD+LA+EALQKMVQGKFRHLPVVENGEVI
Sbjct: 110 KDIATRVIAEGLRPEHTLVSKVMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVI 169

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDI KCLYDAI+RME+AAE+G A+A AVE  E+HWG   SG   FI+TLRERMF+P+L
Sbjct: 170 ALLDITKCLYDAISRMEKAAEQGSALATAVE--ERHWG---SGNFAFIDTLRERMFKPAL 224

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STI+ E +KV  +S +D V +A+KKM +LR++S ++ V NK  GILTSKDILMRV++QNL
Sbjct: 225 STIVTENTKVALVSASDPVFVASKKMRDLRVNSVIIAVGNKIHGILTSKDILMRVVAQNL 284

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
             + TLVEKVMTPNPECA+I+T I+DALHIMHDGKFLHLPV D+DG  V  +DV+ ITHA
Sbjct: 285 SPELTLVEKVMTPNPECASIETTILDALHIMHDGKFLHLPVFDKDGFAVACLDVLQITHA 344

Query: 242 AVATV-GNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLS 300
           A++TV  N++G+ N+ A+TMMQKFWDSA+AL P +D E +    ++   SEG  +     
Sbjct: 345 AISTVENNSSGAVNDMANTMMQKFWDSALALEPPEDYETHSDMSAMLINSEGKQSC---- 400

Query: 301 YPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV 339
              PS G+ S+FAFK +D KG + RF      F   + V
Sbjct: 401 ---PSQGLVSSFAFKFEDRKGRVQRFNSTGESFEELMSV 436

Arabidopsis thaliana (taxid: 3702)

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 138/264 (52%), Gaps = 25/264 (9%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV------- 55
           DIATR +   LN  +T ++ +M+ +P  + SDT   +AL  M++ KFRHLPVV       
Sbjct: 114 DIATRCVGAGLNARQTLIADIMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVSDGGPDG 173

Query: 56  ---ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW----------GTSI 102
              + G+VI ++++  CL + + R+ R  E  + +  A+EG ++             +S+
Sbjct: 174 SAGDEGDVIGIINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSV 233

Query: 103 SGPNT-----FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 157
           SG +      ++E+L+++     + ++I    +   +    TV  AT+ M    +S+ +V
Sbjct: 234 SGNHAAEFLEYVESLKKKASGLEIMSLIDSSEEPFLVGTRTTVAEATESMARSGVSAVLV 293

Query: 158 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 217
                  G+ T+ D+++RV++  L    + V +VMTP+P+CA     +  AL  M +GKF
Sbjct: 294 MDNGAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVMTPHPDCALASLRVSTALERMIEGKF 353

Query: 218 LHLPVVDRDGDVVDVVDVIHITHA 241
            +LPVVD    ++ ++ + H+  A
Sbjct: 354 SNLPVVDESDAIIGMLSLFHLATA 377

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTL 187
           +KV  + P  T+  A K+M E  L S VV   +N+  GI+T +DI+    + N   DS  
Sbjct: 11  TKVYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDIVKA--ASNRDIDSP- 67

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           VEK MT + +  T DT + DAL IM +  F HLP++  +G +  +V +  +  A
Sbjct: 68  VEKYMTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARA 121

Acidianus ambivalens (taxid: 2283)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 186
           +  V+T SPT+T +    KM E  + S V+  E ++P GI+T +D++++V+SQ    D  
Sbjct: 11  RRDVITGSPTETAVEIAYKMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEV 70

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAV 243
           +   +M+        D  + +A+ +M D     LP+VD +G ++ +V   D++ +    V
Sbjct: 71  IARDIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLV 130

Query: 244 ATV 246
           AT+
Sbjct: 131 ATI 133

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 147 MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV 206
           M E  + + V+   NKP GI+T +DI+ RV+S+NL     L E+VM+        +  I 
Sbjct: 33  MTENNIGAVVIVENNKPIGIVTERDIVKRVVSKNLKPKDVLAEEVMSKKIITIPQNASIT 92

Query: 207 DALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 239
           +A  IM       LPVV +DG++V +V   D++ ++
Sbjct: 93  EAAKIMATHGIKRLPVV-KDGELVGIVTQSDIVRVS 127

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 138 DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 194
           DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct: 79  DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query: 195 NPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243
             +  T+  +T ++ A+ +M D +  H+PV+ +D  ++ +V +  +  A V
Sbjct: 139 ENKLITVTPETKVLRAMQLMTDNRIRHIPVI-KDKGMIGMVSIGDVVRAVV 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
255540203	545	conserved hypothetical protein [Ricinus	0.965	0.612	0.836	1e-162
118484915	541	unknown [Populus trichocarpa]	0.965	0.617	0.824	1e-160
449440540	540	PREDICTED: CBS domain-containing protein	0.965	0.618	0.821	1e-158
359491097	541	PREDICTED: CBS domain-containing protein	0.962	0.615	0.812	1e-155
225456355	546	PREDICTED: CBS domain-containing protein	0.962	0.609	0.812	1e-155
125528914	497	hypothetical protein OsI_04983 [Oryza sa	0.939	0.653	0.788	1e-152
224122050	535	predicted protein [Populus trichocarpa]	0.962	0.622	0.775	1e-150
357126564	550	PREDICTED: CBS domain-containing protein	0.939	0.590	0.773	1e-149
147863576	569	hypothetical protein VITISV_019408 [Viti	0.956	0.581	0.740	1e-148
356511510	542	PREDICTED: CBS domain-containing protein	0.939	0.599	0.783	1e-147

>gi|255540203|ref|XP_002511166.1| conserved hypothetical protein [Ricinus communis] gi|223550281|gb|EEF51768.1| conserved hypothetical protein [Ricinus communis]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/336 (83%), Positives = 301/336 (89%), Gaps = 2/336 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIARELNLEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 103 KDIATRVIARELNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 162

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+WGT+ SGPNTFIETLRERMFRPSL
Sbjct: 163 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTTFSGPNTFIETLRERMFRPSL 222

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STI+PE SKVVT+ PT+TVL  TKKMLE R SSAVV V+ KPRGILTSKDILMRVI+QNL
Sbjct: 223 STILPENSKVVTVLPTETVLAVTKKMLESRSSSAVVIVDQKPRGILTSKDILMRVIAQNL 282

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P+DSTL EKVMTPNPECATIDTPIVDALH MHDGKFLHLPV+DRDG+VV VVDVIHITHA
Sbjct: 283 PSDSTLAEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVLDRDGNVVAVVDVIHITHA 342

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           AVATVG+TAG NNEAASTMMQKFWDSAMALSPN+D++D RSEGSLK  SEGA+T R L Y
Sbjct: 343 AVATVGSTAGVNNEAASTMMQKFWDSAMALSPNEDDDDTRSEGSLKLPSEGAETGRSLPY 402

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 337
             PS G P++F FK++D KG MHRFT       + I
Sbjct: 403 --PSAGFPNSFGFKIEDKKGRMHRFTSDTRSLTDLI 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484915|gb|ABK94323.1| unknown [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/336 (82%), Positives = 302/336 (89%), Gaps = 2/336 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 100 KDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 159

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+WGTSIS PNTFIETLRERMFRP+L
Sbjct: 160 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSISVPNTFIETLRERMFRPAL 219

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE SKVVT+SP++TVL+ TKKMLE R   AVVTV+ KPRGI TSKDILMRVI+QNL
Sbjct: 220 STIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVVTVDEKPRGIFTSKDILMRVIAQNL 279

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P DSTLVEKVMTPNPECATIDTPIVDALH MHDGKFLHLPVVDRDG++V V+DVIHITHA
Sbjct: 280 PPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVVDRDGNIVAVIDVIHITHA 339

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           AVATVGNT G+NNE ASTMMQKFWDSAMA+SPNDDE++ RSEGSLK ASEG +TAR L Y
Sbjct: 340 AVATVGNTTGANNETASTMMQKFWDSAMAMSPNDDEDETRSEGSLKIASEGTETARSLLY 399

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 337
             PS G+P+ F+FK++D KG MHRFTC      + I
Sbjct: 400 --PSSGLPNNFSFKIEDKKGRMHRFTCETRSLTDLI 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440540|ref|XP_004138042.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus] gi|449520507|ref|XP_004167275.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/336 (82%), Positives = 303/336 (90%), Gaps = 2/336 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIA  +NLEET VSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 100 KDIATRVIACGINLEETSVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 159

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK WGTS+SGPNTFIETLRERMFRPSL
Sbjct: 160 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKSWGTSVSGPNTFIETLRERMFRPSL 219

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE  K+VT+ PT+TVLMATKKMLELR+SSAVVTV++KP+GILTSKDILMR+I+QNL
Sbjct: 220 STIIPENLKIVTVPPTETVLMATKKMLELRVSSAVVTVDSKPQGILTSKDILMRLIAQNL 279

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P DSTLVEKVMTPNPECA+IDTPIVDALH MHDGKFLHLPVVDRDG+VV VVDVIHITHA
Sbjct: 280 PPDSTLVEKVMTPNPECASIDTPIVDALHTMHDGKFLHLPVVDRDGNVVAVVDVIHITHA 339

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           AVATVGNT+G  NEAAS+MMQKFWDSAMALSPNDD+++ RSEGS+K ASE  DT R L  
Sbjct: 340 AVATVGNTSGVGNEAASSMMQKFWDSAMALSPNDDDDELRSEGSMKLASEETDTLRTL-- 397

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 337
           P PSPG+ + F+FK++D +G MHRF+C      + I
Sbjct: 398 PFPSPGMSNTFSFKLEDRRGRMHRFSCDTRSLTDVI 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491097|ref|XP_003634219.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera] gi|297734436|emb|CBI15683.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/336 (81%), Positives = 295/336 (87%), Gaps = 3/336 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIARELNLEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 100 KDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 159

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+WGTS+SGP+TFIETLRERMFRP+L
Sbjct: 160 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPAL 219

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV VEN+P+GILTSKDILMRVI+QNL
Sbjct: 220 STIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNL 279

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
             +ST VEKVMTPNPECATIDTPIVDALH MHDGKFLHLPV+DRDG VV V DVIHITHA
Sbjct: 280 HPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHA 339

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           AVATVG  AG NNEAAS++MQKFWDSAMAL  +DDEE  RSEGSLK ASEG +  R L Y
Sbjct: 340 AVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDEE-TRSEGSLKLASEGTEIGRTLPY 398

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 337
            S +  + + FAFK++D +G MHRFTC      + I
Sbjct: 399 TSSA--MHNTFAFKIEDKRGRMHRFTCDTRSLTDVI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456355|ref|XP_002283958.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 1 [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/336 (81%), Positives = 295/336 (87%), Gaps = 3/336 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIARELNLEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 105 KDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 164

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+WGTS+SGP+TFIETLRERMFRP+L
Sbjct: 165 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPAL 224

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV VEN+P+GILTSKDILMRVI+QNL
Sbjct: 225 STIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNL 284

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
             +ST VEKVMTPNPECATIDTPIVDALH MHDGKFLHLPV+DRDG VV V DVIHITHA
Sbjct: 285 HPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHA 344

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           AVATVG  AG NNEAAS++MQKFWDSAMAL  +DDEE  RSEGSLK ASEG +  R L Y
Sbjct: 345 AVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDEE-TRSEGSLKLASEGTEIGRTLPY 403

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 337
            S +  + + FAFK++D +G MHRFTC      + I
Sbjct: 404 TSSA--MHNTFAFKIEDKRGRMHRFTCDTRSLTDVI 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528914|gb|EAY77028.1| hypothetical protein OsI_04983 [Oryza sativa Indica Group] gi|125573153|gb|EAZ14668.1| hypothetical protein OsJ_04591 [Oryza sativa Japonica Group]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/327 (78%), Positives = 289/327 (88%), Gaps = 2/327 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDI TRVIAREL LEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 55  KDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 114

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG S+SGPNTFIETLRERMFRPSL
Sbjct: 115 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGASVSGPNTFIETLRERMFRPSL 174

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STII E SKVVT++PTDTVL A+KKMLE+++SSAVV +ENKP GILTS+DILMRVI+QNL
Sbjct: 175 STIISENSKVVTVAPTDTVLTASKKMLEVKVSSAVVAIENKPGGILTSRDILMRVIAQNL 234

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P +ST VEKVMT  PECAT+DTPI+DALH MHDGKFLHLPV+D+DG+VV VVDV+HITHA
Sbjct: 235 PPESTTVEKVMTQTPECATVDTPILDALHTMHDGKFLHLPVLDKDGNVVTVVDVLHITHA 294

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           A+ATVGN+AGS +EA S MMQ+FWDSAM++ P DD++D+RSEGS K ASE  D  R   Y
Sbjct: 295 AIATVGNSAGSGSEATSAMMQRFWDSAMSIGPLDDDDDSRSEGSTKVASEATDVGRSAFY 354

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTC 328
             P+ G+ + F FK+QD +G MHRF C
Sbjct: 355 --PASGLSNTFGFKIQDKQGRMHRFNC 379

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122050|ref|XP_002318739.1| predicted protein [Populus trichocarpa] gi|222859412|gb|EEE96959.1| predicted protein [Populus trichocarpa]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/343 (77%), Positives = 291/343 (84%), Gaps = 10/343 (2%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 88  KDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 147

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+WGTSIS PNTFIETLRERMFRP+L
Sbjct: 148 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSISVPNTFIETLRERMFRPAL 207

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE SKVVT+SP++TVL+ TKKMLE R   AVVTV+ KPRGI TSKDILMRVI+QNL
Sbjct: 208 STIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVVTVDEKPRGIFTSKDILMRVIAQNL 267

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P DSTLVEKVMTPNPECATIDTPIVDALH MHDGKFLHLPVVDRDG++V V+DVIHITHA
Sbjct: 268 PPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVVDRDGNIVAVIDVIHITHA 327

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKF-------ASEGAD 294
           AVATVGN  G+NNE ASTMMQKFWDSAMA+SPNDDE++ R    L         +S G  
Sbjct: 328 AVATVGNATGANNETASTMMQKFWDSAMAMSPNDDEDETRRLDVLVLILSKILISSTGFT 387

Query: 295 TARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 337
              Y S   PS G+P+ F+FK++D KG MHRFTC      + I
Sbjct: 388 ---YTSLLYPSSGLPNNFSFKIEDKKGRMHRFTCETRSLTDLI 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126564|ref|XP_003564957.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Brachypodium distachyon]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/327 (77%), Positives = 287/327 (87%), Gaps = 2/327 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDI TRVIAREL LE+TPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 109 KDITTRVIARELKLEDTPVSKVMTRNPLFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 168

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGT++SGPNTF+ETLRERMFRPSL
Sbjct: 169 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTAVSGPNTFVETLRERMFRPSL 228

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STII E SKVVT++PTDTVL A+KKMLEL++SSAVV +ENKP GILTS+DILMRVI+QNL
Sbjct: 229 STIISENSKVVTVAPTDTVLTASKKMLELKVSSAVVAIENKPGGILTSRDILMRVIAQNL 288

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           P +ST VEKVMT +PECAT DTPI++ALH MHDGKFLHLPV+D DG+VV V+DV+HITHA
Sbjct: 289 PPESTTVEKVMTQSPECATTDTPILEALHTMHDGKFLHLPVLDSDGNVVTVIDVLHITHA 348

Query: 242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
           A+ATVGN+  + +EA S+MMQ+FWDSAM+  P DD++D+RSEGS K ASE  D  R   Y
Sbjct: 349 AIATVGNSGAAGSEATSSMMQRFWDSAMSSGPLDDDDDSRSEGSTKVASEATDIGRSTFY 408

Query: 302 PSPSPGVPSAFAFKVQDNKGLMHRFTC 328
             P+ G+ S F FK+QD +G MHRF C
Sbjct: 409 --PASGLSSTFGFKIQDKQGRMHRFNC 433

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863576|emb|CAN79772.1| hypothetical protein VITISV_019408 [Vitis vinifera]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/366 (74%), Positives = 293/366 (80%), Gaps = 35/366 (9%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIARELNLEETPVSKVMTRNP FVLSDTLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct: 100 KDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 159

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+WGTS+SGP+TFIETLRERMFRP+L
Sbjct: 160 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPAL 219

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
           STIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV VEN+P+GILTSKDILMRVI+QNL
Sbjct: 220 STIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNL 279

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
             +ST V  VMTPNPECATIDTPIVDALH MHDGKFLHLPV+DRDG VV V DVIHITHA
Sbjct: 280 HPESTPV--VMTPNPECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHA 337

Query: 242 AVAT------------------------------VGNTAGSNNEAASTMMQKFWDSAMAL 271
           AVAT                              VG  AG NNEAAS++MQKFWDSAMAL
Sbjct: 338 AVATVKLCLSKCCSSQQQAAKELSCFQCFIDRMQVGGNAGVNNEAASSLMQKFWDSAMAL 397

Query: 272 SPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGML 331
             +DDEE  RSEGSLK ASEG +  R L Y S +  + + FAFK++D +G MHRFTC   
Sbjct: 398 GTDDDEE-TRSEGSLKLASEGTEIGRTLPYTSSA--MHNTFAFKIEDKRGRMHRFTCDTR 454

Query: 332 PFPNFI 337
              + I
Sbjct: 455 SLTDVI 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511510|ref|XP_003524468.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/328 (78%), Positives = 291/328 (88%), Gaps = 3/328 (0%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KDIATRVIARE+NLEETPVSKVMTRNP FVLSDT AVEALQKMVQG+FRHLPVVENGEV+
Sbjct: 100 KDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTRAVEALQKMVQGRFRHLPVVENGEVV 159

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN-TFIETLRERMFRPS 120
           A+LDIAKCLYDAIARMERAAEKGKAIAAAVEG+EKHWGTS    N TF+ETLRE++F+PS
Sbjct: 160 AILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTSTPASNSTFMETLREQIFKPS 219

Query: 121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 180
           LSTIIPE SKVVT+SPTD+VL  TKKMLELR SSAVVT+++KP GILTSKDILMRVI+Q+
Sbjct: 220 LSTIIPENSKVVTVSPTDSVLTTTKKMLELRASSAVVTIDDKPCGILTSKDILMRVIAQS 279

Query: 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240
           LP  STLVEKVMTPNPEC TIDTPIVDALH MHDGKFLHLPVV+R G VV  VDVIHITH
Sbjct: 280 LPPSSTLVEKVMTPNPECGTIDTPIVDALHTMHDGKFLHLPVVNRGGIVVATVDVIHITH 339

Query: 241 AAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLS 300
           AAVATVGNT   NNEAA++M+QKFWDSAMAL+PN+++ED++SE SLK  SEG +T R +S
Sbjct: 340 AAVATVGNTPNFNNEAANSMIQKFWDSAMALAPNEEDEDSQSEASLKMISEGGETGRSIS 399

Query: 301 YPSPSPGVPSAFAFKVQDNKGLMHRFTC 328
           Y + S  + + F+FK+QD KG +HRFTC
Sbjct: 400 YLTSS--MQNVFSFKLQDRKGRLHRFTC 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.916	0.583	0.658	5.7e-107
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.791	0.411	0.334	6.1e-33
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.904	0.517	0.284	7.7e-28
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.641	0.304	0.215	5.4e-20
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.210	0.5	0.36	1.7e-05
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.291	0.701	0.288	0.00011
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.291	0.701	0.288	0.00011
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.135	0.223	0.404	0.00024
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.135	0.223	0.404	0.00024
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	0.242	0.407	0.303	0.0006

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 214/325 (65%), Positives = 248/325 (76%)

Query:     2 KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
             KDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLAVEALQKMVQGKFRHLPVVENGEVI
Sbjct:   103 KDIATRVISQELNVEETPVSKVMTKNPMFVLSETLAVEALQKMVQGKFRHLPVVENGEVI 162

Query:    62 ALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXHWGTSISGPNTFIETLRERMFRPSL 121
             ALLDIAKCLYDAIARMER                  WGT+ S PNTFIETLR+RMFRPSL
Sbjct:   163 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKSWGTNTSVPNTFIETLRDRMFRPSL 222

Query:   122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
             STIIP+ +KV+ +SPTDTVL   KKM+E + S AVV +E+K RGI TSKDILMRV+++NL
Sbjct:   223 STIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVVIIEDKLRGIFTSKDILMRVVAENL 282

Query:   182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPXXXXXXXXXXXXXXIHITHA 241
             P   TLVE VMT NPE   +DTPIV+ALHIMH+GKFLHLP              IH+THA
Sbjct:   283 PPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKFLHLPVTDKEGDVVAVVDVIHVTHA 342

Query:   242 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 301
             AVAT G TAG  NEA +TMMQKFWDSAMALSPN+D+ED+RSE S+K ASE A+T +  S+
Sbjct:   343 AVATAGTTAGIGNEATNTMMQKFWDSAMALSPNEDDEDSRSESSMKVASE-AETGK--SF 399

Query:   302 PSPSPGVPSAFAFKVQDNKGLMHRF 326
             P       + F+FK++D K   HRF
Sbjct:   400 P-----FANTFSFKIEDKKHRKHRF 419

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 366 (133.9 bits), Expect = 6.1e-33, P = 6.1e-33
 Identities = 96/287 (33%), Positives = 147/287 (51%)

Query:     2 KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEV 60
             KD+A RV+   L   +  VS++MT+NP    +DT A +AL  MV+  FRHLPV+ EN ++
Sbjct:   156 KDLAFRVVGAGLKARDITVSEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDI 215

Query:    61 IALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXHWGTSISGPNT-FIETLRERMFRP 119
               +LDI KC YDA+ ++ER                   G+S       ++E LR +M  P
Sbjct:   216 SGVLDITKCFYDAMEKLERAYSSSRKLYDALEGVQSELGSSQPQQIIQYVEALRSKMSGP 275

Query:   120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 179
             +L +++ +     T+S   TV  A   M E   ++ +V  +    GI TSKDI++RVI+ 
Sbjct:   276 TLESVL-DGMPPTTVSVRTTVKEAAALMKEHHTTALLVQDQGSITGIFTSKDIVLRVIAP 334

Query:   180 NL-PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPXXXXXXXXXXXXXXIHI 238
              L PA  ++V +VMTP+P+ A  D  I  AL  MHDG +L+LP              + +
Sbjct:   335 GLDPATCSVV-RVMTPHPDFAPSDMSIQAALRKMHDGHYLNLPVMNEGGEIVGMVDVLKL 393

Query:   239 THAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGS 285
             T+A +  + + +  ++E  +    KFW S       D E D+   GS
Sbjct:   394 TYATLEQINSMSTQDDEGPA--WNKFWLSM------DHESDSMVSGS 432

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 318 (117.0 bits), Expect = 7.7e-28, P = 7.7e-28
 Identities = 96/338 (28%), Positives = 152/338 (44%)

Query:     2 KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEV 60
             KD+A R++   LN  +  +  +MT+NP    +   A +AL  MV+  FRHLPV+ E  ++
Sbjct:    97 KDVAFRIVGSGLNATQVTIDTIMTKNPICANAADPAGDALNLMVERGFRHLPVLDEKSQI 156

Query:    61 IALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXHWGTSISGPNTF--IETLRERMFR 118
             + +LDI K     + ++ER                   G      + F   ETL+ +M  
Sbjct:   157 VGVLDITKSYAQQMEKLERMHSSSKKLHEALDSVHNEIGVGEQPHHVFQYFETLKNKMNG 216

Query:   119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVI 177
             P+L   +   +    ++   +V  AT  M E R ++ +V   N+   GI TSKD+++RVI
Sbjct:   217 PTLEDALDANTVPTYVNVKASVHEATMLMKENRTTAVLVKDTNEQVAGIFTSKDVVLRVI 276

Query:   178 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPXXXXXXXXXXXXXXIH 237
             +  L      V +VMTP P+ A I  P+ DAL  M DG +L+LP              + 
Sbjct:   277 AAGLDPKKCSVVRVMTPQPDVAPIGLPVQDALRKMFDGHYLNLPVVANEGDIIGVVEVLK 336

Query:   238 ITHAAVATV----------GNTA-GSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSL 286
             +TH  +  +          G+TA  S NE  +    KFW S   L   D + ++    SL
Sbjct:   337 LTHITLNQIKQLETSETSNGSTAVDSTNEGPA--WNKFWTS---LDNTDGDTESAHSDSL 391

Query:   287 KFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMH 324
                S G+ TA     P  +P    +F   ++ +  + H
Sbjct:   392 METSRGSATA-----PDITPSEFHSFNVDIKPSDSVSH 424

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 152 (58.6 bits), Expect = 5.4e-20, Sum P(3) = 5.4e-20
 Identities = 52/241 (21%), Positives = 97/241 (40%)

Query:    56 ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXHW----------GTSISGP 105
             + G+VI ++++  CL + + R+ R                              +S+SG 
Sbjct:   177 DEGDVIGIINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGN 236

Query:   106 NT-----FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE 160
             +      ++E+L+++     + ++I    +   +    TV  AT+ M    +S+ +V   
Sbjct:   237 HAAEFLEYVESLKKKASGLEIMSLIDSSEEPFLVGTRTTVAEATESMARSGVSAVLVMDN 296

Query:   161 NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 220
                 G+ T+ D+++RV++  L    + V +VMTP+P+CA     +  AL  M +GKF +L
Sbjct:   297 GAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVMTPHPDCALASLRVSTALERMIEGKFSNL 356

Query:   221 PXXXXXXXXXXXXXXIHITHAAVATVGNTAG----SNNEAASTMMQKFWDSAMALSPNDD 276
             P               H+  A   T          + N+A       F D    L  N +
Sbjct:   357 PVVDESDAIIGMLSLFHLATAIEQTPEEEEEVFDQAENDAGIEPSNGFEDQQQQLLGNSN 416

Query:   277 E 277
             E
Sbjct:   417 E 417

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 107 (42.7 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 27/75 (36%), Positives = 41/75 (54%)

Query:     2 KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQK-MVQGKFRHLPVVENGEV 60
             +D A +VI +  +   TPV ++M+ N    +    +VEA    M     RHLPVVE+G +
Sbjct:    57 RDYARKVILKGRSSVGTPVREIMS-NKVITVDSQQSVEACMGIMTDSHLRHLPVVEDGRL 115

Query:    61 IALLDIAKCLYDAIA 75
             + LL I   + +AIA
Sbjct:   116 LGLLSIGDLVKEAIA 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query:   121 LSTIIPEKSK--VVTISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVI 177
             +  I+  K+   VVT+S   TV  A   + E R+ + VV+ + +  +GIL+ +DI+  + 
Sbjct:     3 VQAILKSKASDGVVTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQGILSERDIVRELA 62

Query:   178 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 221
             +      S  V   MT +      D  + D L  M +G+F H+P
Sbjct:    63 ASGSGCLSEPVSTYMTKDLITCGRDAKVQDVLSQMTEGRFRHMP 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query:   121 LSTIIPEKSK--VVTISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVI 177
             +  I+  K+   VVT+S   TV  A   + E R+ + VV+ + +  +GIL+ +DI+  + 
Sbjct:     3 VQAILKSKASDGVVTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQGILSERDIVRELA 62

Query:   178 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 221
             +      S  V   MT +      D  + D L  M +G+F H+P
Sbjct:    63 ASGSGCLSEPVSTYMTKDLITCGRDAKVQDVLSQMTEGRFRHMP 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 78 (32.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query:   128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM 174
             + +VVT  P D V  A K MLE R+    V ++++  GI+T  DI+M
Sbjct:    78 QKRVVTAHPLDPVEEAAKMMLENRVGCLPVLLDDELVGIITQGDIVM 124

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 78 (32.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query:   128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM 174
             + +VVT  P D V  A K MLE R+    V ++++  GI+T  DI+M
Sbjct:    78 QKRVVTAHPLDPVEEAAKMMLENRVGCLPVLLDDELVGIITQGDIVM 124

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00060, P = 0.00060
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query:   138 DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 194
             DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct:    79 DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query:   195 NPECATI--DTPIVDALHIMHDGKFLHLP 221
               +  T+  +T ++ A+ +M D +  H+P
Sbjct:   139 ENKLITVTPETKVLRAMQLMTDNRIRHIP 167

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0DH79	Y5064_ARATH	No assigned EC number	0.7347	0.9219	0.5821	yes	no
Q0WLC7	Y5053_ARATH	No assigned EC number	0.7347	0.9219	0.5821	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017958001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (541 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-50
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	4e-26
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	7e-23
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-22
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-21
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-20
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	6e-16
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-14
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-14
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-14
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	3e-13
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-12
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-12
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	4e-12
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	5e-12
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	5e-12
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	8e-11
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-10
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-10
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	1e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	7e-10
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-09
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	2e-09
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-09
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	4e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	5e-09
pfam00571	57	pfam00571, CBS, CBS domain	6e-09
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	8e-09
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	1e-08
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-08
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-08
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-08
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	3e-08
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	4e-08
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	5e-08
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	6e-08
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	9e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	1e-07
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	1e-07
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	2e-07
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-07
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	3e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-07
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	4e-07
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-07
pfam00571	57	pfam00571, CBS, CBS domain	2e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-06
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	3e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	3e-06
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	3e-06
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	7e-06
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	8e-06
pfam00571	57	pfam00571, CBS, CBS domain	9e-06
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	9e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-05
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-05
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	1e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	1e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	5e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	7e-05
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	8e-05
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-04
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	2e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-04
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	3e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-04
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	4e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	4e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-04
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	5e-04
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	6e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	7e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.001
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.001
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.001
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.001
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.002
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.002
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.002
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.002
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.002
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	0.002
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	0.003
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	0.003
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	0.003

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  163 bits (414), Expect = 3e-50
 Identities = 65/113 (57%), Positives = 82/113 (72%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
           +K  T+SPT TV  A K M E R+S  +V   NK  GI TSKDI +RV++Q L  +STLV
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLV 60

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           E+VMTPNP CAT DTP+++ALH+M  GKF HLPVVD+ G VV ++DV  +THA
Sbjct: 61  ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  100 bits (251), Expect = 4e-26
 Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEV 60
           KDIA RV+A+ L+ E T V +VMT NP    SDT  +EAL  MVQGKFRHLPVV ++G+V
Sbjct: 42  KDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQV 101

Query: 61  IALLDIAKCLYD 72
           + LLD+ K  + 
Sbjct: 102 VGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 91.4 bits (228), Expect = 7e-23
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
             VT SP  T+  A + M E R+SS +V  + +  GI+T +D+  RV+++ L  D T V 
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPD-TPVS 60

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           +VMT  P     D  + +AL +M +    HLPVVD DG +V V+
Sbjct: 61  EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVI 103

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 89.9 bits (224), Expect = 3e-22
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 188
            V+T+ P  TV  A K M E  + + VV     +  GI + +DI+ +V  +   A  T V
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPV 61

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            ++MT N    T D  + +A+ +M + +F HLPVVD  G +V +V
Sbjct: 62  SEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 87.9 bits (219), Expect = 1e-21
 Identities = 36/105 (34%), Positives = 58/105 (55%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
             VVT+SP DT+  A + M E  + +  V   ++  GI+T +DI++R +++    D+T V
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTV 60

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             VMT      T D  + +A  +M + +   LPVVD DG +V +V
Sbjct: 61  GDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 84.0 bits (208), Expect = 4e-20
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 187
             VVT+SP DTV  A + MLE  +S   V  ++ +  GI+T +D+ +R +++        
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDL-LRALAEGGLDPLVT 59

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           V  VMT +    + DT + +A  +M +     LPVVD +G +V +V
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 72.5 bits (178), Expect = 6e-16
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
              V+T+ P  +V  A   M E  +S+  V  + K  GI+T +DIL  + +         
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG--KRLLP 63

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDG-KFLHLPVVDRDGDVVDVVDVIHIT 239
           V++VMT        DTP+ +AL +M +  K   LPVVD DG    +V +I ++
Sbjct: 64  VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG--KLVGIITLS 114

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.7 bits (169), Expect = 1e-14
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIA 62
           DI  +V  R  +  +TPVS++MTRN   V  D    EA+  M + +FRHLPVV+ G+++ 
Sbjct: 44  DIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVG 103

Query: 63  LLDI 66
           ++ I
Sbjct: 104 IVSI 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 68.7 bits (169), Expect = 1e-14
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
           ++T  P  ++  A  +M E R+SS VV  + +P GI+T +DIL R+++      + + E 
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPDLQTPVGE- 60

Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 237
           VM+        DT + DA  +M +    HL VVD DG+++ ++   D++ 
Sbjct: 61  VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---------Q 179
             V+T+SP D V  A + ML+  +S   V    K  GI+T KDI   + S         Q
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQ 60

Query: 180 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                +  V  +MT        DT + D   +M +     LPVVD DG +V +V
Sbjct: 61  ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-DGKLVGIV 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 65.2 bits (160), Expect = 3e-13
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +D+  RV+A  L+ + TPVS+VMT  P  +  D    EAL  M++    HLPVV++G ++
Sbjct: 42  RDLRNRVVAEGLDPD-TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDDGRLV 100

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL 187
             VVT+ P  ++  A K M E  + S VV   + +P GI+T +DI+ R ++  +    T 
Sbjct: 1   RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTP 58

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           V ++MT +      D P+ +A  +M      H  VVD+ G++V V+
Sbjct: 59  VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ---------N 180
             +T++P  +++ A K M E  +    V    K  GI+T +D+ +   S+          
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELY 61

Query: 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                  V  +MT +P   + D  + +A  +M + K   LPVVD  G +V ++
Sbjct: 62  YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 21/125 (16%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL- 187
            V+T+   DT+    + +L  ++S   VV  E +  GI++  D++ ++         TL 
Sbjct: 2   DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLL 61

Query: 188 ------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 229
                             VE++MT        DT I D   IM       LPVVD DG +
Sbjct: 62  YSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKL 120

Query: 230 VDVVD 234
           V ++ 
Sbjct: 121 VGIIS 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLVEK 190
           + +SP  ++L A +K+ +  L   +V  EN +  G +T  DI  R + + L  D   V +
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDI-RRALLKGLSLDDP-VSE 62

Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV 232
           VM  NP  A + +   + L +M +    HLP++D +G VV +
Sbjct: 63  VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGL 104

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
           V+T+ P  TV  A   M E  +   +V    KP GI+T +D++ +V+S+NL      V +
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 239
           VM+        +  + +A  +M       LPVVD D ++V +V    I 
Sbjct: 63  VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPAD--- 184
           S VVT+S  D++  A + M E R+    VV  + K  G+LT +D+L   +S         
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 185 -----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                   V +VM  +    T DTP+ +A  IM + K   LPVVD  G +V ++
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 138 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 197
           D +L  ++K L +   +AVV  + +  GI T  D L R + + L   +  V  VMT NP+
Sbjct: 15  DALLEMSRKGLGM---TAVVDEDGRLVGIFTDGD-LRRALEKGLDILTLPVADVMTRNPK 70

Query: 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 237
               D    +AL +M + K   LPVVD +G  V V+  IH
Sbjct: 71  TIDPDALAAEALELMEENKITALPVVDDNGRPVGVLH-IH 109

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLD 65
           R + + L++   PV+ VMTRNP  +  D LA EAL+ M + K   LPVV +NG  + +L 
Sbjct: 48  RALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLH 107

Query: 66  I 66
           I
Sbjct: 108 I 108

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 188
             VT+SP  ++  A +KM +  +SS VV        GI+T KD+  RVI+         V
Sbjct: 158 PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK-V 216

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 238
            +VMT           + +A+ +M   +  HLPV + DG  + ++ +  I
Sbjct: 217 SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDI 265

Length = 610

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
            +T+SP  TV  A + M E  +S   VV  + K  GI+T++D  +R  +         V 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRD--LRFETD----LDKPVS 57

Query: 190 KVMTPNPECAT-IDTPIVDALHIMHDGKFLHLPVVDRDG 227
           +VMTP     T   T + +AL ++H+ K   LPVVD +G
Sbjct: 58  EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG 96

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL------PA 183
           +VVT+   D +    +   + +    +V  +N+  G+++ +D L + IS  L        
Sbjct: 2   RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEK 60

Query: 184 D----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           D    +    ++MT +P   + DTP+ +A  ++ +     LPVVD +G ++ ++
Sbjct: 61  DLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
             + +  + ++  A + M E    + +V   +   GI+T  D+L  V+   LP+ ST V 
Sbjct: 2   PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS-STPVG 60

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 234
           ++ T        D  + +AL +M   + +H  VV   G+VV V++
Sbjct: 61  EIATFPLITVDPDDFLFNALLLMTRHR-IHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE--- 59
           DI  R +A   + + T V  VMTR    V  D    EA + M + + R LPVV++     
Sbjct: 43  DIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLV 102

Query: 60  -VIALLDIAKC 69
            +++L D+A+ 
Sbjct: 103 GIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRV-------ISQNLP 182
           VVT++P  ++  A   +   R+ +  VV  + +  GI+T +D+L          +   L 
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR 63

Query: 183 ADST--LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                  V  +M+P       DTPI + + ++ DG   H+PVVD D  +V +V
Sbjct: 64  GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIV 116

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 187
           + VVT+SP  +V  A + ML+  +S   VV  + +  GI++  D+L R         +  
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARW 61

Query: 188 ---------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 226
                                V  VMT        DTP+ +   +M + +   +PVV R 
Sbjct: 62  LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV-RG 120

Query: 227 GDVVDVV 233
           G +V +V
Sbjct: 121 GRLVGIV 127

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           V+ +MTP+      DT + +AL +M +     LPVVD DG +V +V +  +  A
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL---------MRVIS 178
             VVTI+PT T+  A + M E ++    VV  E +  GI+T +D+          +    
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 179 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV--VDVVDVI 236
             L      V+++MT +         + +A  +M + +   LPVV+    V  +   D++
Sbjct: 61  LYLLLKMP-VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119

Query: 237 HI 238
             
Sbjct: 120 RT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 133 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 192
           T++P   +  A   M E  L S VV    +  G+LT +++L  +         T V  +M
Sbjct: 5   TVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIM 64

Query: 193 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            P P  A+ D  I +   +M +    +LPV+D  G ++ V+
Sbjct: 65  NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
             VVTIS   ++  A K M+E  ++   VV  + +  GI+TS D     IS+ +  D   
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-----ISKAVARDKKS 56

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 239
           VE +MT N   AT D PI  A   M       LPVVD +  V+ ++    I+
Sbjct: 57  VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 20/112 (17%)

Query: 132 VTISPTDTVLMATKKMLELR----LSSAVVTVENKPR----GILTSKDILMRVISQNLPA 183
             +SP  TV      +LE++     SS ++TV+ K      GI+TS+DI        +  
Sbjct: 107 YVLSPNHTV----ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID------FVKD 156

Query: 184 DSTLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 233
            ST V +VMTP  +    +TPI   +A  ++ + +   LP+V+ +G++V +V
Sbjct: 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208

Length = 495

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
             K++T+ P DT+  A K   E  +  A V  ++K  GI+T  DI   + + NL A    
Sbjct: 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAK--- 235

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           V   M  N      D  I DA+ +M+      L V D +G  V ++
Sbjct: 236 VSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII 281

Length = 294

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 188
             VTI+P  T+  A K M + ++ S +V   +NK  GI++ + +      +    ++  +
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSL 56

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           E +M  +      D  + D L ++      ++PVVD DG +V ++
Sbjct: 57  EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 133 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKV 191
           T++P   V  A   M +   SS V+ VE     GI T +DI+ R+ +         + +V
Sbjct: 5   TVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEV 63

Query: 192 MTPNPECATID--TPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           MT             I  AL +    +  HLPV+D  G ++ +V
Sbjct: 64  MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMR--------VISQN 180
           + VT +P D V      MLE   +   VV    +  GI+T +DI+             + 
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRT 61

Query: 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 234
               S  VEK+M+      T D  I  A+ +M +     LPVV+    +V +VD
Sbjct: 62  QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVD 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
             VVT+    TV      M   R     V  + +  GI+T  DI  R +       + LV
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADI--RRVPAEGREATVLV 58

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             VMT +P  A+ D  + DAL  M +     LPVVD  G +V +V
Sbjct: 59  GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-----GILTSKDILMRVISQNLPAD 184
            VVTI    TV  A + M E  +SS VV    K R     GI+T +DIL +V+++    D
Sbjct: 2   NVVTIDGLATVAEALQLMKEHGVSSLVV---EKRRESDAYGIVTMRDILKKVVAEGRDPD 58

Query: 185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
              V ++MT      + D  I     +M        PVV+ + +++ ++ +  I  A
Sbjct: 59  RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPAD 184
           S  VTISP  TV    + M    +S   V  +        GI+T +DI      + +   
Sbjct: 88  SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI------RFVKDK 141

Query: 185 STLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
              V +VMT            + +AL ++H+ +   LPVVD++G++V ++
Sbjct: 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLI 191

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
            V+T+SP +TV    K + E       V    K  GI++++D+L +            VE
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK-------DPDETVE 55

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 236
           ++M+ +   A  +  I+DA  +M       LPVVD + ++V ++   DVI
Sbjct: 56  EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLD 65
           R + + L+L+  PVS+VM RNP      +   E L  M +   RHLP++ E G V+ L  
Sbjct: 48  RALLKGLSLD-DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLAT 106

Query: 66  I 66
           +
Sbjct: 107 L 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           KD+ +RVIA +   +   VS+VMT     V       EA+  M++ + +HLPV E+G+ +
Sbjct: 199 KDLRSRVIA-DGRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPL 257

Query: 62  ALLDIAKCL 70
            +L +   L
Sbjct: 258 GILTLTDIL 266

Length = 610

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 131 VVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
            VT++P  T+  A   M    +S   VV    K  GI+T++D  +R  +      S  V 
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD--VRFETD----LSQPVS 150

Query: 190 KVMTPN-----PECATIDTPIVDALHIMHDGKFLHLPVVDRDG 227
           +VMT       PE  T++    +AL ++H+ +   LPVVD +G
Sbjct: 151 EVMTKERLVTVPEGTTLE----EALELLHEHRIEKLPVVDDNG 189

Length = 486

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIA 62
           R +A  ++L+ TPVS++MTR+   V  D    EA + M +   RH  VV+ G     VI+
Sbjct: 47  RAVAAGIDLD-TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVIS 105

Query: 63  LLDIAKC 69
           + D+ + 
Sbjct: 106 IRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 39/155 (25%)

Query: 26  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDAIARMER- 79
           ++   V   T  +EA + MV+  FR LPVV+ G      +I   DI K L       E+ 
Sbjct: 1   KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKF 56

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
              K      A+                  E +R  M              V+TI+P D+
Sbjct: 57  NKIKTGNGLEAIN-----------------EPVRSIM-----------TRNVITITPDDS 88

Query: 140 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 173
           +  A + MLE R+    VV  + K  GI+T +D+L
Sbjct: 89  IKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL---MRVISQNLPADS- 185
           VVT+S   ++  A K + E R+ +  V  E+ +  GI+T +D+L        Q L     
Sbjct: 255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRP 314

Query: 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 237
             V+ +MT        DTP V+ +  + D     LPV+D  G +V +V   D+I 
Sbjct: 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-- 59
           +D+  R +A         V  VMTR+   V  DT   EA + M++   R LPVV++    
Sbjct: 43  RDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRL 101

Query: 60  --VIALLDIAK 68
             ++   DI +
Sbjct: 102 VGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 72
          V  +MT +   V  DT   EAL+ M +     LPVV E+G+++ ++   D+ + L +
Sbjct: 1  VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 132 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST-LVE 189
           VT +P  +V  A +K+L+ ++S   VV       G L+ +D L +++  +   D    V 
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            +MT      + D  IVD   +M   K    PVVD DG +V  +
Sbjct: 64  DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVT--VENKPRGILTSKDILMRVISQN------- 180
            VVT+ PT  ++ A K M+        V      K  GI+T+ DIL  +           
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT 61

Query: 181 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
              L A +  V  +MT N    T D  I DA  +M + +   LPVVD DG +V +V
Sbjct: 62  GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIV 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
           VV+++P DTV  A ++M E  +S   V  + +  G +   D+L  +I       S  V +
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-AKFSLPVRE 61

Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 236
           VM         D PI +   ++  G      VVD  G  V ++   D++
Sbjct: 62  VMGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLL 108

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV---VDVIHI 238
            A  DTP++D L ++ + +   LP+VD +G VVDV    DVI++
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 133 TISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQNLPADST 186
            +    TV  A + +              VV  E +  G+++ +D+L+           T
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------DPDT 53

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 236
            V  +M  +    + D    +   +      L LPVVD +G +V      DV+DVI
Sbjct: 54  PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
               ++ TDTV    +   E   S   VV  +NK  GI+TSKD+  +          T +
Sbjct: 3   DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTI 55

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 236
           EKVMT NP      T +    H+M       LPVVD +  ++ ++   DV+
Sbjct: 56  EKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 1   MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE-ALQKMVQGKFRHLPVVENGE 59
           M+DI  +V+A   + +   V ++MT+ P   +S  + ++   + M +   R  PVVEN E
Sbjct: 43  MRDILKKVVAEGRDPDRVNVYEIMTK-PLISVSPDMDIKYCARLMERTNIRRAPVVENNE 101

Query: 60  VIALLD 65
           +I ++ 
Sbjct: 102 LIGIIS 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 178
             VVT+ P  ++  A + M E  +S   V  E+ K  GI+T +D+L  ++ 
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
           +  VT+SP  TV  A +      +S   VT + K  G L        +           V
Sbjct: 90  TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDI----DFLSKVSV 145

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
              MT +   A     + +A  I+H+ K   LP+VD DG++V ++
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLI 190

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 41/150 (27%)

Query: 26  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERAAEKG 84
           R+   V  D    EAL+ M++     LPVV ++G ++ ++       D +  +       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER----DLLRALAE----- 51

Query: 85  KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 144
                              G    + T+ + M R            VVT+SP  ++  A 
Sbjct: 52  -------------------GGLDPLVTVGDVMTRD-----------VVTVSPDTSLEEAA 81

Query: 145 KKMLELRLSS-AVVTVENKPRGILTSKDIL 173
           + MLE  +    VV  E +  GI+T  DIL
Sbjct: 82  ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 30/129 (23%)

Query: 46  QGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105
           + KF HL VVE+ E++ ++     L              KAI+  +         +    
Sbjct: 21  KHKFHHLLVVEDNELVGVISDRDYL--------------KAISPFLG--------TAGET 58

Query: 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR 164
              + TL  R        I+      +T+SP   V  A+K +LE  +S   VV    +  
Sbjct: 59  EKDLATLNRRA-----HQIM--TRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLI 111

Query: 165 GILTSKDIL 173
           GI+T KD+L
Sbjct: 112 GIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 132 VTISPTDTV--LMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADS 185
             +SP  TV  ++  K+  +   S   VT + K      GI+TS+DI        L    
Sbjct: 5   SVLSPDHTVADVLEIKE--KKGFSGIPVTEDGKSGGKLLGIVTSRDI------DFLTDSE 56

Query: 186 TLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 233
           T + +VMTP        T I   +A  I+ + K   LP+V+ DG++V +V
Sbjct: 57  TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALV 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 133 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDI---LMRVISQNLPADSTLV 188
            I+PT +   A  +M E RL SA+V  EN    G+ T  D+   L+   S         V
Sbjct: 168 LIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSE-----V 222

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
              MT  P+   +D  +++AL  +   K   L VVD    V+ V+
Sbjct: 223 RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 14  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIA 67
           N EE  ++ +MTR+P  V  D    EA + MV+   R +PVV++G+++ ++ +A
Sbjct: 48  NPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVA 101

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
            ++T++P  T+  A +      +  A V  + K  GI+T  DI    I++ L      V+
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVK 58

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 238
            VMT +      D  + DA+ +M+      L V D +G  V ++   D++  
Sbjct: 59  DVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 35/143 (24%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN------LP 182
              +T +  DT+  A + + E ++S A V    K  GI++  DIL  +++ +      LP
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 183 -------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 217
                                    A    V  +MT      + D  I DA  +M   K 
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 218 LHLPVVDRDGDVVDVV---DVIH 237
             LPVV+ DG +V +V   D+I 
Sbjct: 121 KRLPVVE-DGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 41/243 (16%)

Query: 17  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYD 72
           +  V  +    P  V  DT   EA   M +   + LPVV+       +++L D+A+   D
Sbjct: 67  KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126

Query: 73  A--IARMERAAEKGKAIAAAVEGVEKHWGTSISG-PNTFIETLRER---MFRPSLSTIIP 126
                 + ++    + I   ++      G  + G     +E  +     M   SL   I 
Sbjct: 127 ILDPEILSKSPTSLENIIRTLD------GEVLVGAEEDKVEEGKVVVAAMAPESLLERIE 180

Query: 127 EKSKVVTISPTDTVLMATKKMLELRLSSAVVT--------VENKPRG-----ILTSKD-- 171
           E   V+     D  L A    +E  +   ++T        V    +      I T  D  
Sbjct: 181 EGDIVIVGDREDIQLAA----IEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTF 236

Query: 172 ILMRVISQNLPADSTLVEKVM-TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
              R+I+Q++P     V  +M T +    + D  + D   +M   ++   PVVD DG VV
Sbjct: 237 TTARLINQSIP-----VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVV 291

Query: 231 DVV 233
            V+
Sbjct: 292 GVI 294

Length = 546

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 114 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSK 170
           ERM    +   +   S V+T SP D+V  A  +MLE   SS VV     + K  GILT K
Sbjct: 66  ERMLDLPVYDAM--SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123

Query: 171 DILMR 175
           D+L  
Sbjct: 124 DVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 1   MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGE 59
            +DI  R++A   +L+ TPV +VM+     V +DT   +A Q M +   RHL VV ++GE
Sbjct: 41  ERDIL-RLLASGPDLQ-TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGE 98

Query: 60  VIALL 64
           ++ LL
Sbjct: 99  LLGLL 103

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 1   MKDIATRVIA-RELNLEET--------PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRH 51
            KDIA  + + R L  +          PVS +MTR    +  DT   +    M++     
Sbjct: 41  EKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGG 100

Query: 52  LPVVENGEVI 61
           LPVV++G+++
Sbjct: 101 LPVVDDGKLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 19  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 64
            V  +MT     V  D   V+  Q M++ K +  PVV++G+++  +
Sbjct: 61  TVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GILTSKDILMRVISQNLPADST 186
            K   +     +  A  +M      +  V V++K R  GI+T  D+L   +      D  
Sbjct: 1   MKPSCVVLNTDIARAVAEMYTSGSRALPV-VDDKKRLVGIITRYDVLSYALESEELKD-A 58

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            V +VM         +  I  A  +M +     LPV+D  G V  +V
Sbjct: 59  KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
            VVTI     +      +     ++  VV  + +  GI++  DI   ++      D  + 
Sbjct: 2   DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVA 60

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 228
             +MT  P     +  + DAL    D  +  LPVVD D  
Sbjct: 61  SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG 100

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 35/139 (25%)

Query: 38  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 94
             A + M+      LPV+E G+++ ++   DIA                  A+ +    V
Sbjct: 13  SHARRLMLDHDISRLPVIEGGKLVGIVTEKDIAD-----------------ALRSFRPLV 55

Query: 95  EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 154
                               R+    +S I+     V+TI P  +V      MLE  +  
Sbjct: 56  RD-------------RHQERRIRNLPVSDIM--TRPVITIEPDTSVSDVASLMLENNIGG 100

Query: 155 AVVTVENKPRGILTSKDIL 173
             V  + K  GI+T  DIL
Sbjct: 101 LPVVDDGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 38/153 (24%)

Query: 26  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGK 85
           +NP  V  DT  +EAL+ M +   R LPVV+ G+++ ++           R  + A   K
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIV---------TDRDLKLASPSK 51

Query: 86  AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTI---IPEKSKVVTISPTDTVLM 142
           A                        TL        LS I          +T+SP  +V  
Sbjct: 52  A-----------------------TTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEE 88

Query: 143 ATKKMLELRLSSAVVTVENKPR--GILTSKDIL 173
           A + MLE ++S   V V+++ R  GI+T  D+ 
Sbjct: 89  AAELMLERKISGLPV-VDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 173
           VVT+SP  T+  A + + E  +    VV  E +  GI+T +DI+
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 49/160 (30%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 76
           V  +MT++   V  DT   +AL  M +     +PVV++G+++ ++   DI          
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL--------- 51

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 136
             RA   G      V+ V                                    VVT+ P
Sbjct: 52  --RALAAGGKRLLPVKEVMTK--------------------------------PVVTVDP 77

Query: 137 TDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDIL 173
              +  A + M+E      +  V++   K  GI+T  DIL
Sbjct: 78  DTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 51/139 (36%)

Query: 39  EALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 94
           EA + M++    HLPVV E+G ++ ++   DI+K    A+AR ++               
Sbjct: 15  EAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK----AVARDKK--------------- 55

Query: 95  EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 154
                           ++ + M R            V+T +P + + +A +KM    +S+
Sbjct: 56  ----------------SVEDIMTR-----------NVITATPDEPIDVAARKMERHNISA 88

Query: 155 -AVVTVENKPRGILTSKDI 172
             VV  EN+  GI+TS+DI
Sbjct: 89  LPVVDAENRVIGIITSEDI 107

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
           VV ++   T     + + E ++S   VV    +  GI+T KD+L          +   + 
Sbjct: 3   VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLA 55

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
            +MT +P   + D  + +A  +M +     +PVVD DG +V +V V  I  A
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSN 253
            +    + D  + +AL +M +     LPVVD DG +V +V    +  A      +   + 
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 254 NEAAST 259
            +  + 
Sbjct: 61  GDVMTR 66

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIA 62
           D+  +V++R L   E PV +VM+     +  +    EA + M +   + LPVV++ E++ 
Sbjct: 43  DLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVG 102

Query: 63  LL 64
           ++
Sbjct: 103 IV 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 37/153 (24%)

Query: 26  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAA 81
           R+   +   T   EAL+ M + K RHLPVV E G ++ ++   D+            R A
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDL------------RDA 48

Query: 82  EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL 141
                              S S   T  E     + +  +  I+     V+T+ P DTV 
Sbjct: 49  -------------------SPSPFTTLSEHELYLLLKMPVKEIM--TKDVITVHPLDTVE 87

Query: 142 MATKKMLELRLSSAVVTVENKPRGILTSKDILM 174
            A   M E R+    V  + +  GI+T  D+L 
Sbjct: 88  EAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 238
           +    + DT + +AL ++ +     LPVVD +G +V +V   D+I  
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKA 47

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
             +VVTISP  ++L A + M E ++    V  E K  GI+T   I 
Sbjct: 58  TREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
             +TI P D+V  A + M + R+    V  + K  GI+TS+D + R     L AD+ +  
Sbjct: 2   DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRD-VRRAHPNRLVADA-MTR 59

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 226
           +V+T +PE +     +++A  +M + K   LPV+   
Sbjct: 60  EVVTISPEAS-----LLEAKRLMEEKKIERLPVLRER 91

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNL----PA 183
            +V  +  T+T+  A   + +   S+  V+  E K  G ++  DIL ++           
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERL 60

Query: 184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 227
               V  VM  +      D  I + LH++ D  F  LPVVD DG
Sbjct: 61  VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LPVVDDDG 102

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 1  MKDIATR---VIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 57
          +  I +R     A    L   PV   M+ +   V  DT   E  + MV+     +PVVE+
Sbjct: 36 VVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED 95

Query: 58 GEVI 61
          G ++
Sbjct: 96 GRLV 99

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 1   MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-KFRHLPVVENGE 59
            +DI   + A    L   PV +VMT+    V  DT   EAL+ MV+  K R LPVV++  
Sbjct: 47  ERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDG 104

Length = 117

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 226
           V+ +MT +      DT + DAL +M +     +PVVD  
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG 39

Length = 117

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 43/150 (28%)

Query: 26  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGK 85
            +   V  D    E L  M   + R  PVV++G ++ ++ +                   
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTL------------------- 41

Query: 86  AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATK 145
              A +  V                T+                   VT SP +T+  A K
Sbjct: 42  ---ADIRRVP---------AEGREATVLVGDVM---------TRDPVTASPDETLRDALK 80

Query: 146 KMLELRLSSAVVTVENKPR--GILTSKDIL 173
           +M E  +    V V++  R  GI++  D+L
Sbjct: 81  RMAERDIGRLPV-VDDSGRLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAK 68
           V  VMTR+P     D    +AL++M +     LPVV++      +++  D+ +
Sbjct: 58  VGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLY 71
          +   V  DT   EAL+ + +   R LPVV E G ++ ++   DI K L 
Sbjct: 1  DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 156 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 215
           VV  + K  G+++ +D+L             L++ +M  +      D    +   +    
Sbjct: 173 VVDEKGKLLGVVSLRDLLTA-------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKY 225

Query: 216 KFLHLPVVDRDG------DVVDVVDVI 236
             L +PVVD D        + D++DVI
Sbjct: 226 DLLAVPVVDEDNRLIGIITIDDIIDVI 252

Length = 451

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 86  AIAAAVEGVEKHWGTSISGPNTFIET---LRERMFRPSLSTIIPEK----SKVVTISPTD 138
           A     EGV        SGP   I T   LR R+     S          S V+++   D
Sbjct: 172 ARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGD 231

Query: 139 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 181
            +  A   ML  R+    VT + +P GILT  DIL R+ SQN 
Sbjct: 232 FLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL-RLFSQNS 273

Length = 610

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 14  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 64
           +  +  V  +MT+    +  D    +A + MV+ K + LPVVE+G ++ ++
Sbjct: 85  DAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIV 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADS-TLV 188
           VT+SP DTV  A   +L  R   AVV V  E +P G++T  D            D  T V
Sbjct: 100 VTLSPDDTVGDALA-LLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------DRFTQV 150

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             VM+ +       T   +A  ++   +    PVVD DG +V V+
Sbjct: 151 RDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL 195

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.94
PRK11573	413	hypothetical protein; Provisional	99.93
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.93
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.91
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.91
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.86
COG2524	294	Predicted transcriptional regulator, contains C-te	99.83
COG2524	294	Predicted transcriptional regulator, contains C-te	99.82
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.77
COG3620	187	Predicted transcriptional regulator with C-termina	99.74
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.74
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.71
COG3620	187	Predicted transcriptional regulator with C-termina	99.68
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.68
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.67
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.67
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.66
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.66
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.66
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.66
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.65
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.65
COG2905	610	Predicted signal-transduction protein containing c	99.64
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.64
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.64
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.64
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.64
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.64
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.63
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.63
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.62
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.62
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.62
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.62
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.62
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.62
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.61
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.61
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.6
COG4109	432	Predicted transcriptional regulator containing CBS	99.6
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.6
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.6
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.6
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.6
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.6
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.6
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.6
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.59
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.59
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.59
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.59
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.58
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.58
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.58
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.58
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.58
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.58
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.58
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.58
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.57
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.57
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.57
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.57
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.57
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.57
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.56
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.56
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.56
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.56
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.56
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.56
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.56
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.56
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.55
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.55
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.55
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.55
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.55
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.55
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.54
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.53
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.53
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.53
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.53
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.53
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.53
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.52
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.52
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.52
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.51
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.51
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.51
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.51
COG0517	117	FOG: CBS domain [General function prediction only]	99.51
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.5
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.5
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.49
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.49
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.49
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.49
COG2905	610	Predicted signal-transduction protein containing c	99.49
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.48
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.48
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.47
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.47
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.47
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.47
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.46
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.46
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.46
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.46
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.46
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.46
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.46
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.45
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.45
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.44
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.44
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.44
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.44
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.44
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.44
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.44
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.43
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.43
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.43
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.43
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.43
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.43
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.42
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.42
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.42
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.42
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.42
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.42
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.42
PRK11573	413	hypothetical protein; Provisional	99.41
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.41
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.41
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.41
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.41
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.41
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.41
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.4
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.4
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.4
COG4109	432	Predicted transcriptional regulator containing CBS	99.4
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.4
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.4
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.39
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.39
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.39
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.39
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.39
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.39
COG0517	117	FOG: CBS domain [General function prediction only]	99.39
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.38
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.38
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.38
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.38
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.37
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.37
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.36
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.36
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.36
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.35
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.35
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.34
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.33
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.32
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.32
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.32
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.3
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.29
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.28
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.25
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.25
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.2
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.2
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.18
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.17
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.17
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.13
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.12
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.02
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.94
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.87
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.72
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.69
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.68
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.57
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.52
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.48
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.46
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.35
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.27
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.06
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.02
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.02
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.89
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.68
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.48
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.35
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.32
KOG2118	498	consensus Predicted membrane protein, contains two	97.0
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	96.68
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.63
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.43
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.23
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	89.4
KOG2118	498	consensus Predicted membrane protein, contains two	86.51

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.94  E-value=2.2e-26  Score=204.63  Aligned_cols=196  Identities=15%  Similarity=0.182  Sum_probs=163.1

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+|+.++++++++.++.++++.+.+++++++||++ + ++++|+++.+|++ ........  ...+.++| 
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~-  139 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVL-  139 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHc-
Confidence            45678999999988999999999999999999999999999998 4 7899999999997 44332211  23578888 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchH-HHHH-----------HH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE-AAST-----------MM  261 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~-~~~~-----------~~  261 (346)
                      ++++++++++++.++++.|.+++.+.+||+|++|.++|+||.+||+++++|.+.++.+...+ ....           +.
T Consensus       140 r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~  219 (292)
T PRK15094        140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS  219 (292)
T ss_pred             CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence            56679999999999999999999999999999999999999999999999999887763321 1111           11


Q ss_pred             HHHHHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCCe
Q 019128          262 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  323 (346)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~~  323 (346)
                      -.-.++.+.+..++++|+|++|++...++++|+.|+.+.+.++.        |+|.+++|+-
T Consensus       220 l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~--------f~V~~~~~~r  273 (292)
T PRK15094        220 IEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ--------FKVAMADSRR  273 (292)
T ss_pred             HHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence            22235556666676789999999999999999999999999999        9999998654

>PRK11573 hypothetical protein; Provisional

Probab=99.93  E-value=5.8e-26  Score=211.23  Aligned_cols=203  Identities=13%  Similarity=0.125  Sum_probs=165.9

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+|+.++++++.++++.++++.+.+++++++||++  .++++|+++.+|++ .....+.......+.+++ 
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~~~~~l~~~~-  261 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKENMLRAA-  261 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcCCHHHHHhhc-
Confidence            45678999999999999999999999999999999999999998  48999999999998 443322211112344555 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCch-HHH-----------HHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-EAA-----------STMM  261 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~-~~~-----------~~~~  261 (346)
                      +++.++|+++++.++++.|++++.+.+.|+||+|.+.|+||.+||+++++|++.++.+... ...           ..+.
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~  341 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN  341 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeE
Confidence            7899999999999999999999999999999999999999999999999999988765421 111           1122


Q ss_pred             HHHHHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEec
Q 019128          262 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC  328 (346)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~~  328 (346)
                      -+..+..+.+..++++|+|++|++...+|++|+.|+.+.+++|.        |+|.+++| ++.|.++
T Consensus       342 l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~--------f~V~~~~~~rI~~v~v  401 (413)
T PRK11573        342 VREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD--------IDILDVQDNMIKQVKV  401 (413)
T ss_pred             HHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEecCCeEEEEEE
Confidence            22335556666677789999999999999999999999999999        99999965 4544444

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.93  E-value=3.2e-26  Score=213.06  Aligned_cols=194  Identities=13%  Similarity=0.141  Sum_probs=160.5

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+|+.++++++.++++.++++.+.+++++++||++  .++++|+++.+|++ .....    ...++.++| 
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~-  261 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLL-  261 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHc-
Confidence            34678999999999999999999999999999999999999998  36999999999998 44332    134577888 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchHHHH-----------HHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAAS-----------TMMQ  262 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~~~~-----------~~~~  262 (346)
                      +++.++++++++.++++.|++++.+.++|+||+|.++|+||.+||+++++|++.++.+...+...           .+.-
T Consensus       262 ~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l  341 (408)
T TIGR03520       262 REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSL  341 (408)
T ss_pred             CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCH
Confidence            57899999999999999999999999999999999999999999999999999887653322111           1122


Q ss_pred             HHHHHhhcCCC---C--CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCCe
Q 019128          263 KFWDSAMALSP---N--DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  323 (346)
Q Consensus       263 ~~~~~~~~~~~---~--~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~~  323 (346)
                      +..++.+.+..   +  +++|+|++|++...++++|+.|+.+.+.++.        |+|.+++|+=
T Consensus       342 ~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~~--------f~V~~~~~~r  399 (408)
T TIGR03520       342 KDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFE--------FTIEAMDKKR  399 (408)
T ss_pred             HHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence            22344445442   2  3468999999999999999999999999999        9999997654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.91  E-value=8e-25  Score=179.11  Aligned_cols=202  Identities=14%  Similarity=0.169  Sum_probs=171.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  195 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  195 (346)
                      ...++++|.|++..+++..+.++.+++..+.+..++++||+.  .+.+.||+..+|++ +++.....  ...+.++. +|
T Consensus        66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL-RP  141 (293)
T COG4535          66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL-RP  141 (293)
T ss_pred             HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-cc
Confidence            456999999999999999999999999999999999999997  67899999999999 66554432  24566766 89


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchHHH-HHHHHHH----------
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-STMMQKF----------  264 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~~~-~~~~~~~----------  264 (346)
                      .+.+|++..+...++-|+..+.+++.|+||+|.+.|+||.+|+++.++|.|+++.+..++.- .+.....          
T Consensus       142 av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~Ie  221 (293)
T COG4535         142 AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIE  221 (293)
T ss_pred             ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHH
Confidence            99999999999999999999999999999999999999999999999999999988775422 2222222          


Q ss_pred             -HHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEecCCC
Q 019128          265 -WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTCGML  331 (346)
Q Consensus       265 -~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~g~~  331 (346)
                       ++..++-..++++++|.+|+++...|+.|..|+.+...++.        |+|...| +++|-+.+-+.
T Consensus       222 dFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~--------FkV~~ADsRrv~~l~vt~~  282 (293)
T COG4535         222 DFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ--------FKVARADSRRVIQLHVTVP  282 (293)
T ss_pred             HHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE--------EEEeecccceEEEEEEecC
Confidence             35666666778889999999999999999999999999999        9998875 67765555443

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.91  E-value=2e-23  Score=196.07  Aligned_cols=200  Identities=17%  Similarity=0.192  Sum_probs=162.9

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +..++++++|+|+.++.+++.+.++.++.+.+.+++++++||++  .++++|+++.+|++........   .......+ 
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~-  278 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV-  278 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc-
Confidence            45788999999999999999999999999999999999999999  6899999999999944443321   01111222 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchH--H----------HHHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE--A----------ASTMM  261 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~--~----------~~~~~  261 (346)
                      ++++++|+++++.++++.|++.+.|.+.|+||+|.+.|+||.+||+++++|++.++.+...+  .          ...+.
T Consensus       279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~  358 (429)
T COG1253         279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVP  358 (429)
T ss_pred             cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEecccc
Confidence            49999999999999999999999999999999999999999999999999999988875321  1          11222


Q ss_pred             HHHHHHhhcCCCC-CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEe
Q 019128          262 QKFWDSAMALSPN-DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  327 (346)
Q Consensus       262 ~~~~~~~~~~~~~-~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~  327 (346)
                      -+..++.+.+..+ +++|+|++|++...++++|..|+.+.++++.        |+|.+++| ++.|.+
T Consensus       359 l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~rI~~v~  418 (429)
T COG1253         359 LEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGRRIDKVL  418 (429)
T ss_pred             HHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCCcEEEEE
Confidence            2233555555533 3469999999999999999999999999999        99999975 454444

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.86  E-value=5.8e-22  Score=173.19  Aligned_cols=202  Identities=14%  Similarity=0.157  Sum_probs=170.5

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  194 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  194 (346)
                      .+.+|+|+|.||.++..++.+++.+++.+.+....+.++|+..  -++++|+++.+|++ +++.+........+..+. .
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a-~  275 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA-D  275 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-c
Confidence            4568999999999999999999999999999999999999997  46799999999998 777665433233333333 6


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchHHHHHHHH-----------H
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQ-----------K  263 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~~~~~~~~-----------~  263 (346)
                      +|.++|+++++.+-+..|..++-|...||||+|.+.|+||.+||+++++|.+.++++...+......+           .
T Consensus       276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iR  355 (423)
T COG4536         276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVR  355 (423)
T ss_pred             CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHH
Confidence            89999999999999999999999999999999999999999999999999998777766553333322           2


Q ss_pred             HHHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecC-CCCeEEEec
Q 019128          264 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN-KGLMHRFTC  328 (346)
Q Consensus       264 ~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~-~g~~~~~~~  328 (346)
                      -.++.+.+..|+++-.|..|++...++++|++|..+...++.        +.|.+. ++++.+.++
T Consensus       356 dlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~~~~~i~~~~--------~~Il~~~~N~I~~vri  413 (423)
T COG4536         356 DLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRIGGYR--------IDILKVQENRIKQVKI  413 (423)
T ss_pred             HHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCCeEEEEcCEE--------EEEEehhhcceeeEEE
Confidence            348899999999999999999999999999999999988888        888876 455554443

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.83  E-value=5.5e-20  Score=152.90  Aligned_cols=122  Identities=25%  Similarity=0.338  Sum_probs=112.5

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      .+.++.++|++  +++++.+++|+.++..++.++++++.||+|+++++|++|..|+. .+++++..  ...|+++|.+++
T Consensus       170 Pk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~~--~~kV~~~M~k~v  244 (294)
T COG2524         170 PKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGNL--DAKVSDYMRKNV  244 (294)
T ss_pred             CcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCCc--cccHHHHhccCC
Confidence            34568888884  89999999999999999999999999999988999999999997 77777632  679999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      +++.+++.+.||++.|..+++.++.|+|.+|+++|+||++||+..+.
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            99999999999999999999999999999999999999999998754

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.82  E-value=8.8e-20  Score=151.69  Aligned_cols=124  Identities=22%  Similarity=0.346  Sum_probs=110.8

Q ss_pred             cCCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           12 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        12 ~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      -.++.+.+|.++|+++++++++++|+++|.++|.++++++.||+|+++++|++|..|+..++..                
T Consensus       166 m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~----------------  229 (294)
T COG2524         166 MVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN----------------  229 (294)
T ss_pred             eeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc----------------
Confidence            3467889999999999999999999999999999999999999998899999999999876421                


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  170 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~  170 (346)
                                             --...+++++|.  ++++++..++.+.||+++|..+++.++.|+| +|+++|+||..
T Consensus       230 -----------------------g~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrT  284 (294)
T COG2524         230 -----------------------GNLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRT  284 (294)
T ss_pred             -----------------------CCccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehH
Confidence                                   122356888887  4899999999999999999999999999999 99999999999


Q ss_pred             HHHHHH
Q 019128          171 DILMRV  176 (346)
Q Consensus       171 dll~~~  176 (346)
                      |++.++
T Consensus       285 DIL~~i  290 (294)
T COG2524         285 DILTRI  290 (294)
T ss_pred             HHHHHh
Confidence            999444

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.77  E-value=1.1e-17  Score=162.89  Aligned_cols=216  Identities=20%  Similarity=0.229  Sum_probs=151.7

Q ss_pred             cccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        17 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      ..+|+|+|.++++++++++++.+|+++|.+++++.+||+| +|+++|+++..|+.+.+.......  ........+..+.
T Consensus        67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~  144 (546)
T PRK14869         67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII  144 (546)
T ss_pred             CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence            3689999999999999999999999999999999999999 799999999999988766543211  1111122222233


Q ss_pred             hccCCCCCChhhHHHH-HHHH----hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCC---------
Q 019128           96 KHWGTSISGPNTFIET-LRER----MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---------  161 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~-~~~~----~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~---------  161 (346)
                      +.++............ ....    +....+.+.|.+ ..++++.....+   ...+.+.++++++|+.+.         
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~l  220 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLEL  220 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence            3332222111100000 0000    000112223443 346666555544   335688899999998722         


Q ss_pred             ----EEEEEeeHHHHHHHHHhcCCCccccccccccc-cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehH
Q 019128          162 ----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI  236 (346)
Q Consensus       162 ----~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~  236 (346)
                          .+.+++|..|.+. ....-.  ...+++++|+ +++.++++++++.++.+.|.+++++.+||+|++|+++|+||..
T Consensus       221 a~~~~i~ii~t~~dt~~-t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~  297 (546)
T PRK14869        221 AKENGVTVISTPYDTFT-TARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY  297 (546)
T ss_pred             HHhCCCeEEEecccHHH-HHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence                4788999999873 332211  2679999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 019128          237 HITHA  241 (346)
Q Consensus       237 Di~~~  241 (346)
                      |+++.
T Consensus       298 dl~~~  302 (546)
T PRK14869        298 HLLSP  302 (546)
T ss_pred             Hhhcc
Confidence            99975

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.74  E-value=1.8e-17  Score=127.97  Aligned_cols=122  Identities=19%  Similarity=0.309  Sum_probs=104.9

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      ...+++.+|+.+++++.|++++.+|+++|.+++++.+||+++++++|-+|..++.+..++.++                 
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e-----------------  125 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGME-----------------  125 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhcccc-----------------
Confidence            578999999999999999999999999999999999999999999999999999987654331                 


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  175 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~  175 (346)
                                         .....+++++|..  .++++++++++..+.+++..+  .++.|+++|+++||||..|++ +
T Consensus       126 -------------------~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k  181 (187)
T COG3620         126 -------------------SIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K  181 (187)
T ss_pred             -------------------chhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence                               1223457788874  789999999999999888765  568888999999999999998 6


Q ss_pred             HHh
Q 019128          176 VIS  178 (346)
Q Consensus       176 ~~~  178 (346)
                      +++
T Consensus       182 ~~~  184 (187)
T COG3620         182 LLA  184 (187)
T ss_pred             HHh
Confidence            554

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.74  E-value=1.6e-17  Score=140.88  Aligned_cols=131  Identities=20%  Similarity=0.310  Sum_probs=114.1

Q ss_pred             CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      ....+++..|||+++++++++++++.+|.++|++|+++.+||+| +.+++|+|+.+|+++..-                 
T Consensus       240 R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~-----------------  302 (382)
T COG3448         240 RRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR-----------------  302 (382)
T ss_pred             HHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC-----------------
Confidence            35678999999999999999999999999999999999999999 689999999999986310                 


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  170 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~  170 (346)
                                    ..+.+.+. .+..++++.+|++  ++.++.++++..+++-.+.+.+.+++||+| .|+++||||+.
T Consensus       303 --------------~~p~qrlr-~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQt  365 (382)
T COG3448         303 --------------PSPFQRLR-FLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQT  365 (382)
T ss_pred             --------------cchHHHhh-ccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHH
Confidence                          02233343 5677889999984  799999999999999999999999999999 99999999999


Q ss_pred             HHHHHHH
Q 019128          171 DILMRVI  177 (346)
Q Consensus       171 dll~~~~  177 (346)
                      |++..+.
T Consensus       366 Dliaal~  372 (382)
T COG3448         366 DLIAALY  372 (382)
T ss_pred             HHHHHHH
Confidence            9984443

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-16  Score=134.46  Aligned_cols=131  Identities=26%  Similarity=0.316  Sum_probs=112.5

Q ss_pred             HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHh----cCCCccccc
Q 019128          113 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADSTL  187 (346)
Q Consensus       113 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~----~~~~~~~~~  187 (346)
                      ...+...+..+||.+  +++++++++++.+|.+.|.+++++.+||+| +.+++|+||.+|++..+-.    .-.......
T Consensus       239 ~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~  316 (382)
T COG3448         239 RRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT  316 (382)
T ss_pred             HHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence            345566778999984  999999999999999999999999999999 7899999999999842111    001112467


Q ss_pred             cccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHH
Q 019128          188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  245 (346)
Q Consensus       188 v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~  245 (346)
                      ++.+|+.++.++.++++..+++-.+.+.+.+++||+|+.|+++||||.+|++.+...+
T Consensus       317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999875443

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.68  E-value=3.3e-16  Score=120.94  Aligned_cols=120  Identities=24%  Similarity=0.285  Sum_probs=104.9

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      ..+...+|.  ++++.+.|++++.++.++|.+++++.+||+++|+++|-||..++.+..+....+..+..++++|..+++
T Consensus        64 ~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP  141 (187)
T COG3620          64 RITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFP  141 (187)
T ss_pred             eEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCC
Confidence            345788897  589999999999999999999999999999999999999999998555544455567889999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++.++..+..++..++  .+.|+ ++|+++||||..||++.+
T Consensus       142 ~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         142 TVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLL  183 (187)
T ss_pred             cCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHH
Confidence            9999999999998887765  46777 689999999999999864

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.1e-15  Score=117.52  Aligned_cols=110  Identities=24%  Similarity=0.314  Sum_probs=96.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCccccccccccccCCeeecCCCCHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVD  207 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~  207 (346)
                      .+.++++++++.++++.|.+.+...+||++ +|+++|++|.+|++ +.... .......++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   80 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD   80 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence            367899999999999999999999999998 88999999999997 44432 1122256789999999999999999999


Q ss_pred             HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +++.|.+++..++||+|++|+++|+||..|+++
T Consensus        81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.3e-15  Score=117.01  Aligned_cols=110  Identities=28%  Similarity=0.343  Sum_probs=96.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  207 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  207 (346)
                      ++.++.+++++.++++.|.+.+++.+||++ + ++++|+++.+|+++.+..........++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            478899999999999999999999999998 5 89999999999984454443333346788999889999999999999


Q ss_pred             HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.67  E-value=1.5e-15  Score=116.21  Aligned_cols=108  Identities=23%  Similarity=0.268  Sum_probs=94.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++++++++.++++.|.+.+.+.+||++ +++++|+++..|+. +....  .....++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence            467899999999999999999999999998 78999999999996 43211  111357889999899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.1e-15  Score=117.07  Aligned_cols=110  Identities=14%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-cccccc------ccccccCCeeecC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLV------EKVMTPNPECATI  201 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~-~~~~~v------~~~m~~~~~~v~~  201 (346)
                      ++.++++++++.++++.|.+++.+.+||++ +|+++|+++.+|++ .+...+.. ....++      ...|..++.++++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP   80 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence            578899999999999999999999999998 88999999999998 54433211 111112      2344566789999


Q ss_pred             CCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          202 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       202 ~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.66  E-value=1.3e-15  Score=143.38  Aligned_cols=149  Identities=24%  Similarity=0.305  Sum_probs=122.5

Q ss_pred             HHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE
Q 019128           79 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT  158 (346)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~  158 (346)
                      +.++..++++.+..+     |.++++.+-..+...+.....++.++|..  +++++.+++++.++++.|.+++++.+||+
T Consensus        53 tvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVv  125 (475)
T TIGR01303        53 AVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVI  125 (475)
T ss_pred             hhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence            333444445555555     66667666445555555556677888874  78999999999999999999999999999


Q ss_pred             eCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHH
Q 019128          159 VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI  238 (346)
Q Consensus       159 d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di  238 (346)
                      ++++++|++|.+|+. ..     .. ..+++++|+++++++++++++.++++.|.+++++++||+|++|+++|+||.+||
T Consensus       126 D~gklvGIVT~rDL~-~~-----~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DL  198 (475)
T TIGR01303       126 LEDRPVGLVTDSDLL-GV-----DR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGA  198 (475)
T ss_pred             ECCEEEEEEEHHHhh-cC-----CC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence            988999999999984 21     11 357999999999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 019128          239 THA  241 (346)
Q Consensus       239 ~~~  241 (346)
                      ++.
T Consensus       199 l~~  201 (475)
T TIGR01303       199 LRA  201 (475)
T ss_pred             HHH
Confidence            986

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.66  E-value=1.3e-15  Score=143.57  Aligned_cols=134  Identities=25%  Similarity=0.282  Sum_probs=114.5

Q ss_pred             CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHH
Q 019128           99 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  177 (346)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~  177 (346)
                      |.+.++.+-..+...+.+...++.++|..  +++++++++++.++++.|.+++++++||+| +++++|+||.+|+. .. 
T Consensus        69 GiGvih~nl~~~~q~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-  144 (479)
T PRK07807         69 GLVVLPQDIPIDVVAEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-  144 (479)
T ss_pred             CceEeeCCCCHHHHHHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence            44555554444455555666677899974  899999999999999999999999999998 78999999999994 21 


Q ss_pred             hcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          178 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       178 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                          .. ..++.++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.
T Consensus       145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~  203 (479)
T PRK07807        145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRA  203 (479)
T ss_pred             ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence                11 357999999999999999999999999999999999999999999999999999986

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.4e-15  Score=113.66  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=84.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  207 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  207 (346)
                      +++++++++++.++.+.|.+++++++||++ + |+++|++|.+|+. +...                 +.++.+++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~   63 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD   63 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence            478999999999999999999999999998 4 7999999999997 3211                 778999999999


Q ss_pred             HHHHhHhCCCceeEEEcCC-CcEEEEEehHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  240 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~-g~~~Giit~~Di~~  240 (346)
                      +++.|.+++++++||+|++ |+++|+||.+|++.
T Consensus        64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            9999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.65  E-value=4.1e-15  Score=138.79  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=124.6

Q ss_pred             HHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeeeC--CeEEEEEehHHHHHHHHHHHHHHHh
Q 019128            7 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE   82 (346)
Q Consensus         7 ~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGivt~~dll~~~~~~~~~~~~   82 (346)
                      .++.+..++.+.+|+|+|++  ++++++.++++.++++.|.+++++++||+++  ++++|+++.+|++....        
T Consensus       180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--------  251 (408)
T TIGR03520       180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--------  251 (408)
T ss_pred             HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--------
Confidence            45566669999999999996  7899999999999999999999999999983  68999999999975310        


Q ss_pred             hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 019128           83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  161 (346)
Q Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~  161 (346)
                                                     +  ...++.++|.   ++.++++++++.++++.|.+++.+..+|+| .|
T Consensus       252 -------------------------------~--~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G  295 (408)
T TIGR03520       252 -------------------------------K--KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG  295 (408)
T ss_pred             -------------------------------c--CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence                                           0  0112445554   478999999999999999999999999999 69


Q ss_pred             EEEEEeeHHHHHHHHHhcCCCccccccccccc---cCCeeecCCCCHHHHHHHhH
Q 019128          162 KPRGILTSKDILMRVISQNLPADSTLVEKVMT---PNPECATIDTPIVDALHIMH  213 (346)
Q Consensus       162 ~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~~~~~m~  213 (346)
                      .+.|+||..|+++.+..+-.+..+ .-.+.+.   .....++...++.++.+.|.
T Consensus       296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhC
Confidence            999999999999666554322211 1122221   33466677777777777763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.65  E-value=5.9e-15  Score=131.52  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=121.0

Q ss_pred             HHHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHH
Q 019128            6 TRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAA   81 (346)
Q Consensus         6 ~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~   81 (346)
                      +.++.+...+.+.+|+++|++  +++++++++|+.++++.+.+++++++||++ + ++++|+|+.+|++.....      
T Consensus        55 ~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~------  128 (292)
T PRK15094         55 RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS------  128 (292)
T ss_pred             HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc------
Confidence            345666669999999999997  689999999999999999999999999998 4 789999999999753100      


Q ss_pred             hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128           82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E  160 (346)
Q Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~  160 (346)
                                                       .....++.++|.+   ++++++++++.++++.|.+++.+.+||+| .
T Consensus       129 ---------------------------------~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~  172 (292)
T PRK15094        129 ---------------------------------DAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF  172 (292)
T ss_pred             ---------------------------------cCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC
Confidence                                             0001124556653   66899999999999999999999999999 7


Q ss_pred             CEEEEEeeHHHHHHHHHhcCCCccccccc-ccc--ccCCeeecCCCCHHHHHHHh
Q 019128          161 NKPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIM  212 (346)
Q Consensus       161 ~~~~Giit~~dll~~~~~~~~~~~~~~v~-~~m--~~~~~~v~~~~~l~~~~~~m  212 (346)
                      |.++|+||..|++..+...-.+.....-. .+-  ...-+.++..+++.++.+.+
T Consensus       173 G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        173 GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             CCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHh
Confidence            88999999999996555432221111100 011  12335555666666655554

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.64  E-value=8.6e-15  Score=134.94  Aligned_cols=118  Identities=27%  Similarity=0.368  Sum_probs=108.2

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      .+.++++  .++++|++.+++.+|.+.|.+.|++.+.+++ ++...||||.+|+..+.++++.+. ..+|+++|+.|+++
T Consensus       150 rv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~s  226 (610)
T COG2905         150 RVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVIS  226 (610)
T ss_pred             HHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCcee
Confidence            3555665  3789999999999999999999999888888 899999999999998888877765 78999999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      +..++.+.+|+-.|..++++++||++ +|+++|+||.+||++.
T Consensus       227 vd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l  268 (610)
T COG2905         227 VDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL  268 (610)
T ss_pred             ecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence            99999999999999999999999997 7999999999999986

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.64  E-value=2e-15  Score=137.87  Aligned_cols=123  Identities=22%  Similarity=0.279  Sum_probs=106.9

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  195 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  195 (346)
                      ...+++++|.+.++++++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+. +....+......++.++|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence            3456889998434789999999999999999999988888888 89999999999996 555544333346899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      +.++.+++++.++++.|.+++++++||+| +|+++|+||..|++++
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            99999999999999999999999999998 6899999999999986

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.64  E-value=9.6e-16  Score=145.10  Aligned_cols=177  Identities=18%  Similarity=0.183  Sum_probs=142.2

Q ss_pred             HHhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHh-----CCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHH
Q 019128            8 VIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAA   81 (346)
Q Consensus         8 ~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~-----~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~   81 (346)
                      .+.....+.+.+++++|+++++++++++|+.+|++.|.+     ++...+||+| +++++|+++.+|++..         
T Consensus       121 ~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---------  191 (449)
T TIGR00400       121 AINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---------  191 (449)
T ss_pred             HHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---------
Confidence            344555888999999999999999999999999999975     4567889998 7899999999998642         


Q ss_pred             hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128           82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E  160 (346)
Q Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~  160 (346)
                                                        ....+++++|.+  +++++++++++.++++.|.+++...+||+| +
T Consensus       192 ----------------------------------~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~  235 (449)
T TIGR00400       192 ----------------------------------KPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE  235 (449)
T ss_pred             ----------------------------------CCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC
Confidence                                              012346777764  688899999999999999999999999999 7


Q ss_pred             CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          161 NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       161 ~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      |+++|+||.+|++ ..+.+.      ..+++|....++..+++.+..++..|.+++..+++|.    .+.|++| ..++.
T Consensus       236 g~lvGiIt~~Dil-~~l~~~------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~  303 (449)
T TIGR00400       236 GRLVGIVTVDDII-DVIQSE------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIIS  303 (449)
T ss_pred             CeEEEEEEHHHHH-HHHHhh------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHH
Confidence            9999999999998 444332      2367776666655567888999999999999999986    4666666 44444


Q ss_pred             H
Q 019128          241 A  241 (346)
Q Consensus       241 ~  241 (346)
                      .
T Consensus       304 ~  304 (449)
T TIGR00400       304 N  304 (449)
T ss_pred             H
Confidence            3

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=3.9e-15  Score=115.19  Aligned_cols=110  Identities=21%  Similarity=0.259  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCeeecCCCCHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV  206 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  206 (346)
                      ++.++++++++.++++.|.+++.+++||++ +++++|++|..|+.+... ........++.++|.+  ++.++++++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            467899999999999999999999999998 689999999999974433 2222224567889974  688999999999


Q ss_pred             HHHHHhHhCCCceeEEEcCC---CcEEEEEehHHHHH
Q 019128          207 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH  240 (346)
Q Consensus       207 ~~~~~m~~~~~~~~~Vvd~~---g~~~Giit~~Di~~  240 (346)
                      ++++.|.+++.+++||+|++   |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999987   69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.64  E-value=4.4e-15  Score=114.25  Aligned_cols=110  Identities=27%  Similarity=0.397  Sum_probs=96.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++.+|++ ............++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence            466789999999999999999999999999 79999999999997 5444333222445888998999999999999999


Q ss_pred             HHHhHhCCCceeEEEcCC--CcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~--g~~~Giit~~Di~~  240 (346)
                      ++.|.+++...+||+|++  |+++|+||..|+++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            999999999999999987  89999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.64  E-value=1.6e-15  Score=118.51  Aligned_cols=111  Identities=17%  Similarity=0.129  Sum_probs=95.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+++.+.+||++ +++++|+++.+|++..+..... ....++.++|.+++.++.+++++.++
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im~~~~~~v~~~~~~~~v   81 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV-QPSDPVSKALYKQFKRVNKNDTLGKL   81 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc-CCCCcHHHHhhccceecCCCCCHHHH
Confidence            578899999999999999999999999998 6899999999999844443332 23679999999999999999999999


Q ss_pred             HHHhH---------hCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          209 LHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       209 ~~~m~---------~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .+.|.         ..+.+++||+|++|+++|+||..|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            99653         3367889999988999999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.63  E-value=7.1e-15  Score=112.59  Aligned_cols=111  Identities=58%  Similarity=0.840  Sum_probs=97.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++.+++++.++++.|.+.+.+.+||+++++++|+++.+|++..+...+......++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~   81 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL   81 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence            46789999999999999999999999999889999999999997455444333222578899988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|..++..++||+|++|+++|+||..|++.
T Consensus        82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=7.8e-15  Score=112.24  Aligned_cols=110  Identities=33%  Similarity=0.479  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+.+++++||++ +++++|+++.+|++..+..........++.++|.+++.++++++++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            467889999999999999999999999998 6899999999999843333222222457889998899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            99999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.62  E-value=6.9e-15  Score=114.66  Aligned_cols=111  Identities=27%  Similarity=0.417  Sum_probs=97.1

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCCe
Q 019128          129 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE  197 (346)
Q Consensus       129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~  197 (346)
                      +++.+++++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ ........          ....++.++|.+++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            3678899999999999999999999999998 69999999999997 44332211          124478899999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999999999999999985

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.62  E-value=1e-14  Score=111.87  Aligned_cols=109  Identities=27%  Similarity=0.412  Sum_probs=96.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      .+.++++++++.++++.|.+.+...+||++ +++++|+++.+|++ +....+... ..++.++|..++.++++++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence            367799999999999999999999999998 78999999999997 544433332 457889998889999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++.+++||+|++|+++|+||..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.62  E-value=1.9e-14  Score=132.17  Aligned_cols=189  Identities=19%  Similarity=0.223  Sum_probs=144.7

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      +++.+.+..++.++...+.+++++++||.|  .++++.++|.+.+++++........                       
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----------------------  219 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----------------------  219 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----------------------
Confidence            338999999999999999999999999998  5899999999999887543211100                       


Q ss_pred             hhhHHHHHHHHhCCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-C
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-L  181 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-~  181 (346)
                              ...+...++.++-... ..+..+..++++.+|++.|...+++.+||++ .|+.+|+++..|+. .+..++ .
T Consensus       220 --------~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~-~l~~~~~~  290 (381)
T KOG1764|consen  220 --------LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI-HLAREGTY  290 (381)
T ss_pred             --------cHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh-hhhhcCcc
Confidence                    0001112222222111 2488899999999999999999999999999 77789999999997 444432 2


Q ss_pred             Cccccc-ccccc------ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128          182 PADSTL-VEKVM------TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       182 ~~~~~~-v~~~m------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~  247 (346)
                      ...... +....      ..+++++.++.++.+++.+|..++.|+++|||++|.++|+||..|++.+++..-.
T Consensus       291 ~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~  363 (381)
T KOG1764|consen  291 NNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS  363 (381)
T ss_pred             CccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence            222222 22222      2457999999999999999999999999999999999999999999998766543

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.1e-14  Score=112.08  Aligned_cols=110  Identities=25%  Similarity=0.345  Sum_probs=94.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCC--CCHH
Q 019128          130 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV  206 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~-~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~--~~l~  206 (346)
                      ++.+++++.++.++++.|.+.+ ...+||+++|+++|+++..|++ +....+......++.++|.+++.+++++  +++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            3667899999999999998888 6778888888999999999997 5554433222457889998888999887  7899


Q ss_pred             HHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          207 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       207 ~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++.|.+++...+||+|++|+++|+||..|+++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.62  E-value=5.8e-15  Score=134.57  Aligned_cols=122  Identities=19%  Similarity=0.275  Sum_probs=106.5

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      ..+++++|.+..+++++++++++.++++.|.+.+...+||+| +|+++|+++..|+. +.+..+... ..++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence            356888887522389999999999999999999999999999 88999999999996 554433222 457899999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .++.+++++.++++.|.+++...+||+|++|+++|+||..|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999999999999999999999999999998999999999999976

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.5e-14  Score=110.72  Aligned_cols=111  Identities=32%  Similarity=0.478  Sum_probs=97.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++.+++++.++.+.|.+.+.+++||+++|+++|+++..|++.+....+......++.++|...+.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence            46789999999999999999999999999999999999999986444444433323358899988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|...+.+++||+|++|+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.61  E-value=2.1e-14  Score=109.49  Aligned_cols=109  Identities=31%  Similarity=0.481  Sum_probs=96.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.+++++.++.++++.|.+.+.+.+||+++++++|+++.+|++ ++...... ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l   79 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR   79 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence            46789999999999999999999999999989999999999997 55443332 35678999988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+.+.+.+||+|++|++.|+||.+|+++
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.3e-14  Score=113.55  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=92.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccc-------------cccccccccC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN  195 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~-------------~~v~~~m~~~  195 (346)
                      ++.++++++++.++++.|.+++++++||++ +|+++|+++..|++ +....+.....             ......|..+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            477899999999999999999999999998 78999999999997 44432221111             1123467788


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            999999999999999999999999999999899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.60  E-value=1.2e-14  Score=111.28  Aligned_cols=110  Identities=21%  Similarity=0.286  Sum_probs=97.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++++++++.++++.|.+.+++++||++ +++++|+++..|+. ++..........++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            467899999999999999999999999999 68999999999997 5554433222367889999999999999999999


Q ss_pred             HHHhHhCCCceeEEEcC-CCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~-~g~~~Giit~~Di~~  240 (346)
                      ++.|...+.+++||+|+ +|+++|++|..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999997 899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.60  E-value=1.2e-14  Score=126.32  Aligned_cols=117  Identities=24%  Similarity=0.258  Sum_probs=108.8

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      ..+.++|+|-.+..++.+++++.+-.++..+.+++++||+| ..+++|++|.+|+.      +.. .+.++..+|+++|+
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~-~~t~ieKVMtknp~  260 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKK-PSTTIEKVMTKNPI  260 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCC-CCccHHHHhccCCe
Confidence            35799999888899999999999999999999999999999 88999999999997      222 27899999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      ++.+.+++..+.+.|.-.++..+||+|++.+++|+||+.|+++..
T Consensus       261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~l  305 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999999999999999874

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.4e-14  Score=113.07  Aligned_cols=110  Identities=32%  Similarity=0.388  Sum_probs=95.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCc-----------cccccccccccCC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP  196 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~-----------~~~~v~~~m~~~~  196 (346)
                      ++.++.++.++.+++++|.+.+.+.+||++ + |+++|+++..|++ .++......           ...++.++|.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            467889999999999999999999999998 5 8999999999997 554432211           1347888898899


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.60  E-value=3e-14  Score=108.56  Aligned_cols=108  Identities=26%  Similarity=0.341  Sum_probs=96.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++++++++.++++.|.+.+++++||++++++.|+++.+|++ +....+..  ..++.++|..++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence            46789999999999999999999999999889999999999997 55444322  2578889988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999998899999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.7e-14  Score=110.51  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          131 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      +..+.+++++.++++.|.+.+.+++||++ +++++|+++.+|+++.... .......++.++|..++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            67789999999999999999999999998 7899999999999733333 222224578899988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++...+||+|++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.60  E-value=2.8e-14  Score=108.76  Aligned_cols=106  Identities=33%  Similarity=0.407  Sum_probs=95.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++.++.++.++++.|.+++.+++||++ +|+++|+++.+|++ +....+    ..++.++|.+++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~----~~~~~~~~~~~~~~v~~~~~l~~~   77 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARD----KKSVEDIMTRNVITATPDEPIDVA   77 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhC----ccCHHHhcCCCCeEECCCCcHHHH
Confidence            577899999999999999999999999998 78999999999997 544332    235888898899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+.+.+.+||++++|++.|+||..|+.+
T Consensus        78 ~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          78 ARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.6e-14  Score=110.32  Aligned_cols=108  Identities=25%  Similarity=0.368  Sum_probs=95.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+. +.......  ..++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence            467789999999999999988899999999 68999999999997 54443322  357889998999999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++..++||+|++|+++|++|..|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.4e-14  Score=109.50  Aligned_cols=109  Identities=30%  Similarity=0.511  Sum_probs=96.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+.+++++||++ +++++|+++..|++ +.+..+... ..++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDL-DTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence            467889999999999999999999999999 68999999999997 554443322 457889998999999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++...+||+|++|++.|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.7e-14  Score=107.76  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=82.7

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      +++++++++++.+|.+.|.+++++++||+| + |+++|++|..|+.+..                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            468899999999999999999999999998 4 7999999999986530                               


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll  173 (346)
                                               .+.++.+++++.+|++.|.+++++++||++ + |+++|++|.+|++
T Consensus        51 -------------------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          51 -------------------------RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             -------------------------eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence                                     167899999999999999999999999999 5 8999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.8e-14  Score=111.16  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=90.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCc---------cccccccccccCCee
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPEC  198 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~---------~~~~v~~~m~~~~~~  198 (346)
                      ++.++++++++.++++.|.+++++++||++ + ++++|+++..|++ ++...+...         ....+..+|..++.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLV-EFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHH-HHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467889999999999999999999999999 5 8999999999997 433221100         001223467788999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  239 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~  239 (346)
                      +++++++.++++.|.+++.+++||+|++|+++|+||..|+-
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            99999999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=1.9e-14  Score=110.69  Aligned_cols=108  Identities=26%  Similarity=0.258  Sum_probs=92.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCc-c----ccccccccccCCeeecCCC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-D----STLVEKVMTPNPECATIDT  203 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~-~----~~~v~~~m~~~~~~v~~~~  203 (346)
                      +++++++++++.++++.|.+.+++.+||++ +++++|+++.+|++ ++....... .    ..++.++|.+++.++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   80 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence            477899999999999999999999999999 78999999999997 544332211 1    3578899988999999999


Q ss_pred             CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.++++.|.+.+  .+||+|++|+++|+||..|+++
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            9999999998865  5999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.59  E-value=3.2e-14  Score=108.63  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=93.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  207 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  207 (346)
                      ++.+++++.++.++++.|.+.+.+.+||++ + ++++|+++..|++ +....+..  ..++..+| +++.++++++++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~   77 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD   77 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence            478899999999999999999999999998 6 8999999999997 55544322  14566666 67899999999999


Q ss_pred             HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999999999999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.59  E-value=4.3e-14  Score=107.88  Aligned_cols=109  Identities=35%  Similarity=0.490  Sum_probs=95.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|++..+...+.. ...++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            46789999999999999999999999999989999999999997444433322 24578899989999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+.+..++||+++ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            9999999999999997 99999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=2.8e-14  Score=110.91  Aligned_cols=110  Identities=33%  Similarity=0.428  Sum_probs=96.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC---------ccccccccccccCCeee
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA  199 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~---------~~~~~v~~~m~~~~~~v  199 (346)
                      ++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..|++ +.......         ....++.++|..++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v   80 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence            467899999999999999999999999999 68999999999997 44432221         12457888998899999


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=2.6e-14  Score=113.39  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCc-----------------------cc
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS  185 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~-----------------------~~  185 (346)
                      ++.++.+++++.++++.|.+.+.+.+||+| +++++|+++..|++ +........                       ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence            467789999999999999999999999999 69999999999998 444321111                       13


Q ss_pred             cccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       186 ~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++.++|.+++.++++++++.++++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4788999888999999999999999999999999999996 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.58  E-value=5e-14  Score=107.58  Aligned_cols=109  Identities=20%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++++++++.++.++++.|.+.+...++|++++++.|+++..|++ +....+......++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            36678999999999999999999999999878999999999997 44433322235678899988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++...+||+|+ |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            9999999999999985 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.58  E-value=5.7e-14  Score=107.06  Aligned_cols=107  Identities=22%  Similarity=0.377  Sum_probs=96.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.+++++.++.++.+.|.+.+++++||+++++++|+++..|+. +......  ...++.++|.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            57789999999999999999899999999989999999999997 5544332  25688999999999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++.+.+||+| +|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            999999999999999 899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.58  E-value=2.3e-14  Score=110.06  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=91.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCeeecCCCCH
Q 019128          130 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI  205 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~-~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l  205 (346)
                      ++.++++++++.++++.|.+++ .+.+||++ +++++|+++.+|++ .......  ...++.++|..  ++.++.+++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLR-AIPTSQW--AQTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHH-HHHHhhc--cccchhhhhcccccceEECCCCcH
Confidence            4678999999999999997765 88999998 68999999999997 4433221  14578888864  36789999999


Q ss_pred             HHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          206 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       206 ~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++++.|.+++.+++||+|++|+++|++|..|+++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=5.5e-14  Score=107.48  Aligned_cols=110  Identities=25%  Similarity=0.391  Sum_probs=93.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      .+.++.+++++.++++.|.+.+...++|.++|+++|+++.+|+++.....+......++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   81 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR   81 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence            46789999999999999988888888887789999999999997333322122224578999988889999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++...+||+| +|+++|+||..|+++
T Consensus        82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            999999999999998 599999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.58  E-value=4.3e-14  Score=108.33  Aligned_cols=110  Identities=28%  Similarity=0.392  Sum_probs=96.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++.++.++.++++.|.+.+.+.+||++ +++++|+++..++. +++.........++.++|.+++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   81 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAEA   81 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence            466789999999999999888889999998 78999999999997 5555443333457999998899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|..++...+||+|++|+++|+||..||++
T Consensus        82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=7.2e-14  Score=106.80  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++++++++.++++.|.+.+.+.+||+++++++|+++..|++..+..........++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   81 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA   81 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence            46778999999999999999999999999977999999999998434333222224578899988899999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+.+...+||+|++ +++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999999965 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.8e-14  Score=108.21  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+.+++++||++ +|+++|+++.+|++ .+...... ...++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            467899999999999999999999999998 68999999999997 54432211 1357888998999999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++...+||+|+ |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.8e-14  Score=106.20  Aligned_cols=93  Identities=16%  Similarity=0.262  Sum_probs=84.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      +++++.+++++.++++.|.+.+++.+||++ +|+++|+++.+|+. +..                 .+.++++++++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence            477899999999999999999999999998 78999999999997 210                 17899999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.57  E-value=6.3e-14  Score=106.49  Aligned_cols=105  Identities=25%  Similarity=0.342  Sum_probs=94.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+.++.++||++ +++++|+++..|++ .....     ..++.++|.+.+.++++++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~~   76 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRDV   76 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHHH
Confidence            577899999999999999999999999999 68999999999997 43322     246888998899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+.+..++||+|++|+++|++|.+|+++
T Consensus        77 ~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          77 LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            99999999999999999999999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.57  E-value=5e-14  Score=106.57  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=92.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ +..       ..++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence            467899999999999999999999999998 79999999999997 431       124778888888899999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++...+||+|++|+++|+||..|+++
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.57  E-value=4.4e-14  Score=107.40  Aligned_cols=104  Identities=30%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++.+++++.++.+.|.+.+.+++||++ +|+++|+++..|++ ...      ...++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~------~~~~v~~~~~~~~~~v~~~~~l~~~   75 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GKD------PDTTIEKVMTKNPITVNPKTSVASV   75 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-ccc------ccccHHHHhcCCCeEECCCCCHHHH
Confidence            578899999999999999999999999999 79999999999996 321      1457889998899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|.+++...+||+|++|+++|++|..|+++
T Consensus        76 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          76 AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.4e-14  Score=112.16  Aligned_cols=109  Identities=28%  Similarity=0.356  Sum_probs=94.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccc--------------------ccc
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV  188 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~--------------------~~v  188 (346)
                      ++.++.+++++.++++.|.+.+++++||++ +++++|+++..|++ ++.........                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            467899999999999999999999999999 78999999999997 44433221111                    278


Q ss_pred             ccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       189 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            8889888999999999999999999999999999998 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.56  E-value=3.6e-14  Score=134.93  Aligned_cols=135  Identities=25%  Similarity=0.304  Sum_probs=109.8

Q ss_pred             CCCCCChh-hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHH
Q 019128           99 GTSISGPN-TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDIL  173 (346)
Q Consensus        99 g~~~~~~~-~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll  173 (346)
                      |.++++.+ +..++..+.-.-....+.|..  +++++++++++.+++++|.+++++.+||+++    ++++|++|.+|+.
T Consensus        75 glGvi~~~~~~e~~~~~v~kvk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~  152 (495)
T PTZ00314         75 GIGVIHNNCSIEEQVEEVRKVKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID  152 (495)
T ss_pred             CeEEecCCCCHHHHHHHHhhcccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence            55555544 233333333333446667764  7889999999999999999999999999984    7999999999995


Q ss_pred             HHHHhcCCCcccccccccccc--CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          174 MRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                       .. .    ....++.++|++  ++.++++++++.+++++|.+++.+.+||+|++|+++|+||++||++.
T Consensus       153 -~~-~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        153 -FV-K----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN  216 (495)
T ss_pred             -hc-c----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence             21 1    125689999987  88999999999999999999999999999999999999999999986

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.56  E-value=2.9e-14  Score=130.15  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=101.6

Q ss_pred             CcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           16 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        16 ~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      ..++|+|+|++  +++++++++|+.+|++.|.+++.+.+||+| +|+++|+||..|+.+....                 
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~-----------------  262 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-----------------  262 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence            67799999997  899999999999999999999888888888 7999999999998653100                 


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI  172 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dl  172 (346)
                            +              ......++.++|.+  ++.++.+++++.++++.|.+++++.+||+++++++|++|.+|+
T Consensus       263 ------~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di  320 (326)
T PRK10892        263 ------G--------------IDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL  320 (326)
T ss_pred             ------C--------------CCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence                  0              00112457788874  7889999999999999999999999999998999999999999


Q ss_pred             H
Q 019128          173 L  173 (346)
Q Consensus       173 l  173 (346)
                      +
T Consensus       321 l  321 (326)
T PRK10892        321 L  321 (326)
T ss_pred             H
Confidence            7

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.56  E-value=1.8e-13  Score=125.75  Aligned_cols=263  Identities=19%  Similarity=0.221  Sum_probs=172.0

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  103 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  103 (346)
                      ...+.++...++.+|+..+..++.+..|++|  ..++.|+++..|++..+........                      
T Consensus        76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~----------------------  133 (381)
T KOG1764|consen   76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS----------------------  133 (381)
T ss_pred             ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC----------------------
Confidence            4578899999999999999999999999998  5789999999999887654332100                      


Q ss_pred             ChhhHHHHHH--HHhCCCCcccc--ccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHH
Q 019128          104 GPNTFIETLR--ERMFRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVI  177 (346)
Q Consensus       104 ~~~~~~~~~~--~~~~~~~v~~i--m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~  177 (346)
                       .......+.  .......+..+  ....+.++.+.+..++.++...+.+.+++++||.|  .+++..++|.+-++..+.
T Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~  212 (381)
T KOG1764|consen  134 -SLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLW  212 (381)
T ss_pred             -cHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHH
Confidence             000000000  00111111111  01112348999999999999999999999999998  689999999999984333


Q ss_pred             hcCCCccccccccccc-----------cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          178 SQNLPADSTLVEKVMT-----------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       178 ~~~~~~~~~~v~~~m~-----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ......   +...+|.           .++..+.+++++.+|+++|...++..+||||+.|+.+|+++..|+...+...-
T Consensus       213 ~~~~~~---~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~  289 (381)
T KOG1764|consen  213 LNGRLL---PLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGT  289 (381)
T ss_pred             Hhhccc---ccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCc
Confidence            322211   1222222           35889999999999999999999999999999999999999999998633211


Q ss_pred             cCCCCCchHHHHHHHHHHHHHhhcCCCCC----CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC
Q 019128          247 GNTAGSNNEAASTMMQKFWDSAMALSPND----DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL  322 (346)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~  322 (346)
                        +.......     -..+........++    ...+|++..+..+..                  .+.+.+=|+|.+|.
T Consensus       290 --~~~~~~~~-----l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~------------------~~vHRl~VVd~~~~  344 (381)
T KOG1764|consen  290 --YNNLDLSC-----LSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVA------------------HRVHRLWVVDEDGV  344 (381)
T ss_pred             --cCccchhH-----HHHHhhhcccccCccEEEeecchHHHHHHHHHh------------------cCceEEEEEcCCCc
Confidence              11000000     00111111111000    011333333332211                  12233559999999


Q ss_pred             eEEEecCCCChHHHHHhhccc
Q 019128          323 MHRFTCGMLPFPNFIEVTNYE  343 (346)
Q Consensus       323 ~~~~~~g~~s~~~~~~~~~~~  343 (346)
                      +    +|++|++||++.+-+.
T Consensus       345 l----~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  345 L----VGVISLSDILSYLVLT  361 (381)
T ss_pred             E----EEEeeHHHHHHHHHhC
Confidence            9    9999999999987653

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.56  E-value=8.4e-14  Score=106.15  Aligned_cols=109  Identities=32%  Similarity=0.359  Sum_probs=95.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++.+++++.++++.|.+.+.+.+||+++++++|+++.+|++ +....+.. ...++.++|.+++.++.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence            47789999999999999999999999999889999999999997 54433221 12367788989999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++.+++||+|++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.9e-14  Score=110.35  Aligned_cols=111  Identities=20%  Similarity=0.301  Sum_probs=91.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH----HHhcC-CCccccccccccccCCeee----
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR----VISQN-LPADSTLVEKVMTPNPECA----  199 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~----~~~~~-~~~~~~~v~~~m~~~~~~v----  199 (346)
                      ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+...    ....+ ......+++++|.+++..+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            367899999999999999999999999998 7899999999999731    12221 1222457889997655433    


Q ss_pred             --cCCCCHHHHHHHhHhCCCceeEEEcCC-CcEEEEEehHHHHH
Q 019128          200 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  240 (346)
Q Consensus       200 --~~~~~l~~~~~~m~~~~~~~~~Vvd~~-g~~~Giit~~Di~~  240 (346)
                        .+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368999999999999999999999986 89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.56  E-value=4.5e-14  Score=133.48  Aligned_cols=115  Identities=29%  Similarity=0.358  Sum_probs=102.5

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeeHHHHHHHHHhcCCCccccccccccc-c
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P  194 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~---~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~  194 (346)
                      ...+.|.+  ++++++++.++.++++.|.+++++++||++ +   ++++|++|.+|++ ...  .   ...++.++|. .
T Consensus        81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~--~---~~~~V~dvm~~~  152 (450)
T TIGR01302        81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK--D---KGKPVSEVMTRE  152 (450)
T ss_pred             cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh--c---CCCCHHHhhCCC
Confidence            46677764  789999999999999999999999999999 4   6999999999996 322  1   2468999998 4


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            999999999999999999999999999999999999999999999874

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=3.5e-14  Score=108.88  Aligned_cols=110  Identities=25%  Similarity=0.346  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCccccccccccccCCeeecCCCCHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD  207 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~  207 (346)
                      ++.+++++.++.++++.|.+.+.+.+||++ +++++|+++..|+++.+.... ......++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            467899999999999999998999999998 789999999999973333221 111245788999889999999999999


Q ss_pred             HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +++.|.+++...+||+|+ |+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.56  E-value=8.1e-14  Score=131.53  Aligned_cols=160  Identities=15%  Similarity=0.147  Sum_probs=121.2

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      ++..+++++|.++++++++++++.+|++.|.+++++.+||+| +++++|+||.+|+...                     
T Consensus        86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---------------------  144 (479)
T PRK07807         86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---------------------  144 (479)
T ss_pred             HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence            456788999999999999999999999999999999999998 7899999999997321                     


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                                            -...++.++|++  +++++++++++.++++.|.+++...+||+| +++++|+||.+|+
T Consensus       145 ----------------------~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI  200 (479)
T PRK07807        145 ----------------------DRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA  200 (479)
T ss_pred             ----------------------ccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                  001347777864  799999999999999999999999999999 7999999999999


Q ss_pred             HHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcC
Q 019128          173 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR  225 (346)
Q Consensus       173 l~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  225 (346)
                      + +.......  ...-...+......  ......+....|.+.+... +++|-
T Consensus       201 l-~~~~~~~~--~~~~g~l~V~aav~--~~~~~~~~a~~Lv~aGvd~-i~~D~  247 (479)
T PRK07807        201 L-RATIYTPA--VDAAGRLRVAAAVG--INGDVAAKARALLEAGVDV-LVVDT  247 (479)
T ss_pred             H-HHhhCCch--hhhhhccchHhhhc--cChhHHHHHHHHHHhCCCE-EEEec
Confidence            8 44332210  00000111111111  2234667888888888876 55663

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.56  E-value=7.3e-14  Score=106.25  Aligned_cols=108  Identities=24%  Similarity=0.313  Sum_probs=92.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++.+++++.++.+.|.+.+++++||+++++++|+++..|+. +...........++.++|.+++.++++++++.++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            46789999999999999999999999999989999999999997 55433322223578889988899999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+ . ..+||+|++|+++|+||.+|+++
T Consensus        81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            99988 3 34789998999999999999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.55  E-value=9.7e-14  Score=132.57  Aligned_cols=172  Identities=21%  Similarity=0.261  Sum_probs=131.0

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      .++++|.++++++++++++.+++++|.+++++.+||+| +++++|+|+.+|+....                        
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------  143 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------  143 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence            56789999999999999999999999999999999999 79999999999985310                        


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                                        ....++.++|.+ .+++++++++++.++++.|.+++++.+||++ +++++|++|.+|+++..
T Consensus       144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence                              012346667752 4688999999999999999999999999999 89999999999998443


Q ss_pred             HhcCC--C-ccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcC-CCcEEEEEehHHHHHH
Q 019128          177 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHA  241 (346)
Q Consensus       177 ~~~~~--~-~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~~Giit~~Di~~~  241 (346)
                      .....  + .....+...|..+     +  .-.+..+.|.+.++..+ |+|. +|+..|+++..+.++.
T Consensus       205 ~~p~a~~d~~g~l~V~aai~~~-----~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        205 EFPNACKDEQGRLRVGAAVGVG-----A--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             hCCCcccccCCCEEEEeecccC-----c--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence            22111  0 0122344444332     2  12788888889999855 5654 6888887776666654

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.55  E-value=6.5e-14  Score=107.10  Aligned_cols=106  Identities=15%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..|+.+...                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-------------------------------   50 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-------------------------------   50 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence            467899999999999999999999999998 789999999999865200                               


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                              +.....++.++|..  ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        51 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          51 --------NDYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             --------ccccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence                    00112346677753  678899999999999999999999999999 69999999999996

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.55  E-value=1.1e-13  Score=107.17  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=95.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCCeee
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA  199 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~~v  199 (346)
                      ++.+++++.++.++++.|.+.++..+||+++|+++|+++..|++ ........          ....++.++|.+++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            46789999999999999999999999999989999999999997 44332110          01356788998899999


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++++.+++..|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=4.9e-14  Score=109.47  Aligned_cols=111  Identities=28%  Similarity=0.334  Sum_probs=94.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC---CC-----ccccccccccccCCeeec
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT  200 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~---~~-----~~~~~v~~~m~~~~~~v~  200 (346)
                      ++.++.+++++.++++.|.+.+++++||++ +|+++|+++..|+++......   ..     ....++.++|.+++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            477899999999999999999999999999 799999999999973221110   00     124567888988999999


Q ss_pred             CCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          201 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       201 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            9999999999999999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.55  E-value=4e-14  Score=112.24  Aligned_cols=109  Identities=28%  Similarity=0.408  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC----------------------Ccccc
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADST  186 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~----------------------~~~~~  186 (346)
                      ++.++.+++++.++++.|.+.++.++||++ +++++|+++..|++ +......                      .....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            578899999999999999999999999999 78999999999997 3322110                      01235


Q ss_pred             ccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       187 ~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.++|.+++.++++++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus        82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            68889988999999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=7.9e-14  Score=109.39  Aligned_cols=110  Identities=23%  Similarity=0.233  Sum_probs=93.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-------------CCccccccccccccC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPADSTLVEKVMTPN  195 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-------------~~~~~~~v~~~m~~~  195 (346)
                      ++.++.++.++.++++.|.+.+.+.+||++ +++++|++|..|++ .++...             ......++.++|.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIV-DFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP   80 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHH-HHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence            467789999999999999999999999999 78999999999997 433211             001134688999899


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEc--CCCcEEEEEehHHHHH
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH  240 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd--~~g~~~Giit~~Di~~  240 (346)
                      ++++++++++.+++..|.+.+.+.+||++  ++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            99999999999999999999999999984  4699999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=9.6e-14  Score=107.67  Aligned_cols=109  Identities=31%  Similarity=0.371  Sum_probs=94.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCC----------CccccccccccccCCeee
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA  199 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~----------~~~~~~v~~~m~~~~~~v  199 (346)
                      ++.++.+++++.++++.|.+.+.+++||+++|+++|+++..|+. +......          .....++.++|..++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIA-DALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHH-HhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            46789999999999999999999999999999999999999997 4332111          112357888898899999


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++++.++++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1e-13  Score=107.76  Aligned_cols=110  Identities=23%  Similarity=0.400  Sum_probs=95.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCC---C-------ccccccccccccCCeee
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---P-------ADSTLVEKVMTPNPECA  199 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~---~-------~~~~~v~~~m~~~~~~v  199 (346)
                      ++.+++++.++.++++.|.+.+++++||+++|+++|+++..|++ +......   .       ....++.++|.+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHH-HHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            47789999999999999999999999999989999999999997 4332210   0       01246888898999999


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.53  E-value=2.3e-13  Score=103.05  Aligned_cols=104  Identities=27%  Similarity=0.388  Sum_probs=93.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++++++.+.++.++++.|.+.+.+.+||+++++++|+++..|++ ..     . ...++.++|..++.++++++++.+++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~~   75 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDAA   75 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHHH
Confidence            57889999999999999998888899999889999999999996 31     1 14578899988899999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++...+||+|++|+++|+|+..|+++
T Consensus        76 ~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          76 RVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999999999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.53  E-value=2.2e-13  Score=102.79  Aligned_cols=103  Identities=27%  Similarity=0.379  Sum_probs=92.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      ++.++++++++.++++.|.+++.+.+||+++++++|+++..|++ +..      ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK   74 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence            46778999999999999999999999999989999999999997 321      13468889988999999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +.|.+++..++||+|+ |+++|+||..|++.
T Consensus        75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            9999999999999997 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.53  E-value=1.4e-13  Score=130.68  Aligned_cols=107  Identities=27%  Similarity=0.287  Sum_probs=95.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCeeecCCC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDT  203 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~  203 (346)
                      .++++++++++.++++.|.+++++.+||+|+    ++++|+||..|+. .. .   .....+++++|++  +++++++++
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~  180 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGT  180 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCC
Confidence            3568999999999999999999999999984    7999999999994 32 1   1235789999986  778999999


Q ss_pred             CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      ++.+|++.|.++++..+||+|++|+++|+||..|+++.
T Consensus       181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            99999999999999999999999999999999999985

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.7e-13  Score=105.34  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      .+.++++++++.+|++.|.+++...+||+| +|+++|+++..|+.+.....                             
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~-----------------------------   52 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC-----------------------------   52 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc-----------------------------
Confidence            467889999999999999999999999998 78999999999987642100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                             .......++.++|.  .+++++.+++++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus        53 -------~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~  112 (114)
T cd04619          53 -------GGPGCTAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL  112 (114)
T ss_pred             -------CCCcccCCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence                   00011234556665  3688999999999999999999999999999 68999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.53  E-value=6.4e-14  Score=127.72  Aligned_cols=117  Identities=12%  Similarity=0.169  Sum_probs=100.7

Q ss_pred             cccccccccCC--CeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           17 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        17 ~~~v~dim~~~--~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      ..+|+++|.++  ++++++++|+.+|++.|.+++...+||+| +|+++|+|+..|+.+.+..                  
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------  257 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------  257 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence            57899999988  99999999999999999999999999999 7999999999998653210                  


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                                          ......++.++|.+  ++.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+
T Consensus       258 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di  315 (321)
T PRK11543        258 --------------------GGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF  315 (321)
T ss_pred             --------------------CCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                00112346777864  788899999999999999999999999999 7899999999999


Q ss_pred             H
Q 019128          173 L  173 (346)
Q Consensus       173 l  173 (346)
                      +
T Consensus       316 ~  316 (321)
T PRK11543        316 Y  316 (321)
T ss_pred             H
Confidence            7

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.52  E-value=2.5e-13  Score=104.30  Aligned_cols=105  Identities=28%  Similarity=0.340  Sum_probs=91.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecC--CC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--DT  203 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~--~~  203 (346)
                      ++.++.+++++.++++.|.+.+..++||+|+    |+++|+++.+|++ .... .    ..+++++|..++.++..  ++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~~-~----~~~v~~~~~~~~~~~~~~~~~   76 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLTD-S----ETPLSEVMTPREVLVVAPTGI   76 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhhc-c----CCCHHHhcCCCceEEECCCCC
Confidence            4678899999999999999889999999983    7999999999986 3221 1    34688999887888866  99


Q ss_pred             CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        77 ~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          77 TLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999999999999999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2e-13  Score=101.55  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=82.9

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+...                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            578899999999999999999999999998 7999999999998542                                 


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                             ..+.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus        49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~   94 (96)
T cd04614          49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL   94 (96)
T ss_pred             -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence                                   1267899999999999999999999999999 58999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.52  E-value=1.5e-13  Score=134.48  Aligned_cols=125  Identities=22%  Similarity=0.235  Sum_probs=107.1

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          115 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       115 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      .+...+++++|.+  ++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.+... ......++.++|.
T Consensus       443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-~~~~~~~v~dim~  519 (574)
T PRK01862        443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-RDTTDKTAADYAH  519 (574)
T ss_pred             HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-cccccchHHHhcc
Confidence            3455678999975  678899999999999999999999999999 78999999999997433332 2222457899999


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCC--CcEEEEEehHHHHHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAA  242 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--g~~~Giit~~Di~~~~  242 (346)
                      +++.++++++++.++++.|.+++.+.+||+|++  |+++|+||+.|++++.
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999976  4899999999999874

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.51  E-value=2.5e-13  Score=103.37  Aligned_cols=105  Identities=32%  Similarity=0.443  Sum_probs=91.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecC-CCCHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIVD  207 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~-~~~l~~  207 (346)
                      ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++.++++ ...     ....++.++|...+.++.+ ++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~~   76 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLEE   76 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHHH
Confidence            577899999999999999999999999999 68999999999985 321     1245788999777777677 999999


Q ss_pred             HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          77 ALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999999999999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.51  E-value=2.4e-13  Score=104.35  Aligned_cols=109  Identities=19%  Similarity=0.276  Sum_probs=88.9

Q ss_pred             CCCeeecCCccHHHHHHHHHhCC-cceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  103 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  103 (346)
                      +++.++++++++.+|++.|.+++ .+.+||+| +|+++|+++..|++.....                            
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~----------------------------   52 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS----------------------------   52 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh----------------------------
Confidence            35778999999999999997775 89999998 6999999999998764210                            


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                 .....++.++|.+...++++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus        53 -----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          53 -----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             -----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence                       001234566665433466899999999999999999999999999 58999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=1.3e-13  Score=106.85  Aligned_cols=116  Identities=23%  Similarity=0.287  Sum_probs=88.7

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++++++++++++.+|++.|.+++++.+||++ +|+++|+++.+|++.....+...                         
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~-------------------------   55 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN-------------------------   55 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc-------------------------
Confidence            4678999999999999999999999999998 79999999999998642111000                         


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                        .....+...+   ....+|.  .++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|++
T Consensus        56 --~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          56 --NLDLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             --cccCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence              0000011111   0122332  3578999999999999999999999999999 68999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.51  E-value=8.4e-13  Score=124.57  Aligned_cols=115  Identities=13%  Similarity=0.074  Sum_probs=101.4

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      ++..++.++|.++++++.+++++.+|+++|.+++++.+||+|+++++|+||.+|+...                      
T Consensus        85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~----------------------  142 (475)
T TIGR01303        85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV----------------------  142 (475)
T ss_pred             HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC----------------------
Confidence            4578889999999999999999999999999999999999998899999999997321                      


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                           ....++.++|++  +++++++++++.+++++|.+++++.+||++ +++++|+||.+|++
T Consensus       143 ---------------------~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl  199 (475)
T TIGR01303       143 ---------------------DRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGAL  199 (475)
T ss_pred             ---------------------CCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence                                 011347777874  789999999999999999999999999999 89999999999998


Q ss_pred             H
Q 019128          174 M  174 (346)
Q Consensus       174 ~  174 (346)
                      +
T Consensus       200 ~  200 (475)
T TIGR01303       200 R  200 (475)
T ss_pred             H
Confidence            3

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.51  E-value=5.3e-13  Score=102.70  Aligned_cols=109  Identities=34%  Similarity=0.444  Sum_probs=96.1

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      +.++++.++.++.++...|.++++..+||++.++++|++|.+|++ +....+... ..++.++|++++.++.++.++.++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~   84 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA   84 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence            478999999999999999999999999999977999999999998 444433221 126899998899999999999999


Q ss_pred             HHHhHh-CCCceeEEEcCCC-cEEEEEehHHHH
Q 019128          209 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT  239 (346)
Q Consensus       209 ~~~m~~-~~~~~~~Vvd~~g-~~~Giit~~Di~  239 (346)
                      .+.|.. ++++.+||+|+++ +++|++|..|++
T Consensus        85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999 7999999999886 999999999973

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.1e-13  Score=104.48  Aligned_cols=110  Identities=22%  Similarity=0.338  Sum_probs=89.8

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.++++..+||+| +|+++|+++..|+++.....                             
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-----------------------------   52 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-----------------------------   52 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence            578899999999999999999999999998 69999999999987753210                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~---~~~~Giit~~dll  173 (346)
                              ......++.++|.....+.++++++++.++++.|.+++++.+||++ +   ++++|++|..|++
T Consensus        53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence                    0011233556665213578999999999999999999999999998 4   6999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=6.6e-13  Score=100.86  Aligned_cols=110  Identities=34%  Similarity=0.440  Sum_probs=94.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.+++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++ .............+.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence            467789999999999999999999999999 68999999999998 4444332221223677888899999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++.|...+.+.+||+|++|+++|+++..|+++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.49  E-value=3.3e-13  Score=128.94  Aligned_cols=115  Identities=27%  Similarity=0.345  Sum_probs=103.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc-cCCe
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPE  197 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~  197 (346)
                      .+.++|.  .+++++++++++.++++.|.+++++++||++ +++++|++|.+|+. ...  .   ...++.++|. ++++
T Consensus        88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~--~---~~~~V~dim~~~~~v  159 (486)
T PRK05567         88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET--D---LSQPVSEVMTKERLV  159 (486)
T ss_pred             hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc--c---CCCcHHHHcCCCCCE
Confidence            4677787  4899999999999999999999999999999 89999999999995 321  1   2457899998 7899


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence            999999999999999999999999999999999999999999864

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.49  E-value=3.6e-13  Score=102.48  Aligned_cols=101  Identities=21%  Similarity=0.276  Sum_probs=88.8

Q ss_pred             eCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128          134 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  207 (346)
Q Consensus       134 v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  207 (346)
                      +.+++++.++++.|.+++     +..+||++ +++++|+++.+|++ +.     . ...++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-LA-----D-PDTPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-cC-----C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence            567899999999998877     46889998 78999999999997 31     1 145788999888999999999999


Q ss_pred             HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      +++.|...+...+||+|++|+++|+||..|++++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999999999999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.49  E-value=5.1e-13  Score=100.78  Aligned_cols=100  Identities=26%  Similarity=0.241  Sum_probs=89.5

Q ss_pred             eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHH
Q 019128          132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI  211 (346)
Q Consensus       132 ~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~  211 (346)
                      ++++++.++.++++.|.+.+.+++||+++++++|+++.+|++ ...       ..++.++|.+++.+++++.++.++++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            468999999999999999999999999889999999999997 321       235777888889999999999999999


Q ss_pred             hHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          212 MHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       212 m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      |.+++...+||+| +|+++|+||..|+++
T Consensus        76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.49  E-value=4.2e-13  Score=127.69  Aligned_cols=108  Identities=28%  Similarity=0.308  Sum_probs=97.5

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccC--CeeecCC
Q 019128          129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID  202 (346)
Q Consensus       129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~  202 (346)
                      ++++++++++++.++++.|.+++++.+||+++    ++++|+||.+|+. ...     ....++.++|+++  +.+++++
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~  181 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG  181 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence            37899999999999999999999999999984    7999999999995 322     1256899999876  7899999


Q ss_pred             CCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          203 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       203 ~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++.++++.|.+++...+||+|++|+++|+||++||++..
T Consensus       182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVK  221 (505)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            9999999999999999999999999999999999999874

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.49  E-value=1.3e-13  Score=127.31  Aligned_cols=126  Identities=26%  Similarity=0.303  Sum_probs=110.1

Q ss_pred             CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      ..+-.+++.++|+.+++++++.+|+.+|...|.+++.+++.+++ ++...||||.+|+....+...              
T Consensus       144 ~e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g--------------  209 (610)
T COG2905         144 SEFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG--------------  209 (610)
T ss_pred             chHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------------
Confidence            45667899999999999999999999999999999999888888 899999999999987654311              


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD  171 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~d  171 (346)
                                             .-...+++++|+.  ++++++.++-+.+|+-.|.+++++++||+++|+++|++|..|
T Consensus       210 -----------------------~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~d  264 (610)
T COG2905         210 -----------------------RSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTD  264 (610)
T ss_pred             -----------------------CCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHH
Confidence                                   0123468888884  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 019128          172 ILMRVIS  178 (346)
Q Consensus       172 ll~~~~~  178 (346)
                      |+ ++..
T Consensus       265 Il-~l~s  270 (610)
T COG2905         265 IL-RLFS  270 (610)
T ss_pred             HH-HhhC
Confidence            98 5554

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.1e-13  Score=101.71  Aligned_cols=109  Identities=20%  Similarity=0.240  Sum_probs=90.3

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++.++++++++.+|++.|.+++++.+||+| + |+++|+++.+|+++.+....                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~---------------------------   54 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG---------------------------   54 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC---------------------------
Confidence            578899999999999999999999999998 5 89999999999976532100                           


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                               ......++.++|.  .++.++++++++.++++.|.+.+...+||+++|+++|+++..|++
T Consensus        55 ---------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~  112 (114)
T cd04630          55 ---------RDPDRVNVYEIMT--KPLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIF  112 (114)
T ss_pred             ---------CCCCccCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhh
Confidence                     0011224556664  368899999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.48  E-value=8.5e-13  Score=99.54  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      ++.++++++++.++++.|.+++.+.+||+|+++++|+++..++++..                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~---------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH---------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence            56789999999999999999999999999999999999999986520                                 


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                                ...++.++|.  ..+.++++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus        49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence                      0122445554  368899999999999999999999999999999999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.47  E-value=6.8e-13  Score=125.76  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=103.6

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHH-----cCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  190 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-----~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~  190 (346)
                      ...+++++|++  ++++++++.++.++++.|.+     .+...++|+| +++++|+++.+|++ ..    .  ...++++
T Consensus       129 ~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~a----~--~~~~v~~  199 (449)
T TIGR00400       129 SDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-LA----K--PEEILSS  199 (449)
T ss_pred             CcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-cC----C--CCCcHHH
Confidence            45679999984  89999999999999999975     3456788888 78999999999996 21    1  2457999


Q ss_pred             ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       191 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +|.++++++++++++.++++.|.+++...+||||++|+++|+||.+|+++.+..
T Consensus       200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence            999889999999999999999999999999999999999999999999987543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.47  E-value=1.5e-12  Score=99.10  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=90.1

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++++.++.+|.+.|.+++++.+||+|+|+++|+++..|+.+....                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------   51 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------   51 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence            46788999999999999999999999999998999999999998653210                              


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                               .....++.++|.+  .+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        52 ---------~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~  108 (110)
T cd04595          52 ---------GLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL  108 (110)
T ss_pred             ---------ccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence                     0012345566653  68889999999999999999999999999989999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.1e-12  Score=100.20  Aligned_cols=109  Identities=24%  Similarity=0.312  Sum_probs=90.4

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.+++++.++.++++.|.+++++.+||+| +++++|+++.+++++......                            
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~----------------------------   53 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRG----------------------------   53 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcC----------------------------
Confidence            577899999999999999999999999998 699999999999976431100                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                              ......++.++|.+  ++.+++++.++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        54 --------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  111 (113)
T cd04623          54 --------ASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVV  111 (113)
T ss_pred             --------CCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhh
Confidence                    00012346667753  68889999999999999999999999999889999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.47  E-value=6.4e-13  Score=102.95  Aligned_cols=109  Identities=25%  Similarity=0.320  Sum_probs=93.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC---------CccccccccccccCCeee
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA  199 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v  199 (346)
                      ++.++++++++.++++.|.+.+++++||++ +++++|+++..|+. +......         .....++.++|..++.++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i   80 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence            467899999999999999999999999999 69999999999997 4332110         112356888998899999


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      ++++++.++++.|.+.+..++||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999986 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1e-12  Score=105.26  Aligned_cols=109  Identities=30%  Similarity=0.378  Sum_probs=94.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC---------------------------
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------------------------  182 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~---------------------------  182 (346)
                      +++++++++++.++++.|.+.+++.+||+++++++|+++..|++ +++.....                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            47789999999999999999999999999888999999999997 44332110                           


Q ss_pred             -----ccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          183 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       183 -----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                           ....++.++|..++.++++++++.+++..|.+.+.+++||+++ |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                 0134677888889999999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.46  E-value=9.6e-13  Score=100.78  Aligned_cols=107  Identities=18%  Similarity=0.212  Sum_probs=88.9

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++++++.+|++.|.+++.+.+||+| +|+++|+++..|+++.+...                             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   53 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG-----------------------------   53 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence            467899999999999999999999999998 78999999999987542110                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               .....++.++|.+  .+.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          54 ---------LSLDDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             ---------CCcCCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                     0011235566653  677899999999999999999999999998 78999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.46  E-value=1.5e-12  Score=98.42  Aligned_cols=101  Identities=20%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.+++++.++.+|++.|.+++.+.+||+| +|+++|+++..|+++..                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            577899999999999999999999999998 79999999999986520                                


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                  ..++.++|.+  .+.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus        50 ------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          50 ------------GGCCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             ------------ccchhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence                        0124455543  467799999999999999999999999998 68999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.4e-12  Score=99.56  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=89.0

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.++++.|.+++++.+||+| +|+++|+++..|++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE-----------------------------   52 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence            567899999999999999999999999998 69999999999987542100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                               .....++.++|.  +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus        53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~  109 (111)
T cd04626          53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL  109 (111)
T ss_pred             ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence                     001123555564  368889999999999999999999999999989999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.46  E-value=5e-13  Score=118.71  Aligned_cols=112  Identities=27%  Similarity=0.357  Sum_probs=98.7

Q ss_pred             CCccccccCCCc-eeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          119 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       119 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      .+++++|.+  + +.++.+++++.++++.|.+.+.+++||++ +|+++|+++..|+. +....+.. ...+++++|.+++
T Consensus       155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~~  230 (268)
T TIGR00393       155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLGP  230 (268)
T ss_pred             hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCCC
Confidence            468889975  4 88899999999999999999999999999 78999999999997 55443222 2567999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEe
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD  234 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit  234 (346)
                      .++++++++.++++.|.+++...+||+|++|+++|+|+
T Consensus       231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            99999999999999999999999999999999999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.46  E-value=1.1e-12  Score=99.26  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI  205 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l  205 (346)
                      ....++++.++.++.+.+.+.+...+||+++    ++++|+++.+|+. +....           +|.+++.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~l   70 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTSL   70 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCcH
Confidence            4678899999999999999998899999985    7899999999996 43321           777889999999999


Q ss_pred             HHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          206 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       206 ~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus        71 ~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          71 EKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            9999999999999999995 799999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.4e-12  Score=99.98  Aligned_cols=110  Identities=25%  Similarity=0.408  Sum_probs=90.6

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+++++.+||++ +++++|+++..++++.+.....                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY---------------------------   54 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence            577899999999999999999999999998 7899999999999875432110                           


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                              ......++.++|.+  ++.++.+++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        55 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  112 (114)
T cd04629          55 --------HCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL  112 (114)
T ss_pred             --------ccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence                    00112345566653  67889999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.5e-12  Score=103.25  Aligned_cols=131  Identities=21%  Similarity=0.278  Sum_probs=93.8

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..|+++........... .........             
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~-~~~~~~~~~-------------   67 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLP-KKSIKMKRK-------------   67 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccc-hhhhhhhhh-------------
Confidence            567899999999999999999999999999 69999999999998753211000000 000000000             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                      ..........+...++.++|.+  ++..+.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus        68 ~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~  133 (135)
T cd04621          68 AGQKRYRYVKEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC  133 (135)
T ss_pred             cccccccccccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence            0000000011234467888864  67889999999999999999999999999989999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.45  E-value=1.5e-12  Score=101.35  Aligned_cols=119  Identities=22%  Similarity=0.286  Sum_probs=93.1

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++++++++++++.++.+.|.+++++.+||++ +|+++|+++..+++.........                         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-------------------------   56 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-------------------------   56 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence            5788999999999999999999999999998 69999999999987643211000                         


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                        .....+.......++.++|..  .++++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        57 --~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          57 --PLRGRLRGRDKPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             --hhhhhhhcccccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence              000000011123346777753  788999999999999999999999999999 89999999999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.8e-12  Score=97.97  Aligned_cols=109  Identities=22%  Similarity=0.302  Sum_probs=88.6

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      ++.++++++++.+|++.|.+++...++|.++|+++|+++..|+++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG-----------------------------   52 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence            567899999999999999888888888777899999999999976531100                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                             ......++.++|.  ..+.++.+++++.++++.|.+++..++||+++|+++|++|.+|++
T Consensus        53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~  110 (112)
T cd04625          53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA  110 (112)
T ss_pred             -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence                   0001134666665  357889999999999999999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.3e-12  Score=100.28  Aligned_cols=116  Identities=21%  Similarity=0.191  Sum_probs=88.3

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++.++++++++.+|++.|.+++++++||+| + |+++|+++..|+++...........                      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~----------------------   59 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG----------------------   59 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc----------------------
Confidence            567899999999999999999999999998 5 8999999999998754322110000                      


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                          ......  ......++|.  .++.++++++++.++++.|.+++.+++||++ +++++|+||.+|+
T Consensus        60 ----~~~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          60 ----LDPLYP--IPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             ----hhhhhh--hhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence                000000  0011223444  3688999999999999999999999999998 7899999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.44  E-value=8.3e-13  Score=125.46  Aligned_cols=115  Identities=12%  Similarity=0.134  Sum_probs=98.1

Q ss_pred             ccccccc---CCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           19 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        19 ~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      +|+++|.   .++.++++++|+.+|++.|.+++++.+||+|+    ++++|+||..|+...                   
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-------------------  155 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-------------------  155 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence            4677775   45679999999999999999999999999984    799999999997421                   


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  170 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~  170 (346)
                                            ......+++++|++..+++++++++++.+|+++|.++++..+||+| +++++|+||.+
T Consensus       156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~  213 (502)
T PRK07107        156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK  213 (502)
T ss_pred             ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence                                  0012356888998655789999999999999999999999999999 78999999999


Q ss_pred             HHHH
Q 019128          171 DILM  174 (346)
Q Consensus       171 dll~  174 (346)
                      |+++
T Consensus       214 Dilk  217 (502)
T PRK07107        214 DYDS  217 (502)
T ss_pred             HHHh
Confidence            9983

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.44  E-value=1.6e-12  Score=98.72  Aligned_cols=103  Identities=14%  Similarity=0.249  Sum_probs=88.0

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      .++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------   50 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence            3678899999999999999999999999998 79999999999985320                               


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                  ...++.++|.  ..+.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus        51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                        0123455554  3688899999999999999999999999998 78999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.7e-12  Score=98.90  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+.+.+.+||++ +|+++|+++..++.+.....                             
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG-----------------------------   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence            567899999999999999988999999999 69999999999987642110                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                ....++.++|.  .++.++++++++.++++.|.+++...+||++ +|+++|++|.+|+.
T Consensus        53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence                      01123555564  3688899999999999999999999999999 59999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.44  E-value=1.4e-12  Score=103.33  Aligned_cols=131  Identities=21%  Similarity=0.305  Sum_probs=94.5

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      +++.++++++++.+|++.|.+++++++||+| +++++|+++..++++...........         ......     ..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~---------~~~~~~-----~~   67 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRA---------RWLDLL-----AG   67 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhh---------hHHHHh-----cc
Confidence            5788999999999999999999999999999 68999999999997643211000000         000000     00


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                      ........ ......++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        68 ~~~~~~~~-~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~  133 (135)
T cd04586          68 AEELAAAF-VRSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL  133 (135)
T ss_pred             hHHHHHHH-HHhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence            00000000 01223457788864  68899999999999999999999999999989999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.44  E-value=2.7e-12  Score=97.88  Aligned_cols=109  Identities=24%  Similarity=0.321  Sum_probs=90.1

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++.+++++.++.+|.+.|.+++++.+||+|+++++|+++..++++.....                             
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE-----------------------------   51 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence            357889999999999999999999999999989999999999987542110                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                              ......++.++|.  .+++++++++++.++++.|.+.+.+++||+++|+++|++|.+|++
T Consensus        52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~  109 (111)
T cd04800          52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL  109 (111)
T ss_pred             --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence                    0001123555564  368899999999999999999999999999989999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.43  E-value=2.6e-12  Score=98.67  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=88.9

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.++++.|.+.+.+.+||+| +|+++|+++.+|+.+......                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~----------------------------   53 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE----------------------------   53 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----------------------------
Confidence            567889999999999999999999999999 699999999999876421100                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C--CEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~--~~~~Giit~~dll  173 (346)
                               .....++.++|.  ..+.++.+++++.++++.|.+++...+||++ +  |+++|++|.+|++
T Consensus        54 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~  113 (115)
T cd04593          54 ---------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL  113 (115)
T ss_pred             ---------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence                     001122455554  3688899999999999999999999999998 4  7999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3e-12  Score=99.19  Aligned_cols=119  Identities=24%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++++++++++++.++++.|.+++++.+||+|+|+++|+++..++.+.........                         
T Consensus         1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~-------------------------   55 (121)
T cd04633           1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV-------------------------   55 (121)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc-------------------------
Confidence            3678899999999999999999999999999999999999999976532111000                         


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                        +...........++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        56 --~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~  119 (121)
T cd04633          56 --RDRHQERRIRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL  119 (121)
T ss_pred             --cchhhhhhhhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence              00000111223346666753  68899999999999999999999999999889999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.43  E-value=1e-12  Score=128.72  Aligned_cols=123  Identities=12%  Similarity=0.152  Sum_probs=102.5

Q ss_pred             CCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           14 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        14 ~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      .+..++++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.....                
T Consensus       443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~----------------  506 (574)
T PRK01862        443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK----------------  506 (574)
T ss_pred             HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc----------------
Confidence            4667899999999999999999999999999999999999999 78999999999987642110                


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C--CEEEEEeeH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTS  169 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~--~~~~Giit~  169 (346)
                                           +.....++.++|.+  ++.++++++++.++++.|.+++.+.+||+| +  ++++|++|.
T Consensus       507 ---------------------~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~  563 (574)
T PRK01862        507 ---------------------RDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK  563 (574)
T ss_pred             ---------------------cccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence                                 00011245667753  678899999999999999999999999998 4  489999999


Q ss_pred             HHHHHH
Q 019128          170 KDILMR  175 (346)
Q Consensus       170 ~dll~~  175 (346)
                      +|+++.
T Consensus       564 ~DIl~~  569 (574)
T PRK01862        564 TSLLDA  569 (574)
T ss_pred             HHHHHH
Confidence            999843

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.43  E-value=3.9e-12  Score=96.80  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=89.0

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++++++++++++.+|++.|.+++++.+||+++|+++|+++..++++.....                             
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG-----------------------------   51 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence            367889999999999999999999999999889999999999987642100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                ....++.++|.  .++.++++++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus        52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  108 (110)
T cd04588          52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL  108 (110)
T ss_pred             ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence                      00123445554  3688999999999999999999999999998 59999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.43  E-value=4.5e-12  Score=96.45  Aligned_cols=105  Identities=28%  Similarity=0.412  Sum_probs=88.4

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++++++++++++.++++.|.+++...+||+| +|+++|+++.+++++.....                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD----------------------------   53 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence            5788999999999999999999999999998 68999999999987542100                            


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                   ..++.++|.  .++.++++++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus        54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                         012444554  3688899999999999999999999999998 78999999999985

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=4.3e-12  Score=96.91  Aligned_cols=109  Identities=22%  Similarity=0.288  Sum_probs=89.5

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      ++.++++++++.++++.|.+++.+.+||+++++++|+++..|+++......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN-----------------------------   52 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence            567899999999999999999999999999779999999999986432100                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                             ......++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus        53 -------~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~  110 (112)
T cd04802          53 -------LKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV  110 (112)
T ss_pred             -------CCcccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence                   00112345666653  68889999999999999999999999999966999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=4.6e-12  Score=96.86  Aligned_cols=108  Identities=26%  Similarity=0.349  Sum_probs=89.8

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++.+++++.+|++.|.+++.+.+||+| +|+++|+++..|+.+.....                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-----------------------------   52 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence            467899999999999999999999999998 68999999999987642210                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                              +.....++.++|.+  ++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        53 --------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~  111 (113)
T cd04615          53 --------EELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL  111 (113)
T ss_pred             --------hhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence                    01122345666653  688899999999999999999999999998 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.42  E-value=2.5e-12  Score=122.83  Aligned_cols=122  Identities=19%  Similarity=0.216  Sum_probs=101.8

Q ss_pred             HHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccc
Q 019128          114 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  192 (346)
Q Consensus       114 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  192 (346)
                      ..+...+++++|.+  ++.++.+++++.++++.|.+++++.+||+| +++++|+||.+|++ +.+.........++.++|
T Consensus       330 ~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~im  406 (454)
T TIGR01137       330 DVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL-SALFAGKANPDDAVSKVM  406 (454)
T ss_pred             HHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHhccCCCcCCCHHHhc
Confidence            34566789999974  789999999999999999999999999998 78999999999997 443332222245799999


Q ss_pred             ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          193 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       193 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .+++.++++++++.++++.|.+++   .|||+++|+++|+||..|++++
T Consensus       407 ~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       407 SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence            988999999999999999998864   3556567999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.42  E-value=4.2e-12  Score=95.75  Aligned_cols=99  Identities=20%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             eeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChhhH
Q 019128           29 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF  108 (346)
Q Consensus        29 i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  108 (346)
                      +++++++++.+|++.|.+.++..+||+|+|+++|+++..++....                                   
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~-----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT-----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence            478999999999999999999999999889999999999986420                                   


Q ss_pred             HHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          109 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       109 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                               ..++.++|.  ..+.+++++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~  102 (104)
T cd04594          49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL  102 (104)
T ss_pred             ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence                     012344454  357889999999999999999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.42  E-value=4.7e-12  Score=96.05  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=88.4

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      +++.+++++.++.++++.|.++++..+||+| +|+++|+++..|+.....                              
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------   51 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------   51 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence            4678899999999999999999999999998 689999999999865310                              


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                  ...++.++|.  ..+.++++++++.++++.|.+.+.+++||++ +|+++|++|.+|++
T Consensus        52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence                        0123455554  3678899999999999999999999999998 78999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=4.4e-12  Score=96.70  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=89.4

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      +++++++++++.+|.+.|.+++...+||+|+|+++|+++..+++......                              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence            56789999999999999999999999999888999999999987542100                              


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                             ......++.++|.  .++..+++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus        52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~  109 (111)
T cd04589          52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL  109 (111)
T ss_pred             -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence                   0011234556665  368889999999999999999999999999989999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3.8e-12  Score=97.17  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+++++.+||+| +|+++|+++..++++.+...                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG-----------------------------   52 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence            567899999999999999999999999998 69999999999987653210                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               .....++.++|.+  ++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus        53 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~  110 (112)
T cd04624          53 ---------IDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV  110 (112)
T ss_pred             ---------CCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence                     0012235566653  688899999999999999999999999998 69999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.42  E-value=4.9e-12  Score=96.30  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      ++.++++++++.+|++.|.+++++.+||+++++++|+++.+|+.+......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~-----------------------------   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP-----------------------------   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence            567899999999999999999999999999899999999999876421000                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               -...++.++|.  .+++++++++++.++++.|.+.+.+.+||++ +|+++|+++.+|++
T Consensus        53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence                     01234556664  3688899999999999999999999999998 69999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK11573 hypothetical protein; Provisional

Probab=99.41  E-value=3.4e-12  Score=119.24  Aligned_cols=133  Identities=12%  Similarity=0.169  Sum_probs=107.2

Q ss_pred             HHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeeeC--CeEEEEEehHHHHHHHHHHHHHHHh
Q 019128            7 RVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE   82 (346)
Q Consensus         7 ~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGivt~~dll~~~~~~~~~~~~   82 (346)
                      .++.+..++.+.+|+++|+  .++++++.++++.++++.+.+++++++||+++  ++++|++..+|++.......     
T Consensus       176 ~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-----  250 (413)
T PRK11573        176 DMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-----  250 (413)
T ss_pred             HHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-----
Confidence            3555666999999999999  57899999999999999999999999999973  78999999999986421000     


Q ss_pred             hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 019128           83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  161 (346)
Q Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~  161 (346)
                                        . .    ...         ++.+++   +++.+++++.++.++++.|.+++.+...|+| .|
T Consensus       251 ------------------~-~----~~~---------~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG  295 (413)
T PRK11573        251 ------------------E-F----TKE---------NMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG  295 (413)
T ss_pred             ------------------c-C----CHH---------HHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC
Confidence                              0 0    000         122333   3588999999999999999999999999999 79


Q ss_pred             EEEEEeeHHHHHHHHHhc
Q 019128          162 KPRGILTSKDILMRVISQ  179 (346)
Q Consensus       162 ~~~Giit~~dll~~~~~~  179 (346)
                      ...|+||..|++..+..+
T Consensus       296 ~~~GiVTleDilEeivGe  313 (413)
T PRK11573        296 DIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             CeEEEeeHHHHHHHHhCC
Confidence            999999999999666654

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4e-12  Score=100.31  Aligned_cols=128  Identities=17%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++++++.+|++.|.+++++++||+| +|+++|+++..++++..........               ..+......
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~   66 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF   66 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence            578899999999999999999999999998 6899999999999875321100000               000000000


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                      ..  ....+.....++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        67 ~~--~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~  130 (132)
T cd04636          67 LD--ESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII  130 (132)
T ss_pred             cc--hHHHHHHcCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence            00  112223334467888864  68889999999999999999999999999989999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.41  E-value=3.9e-12  Score=98.26  Aligned_cols=110  Identities=20%  Similarity=0.297  Sum_probs=91.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCC---CccccccccccccCCeeecCCCCH
Q 019128          130 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI  205 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~-~~~l~V~d~~~~~Giit~~dll~~~~~~~~---~~~~~~v~~~m~~~~~~v~~~~~l  205 (346)
                      ++.++++++++.++++.|...+ ++.+||+++|+++|+++..|++ ++.....   .....++.++|..++.++++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            4567899999999999998877 8899999889999999999997 4433210   011457889999999999999999


Q ss_pred             HHHHHHhHhCCCc---eeEEEcCCCcEEEEEehHHHHH
Q 019128          206 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       206 ~~~~~~m~~~~~~---~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .+++..|.+++..   ..+|++++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999988764   4478888999999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.41  E-value=1.1e-12  Score=102.41  Aligned_cols=109  Identities=22%  Similarity=0.349  Sum_probs=88.5

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++++++++++++.+|++.|.+++++.+||+| +|+++|+++..+++......                            
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~----------------------------   53 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG----------------------------   53 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh----------------------------
Confidence            4688999999999999999999999999998 68999999999987643211                            


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH---------cCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE---------LRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~---------~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               ......+++++|.+  ++.++.+++++.++.+++..         .+...+||++ +|+++|+||.+|++
T Consensus        54 ---------~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~  121 (124)
T cd04608          54 ---------KVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL  121 (124)
T ss_pred             ---------ccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence                     00123467888874  78899999999999996532         3566778887 68999999999997

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.41  E-value=4.8e-12  Score=96.46  Aligned_cols=105  Identities=16%  Similarity=0.202  Sum_probs=86.7

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      +++++++++++.+|++.|.+++++.+||++ + |+++|+++..++++.....                            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG----------------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence            578899999999999999999999999998 6 8999999999987642100                            


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                 .....+.++|.   ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 -----------~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          54 -----------EEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             -----------CCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence                       00012333443   467899999999999999999999999999 69999999999986

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4.5e-12  Score=98.79  Aligned_cols=120  Identities=28%  Similarity=0.371  Sum_probs=91.5

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  103 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  103 (346)
                      +++.+++++.++.+|++.|.+++++.+||+| + |+++|+++..++++.+...........                   
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~-------------------   61 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT-------------------   61 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccc-------------------
Confidence            4678899999999999999999999999998 5 899999999999865321110000000                   


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                             .........++.++|.  ..+.++++++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus        62 -------~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~  123 (125)
T cd04631          62 -------GNGLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL  123 (125)
T ss_pred             -------cccchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence                   0000011234566665  3688999999999999999999999999998 59999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.41  E-value=3.5e-12  Score=97.54  Aligned_cols=108  Identities=21%  Similarity=0.251  Sum_probs=89.5

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.++++.|.+++++.+||+| +|+++|+++..++.+.....                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP-----------------------------   52 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence            577899999999999999999999999999 68999999999987542100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC--CEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~--~~~~Giit~~dll  173 (346)
                              ......++.++|.+  ++.++++++++.++++.|.+.+.+.+||+++  ++++|++|.+|++
T Consensus        53 --------~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          53 --------SLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             --------cccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence                    00011345666653  6889999999999999999999999999986  8999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.4e-12  Score=97.41  Aligned_cols=111  Identities=15%  Similarity=0.251  Sum_probs=87.7

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++++++.+|++.|.+++++.+||+| +|+++|+++.+++++.......                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~---------------------------   54 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN---------------------------   54 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc---------------------------
Confidence            578899999999999999999999999998 6899999999999765321000                           


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                          .... .+...++.++|.+  .+.++++++++.++++.|.+.+  .+||++ +++++|++|..|++
T Consensus        55 ----~~~~-~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil  114 (116)
T cd04643          55 ----LDLE-RLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL  114 (116)
T ss_pred             ----hhHH-HHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence                0000 0123456677764  6888999999999999998755  589998 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.40  E-value=1.5e-11  Score=117.18  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=97.3

Q ss_pred             ccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           22 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        22 dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      ..|.++++++++++|+.+|+++|.+++++.+||+|+    |+++|+||..|+....                        
T Consensus       104 ~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------  159 (505)
T PLN02274        104 VGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------  159 (505)
T ss_pred             ccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence            347789999999999999999999999999999985    7999999999984310                        


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                                        ....++.++|++...++++++++++.++++.|.+++...+||++ +++++|+||.+|++ +.
T Consensus       160 ------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIl-k~  220 (505)
T PLN02274        160 ------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVK-RV  220 (505)
T ss_pred             ------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HH
Confidence                              12345788887644488999999999999999999999999998 89999999999998 44


Q ss_pred             H
Q 019128          177 I  177 (346)
Q Consensus       177 ~  177 (346)
                      .
T Consensus       221 ~  221 (505)
T PLN02274        221 K  221 (505)
T ss_pred             h
Confidence            4

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.7e-12  Score=99.59  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=88.6

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+.+..........                     ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~---------------------~~~   60 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL---------------------YRT   60 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc---------------------ccc
Confidence            577899999999999999999999999998 6999999999998764321100000                     000


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                      ..+. .+..  ......+.|.  .++.++++++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus        61 ~~~~-~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil  124 (126)
T cd04642          61 ITFK-ELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII  124 (126)
T ss_pred             hhhh-hhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence            0000 0000  0011223343  3688999999999999999999999999999 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.40  E-value=2.4e-12  Score=112.29  Aligned_cols=114  Identities=17%  Similarity=0.279  Sum_probs=101.3

Q ss_pred             cccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           18 TPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        18 ~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      .+|.|+|+  .+..++.+++++.+..++-.+.+.+++||+| ..+++|+||.+|++..                      
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~----------------------  245 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK----------------------  245 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC----------------------
Confidence            68999999  7888999999999999999999999999999 7899999999998643                      


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                           ....++..+|+  ++++++.+.+++..+.+.|...++..+||++ +.+++|+||++|++
T Consensus       246 ---------------------~~~t~ieKVMt--knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvl  302 (432)
T COG4109         246 ---------------------KPSTTIEKVMT--KNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVL  302 (432)
T ss_pred             ---------------------CCCccHHHHhc--cCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHH
Confidence                                 22344566676  4799999999999999999999999999999 89999999999998


Q ss_pred             HHH
Q 019128          174 MRV  176 (346)
Q Consensus       174 ~~~  176 (346)
                      ..+
T Consensus       303 k~l  305 (432)
T COG4109         303 KSL  305 (432)
T ss_pred             HHH
Confidence            444

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.40  E-value=6.9e-12  Score=95.46  Aligned_cols=108  Identities=23%  Similarity=0.286  Sum_probs=88.8

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++++++++++++.++++.|.+.+++.+||+|+++++|+++..|+.+......                            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   52 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR----------------------------   52 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence            3678899999999999999999999999998899999999999876421000                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                .....+.++|.  .++.++.+++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus        53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  109 (111)
T cd04612          53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL  109 (111)
T ss_pred             ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                      00012445554  3688999999999999999999999999999 69999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.40  E-value=4.6e-12  Score=96.82  Aligned_cols=109  Identities=16%  Similarity=0.207  Sum_probs=89.4

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      ++.++.+++++.++++.|.+++.+.+||+++|+++|+++..|++......                      +       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~----------------------~-------   52 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ----------------------G-------   52 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc----------------------C-------
Confidence            57789999999999999999999999999889999999999987532210                      0       


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                             ......++.++|.+  .+.++++++++.++++.|.+++..++||++ +++++|++|..|++
T Consensus        53 -------~~~~~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          53 -------LDPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT  111 (113)
T ss_pred             -------CCcCcCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence                   00001346667753  678899999999999999999999999998 68999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=7.3e-12  Score=94.68  Aligned_cols=103  Identities=27%  Similarity=0.399  Sum_probs=90.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  208 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  208 (346)
                      ++.++.++.++.+++..|.+.+++++||++ +++++|+++.++++ ..  .    ...++.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~--~----~~~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN--P----EEEQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc--c----ccchHHHHhcCCCceECCCCCHHHH
Confidence            467889999999999999999999999998 68999999999996 31  1    1245778888889999999999999


Q ss_pred             HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            99999999999999984 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.39  E-value=6.2e-12  Score=97.32  Aligned_cols=119  Identities=27%  Similarity=0.376  Sum_probs=92.2

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++.+++++.++.+|++.|.+.++..+||+|+|+++|+++..++..........                     . . .
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~---------------------~-~-~   57 (122)
T cd04585           1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATT---------------------L-D-I   57 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccc---------------------c-c-c
Confidence            357789999999999999999999999999989999999999997642110000                     0 0 0


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                      .    .........++.++|.+  ++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        58 ~----~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~  120 (122)
T cd04585          58 W----ELYYLLSKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF  120 (122)
T ss_pred             h----hhhhhhcccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence            0    00000123456677764  688999999999999999999999999999 59999999999997

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=5.8e-12  Score=97.74  Aligned_cols=117  Identities=24%  Similarity=0.387  Sum_probs=91.0

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++.+++++.+|++.|.+.+++.+||++ +|+++|+++..++++.........                  +.+    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~------------------~~~----   59 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN------------------GEE----   59 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc------------------ccc----
Confidence            578899999999999999999999999998 599999999999876532110000                  000    


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                           .. ......++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        60 -----~~-~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          60 -----SL-TKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             -----cc-ccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence                 00 0112334566665  3688999999999999999999999999999 58999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.39  E-value=7.9e-12  Score=94.52  Aligned_cols=103  Identities=21%  Similarity=0.343  Sum_probs=87.5

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++++.+.++.++++.|.+++...+||+|+++++|+++..+++..                                 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~---------------------------------   48 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK---------------------------------   48 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence            46788999999999999999888889999988999999999998531                                 


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                ....++.++|.+  .+.++.+++++.++++.|.+++..++||++ +|+++|+++..|++
T Consensus        49 ----------~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~  105 (107)
T cd04610          49 ----------DPDETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI  105 (107)
T ss_pred             ----------CccccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence                      001235556643  578899999999999999999999999998 78999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=3.7e-12  Score=99.67  Aligned_cols=116  Identities=20%  Similarity=0.253  Sum_probs=85.6

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++++.+++++.+|++.|.+++.+.+||+| +|+++|+++..|+.+....+.....                        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~------------------------   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG------------------------   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc------------------------
Confidence            467899999999999999999999999998 6899999999998753110000000                        


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEe----CCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v----~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll  173 (346)
                             .......++.++|.+....+.+    .+++++.++++.|.+++.+.+||++ + |+++|+||..|++
T Consensus        58 -------~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~  124 (126)
T cd04640          58 -------GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             -------CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence                   0001123356677531112233    3688999999999999999999999 5 7999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.8e-12  Score=97.14  Aligned_cols=108  Identities=18%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             CCeeecCCccHHHHHHHHHhCC-cceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.++++.|.+++ .+.+||.++|+++|+++..|+++......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK----------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence            5678999999999999998888 67788888899999999999976421000                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCC--CcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               .....++.++|.+  +++++.++  +++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~  113 (115)
T cd04620          54 ---------DLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR  113 (115)
T ss_pred             ---------CccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence                     0011335566653  57778776  7899999999999999999998 78999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.39  E-value=1e-11  Score=95.52  Aligned_cols=112  Identities=25%  Similarity=0.338  Sum_probs=94.0

Q ss_pred             cccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCC
Q 019128           21 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGT  100 (346)
Q Consensus        21 ~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  100 (346)
                      .++|.++++++.++.++.+|...|.++++..+||++.++++|++|..|+++.......                      
T Consensus         2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~----------------------   59 (117)
T COG0517           2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK----------------------   59 (117)
T ss_pred             cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC----------------------
Confidence            3455688999999999999999999999999999997799999999999876432100                      


Q ss_pred             CCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH-cCCcEEEEEe-CC-EEEEEeeHHHH
Q 019128          101 SISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI  172 (346)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-~~~~~l~V~d-~~-~~~Giit~~dl  172 (346)
                                      ...++.++|..  +++++.++.++.++.+.|.+ ++++.+||++ ++ +++|++|.+|+
T Consensus        60 ----------------~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          60 ----------------RLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             ----------------ccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence                            00046667763  68899999999999999999 7999999999 54 99999999997

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.38  E-value=2.7e-12  Score=114.07  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=94.7

Q ss_pred             ccccccccCC-CeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           18 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        18 ~~v~dim~~~-~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      ++|+++|.++ +.++++++++.+|++.|.+.+++.+||+| +|+++|+++..|+.+....                    
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~--------------------  214 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG--------------------  214 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence            7899999988 99999999999999999999999999999 7999999999998763110                    


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEee
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  168 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit  168 (346)
                                        ......++.++|.+  ++.++.+++++.++++.|.+.+...+||++ +|+++|+|+
T Consensus       215 ------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       215 ------------------GGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------------CCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                              00112446777764  688899999999999999999999999998 789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=9.4e-12  Score=95.10  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=89.4

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +++.++++++++.+|++.|.+++++.+||+|+|+++|+++..+++......                      +      
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~------   52 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G------   52 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c------
Confidence            357889999999999999999999999999999999999999986321100                      0      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                              ......++.++|..  .+.++.+++++.++++.|.+.+.+++||++ +|+++|++|..|++
T Consensus        53 --------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          53 --------RDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             --------CCcccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence                    00111236666653  688899999999999999999999999998 68999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.3e-11  Score=96.65  Aligned_cols=121  Identities=29%  Similarity=0.355  Sum_probs=91.0

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|+++|.+.+.+.+||+| +|+++|+++..|+...+..........                      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~----------------------   59 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTG----------------------   59 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchh----------------------
Confidence            567899999999999999999999999998 699999999999876432211000000                      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll  173 (346)
                       ... .-.......++.++|.+  +++++++++++.++++.|.+.+...+||++   +++++|+||.+|++
T Consensus        60 -~~~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          60 -DRS-GEKERMLDLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             -hhh-hhhhhhccCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence             000 00011223346677753  688999999999999999999999999985   48999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.38  E-value=1.5e-11  Score=117.06  Aligned_cols=114  Identities=10%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      +.++.|..+++++++++|+.+|+++|.+++++.+||+|+    ++++|+|+.+|+...                      
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~----------------------  154 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV----------------------  154 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc----------------------
Confidence            366788899999999999999999999999999999984    799999999997521                      


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                        .  ....++.++|++..+++++++++++.+++++|.+++...+||+| +++++|+||.+|++
T Consensus       155 ------------------~--~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl  214 (495)
T PTZ00314        155 ------------------K--DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK  214 (495)
T ss_pred             ------------------c--cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence                              0  01345778887545789999999999999999999999999999 88999999999998


Q ss_pred             H
Q 019128          174 M  174 (346)
Q Consensus       174 ~  174 (346)
                      +
T Consensus       215 ~  215 (495)
T PTZ00314        215 K  215 (495)
T ss_pred             h
Confidence            3

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.37  E-value=7.3e-12  Score=95.81  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=89.1

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.++++.|.+.+.+.+||+| +|+++|+++..++.+.+....                            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----------------------------   54 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----------------------------   54 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----------------------------
Confidence            466789999999999999988899999998 689999999999876432100                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               .....++.++|.+  .+.++++++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus        55 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~  112 (114)
T cd04604          55 ---------DILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL  112 (114)
T ss_pred             ---------ccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence                     0111246666654  577899999999999999999999999998 89999999999996

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.8e-11  Score=94.96  Aligned_cols=118  Identities=27%  Similarity=0.292  Sum_probs=90.3

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      +++++++++++.+|++.|.+++++.+||+|+|+++|+++..++.+.+.........                     .  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~---------------------~--   58 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGE---------------------T--   58 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccc---------------------h--
Confidence            57789999999999999999999999999989999999999998754321100000                     0  


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                        .....  ....++.++|.  .+++++++++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus        59 --~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll  120 (122)
T cd04637          59 --EKDLA--TLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL  120 (122)
T ss_pred             --HHHHH--HHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence              00000  00112445554  3688999999999999999999999999998 68999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1e-11  Score=96.37  Aligned_cols=118  Identities=23%  Similarity=0.403  Sum_probs=90.6

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++++++++++++.++++.|.+++++.+||+| +|+++|+++..++++........                         
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~-------------------------   55 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV-------------------------   55 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence            3678899999999999999999999999999 69999999999987631100000                         


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                      ..   ..........++.++|.  .++..+++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        56 ~~---~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~  120 (122)
T cd04635          56 ED---QQRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL  120 (122)
T ss_pred             cc---hhhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence            00   00000012234556665  3688899999999999999999999999998 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.7e-11  Score=98.19  Aligned_cols=140  Identities=18%  Similarity=0.247  Sum_probs=94.9

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHh-hhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE-KGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      ++++++++++++.++++.|.+++++.+||+|+|+++|+++..++++.+......... ...........+.     ....
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   75 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR-----EFIN   75 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch-----heee
Confidence            467899999999999999999999999999889999999999987654221100000 0000000000000     0000


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                      ...+.....+ ....++.++|.+  .+.++++++++.+++..|.+.+.+.+||+++++++|++|.+|++
T Consensus        76 ~~~~~~~~~~-~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~  141 (143)
T cd04634          76 WEETKRALTD-AGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII  141 (143)
T ss_pred             hHHHHHHHHH-HhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence            0011111111 123457777864  68899999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.36  E-value=1.7e-11  Score=93.96  Aligned_cols=103  Identities=16%  Similarity=0.254  Sum_probs=84.4

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  102 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  102 (346)
                      ++.++++++++.+|++.|.+++...+||+|+    |+++|+++..|+....                             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-----------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence            5678999999999999999999999999984    8999999999875320                             


Q ss_pred             CChhhHHHHHHHHhCCCCccccccCCCceeEe--CCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          103 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v--~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                   ....+++++|..  ...++  ++++++.++++.|.+++...+||++ +++++|++|.+|++
T Consensus        54 -------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          54 -------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             -------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence                         011235666654  34445  4599999999999999999999998 78999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.35  E-value=9.4e-12  Score=117.79  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=97.7

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-C---CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      +.++.|.++++++++++++.+|+++|.+++++.+||+| +   ++++|+|+.+|++...                     
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------------------  139 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------------------  139 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence            55778888999999999999999999999999999999 4   6999999999985320                     


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                           ....++.++|.+ .+++++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++
T Consensus       140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl  197 (450)
T TIGR01302       140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV  197 (450)
T ss_pred             ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence                                 012346677762 3689999999999999999999999999999 89999999999998


Q ss_pred             H
Q 019128          174 M  174 (346)
Q Consensus       174 ~  174 (346)
                      +
T Consensus       198 ~  198 (450)
T TIGR01302       198 K  198 (450)
T ss_pred             h
Confidence            3

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.35  E-value=2.3e-11  Score=94.17  Aligned_cols=117  Identities=26%  Similarity=0.363  Sum_probs=90.7

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+++++.+||+| +|+++|+++..++.+.........                         
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~-------------------------   56 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL-------------------------   56 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc-------------------------
Confidence            567899999999999999999999999999 699999999999865421110000                         


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                        ..... ......++.++|.+  .+.++++++++.++++.|.+.+.+.+||+++++++|++|.+|++
T Consensus        57 --~~~~~-~~~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~  119 (121)
T cd04584          57 --SEHEL-YLLLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL  119 (121)
T ss_pred             --hhhhh-hhhcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence              00000 01223446666653  68889999999999999999999999999889999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.34  E-value=1.1e-11  Score=94.24  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=81.8

Q ss_pred             eecCCccHHHHHHHHHhCC-----cceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128           30 FVLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  103 (346)
Q Consensus        30 ~v~~~~~l~ea~~~m~~~~-----~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  103 (346)
                      ++++++++.++++.|.+++     +..+||+| +|+++|+++.+++++.-                              
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------   50 (109)
T cd04606           1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------   50 (109)
T ss_pred             CccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC------------------------------
Confidence            3578999999999998877     47899998 68999999998875410                              


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                   ...++.++|.  .++.++.+++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus        51 -------------~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll  106 (109)
T cd04606          51 -------------PDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI  106 (109)
T ss_pred             -------------CcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence                         0122445554  3688899999999999999999999999998 79999999999997

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.33  E-value=2.4e-11  Score=91.88  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCC
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  102 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  102 (346)
                      ....+++++++.++.+.|.+++++.+||+++    |+++|+++.+++.+...                            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~----------------------------   54 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK----------------------------   54 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence            4567899999999999999999999999985    89999999999865310                            


Q ss_pred             CChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          103 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                                 .         +|.  .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        55 -----------~---------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~  103 (105)
T cd04591          55 -----------N---------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL  103 (105)
T ss_pred             -----------H---------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence                       0         343  367889999999999999999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.32  E-value=7.2e-11  Score=111.35  Aligned_cols=132  Identities=16%  Similarity=0.257  Sum_probs=107.8

Q ss_pred             HHHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHH
Q 019128            6 TRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAA   81 (346)
Q Consensus         6 ~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~   81 (346)
                      ++++++..++.+.+|+++|+  .++++++.+.++.++.+.+.+++++++||++  .+.++|++..+|++........   
T Consensus       194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---  270 (429)
T COG1253         194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---  270 (429)
T ss_pred             HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence            44566667999999999999  5688899999999999999999999999998  3789999999999886421100   


Q ss_pred             hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128           82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E  160 (346)
Q Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~  160 (346)
                                                          .......+   .+++.++++.++.++++.|.+.+.+...|+| .
T Consensus       271 ------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         271 ------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             ------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence                                                00011111   2588999999999999999999999999999 7


Q ss_pred             CEEEEEeeHHHHHHHHHhc
Q 019128          161 NKPRGILTSKDILMRVISQ  179 (346)
Q Consensus       161 ~~~~Giit~~dll~~~~~~  179 (346)
                      |.+.|+||..|++..+..+
T Consensus       312 G~~~GlVTleDIiEeIvGe  330 (429)
T COG1253         312 GGVEGLVTLEDIIEEIVGE  330 (429)
T ss_pred             CCeEEEeEHHHHHHHHhCC
Confidence            9999999999999655543

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.32  E-value=2e-11  Score=92.76  Aligned_cols=104  Identities=23%  Similarity=0.356  Sum_probs=85.2

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  104 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  104 (346)
                      +++.++++++++.++++.|.+++.+.+||+| +|+++|+++..++....                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------   50 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence            4678899999999999999999999999998 68999999998875310                               


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCC-CCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                 ....++.++|..  .+..+.+ ++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        51 -----------~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil  108 (110)
T cd04601          51 -----------DLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE  108 (110)
T ss_pred             -----------cCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence                       011235556643  3455555 99999999999999999999998 79999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.32  E-value=1.8e-11  Score=116.87  Aligned_cols=118  Identities=25%  Similarity=0.346  Sum_probs=96.8

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      ++..+++++|.+++.++.+++++.++++.|.+++++.+||+| +++++|+|+..|+++.+...                 
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------  394 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG-----------------  394 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence            677899999999999999999999999999999999999998 68999999999987642210                 


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                                          ......++.++|.+  ++.++++++++.++++.|.+++  ..+|+++++++|+||.+|++
T Consensus       395 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll  450 (454)
T TIGR01137       395 --------------------KANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL  450 (454)
T ss_pred             --------------------CCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence                                00112346677763  6788999999999999998754  34555689999999999998

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=6.4e-11  Score=89.47  Aligned_cols=102  Identities=26%  Similarity=0.353  Sum_probs=84.8

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++.+++++.+++..|.+.+++.+||++ +++++|+++.++++...                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            467889999999999999999999999998 68999999999986420                                


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                                 ...++.++|.  ..+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~  104 (106)
T cd04638          50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV  104 (106)
T ss_pred             -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence                       0011233343  357889999999999999999999999999988999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.29  E-value=4.6e-11  Score=94.34  Aligned_cols=98  Identities=30%  Similarity=0.301  Sum_probs=78.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcc----------cccccccc------
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----------STLVEKVM------  192 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~----------~~~v~~~m------  192 (346)
                      ++.++.+++++.++++.|.+.+++.+||+| +|+++|++|.+|+++..........          ...+.++|      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~   81 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY   81 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence            578899999999999999999999999999 7999999999999843332221100          01123354      


Q ss_pred             ---ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCC
Q 019128          193 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  227 (346)
Q Consensus       193 ---~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g  227 (346)
                         .++++++++++++.+|++.|.+++++++||+|+.+
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence               46789999999999999999999999999999654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.28  E-value=7.2e-11  Score=89.56  Aligned_cols=106  Identities=24%  Similarity=0.314  Sum_probs=84.1

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      ++.++++++++.+|++.|.+++++.+||+++|+++|+++..++.+.......                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~----------------------------   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA----------------------------   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence            5678999999999999999999999999998999999999998775321000                            


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                               ....++.++|.  .++.++++++++.++++.|.+ .. .+||++ +++++|++|.+|++
T Consensus        54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence                     00123455564  367889999999999999988 33 467777 79999999999996

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.5e-10  Score=87.65  Aligned_cols=108  Identities=27%  Similarity=0.339  Sum_probs=87.2

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.++++.|.+++.+.+||++ +++++|+++..+++.........                          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~--------------------------   55 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD--------------------------   55 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence            567889999999999999999999999999 58999999999997653211000                          


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                 ....+.++|.  .++..+.+++++.++++.|.+.+.+.+||++ +++++|+++.+|++
T Consensus        56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence                       0000233443  3678899999999999999999999999999 69999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.25  E-value=1.6e-10  Score=89.08  Aligned_cols=111  Identities=16%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             CCeeecCCccHHHHHHHHHhCC-cceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|...+ ++.+||+|+|+++|+++..++++......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~----------------------------   53 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY----------------------------   53 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence            5667899999999999998877 89999998899999999999876422100                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCc---EEEEEe-CCEEEEEeeHHHHH
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~---~l~V~d-~~~~~Giit~~dll  173 (346)
                            ........++.++|.+  .+..+++++++.++++.|.+.+..   ..||++ +|+++|++|..|++
T Consensus        54 ------~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~  117 (119)
T cd04598          54 ------GRALYGKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL  117 (119)
T ss_pred             ------hHHHHcCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence                  0011123456777764  688899999999999999988753   345666 89999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.20  E-value=2.6e-10  Score=100.78  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             HHHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHH
Q 019128            6 TRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAA   81 (346)
Q Consensus         6 ~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~   81 (346)
                      +.++..-.++++++|+|+|.  .++..++.+++.++.++.+.+..+.++|++. + ++++|++..+|+++.+.+.-+.  
T Consensus       188 rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~--  265 (423)
T COG4536         188 RDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF--  265 (423)
T ss_pred             HHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc--
Confidence            44566677999999999998  5688999999999999999999999999996 3 6799999999999875432110  


Q ss_pred             hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128           82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E  160 (346)
Q Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~  160 (346)
                                                -.+.+....            .++.++++.+++.+-+..|.+++-+...|+| .
T Consensus       266 --------------------------~k~d~~~~a------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY  307 (423)
T COG4536         266 --------------------------TKEDILRAA------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY  307 (423)
T ss_pred             --------------------------cHhHHHHHh------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence                                      001111111            3689999999999999999999998999999 8


Q ss_pred             CEEEEEeeHHHHHHHHHhcC
Q 019128          161 NKPRGILTSKDILMRVISQN  180 (346)
Q Consensus       161 ~~~~Giit~~dll~~~~~~~  180 (346)
                      |.+.|+||..|+++.....-
T Consensus       308 G~i~GLVTLEDIlEEIVGdf  327 (423)
T COG4536         308 GDIQGLVTLEDILEEIVGDF  327 (423)
T ss_pred             CcEEeeeeHHHHHHHHhccc
Confidence            99999999999997766543

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.20  E-value=5.4e-11  Score=79.19  Aligned_cols=56  Identities=34%  Similarity=0.571  Sum_probs=52.8

Q ss_pred             cccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       188 v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ++++|+++++++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999998754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.18  E-value=4.8e-11  Score=106.11  Aligned_cols=106  Identities=32%  Similarity=0.399  Sum_probs=96.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe----CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI  205 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d----~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l  205 (346)
                      +++.+.|+.++.++++....+++..+||++    ..+++|+||.+|+  .++.+    ....+.++|++.+++.+...++
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l  190 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITL  190 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccH
Confidence            578899999999999999999999999997    5689999999999  34422    2678999999999999999999


Q ss_pred             HHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          206 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       206 ~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .++-+.+.+.+...+||||++|.++-+|++.|+.+.
T Consensus       191 ~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  191 KEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            999999999999999999999999999999999986

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.17  E-value=2.8e-10  Score=89.84  Aligned_cols=114  Identities=15%  Similarity=0.011  Sum_probs=77.6

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      ++.++++++++.+|++.|.+++++++||+| +|+++|++|..|++++..........    ..   .   ..++      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~----~~---~---~~~~------   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ----PE---D---ETKQ------   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc----cc---h---hhcc------
Confidence            578999999999999999999999999999 69999999999998764211000000    00   0   0000      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe
Q 019128          106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV  159 (346)
Q Consensus       106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d  159 (346)
                       .....+.+.+....+.+.|.  .+++++.+++++.+|++.|.+++++++||++
T Consensus        66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence             00000111221111223333  3688999999999999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.17  E-value=2.9e-10  Score=105.93  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=102.8

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccc
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  191 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~  191 (346)
                      ..+++.+|+.  +.++++++.|+.+++..+++.+     ...+.|+| ++++.|+++.++++       ......+++++
T Consensus       131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~i  201 (451)
T COG2239         131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKDL  201 (451)
T ss_pred             hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHHH
Confidence            4568899984  8999999999999999998543     56788999 78899999999997       11126789999


Q ss_pred             cccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          192 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       192 m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      |.+.++++++++..+++.+.|.+++.-.+||||++++++|+||..|++..+
T Consensus       202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998763

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.13  E-value=1.3e-10  Score=77.37  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=51.2

Q ss_pred             ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHH
Q 019128           20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA   73 (346)
Q Consensus        20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~   73 (346)
                      |+++|+++++++++++++.+|++.|.+++++++||+| +|+++|++|.+|+++++
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789999999999999999999999999999999998 89999999999998864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.12  E-value=5.8e-10  Score=103.93  Aligned_cols=123  Identities=21%  Similarity=0.289  Sum_probs=105.1

Q ss_pred             HHHHhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHh-----CCcceeeeee-CCeEEEEEehHHHHHHHHHHHHH
Q 019128            6 TRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMER   79 (346)
Q Consensus         6 ~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~-----~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~   79 (346)
                      |..+....++.+-+++.+|+.++++++++.|+.+|+..+++     ..+..++|+| +++++|+++.++++.+       
T Consensus       120 r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a-------  192 (451)
T COG2239         120 RARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA-------  192 (451)
T ss_pred             HHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC-------
Confidence            44456667888999999999999999999999999999985     3478899999 7899999999998753       


Q ss_pred             HHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe
Q 019128           80 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV  159 (346)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d  159 (346)
                                                 +..+.         ++++|.+  .++++.++++.+++.+.+.+++.-.+||+|
T Consensus       193 ---------------------------~~~~~---------i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd  234 (451)
T COG2239         193 ---------------------------EPDEL---------LKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVD  234 (451)
T ss_pred             ---------------------------CcHhH---------HHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceEC
Confidence                                       11222         4555553  589999999999999999999999999999


Q ss_pred             -CCEEEEEeeHHHHH
Q 019128          160 -ENKPRGILTSKDIL  173 (346)
Q Consensus       160 -~~~~~Giit~~dll  173 (346)
                       +++++|++|..|++
T Consensus       235 ~~~~LiG~itiDDii  249 (451)
T COG2239         235 EDNRLIGIITIDDII  249 (451)
T ss_pred             CCCceeeeeeHHHHH
Confidence             88999999999998

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.02  E-value=1.8e-08  Score=92.66  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128          131 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  209 (346)
Q Consensus       131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~  209 (346)
                      .....++.+..++++.|...+...+.|++ ++++.|.++.+++. .+...     ...+.+.+.....++++++++.+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  325 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKK-----AQGLQDVLIDDIYTVDAGTLLRETV  325 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhc-----CCchhhhhccCCceECCCCcHHHHH
Confidence            34566777899999999999999999998 88999999999986 55433     2356777778888999999999999


Q ss_pred             HHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      ..|.+++.. +||+|++|+++|+||..++++++.+
T Consensus       326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            999999998 9999999999999999999987543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.94  E-value=5.7e-08  Score=90.42  Aligned_cols=103  Identities=18%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHh
Q 019128          134 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM  212 (346)
Q Consensus       134 v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m  212 (346)
                      ..++.+..+++..|...+.+.++|+| ++++.|+++..++. +....     ...+.+.+.....++++++++.+++..|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPLAVDAQTPLSELLSHV  363 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCceeCCCCCHHHHHHHH
Confidence            44667889999999999999999999 89999999999996 44432     2356677777889999999999999999


Q ss_pred             HhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          213 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       213 ~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      .+.... +||||++|+++|+||..++++++.
T Consensus       364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             HhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            998776 999999999999999999998753

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.87  E-value=8.1e-09  Score=85.68  Aligned_cols=131  Identities=15%  Similarity=0.189  Sum_probs=106.2

Q ss_pred             HHHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHH
Q 019128            6 TRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAA   81 (346)
Q Consensus         6 ~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~   81 (346)
                      +.++.....+.+++|+|+|.  .+.++++.+.++.+.+..+.+..++++||+.  .+.+.|++..+||++++...-    
T Consensus        55 ~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~----  130 (293)
T COG4535          55 LDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA----  130 (293)
T ss_pred             HHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc----
Confidence            34556666788999999998  4678999999999999999999999999996  477999999999998632110    


Q ss_pred             hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128           82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E  160 (346)
Q Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~  160 (346)
                                                         ..-.+.++..   +.+.++++..+...++.+...+.+..+|+| -
T Consensus       131 -----------------------------------~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEf  172 (293)
T COG4535         131 -----------------------------------EPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF  172 (293)
T ss_pred             -----------------------------------ccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEecc
Confidence                                               0011333333   588899999999999999999999999999 8


Q ss_pred             CEEEEEeeHHHHHHHHHh
Q 019128          161 NKPRGILTSKDILMRVIS  178 (346)
Q Consensus       161 ~~~~Giit~~dll~~~~~  178 (346)
                      |.+.|+||..|++.....
T Consensus       173 GgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         173 GGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             CCeeeeEEHHHHHHHHhc
Confidence            899999999999955554

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.72  E-value=2.5e-08  Score=93.54  Aligned_cols=125  Identities=13%  Similarity=0.203  Sum_probs=103.9

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---C---CEEEEEeeHHHHHHHHHhcCCCc-----
Q 019128          115 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA-----  183 (346)
Q Consensus       115 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~---~~~~Giit~~dll~~~~~~~~~~-----  183 (346)
                      .|.+..++++|.+  ++++++..+.+....+.+....++.+||+|   .   +++.|+|-++.++ .++.++...     
T Consensus       578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRS  654 (762)
T ss_pred             HhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcc
Confidence            3455678899985  899999999999999999999999999998   2   4788999888876 333221000     


Q ss_pred             ---------------------------------cccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEE
Q 019128          184 ---------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV  230 (346)
Q Consensus       184 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~  230 (346)
                                                       .-.++..+|++.|+++++++++..++..|++-+.|++.||+...+++
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~  734 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV  734 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence                                             01355678889999999999999999999999999999999999999


Q ss_pred             EEEehHHHHHHH
Q 019128          231 DVVDVIHITHAA  242 (346)
Q Consensus       231 Giit~~Di~~~~  242 (346)
                      |++|++|+..+-
T Consensus       735 gilTR~D~~~~~  746 (762)
T KOG0474|consen  735 GILTRKDLARYR  746 (762)
T ss_pred             EEEehhhhhhHH
Confidence            999999999764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=3.4e-07  Score=85.31  Aligned_cols=130  Identities=10%  Similarity=0.038  Sum_probs=96.2

Q ss_pred             chhHHHHhhcCCCCcccccccccCCCe---eecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHH
Q 019128            3 DIATRVIARELNLEETPVSKVMTRNPT---FVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME   78 (346)
Q Consensus         3 d~~~~~~~~~~~~~~~~v~dim~~~~i---~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~   78 (346)
                      ++++.++.......-.++.++|.+.+.   ...++.+..+|+..|..++.+.++|+| +++++|+++..++....-    
T Consensus       259 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  334 (400)
T PRK10070        259 DYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT----  334 (400)
T ss_pred             HHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh----
Confidence            345555544333334678888864332   334677899999999999999999999 799999999999865310    


Q ss_pred             HHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE
Q 019128           79 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT  158 (346)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~  158 (346)
                                                            ....+.+.+.  ....++.+++++.+++..+.+.... +||+
T Consensus       335 --------------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  373 (400)
T PRK10070        335 --------------------------------------QQQGLDAALI--DAPLAVDAQTPLSELLSHVGQAPCA-VPVV  373 (400)
T ss_pred             --------------------------------------cCCchhhhhc--cCCceeCCCCCHHHHHHHHHhCCCc-EEEE
Confidence                                                  0011233332  2577899999999999999997766 9999


Q ss_pred             e-CCEEEEEeeHHHHHHHHH
Q 019128          159 V-ENKPRGILTSKDILMRVI  177 (346)
Q Consensus       159 d-~~~~~Giit~~dll~~~~  177 (346)
                      | +|+++|+||..+++..+.
T Consensus       374 ~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        374 DEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCCCcEEEEEEHHHHHHHHH
Confidence            9 899999999999984443

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.68  E-value=4.2e-08  Score=92.06  Aligned_cols=157  Identities=16%  Similarity=0.140  Sum_probs=107.1

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC------CeEEEEEehHHHHHHHHHHHHHHHhhhh-hH
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGK-AI   87 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~------~~~vGivt~~dll~~~~~~~~~~~~~~~-~~   87 (346)
                      .++++++|+|++++++++.-+.+....+.+..++++.+||+|+      +++.|++-.+.++..+..+......... ..
T Consensus       579 mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~  658 (762)
T KOG0474|consen  579 MRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL  658 (762)
T ss_pred             hhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence            4678999999999999999999999999999999999999982      4789999988887755443222111000 00


Q ss_pred             hhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEE
Q 019128           88 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  166 (346)
Q Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Gi  166 (346)
                      .....---..+....++..+..-.-.+.-...++..+|.|  .+.++++++++..+..+++.-+.+.+.|+. ..+++|+
T Consensus       659 ~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi  736 (762)
T KOG0474|consen  659 PVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI  736 (762)
T ss_pred             chhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence            0000000000000111111111011111223456778875  789999999999999999999999999998 6778999


Q ss_pred             eeHHHHH
Q 019128          167 LTSKDIL  173 (346)
Q Consensus       167 it~~dll  173 (346)
                      +|++|+.
T Consensus       737 lTR~D~~  743 (762)
T KOG0474|consen  737 LTRKDLA  743 (762)
T ss_pred             Eehhhhh
Confidence            9999997

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.57  E-value=1.3e-06  Score=80.43  Aligned_cols=108  Identities=17%  Similarity=0.243  Sum_probs=85.1

Q ss_pred             cCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128           25 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  103 (346)
Q Consensus        25 ~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  103 (346)
                      ........++.+..+++..|..++...+.|+| ++++.|.++..++..+.-                             
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------------  299 (363)
T TIGR01186       249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-----------------------------  299 (363)
T ss_pred             cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh-----------------------------
Confidence            33444566778899999999999999999998 799999999888754310                             


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHh
Q 019128          104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  178 (346)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~  178 (346)
                                   ....+.+.+.  ..+.++++++++.+++..|.+++.. +||+| +|+++|+||..+++ ..+.
T Consensus       300 -------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~-~~~~  358 (363)
T TIGR01186       300 -------------KAQGLQDVLI--DDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLV-DALY  358 (363)
T ss_pred             -------------cCCchhhhhc--cCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHH-HHHH
Confidence                         0012333333  3567899999999999999999998 99999 89999999999998 4443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.52  E-value=2.6e-07  Score=82.74  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCC
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  101 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  101 (346)
                      .+|+.+.|+.++.++++....+++..+||.++    +|++|+||.+|+-..                             
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----------------------------  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----------------------------  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence            47889999999999999999999999999973    689999999997321                             


Q ss_pred             CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          102 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                 .  -....+.++|++  ..++.+...++.++-+++.+.+-..+||++ +|+++.++++.|+.
T Consensus       167 -----------~--~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~  224 (503)
T KOG2550|consen  167 -----------E--DNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM  224 (503)
T ss_pred             -----------h--cccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence                       0  112347888886  448889999999999999999999999999 99999999999997

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.48  E-value=2.6e-07  Score=70.69  Aligned_cols=53  Identities=26%  Similarity=0.412  Sum_probs=50.2

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHH
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL   70 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll   70 (346)
                      .+++++|.+++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..++.
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            689999999999999999999999999999999999998 78999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.46  E-value=2.4e-07  Score=90.57  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=92.6

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc---------------
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ---------------  179 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~---------------  179 (346)
                      ....+++++|.. ++++++++++++.++.+.|.+++++.+||+| +|+++|++|.+|++ .....               
T Consensus       243 ~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~-~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        243 NQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL-SPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             hcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh-ccccCceEEEcCcccccccc
Confidence            345678999972 3789999999999999999999999999999 89999999999998 32221               


Q ss_pred             CCCc-------cccccccccccCCeee---cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          180 NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       180 ~~~~-------~~~~v~~~m~~~~~~v---~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      +...       ..-++.++|+..++.+   +...+..-+.+.|.+.++...|++. ..-+.||+|-++.++.
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS  391 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence            0000       0113556676666544   4466777888899999998888876 3468888887777753

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.35  E-value=8.6e-07  Score=67.75  Aligned_cols=55  Identities=29%  Similarity=0.579  Sum_probs=51.5

Q ss_pred             cccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       186 ~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5688999899999999999999999999999999999999999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.27  E-value=8.8e-06  Score=71.40  Aligned_cols=163  Identities=17%  Similarity=0.270  Sum_probs=113.7

Q ss_pred             CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128           26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  105 (346)
Q Consensus        26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (346)
                      +.+++++.+  +.||+++     =+++.+..+|+++-+=|..+|+..                               +.
T Consensus       216 KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~-------------------------------PA  257 (386)
T COG4175         216 KTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLN-------------------------------PA  257 (386)
T ss_pred             CeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcC-------------------------------cc
Confidence            456666655  6677776     456788888999999999998763                               11


Q ss_pred             hhHHHHHHHHh---CCCCccccccCCCcee-EeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC
Q 019128          106 NTFIETLRERM---FRPSLSTIIPEKSKVV-TISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN  180 (346)
Q Consensus       106 ~~~~~~~~~~~---~~~~v~~im~~~~~~~-~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~  180 (346)
                      +++...+-+..   .-.+..++|.+ .+.. .-.+...-..++..+.....+.+.+++ .++.+|+++..+.. ..    
T Consensus       258 ndYV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~----  331 (386)
T COG4175         258 NDYVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLV-KA----  331 (386)
T ss_pred             HHHHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchh-cc----
Confidence            22222222211   12346788874 2222 222233445677778877776666777 67799999998886 21    


Q ss_pred             CCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       181 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                                .+..++.+++.++++.+.+....+... .++|+|++|+++|+|+...+++++.
T Consensus       332 ----------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 ----------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ----------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence                      344678889999999999999988776 4889999999999999999998754

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.06  E-value=1.6e-05  Score=49.72  Aligned_cols=47  Identities=30%  Similarity=0.478  Sum_probs=42.7

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      ++.++++++++.++++.|.+.+.+.+||+++++++.|+++..++.+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            35678999999999999999999999999988999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.02  E-value=6.8e-05  Score=71.16  Aligned_cols=111  Identities=11%  Similarity=0.195  Sum_probs=89.0

Q ss_pred             ceeEeCCC-CcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcC-C---------------------Cc
Q 019128          130 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-L---------------------PA  183 (346)
Q Consensus       130 ~~~~v~~~-~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~-~---------------------~~  183 (346)
                      ....++.+ .++.+...+|.+..++.+||+-   ..+++|++.++|+...+.... .                     .+
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP  636 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence            35556555 8999999999999999999874   678999999999874443211 0                     01


Q ss_pred             cccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       184 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .....+++|...|.++...++..-+++++++-+.+...|. ++|++.|+||.+|+++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence            1234667888899999999999999999999999988765 58999999999999875

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.02  E-value=3.2e-05  Score=73.30  Aligned_cols=129  Identities=17%  Similarity=0.160  Sum_probs=90.6

Q ss_pred             CeeecCC-ccHHHHHHHHHhCCcceeeee-e--CCeEEEEEehHHHHHHHHHHHHHHH-hhhhhHhhhhhhhhhccCCCC
Q 019128           28 PTFVLSD-TLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAA-EKGKAIAAAVEGVEKHWGTSI  102 (346)
Q Consensus        28 ~i~v~~~-~~l~ea~~~m~~~~~~~lpVv-d--~~~~vGivt~~dll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  102 (346)
                      ...++.+ +++.|...+|.+..++.+||+ +  .++++|+++.+++...+......+. .....+    .      .   
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~----~------f---  624 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI----Y------F---  624 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc----c------c---
Confidence            5555554 899999999999999999999 3  4789999999999876543221110 000000    0      0   


Q ss_pred             CChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128          103 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                      ..+.  .......-.....+++|..  .++++...++.+-+++++.+-+.+.+.|..+|++.|+||.+|++
T Consensus       625 ~~~~--~~~~~~~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l  691 (696)
T KOG0475|consen  625 NDPS--PSAVAGIPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL  691 (696)
T ss_pred             CCCC--ccccCCCCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence            0000  0000111122346777765  78899999999999999999999999999999999999999998

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.89  E-value=4.2e-05  Score=47.80  Aligned_cols=45  Identities=27%  Similarity=0.388  Sum_probs=40.8

Q ss_pred             CeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHH
Q 019128           28 PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD   72 (346)
Q Consensus        28 ~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~   72 (346)
                      +.++++++++.++++.|.+++++.+||++ +++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            56789999999999999999999999998 5899999999998654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.68  E-value=0.00061  Score=63.27  Aligned_cols=106  Identities=17%  Similarity=0.127  Sum_probs=73.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  199 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v  199 (346)
                      ++.++|.+  .......+.+  .+++.   ++.+++.|++.    |+++..+.. .+.....   ...+.+ +.....++
T Consensus       275 ~a~~~m~~--~~~~~~~~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~  338 (382)
T TIGR03415       275 TARSLMRP--LTDLEHVDGG--WCVSD---RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVI  338 (382)
T ss_pred             eHHHHhcc--cccccccCcc--hhhhh---cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCccc
Confidence            56778854  2222222222  44433   67888888876    788877764 4333111   224555 55678899


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ++++++.+++..+.+.+.. ++|+|+ |+++|+|+..++++++.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       339 NPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             CCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence            9999999999998887765 888886 99999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.001  Score=64.70  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=54.8

Q ss_pred             CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC---CeEEEEEehHHHHHHHHH
Q 019128           13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIA   75 (346)
Q Consensus        13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~~~vGivt~~dll~~~~~   75 (346)
                      .....+.|+++|.+++..+..++|..|..+.+..+.++.+|++|+   .-++|-|..+.+...+-.
T Consensus       583 ~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  583 SSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             cceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            355678999999999999999999999999998887999999983   468999999998876544

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.35  E-value=0.0005  Score=60.65  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             cchhHHHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHH
Q 019128            2 KDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME   78 (346)
Q Consensus         2 ~d~~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~   78 (346)
                      .||++.+++.-....-+++.++|..  ..+.-.+...-..+++.+.......+.+++ +++.+|+++..+....      
T Consensus       258 ndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------  331 (386)
T COG4175         258 NDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------  331 (386)
T ss_pred             HHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------
Confidence            4899999998888888999999983  222333344556789999998888888888 7889999998776432      


Q ss_pred             HHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE
Q 019128           79 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT  158 (346)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~  158 (346)
                                                                   .+  ...+.++++++++.+.+..+.+.+. .++|+
T Consensus       332 ---------------------------------------------~~--~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVv  363 (386)
T COG4175         332 ---------------------------------------------AL--IDDVLTVDADTPLSEILARIRQAPC-PVAVV  363 (386)
T ss_pred             ---------------------------------------------cc--cccccccCccchHHHHHHHHhcCCC-ceeEE
Confidence                                                         11  1357789999999999988887765 56777


Q ss_pred             e-CCEEEEEeeHHHHHHHHHh
Q 019128          159 V-ENKPRGILTSKDILMRVIS  178 (346)
Q Consensus       159 d-~~~~~Giit~~dll~~~~~  178 (346)
                      | +++++|+++...++ .++.
T Consensus       364 de~~r~vG~i~~~~vl-~aL~  383 (386)
T COG4175         364 DEDGRYVGIISRGELL-EALA  383 (386)
T ss_pred             cCCCcEEEEecHHHHH-HHHh
Confidence            7 99999999999998 5443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.32  E-value=0.0011  Score=61.49  Aligned_cols=120  Identities=9%  Similarity=0.039  Sum_probs=80.6

Q ss_pred             chhHHHHhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHh
Q 019128            3 DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE   82 (346)
Q Consensus         3 d~~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~   82 (346)
                      ++++.++......+-+++.++|.+.......+.+  .|++.   ++...+.|+|+    |+++..+...... .      
T Consensus       259 ~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~-~------  322 (382)
T TIGR03415       259 DYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK----QVRRRDAKLPVQA-W------  322 (382)
T ss_pred             HHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc----ceecccchHhHhh-c------
Confidence            4667777666667778999999543333333333  44444   78889999987    7887666432110 0      


Q ss_pred             hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCE
Q 019128           83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENK  162 (346)
Q Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~  162 (346)
                                                       ....++.+ +.  ....++++++++.+++..+.+.+.. ++|+++|+
T Consensus       323 ---------------------------------~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  365 (382)
T TIGR03415       323 ---------------------------------AAEQEVES-LE--AAPTVINPDTLMRDVLAARHRTGGA-ILLVENGR  365 (382)
T ss_pred             ---------------------------------ccccchhh-hc--ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeCCe
Confidence                                             00011222 11  3577899999999999999887765 77888899


Q ss_pred             EEEEeeHHHHHHH
Q 019128          163 PRGILTSKDILMR  175 (346)
Q Consensus       163 ~~Giit~~dll~~  175 (346)
                      ++|+|+..+++..
T Consensus       366 ~~g~~~~~~~~~~  378 (382)
T TIGR03415       366 IVGVIGDDNIYHA  378 (382)
T ss_pred             EEEEEeHHHHHHH
Confidence            9999999999833

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=97.00  E-value=0.0011  Score=63.47  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=98.9

Q ss_pred             CCCccccccCCCceeEeCCCCcHH-HHHHHHHHcCCcEEEEEe--C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV--E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~V~d--~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      ...++++|+|...+..++.+..+. +......+++++++||.+  . ..+.|.+....+  ++..........++...+.
T Consensus       203 ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~~~  280 (498)
T KOG2118|consen  203 EKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSESAL  280 (498)
T ss_pred             HHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhhhc
Confidence            345889999988888888888876 556666789999999998  2 334444444444  4443222334678888888


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCC
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG  251 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~  251 (346)
                      .....+++++++.+.++.+...+.|.+.|.. ...-+|+++..|+ +....++.++.+
T Consensus       281 ~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~d  336 (498)
T KOG2118|consen  281 LRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEED  336 (498)
T ss_pred             cccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceeccccc
Confidence            9999999999999999999999988887777 6678999999999 776666665544

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=96.68  E-value=0.00054  Score=48.76  Aligned_cols=54  Identities=11%  Similarity=0.175  Sum_probs=38.5

Q ss_pred             HHhhcCCCCCCccccccccccccccCCCCCcc--cccCCCCCCCCCCceeEEEecCCCC-eEEEe
Q 019128          266 DSAMALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPSPSPGVPSAFAFKVQDNKGL-MHRFT  327 (346)
Q Consensus       266 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~~  327 (346)
                      ++.+.+..++++++|++|++...++++|..|+  .+.++.+.        |+|.+++++ +.+++
T Consensus        20 ~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~--------~~V~~~~~~rI~~V~   76 (81)
T PF03471_consen   20 NELLGLDLPEEDYDTLGGLILEQLGRIPEVGERVEIELENYE--------FEVLEMDGRRIRKVR   76 (81)
T ss_dssp             HHHHTS-TTTTTTSBHHHHHHHHHTSS--TTSEEEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             HHHHCcCCCccchhhHHHHHHHHcCCCCCCCeEEEEEcCCEE--------EEEEEeeCCEEEEEE
Confidence            34445556667799999999999999999999  45555888        999999654 44433

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.63  E-value=0.022  Score=49.09  Aligned_cols=104  Identities=19%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH--------HHHHhcCCC----ccccccccccccCC--
Q 019128          131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLP----ADSTLVEKVMTPNP--  196 (346)
Q Consensus       131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll--------~~~~~~~~~----~~~~~v~~~m~~~~--  196 (346)
                      ++.+..  .+.+|+++     .+++.|.++|+++-+=++.+++        ..++..+..    .....+.+.|.+..  
T Consensus       189 ivfVTH--DidEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~  261 (309)
T COG1125         189 IVFVTH--DIDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPA  261 (309)
T ss_pred             EEEEec--CHHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccc
Confidence            444443  35676655     3578888899999999977776        233333211    11223444443222  


Q ss_pred             --eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          197 --ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       197 --~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                        -..+......+++..+...+...+||+|++|+++|.||..+++..
T Consensus       262 ~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         262 DGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence              233445566678888999999999999999999999999999863

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.43  E-value=0.16  Score=43.97  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  106 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  106 (346)
                      .++.|..+  +.||+++     -+++.|.++|+++-+=++.++++.-...+-.                ..+|.+.... 
T Consensus       188 TivfVTHD--idEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~----------------~f~g~~~~~~-  243 (309)
T COG1125         188 TIVFVTHD--IDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVE----------------DFFGESERGL-  243 (309)
T ss_pred             EEEEEecC--HHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHH----------------HHhccccccc-
Confidence            34444444  5566665     4567888889999999998887642211111                1111110000 


Q ss_pred             hHHHHHHHHhCCCCccccccCCC--ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          107 TFIETLRERMFRPSLSTIIPEKS--KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       107 ~~~~~~~~~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                             ..+...++.+.|.+..  .--.+.......+++..+...+...+||+| +|+++|.+|..+++
T Consensus       244 -------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~  306 (309)
T COG1125         244 -------RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLL  306 (309)
T ss_pred             -------cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHh
Confidence                   0001112222222210  011122334445677778888999999999 99999999999987

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.23  E-value=0.025  Score=40.28  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=27.8

Q ss_pred             eEEEecCCCCeEEEecC-CCChHHHHHhhccc
Q 019128          313 AFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE  343 (346)
Q Consensus       313 ~~~V~d~~g~~~~~~~g-~~s~~~~~~~~~~~  343 (346)
                      +||..+..|++|||+++ .-|+.+|++.|...
T Consensus         2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R   33 (86)
T cd06409           2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQR   33 (86)
T ss_pred             cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence            59999999999999998 99999999988653

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.40  E-value=0.56  Score=46.43  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=57.5

Q ss_pred             ccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCC--cEEEEEehHHHHHHHHHHccCCC
Q 019128          185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG--DVVDVVDVIHITHAAVATVGNTA  250 (346)
Q Consensus       185 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g--~~~Giit~~Di~~~~~~~i~~~~  250 (346)
                      ...++++|.+++.++..+++..|+.+.+.....+.+|+||+..  .++|.|.++.+...+-..+.++.
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~  654 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP  654 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence            3578999999999999999999999999888899999999644  78999999999988877776544

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=86.51  E-value=0.53  Score=45.47  Aligned_cols=129  Identities=20%  Similarity=0.162  Sum_probs=86.2

Q ss_pred             HhhcCCCCccccccccc--CCCeeecCCccHH-HHHHHHHhCCcceeeeeeC--CeEEEEEehHHHHHHHHHHHHHHHhh
Q 019128            9 IARELNLEETPVSKVMT--RNPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK   83 (346)
Q Consensus         9 ~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~-ea~~~m~~~~~~~lpVvd~--~~~vGivt~~dll~~~~~~~~~~~~~   83 (346)
                      +.....+.+..++++|+  .++..++.+..+. +......+++++++||.+.  ...+|.+-...++....         
T Consensus       195 i~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~---------  265 (498)
T KOG2118|consen  195 ITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQ---------  265 (498)
T ss_pred             hhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhc---------
Confidence            44556788999999998  4667777788777 5666667999999999983  22333322122222100         


Q ss_pred             hhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEE
Q 019128           84 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP  163 (346)
Q Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~  163 (346)
                                                  ....+...++...+.  ..+..+++++++.+.++.+.+.+.+.+.|.....-
T Consensus       266 ----------------------------~~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~  315 (498)
T KOG2118|consen  266 ----------------------------VEVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVD  315 (498)
T ss_pred             ----------------------------cccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCcc
Confidence                                        000122233444444  36778899999999999999988888887776667


Q ss_pred             EEEeeHHHHHHHHH
Q 019128          164 RGILTSKDILMRVI  177 (346)
Q Consensus       164 ~Giit~~dll~~~~  177 (346)
                      +++++..|+ ....
T Consensus       316 ~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  316 IFVLTLEDL-EEVV  328 (498)
T ss_pred             eeeEeccch-hhhc
Confidence            789999987 4444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		2e-04
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		3e-04

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 15  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAI 74
           +++T V ++MTR   +V  +    + +  + + + RHLPV+++G+VI LL I   + DAI
Sbjct: 71  VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAI 130
Query: 75  ARME 78
           ++ +
Sbjct: 131 SQHQ 134

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +D A +V+ +E + + T V ++MT    +V       E +  M + + RHLPV++ G++I
Sbjct: 62  RDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLI 121
Query: 62  ALLDIAKCLYDAIA 75
            L+ I   +   IA
Sbjct: 122 GLISIGDLVKSVIA 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	6e-29
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	5e-25
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-05
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	9e-29
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	6e-21
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-27
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	7e-10
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-27
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-21
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	8e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	9e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-27
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-24
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	7e-26
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	7e-12
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-11
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-05
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-25
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-12
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-06
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-25
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-24
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-14
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-04
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-25
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-15
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-10
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-06
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-23
1pbj_A	125	Hypothetical protein; structural genomics, domain,	6e-13
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-11
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-22
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-07
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	6e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-21
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-04
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-21
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-09
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	7e-21
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	6e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-04
3fio_A	70	A cystathionine beta-synthase domain protein fused	1e-20
3fio_A	70	A cystathionine beta-synthase domain protein fused	9e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-05
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	4e-20
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	7e-10
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-07
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-06
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	7e-20
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	6e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-18
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-15
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-18
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-09
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-08
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-17
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-07
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-17
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	5e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-08
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-07
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-17
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-10
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-06
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	7e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	9e-11
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-17
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-16
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-13
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-09
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-16
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	5e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	6e-16
1vr9_A	213	CBS domain protein/ACT domain protein; structural	6e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-07
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-15
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-15
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	9e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	8e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-04
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-12
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-06
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	4e-11
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	2e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	5e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	3e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	8e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	3e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	6e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-07
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	7e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	7e-07
2oux_A	286	Magnesium transporter; 10001B, structural genomics	9e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	1e-06
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	2e-06
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	2e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	6e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-04
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  108 bits (272), Expect = 6e-29
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 103 SGPNTFIETLRERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVV 157
           S  +    + RE ++   ++T + +        VVT+ P  ++  A   +   ++ + VV
Sbjct: 4   SHHHHHHSSGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVV 63

Query: 158 T-VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK 216
           T  +    GI T +D++  V  Q   +    V   MT N      ++     + IM  G+
Sbjct: 64  TDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR 123

Query: 217 FLHLPVVDRDGDVVDVVDVIHITHAAVA 244
           F H+PV + +G +  ++ +  +  A + 
Sbjct: 124 FRHVPVEE-NGRLAGIISIGDVVKARIG 150

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 98.2 bits (245), Expect = 5e-25
 Identities = 25/89 (28%), Positives = 42/89 (47%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +D+   V  +     +  VS  MT+N      ++   + ++ M  G+FRH+PV ENG + 
Sbjct: 77  RDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLA 136

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAA 90
            ++ I   +   I  +E  AE  KA  A 
Sbjct: 137 GIISIGDVVKARIGEIEAEAEHIKAYIAG 165

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 45/172 (26%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL---DIAKCLYDAIA 75
           +     R+   V  D    EA   +   K   + V + +G V+ +    D+ K +     
Sbjct: 29  LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAV----- 83

Query: 76  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 135
               A +   ++  +V                        M              VV   
Sbjct: 84  ----AGQGAASLQQSVSVA---------------------M-----------TKNVVRCQ 107

Query: 136 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
              T     + M   R     V    +  GI++  D++   I +       +
Sbjct: 108 HNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHI 159

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  107 bits (269), Expect = 9e-29
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
           VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V++
Sbjct: 19  VVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKE 78

Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 244
           +MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 79  IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 86.5 bits (215), Expect = 6e-21
 Identities = 21/77 (27%), Positives = 45/77 (58%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +D + +    +  +++T V ++MTR   +V  +    + +  + + + RHLPV+++G+VI
Sbjct: 58  RDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVI 117

Query: 62  ALLDIAKCLYDAIARME 78
            LL I   + DAI++ +
Sbjct: 118 GLLSIGDLVKDAISQHQ 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 47/169 (27%)

Query: 18  TPVSKVMTRNPTFVLS---DTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 71
             V  ++      V++   D     A+QKM       L V+++ +++ +L   D ++   
Sbjct: 6   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR--- 62

Query: 72  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 131
                  ++    K +                        ++E M R            V
Sbjct: 63  -------KSYLLDKPVKDT--------------------QVKEIMTRQ-----------V 84

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 180
             +   +T       + E+R+    V  + K  G+L+  D++   ISQ+
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQH 133

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  104 bits (262), Expect = 1e-27
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP 163
           GP +   T+ + +     S        + T++  D V  A K M E  + + +V   +  
Sbjct: 1   GPGSMSTTVAQILKAKPDSG-----RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDI 55

Query: 164 RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 223
            GI+T +D   +V+ Q   + +T VE++MT             + + +M + +  HLPV+
Sbjct: 56  AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL 115

Query: 224 DRDGDVVDVVDVIHITHAAVA 244
           D  G ++ ++ +  +  + +A
Sbjct: 116 D-GGKLIGLISIGDLVKSVIA 135

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 22/85 (25%), Positives = 43/85 (50%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +D A +V+ +E + + T V ++MT    +V       E +  M + + RHLPV++ G++I
Sbjct: 62  RDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLI 121

Query: 62  ALLDIAKCLYDAIARMERAAEKGKA 86
            L+ I   +   IA  +    + + 
Sbjct: 122 GLISIGDLVKSVIADQQFTISQLEH 146

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 76
                 R    V  +    +A++ M +     L VV+  ++  ++   D A+        
Sbjct: 15  AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYAR-------- 66

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 136
             +   + ++  A                      + E M              V  + P
Sbjct: 67  --KVVLQERSSKAT--------------------RVEEIMTAK-----------VRYVEP 93

Query: 137 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 196
           + +       M E R+    V    K  G+++  D++ + +  +     + +E  +   P
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLV-KSVIADQQFTISQLEHYIHGTP 152

Query: 197 ECATI 201
              ++
Sbjct: 153 SVTSV 157

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  103 bits (259), Expect = 3e-27
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 187
            K++ + P+ +V  A++ M+E  + S VV  ++    G  T  DI+ RVI   LP D   
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IP 73

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 247
           VE++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+   + 
Sbjct: 74  VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE 132

Query: 248 NTAGS 252
               +
Sbjct: 133 TAISA 137

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
            DI  RVI   L  +  PV ++MTRN      +T   E L+KM + + +H+ + E G+++
Sbjct: 57  SDIIRRVIVPGLPYD-IPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIV 115

Query: 62  ALLDIAKCLYDAIARMERAAE 82
            +  ++  L  +  R+E A  
Sbjct: 116 GIFTLSDLLEASRRRLETAIS 136

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 47/173 (27%)

Query: 11  RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DI 66
           R ++++  P+   MT+    V   T   EA + M++     L V+ ++G V+      DI
Sbjct: 1   RVMDMK-APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 59

Query: 67  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 126
            +          R    G      VE +                     M R        
Sbjct: 60  IR----------RVIVPGLPYDIPVERI---------------------MTRN------- 81

Query: 127 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 179
               ++T +    +    +KM E R+   ++  E K  GI T  D+L     +
Sbjct: 82  ----LITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 130

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
              ++  MT         T + +A  +M +     L V++ DG+VV
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVV 51

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  107 bits (268), Expect = 5e-27
 Identities = 42/265 (15%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEV- 60
             I        L  +   +  +M +NP  +  +     A +K+ +G    + V       
Sbjct: 4   DKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEG 63

Query: 61  -IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRP 119
            +   D+   +           +        +                        M   
Sbjct: 64  LLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDY---------------------MTPN 102

Query: 120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVIS 178
                       VT+  T     A   M+     S  VV + +KP GI+T ++ L+    
Sbjct: 103 -----------PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 179 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DV 235
            +   +   V+  M+   +    +  +  A+ +M    F  LPV+D D  VV +V   + 
Sbjct: 152 LD---EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208

Query: 236 IHITHAAVATVGNTAGSNNEAASTM 260
           I     AV  +             M
Sbjct: 209 IKQLAKAVDKLDPDYFYGKVVKDVM 233

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  100 bits (250), Expect = 2e-24
 Identities = 42/245 (17%), Positives = 76/245 (31%), Gaps = 54/245 (22%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL- 64
                  ++  TP+   MT NP  V + +    A+  MV   F  LPVV  N + + ++ 
Sbjct: 82  CSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVT 141

Query: 65  --DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLS 122
             +      D                                       ++  M      
Sbjct: 142 EREFLLLYKDLDEIF---------------------------------PVKVFM------ 162

Query: 123 TIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNL 181
                 +KV TI     +  A K ML        V+  +NK  GI+T  + + ++     
Sbjct: 163 -----STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD 217

Query: 182 PAD-----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 236
             D       +V+ VM  N         +  A   M   +   L ++++D  +  ++   
Sbjct: 218 KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITER 277

Query: 237 HITHA 241
            +  A
Sbjct: 278 DLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 167 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 226
           + S  I      +NL      +E +M  NP   + +  +  A   +++G    + V   +
Sbjct: 1   MGSDKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--N 58

Query: 227 GDVV------DVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEED 279
             +       D++  +        + G+    +       M     + + +    DE  
Sbjct: 59  EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP---NPVTVYNTSDEFT 114

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
           ++V++++    +    K M E  + S +V   NKP GI+T +DI+ + I +    + T  
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSLE-TKA 69

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           E+ MT +      D+PI  AL +M      HLPVVD  G++  ++
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII 114

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 47/170 (27%)

Query: 15  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 71
           +EE  V + M      V  D    +  + M +     + VV+  + + ++   DI     
Sbjct: 1   MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV---- 56

Query: 72  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 131
                  +A  KGK++    E                       M              +
Sbjct: 57  -------KAIGKGKSLETKAEEF---------------------MTAS-----------L 77

Query: 132 VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 180
           +TI     +  A   M +  +    VV  +   +GI++ +DI   +    
Sbjct: 78  ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF 127

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEV 60
           +DI  + I +  +LE T   + MT +   +  D+    AL  M Q   RHLPVV + G +
Sbjct: 53  RDIV-KAIGKGKSLE-TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNL 110

Query: 61  IALL---DIAKCLYDAIARME 78
             ++   DI + + D    M 
Sbjct: 111 KGIISIRDITRAIDDMFETMG 131

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 237
           +  +V++ M       T D  + D   +M +     + VVD     V      D+V  I 
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIG 60

Query: 238 ITHAAVATVGN-------TAGSN---NEAASTMMQK 263
              +              T   +     A + M Q 
Sbjct: 61  KGKSLETKAEEFMTASLITIREDSPITGALALMRQF 96

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  100 bits (251), Expect = 1e-25
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 187
           S   T++   TV  A K M E  L   VV  +N    G+L+ + I+ R I +N   D   
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
           +  VM         D  + D    + +       VVD  G VV
Sbjct: 77  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVV 119

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEV 60
           + I  R I R    +E P+  VM +    V SD    +    + +       VV + G V
Sbjct: 59  RSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV 118

Query: 61  IALL---DIAKCLYDAIARMERAAEKGKAI-----AAAVEGVEKHW 98
           + ++   D+++ L  A       + + K          V  +E  +
Sbjct: 119 VGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVY 164

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 47/177 (26%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 75
           V K+M  N   V  +T   +A++ M +     L V  +NG  + LL    I K     I 
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF---IP 67

Query: 76  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 135
           R ++  E                             +R  M           +  +  + 
Sbjct: 68  RNKKPDEV---------------------------PIRLVM-----------RKPIPKVK 89

Query: 136 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 191
               V      + E  L    VV    +  GI+T  D+  R +S+    D  L  + 
Sbjct: 90  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS-RYLSRASITDILLSHRT 145

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLL 56

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  102 bits (256), Expect = 2e-25
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 40/255 (15%)

Query: 19  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDA 73
            +     +    V   T   +AL  M + K+R LPVV  G      +I  +DI   +   
Sbjct: 5   VMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGG 64

Query: 74  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 133
                   +  +   AA+                  E +RE M              V+T
Sbjct: 65  SKYNLIREKHERNFLAAIN-----------------EPVREIMEEN-----------VIT 96

Query: 134 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 192
           +     +  A +  L   +  A +V  EN+   ++T +D++  ++ +    +   ++  +
Sbjct: 97  LKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV--IDDYI 154

Query: 193 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVATVGNT 249
           T +   AT    + D    M    F  LPVV  +G +V ++   D I +  +  A     
Sbjct: 155 TRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQ 213

Query: 250 AGSNNEAASTMMQKF 264
            G+  E  +  M++ 
Sbjct: 214 TGNVREITNVRMEEI 228

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 99.8 bits (249), Expect = 2e-24
 Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 57/245 (23%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVI 61
            I  +     L     PV ++M  N   +  +    EA++  +       P+V +  ++I
Sbjct: 69  LIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLI 128

Query: 62  ALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFR 118
           +L+   D+ + L D I   E                                 + + + R
Sbjct: 129 SLITERDVIRALLDKIDENEV--------------------------------IDDYITR 156

Query: 119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS 178
                       V+  +P + +    + M+        V  E +  GI+TS D +  + S
Sbjct: 157 D-----------VIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGS 205

Query: 179 Q----------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 228
                           +  +E++M  +   A     +     IM       LPVVD +  
Sbjct: 206 DWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLR 265

Query: 229 VVDVV 233
           +  ++
Sbjct: 266 IKGII 270

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 36/171 (21%)

Query: 12  ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAK 68
           +   E   +   +TR+           +  + MV+  FR LPVV  G ++ ++   D  K
Sbjct: 142 DKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIK 201

Query: 69  CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK 128
            L    A         + I                        + E M R          
Sbjct: 202 LLGSDWAFNHMQTGNVREITNV--------------------RMEEIMKRD--------- 232

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 178
             V+T    D +    + M+   + +  V  EN + +GI+T KD+L +  +
Sbjct: 233 --VITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL-KYFA 280

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 10  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---D 65
                +    + ++M R+           +  + MV      LPVV EN  +  ++   D
Sbjct: 215 GNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKD 274

Query: 66  IAKCL 70
           + K  
Sbjct: 275 VLKYF 279

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 96.8 bits (242), Expect = 7e-25
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 187
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 76  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 120

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 69.5 bits (171), Expect = 8e-15
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
           +DI  + +A  L+       ++   +  +V ++    E L  M + + R +PV+    ++
Sbjct: 58  RDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLV 117

Query: 62  ALL---DIAKCLYD 72
            ++   DIA+ L +
Sbjct: 118 GIVTEADIARHLPE 131

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 55.2 bits (134), Expect = 7e-10
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 46/170 (27%)

Query: 15  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 70
              T    +M    T V        A Q M +     LP+  ++  +  +L   DI    
Sbjct: 5   FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI-- 62

Query: 71  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 130
                   +    G     A                    T  E                
Sbjct: 63  --------KGLAAGLDPNTA--------------------TAGELARDS----------- 83

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 180
           +  +    ++      M E ++    V  E++  GI+T  DI  R + ++
Sbjct: 84  IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA-RHLPEH 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           P   T    +M     C      +  A   M +     LP+   D  +  ++
Sbjct: 4   PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML 55

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 92.2 bits (230), Expect = 3e-23
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+L   I++        V
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKV 67

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            +VM  +    +    I +A   M       L V + D +++ V+
Sbjct: 68  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVI 111

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 64.1 bits (157), Expect = 6e-13
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
            D+    IA   +L E  V +VM R+   +       EA +KMV+     L V E+ E+I
Sbjct: 50  WDVL-EAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEII 108

Query: 62  ALL---DIAKCLYD 72
            ++   DI +    
Sbjct: 109 GVISATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 45/163 (27%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 76
           V  VM  +   +       + L+  V+       VV+ G  + ++   D+ + +      
Sbjct: 3   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAI------ 56

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 136
               AE        V  V                     M R            +VTISP
Sbjct: 57  ----AEGDDLAEVKVWEV---------------------MERD-----------LVTISP 80

Query: 137 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 179
             T+  A +KM++  +   +V  +++  G++++ DIL   +++
Sbjct: 81  RATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
            VE VM  + +   I   + D L    +       VV  +G  V
Sbjct: 2   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRV 44

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 88.9 bits (221), Expect = 7e-22
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDILMRVISQNLPAD 184
           K   V++  T T+     ++ + R+  AV+T  +   +P  +++ +DIL R ++Q L  D
Sbjct: 12  KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD 70

Query: 185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                 +   +P       P+  A   M      H+ VV+++G++V V+
Sbjct: 71  -GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVL 117

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVI 61
           DI  R +A+ L+L+  P   +   +P  VL       A +KM +   RH+ VV +NGE++
Sbjct: 58  DIL-RAVAQRLDLD-GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELV 114

Query: 62  ALL---DIAKCLYDAIARMERAAE 82
            +L   D+       +        
Sbjct: 115 GVLSIRDLCFERAILLELATAEVP 138

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 51/163 (31%)

Query: 18  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL------DIAKCLY 71
              S+++ R P  +       E   ++ + +     +         +      DI + + 
Sbjct: 5   IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV- 63

Query: 72  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 131
                      +   +      +                                  +  
Sbjct: 64  ----------AQRLDLDGPAMPI---------------------A------------NSP 80

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 173
           +T+  TD V +A +KM    +   VV  +N +  G+L+ +D+ 
Sbjct: 81  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 4/44 (9%), Positives = 12/44 (27%)

Query: 185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 228
           +    +++   P        I +    +   +     +  RD  
Sbjct: 4   AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNP 47

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 87.8 bits (218), Expect = 4e-21
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 187
           S  V I    +V  A   M    + +  V   +    G+L+ KD+L   I Q     S  
Sbjct: 24  SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQEL-TSVP 82

Query: 188 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 239
           V  +MT  P       +  ++D    + + +   LPV+       +V+  +  T
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNP--TFVLSDTLAVEALQKMVQGKFRHLPVVENGE 59
           KD+    I ++  L   PV  +MTR P  T    +   ++  + +++ +   LPV+++ +
Sbjct: 66  KDLLRASIGQQ-ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTD 124

Query: 60  VIALL-------DIAKCLYD 72
               +       ++ K L  
Sbjct: 125 KGFEVIGRVTKTNMTKILVS 144

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 51/183 (27%)

Query: 5   ATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIAL 63
            T+++A +L  ++  V    +  P  +  +    +A+  M       L VV  +  ++ +
Sbjct: 6   GTQLLADKL--KKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGV 62

Query: 64  L---DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS 120
           L   D+ +           +  + +  +  V  +                     M R  
Sbjct: 63  LSRKDLLR----------ASIGQQELTSVPVHII---------------------MTR-- 89

Query: 121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR---GILTSKDILMRV 176
                     +      D V+   K ++E ++ +  V+   +K     G +T  ++   +
Sbjct: 90  -------MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142

Query: 177 ISQ 179
           +S 
Sbjct: 143 VSL 145

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 86.7 bits (215), Expect = 7e-21
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPR 164
           N  I   ++   +  +  ++    KV  +   + +  A   +++   S+  V+    K  
Sbjct: 2   NAMISIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 165 GILTSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 220
           G++++  IL  ++          +   VE+VM  +     ++     AL +  D  F  +
Sbjct: 62  GLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--I 119

Query: 221 PVVDRDGDVV 230
             V+ DG   
Sbjct: 120 CAVNEDGYFE 129

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 1   MKDIATRVIAREL----NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV- 55
              I   ++  E      LEE  V +VM ++   +  +    +AL+  +   F  +  V 
Sbjct: 66  TAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN 123

Query: 56  ENGEVIALL---DIAKCLYDAIARMER 79
           E+G    +L    I K L   + +  R
Sbjct: 124 EDGYFEGILTRRAILKLLNKKVRQHNR 150

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 44/165 (26%)

Query: 15  LEETPVSKVMTRNP--TFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAK 68
            ++  V  +M  +     V        AL  +V+  +  +PV++       +I+   I  
Sbjct: 12  FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILD 71

Query: 69  CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK 128
            +           E+ K     VE V                     M           K
Sbjct: 72  GILGLERIEFERLEEMK-----VEQV---------------------M-----------K 94

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
             +  +   D+   A +  ++       V  +    GILT + IL
Sbjct: 95  QDIPVLKLEDSFAKALEMTIDHPFI-CAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 109 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 167
           +        + ++   +    KV  + P + +  A   + +   S+  V+    K  G++
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 168 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 223
           +   ++  ++          ++  VE+VM  N     +D  ++ A+ ++ +  F  + V 
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVE 118

Query: 224 DRDGDVV 230
           + DG   
Sbjct: 119 NDDGYFA 125

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 1   MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGE 59
           M  I          LE   V +VM RN   +  D   ++A+  +V   F  + V  ++G 
Sbjct: 66  MDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGY 123

Query: 60  VIALL---DIAKCLYDAIARMERAAEKGK 85
              +    ++ K L   + R     + G+
Sbjct: 124 FAGIFTRREVLKQLNKQLHRPNGGRKLGR 152

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 47/191 (24%)

Query: 9   IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 61
           +  E N   +  V   +        V        AL  + +  +  +PV++       +I
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 62  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 121
           ++  +   +           E  K                            E M     
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKV--------------------------EEVM----- 89

Query: 122 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ-- 179
                    +  +   D+++ A   ++       V   +    GI T +++L ++  Q  
Sbjct: 90  ------NRNIPRLRLDDSLMKAVGLIVNHPFV-CVENDDGYFAGIFTRREVLKQLNKQLH 142

Query: 180 NLPADSTLVEK 190
                  L  K
Sbjct: 143 RPNGGRKLGRK 153

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 84.2 bits (209), Expect = 4e-20
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 187
             V+T    + V+ A +KML+ ++SS  V+  ENK  GI+T+ DI   +I      ++T 
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETT- 74

Query: 188 VEKVMTPNPECATIDTPIVDALHIM-----HDGKFLHLPVVDRDGDVV 230
           +  VMT +      D  I++A+  M      +     LPVVD++  +V
Sbjct: 75  IGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLV 122

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 53/176 (30%)

Query: 14  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKC 69
            L+   V  VMT+N          VEA +KM++ K   LPV+ +  +VI ++   DI   
Sbjct: 4   TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY- 62

Query: 70  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 129
                            +   +  V                     M             
Sbjct: 63  ---------NLIRDKYTLETTIGDV---------------------M-----------TK 81

Query: 130 KVVTISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQ 179
            V+TI    ++L A KKM              VV   NK  GI++  DI+ R IS+
Sbjct: 82  DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII-RTISK 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            +  V+ VMT N   A     +V+A   M   K   LPV+D +  V+ +V
Sbjct: 6   KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIV 55

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVV- 55
            DI   +I  +  LE T +  VMT++   +  D   +EA++KM            LPVV 
Sbjct: 58  TDIGYNLIRDKYTLE-TTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD 116

Query: 56  ENGEVIALL---DIAKCLYDAI 74
           +N +++ ++   DI + +   I
Sbjct: 117 KNNKLVGIISDGDIIRTISKII 138

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 84.0 bits (208), Expect = 7e-20
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 109 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 167
           I    +++   ++   + E  KV  +   + +  A   + +   ++  V+    +  G++
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 168 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 223
            +  I+  +           D   VE+VM  +     I+ PI+    ++ +  F  + V 
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE 121

Query: 224 DRDGDVVDVV 233
           + +     + 
Sbjct: 122 NDEQVFEGIF 131

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 1   MKDIATRVIAREL----NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV- 55
              I   +   E      L++  V +VM  +   +  +   ++    ++   F  + V  
Sbjct: 65  TNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN 122

Query: 56  ENGEVIALL---DIAKCLYDAIARMER 79
           +      +     + K L   I  + +
Sbjct: 123 DEQVFEGIFTRRVVLKELNKHIRSLNK 149

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 47/176 (26%)

Query: 9   IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 61
           I+ + + L E  V + M        V        AL  + +  +  +PV++       +I
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 62  ALLDIAKCLYDA-IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS 120
               I   ++       E+  +                            T+ E M    
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQI---------------------------TVEEVM---- 92

Query: 121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 176
                   + +  +   D ++     ++       V   E    GI T + +L  +
Sbjct: 93  -------LTDIPRLHINDPIMKGFGMVINNGFV-CVENDEQVFEGIFTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 188 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           V + M    + A +     +  AL ++    +  +PV+D    +  ++    I ++
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS 71

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 84.2 bits (208), Expect = 2e-18
 Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 48/235 (20%)

Query: 17  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALL---DIAKCLY 71
                +   +    +  +    +A+  +++ K   LPV+  E+G  + +L    I K L 
Sbjct: 117 REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK 176

Query: 72  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 131
             I    +     K++                      E L+   +             +
Sbjct: 177 LFITEFPKPEFMSKSL----------------------EELQIGTYAN-----------I 203

Query: 132 VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLP------AD 184
             +  T  V +A    ++ R+S+  VV  + +   I +  D++     +           
Sbjct: 204 AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 263

Query: 185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 236
           +               +   +   ++ + + +   L VVD    V  +V   D++
Sbjct: 264 ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 30  FVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAI 87
              +     +A   +V    R  P+   +    + +L I     D I  +       K+ 
Sbjct: 49  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT----DFINIL---HRYYKSA 101

Query: 88  AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKM 147
              +  +E+H         T+ E   +  F+P           +V ISP  ++  A   +
Sbjct: 102 LVQIYELEEHK------IETWREVYLQDSFKP-----------LVCISPNASLFDAVSSL 144

Query: 148 LELRLSSAVV--TVENKPRGILTSKDILMRV--------ISQNLPADSTLVEKVMTPNPE 197
           +  ++    V          ILT K IL  +          + +      ++     N  
Sbjct: 145 IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIA 204

Query: 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242
                TP+  AL I    +   LPVVD  G VVD+     + + A
Sbjct: 205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 249

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENK 162
           P +        M       +IP  SK+V    +  V  A   ++   + +A +  + +  
Sbjct: 21  PESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS 80

Query: 163 PRGILTSKDILMR--------------VISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208
             G+LT  D +                +    +     +  +       C + +  + DA
Sbjct: 81  FVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDA 140

Query: 209 LHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 241
           +  +   K   LPV+D + G+ + ++    I   
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 40/166 (24%)

Query: 24  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 79
              N   V + T    AL   VQ +   LPVV E G V+ +    D+     +       
Sbjct: 199 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN-- 256

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
                                 +    T     R   F             V+     +T
Sbjct: 257 ----------------------LDVSVTKALQHRSHYFEG-----------VLKCYLHET 283

Query: 140 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD 184
           +     +++E  +    VV   +  +GI++  DIL  ++       
Sbjct: 284 LEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTGGEKK 329

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 187
              +T     +++ A K +++  ++   +V    K  GI+TS DI   +           
Sbjct: 9   KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----- 63

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
           +E++MT N   A  D P+      M       +PVVD    VV
Sbjct: 64  IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 52/168 (30%)

Query: 18  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDA 73
           T V  ++++ P    S+   +EA + +++    HLP+V E+G+++ ++   DIAK    A
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAK----A 56

Query: 74  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 133
           +A+ ++                               T+ E M              V+T
Sbjct: 57  LAQNKK-------------------------------TIEEIM-----------TRNVIT 74

Query: 134 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQN 180
               + V     KM +  +S   VV    +  GI+TS+DI  R+    
Sbjct: 75  AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-RLFGGK 121

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
           TLV+ +++  P  A  +  I++A  I+      HLP+VD  G +V
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLV 45

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 9   IARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL--- 64
           IA+ L   +  + ++MTRN      D        KM +     +PVV +   V+ ++   
Sbjct: 53  IAKALAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSE 112

Query: 65  DIAKCLYD 72
           DI++    
Sbjct: 113 DISRLFGG 120

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 187
             + +   T  V+   + + + R+SS  ++        +  + D+L  +        S  
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78

Query: 188 VEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 236
           V + +             T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 79  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 41/174 (23%)

Query: 11  RELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDI 66
           RE +  + P+  +      N       T  ++ +Q + QG+   +P++ ENG +I +   
Sbjct: 1   RETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY-- 58

Query: 67  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 126
               YD +  ++                           N    ++ E +          
Sbjct: 59  --EAYDVLGLIKGGIY-----------------------NDLSLSVGEAL-----MRRSD 88

Query: 127 EKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTVENKPRGILTSKDILMRVI 177
           +   V T +  D +      + +    R    VV    +  G+LT  DIL  ++
Sbjct: 89  DFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 238
           +  +   N +   + TP++D + ++  G+   +P++D +G +++V    DV+ +
Sbjct: 13  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 3   DIATRVIARELNLEETPVSKVMTRNPTFV-------LSDTLAVEALQKMVQGKFRHLPVV 55
           D+   +     N     V + + R             +D L+   +  + + +     VV
Sbjct: 62  DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVV 120

Query: 56  -ENGE---VIALLDIAKCL 70
            + G    V+ L DI K +
Sbjct: 121 DDVGRLVGVLTLSDILKYI 139

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL-------MRVISQN 180
               T+  T T+  A   M  L +    +V    K  GI++ +D+L        R    +
Sbjct: 13  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
             A  T + +VM  +         + ++   M   K   LPVV     +V
Sbjct: 73  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLV 121

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 38/180 (21%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 75
           V  +MTR+P  +L      +A   M     RH+P+V  N +++ ++   D+      ++ 
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 66

Query: 76  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 135
           R  +                                L E M            + V +++
Sbjct: 67  RSAQGDSLAFET-----------------------PLFEVM-----------HTDVTSVA 92

Query: 136 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 195
           P   +  +   M + ++    V  ++   GI+T  D +   I+     + +  +++    
Sbjct: 93  PQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESEPDELDEEQ 152

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 5   ATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 64
             R    +    ETP+ +VM  + T V       E+   M + K   LPVV    ++ ++
Sbjct: 65  LQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGII 124

Query: 65  ---DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 97
              D      + +  ++  +E  +           H
Sbjct: 125 TDSDFVTIAIN-LLELQEESEPDELDEEQEGHHHHH 159

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            VE +MT +P        + DA H+M      H+P+VD +  ++ +V
Sbjct: 6   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV 52

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 30/140 (21%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 182
           +  +  + P+ +V  A + ++E +++   V+       G+++  D+L             
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 183 ----------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 220
                                     +V  +MTP+P      T + DA  ++ + KF  L
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 221 PVVDRDGDVVDVV---DVIH 237
           PVVD DG ++ ++   +V+ 
Sbjct: 133 PVVDADGKLIGILTRGNVVR 152

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 20/182 (10%)

Query: 20  VSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIAR 76
           V   MT  +N   V   T   +AL+ +V+ K   LPV+ +N  ++ ++      YD +A 
Sbjct: 6   VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVV----SDYDLLAL 61

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE--KSKVVTI 134
              +                                 +++   +   ++ +      + +
Sbjct: 62  DSISGRSQND----------TNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVV 111

Query: 135 SPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193
             +  +  A + +LE +     VV  + K  GILT  +++   +     ADS        
Sbjct: 112 RDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSISGRSQND 171

Query: 194 PN 195
            N
Sbjct: 172 TN 173

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 15  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 70
                V  +MT +P  V   T   +A + +++ KFR LPVV  +G++I +L   ++ +  
Sbjct: 95  TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVR-- 152

Query: 71  YDAIARMERAAE 82
             A  +++R A+
Sbjct: 153 --AALQIKRNAD 162

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 75.8 bits (187), Expect = 7e-17
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP----- 182
            K   +     +     ++LE  ++    V  +NK  G++    +L              
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 183 ---------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 84  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 142

Query: 234 ---DVIH 237
              +++ 
Sbjct: 143 NSLEILL 149

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 15  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDA 73
           ++   V K+++  PT V  DT   E + ++++        V  + +++ ++ +   L  +
Sbjct: 13  MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 74  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 133
                    K + I ++++ +                   E M               V 
Sbjct: 73  GFHFFGFIPKEELIRSSMKRLIAK-------------NASEIM------------LDPVY 107

Query: 134 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 173
           +     +  A K M++  +    VV  + +  G L S +IL
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 238
           V K+++  P     DTPI + +  + +        V RD  +V ++    ++ +
Sbjct: 18  VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 71

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
            VTI+   T   A +   + ++ S  VV  E K  GI++ K IL       +  D   + 
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLA 63

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
            ++  +      +  +  A  +M +  +  + VVD  G  V
Sbjct: 64  MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 56/248 (22%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 75
           V  +MT+NP  +        AL+   + K R  PVV + G+++ ++    I     +   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE--- 59

Query: 76  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 135
                                             E L   + R            V  + 
Sbjct: 60  ----------------------------------EQLAMLVKRD-----------VPVVK 74

Query: 136 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 194
             DT+  A K MLE       VV  + KP GILT  DI+ R  +++       +E     
Sbjct: 75  ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR 134

Query: 195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD---VVDVVDVIHITHAAVATVGNTAG 251
                   TP+  AL  +     + LPVVD +G+   +VD  D++  +            
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELA 194

Query: 252 SNNEAAST 259
           +++E    
Sbjct: 195 ASSEEEWI 202

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 35/252 (13%), Positives = 75/252 (29%), Gaps = 75/252 (29%)

Query: 13  LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAK 68
           +N +E  ++ ++ R+   V  +    +A + M++  +R + VV   G+ + +L   DI +
Sbjct: 55  VNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR 114

Query: 69  CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK 128
             +    + +    + +                                           
Sbjct: 115 RYFAKSEKYK--GVEIEPYYQRY------------------------------------- 135

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVV-TVENKPRGILTSKDIL-------------- 173
             V  +     +  A K +L     +  V   E    GI+   D+L              
Sbjct: 136 --VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 174 ---------------MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFL 218
                          +      L   +  V ++MT +   AT    + +    M      
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 219 HLPVVDRDGDVV 230
            LPV+  +GD++
Sbjct: 254 QLPVIRGEGDLI 265

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 17/177 (9%)

Query: 2   KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGE- 59
            DI  R  A+    +   +     R  + V   T    AL+ ++      LPVV   G  
Sbjct: 110 GDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNL 169

Query: 60  --VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMF 117
             ++   D+ +                      +E                 + + E M 
Sbjct: 170 VGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLP-NKPVAEIM- 227

Query: 118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 173
                        V+  +P  TV     KM +  +    V+  E    G++   D+L
Sbjct: 228 ----------TRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 74.8 bits (184), Expect = 6e-16
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 21/145 (14%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
               +  + TV     +M + + +   V   E   RG++  +D+L            + V
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSV 74

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHAA 242
              ++        +  I  AL +  + +  +LPVVD +  +       D ++ +    A 
Sbjct: 75  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAM 134

Query: 243 -------VATVGNTAGSNNEAASTM 260
                     + +  G   +    +
Sbjct: 135 DVPGIRFSVLLEDKPGELRKVVDAL 159

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 53/166 (31%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 75
           V K +T++   V       E L +M Q +     V    G    ++   D+     D   
Sbjct: 15  VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLD--- 71

Query: 76  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 135
                                              ++  ++                 + 
Sbjct: 72  ----------------------------------SSVFNKV-----------SLPDFFVH 86

Query: 136 PTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 180
             D +  A    LE +     VV  E + +G ++  D L  +I   
Sbjct: 87  EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
            V+K +T +         + + LH M   +     V DR+G    VV
Sbjct: 14  KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV 60

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 16  EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLY 71
            ++ V   ++    FV  +     AL   ++ +  +LPVV E   +   +   D  + L 
Sbjct: 70  LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 129

Query: 72  DAIA 75
           +A+A
Sbjct: 130 EALA 133

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
           ++     +   +   A +++     + A V    +  G++    +L     +  P     
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE--GRKGWPTVKEK 69

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
           + + +            + D L  +   K   +P+ D DG    VV
Sbjct: 70  LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVV 115

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 14/155 (9%), Positives = 41/155 (26%), Gaps = 41/155 (26%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 79
            S +   +           +A +++        PV++    + ++ ++      +   + 
Sbjct: 7   FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLS----RLLEGRKG 62

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
                                         E L E +              V +  P + 
Sbjct: 63  WPTVK-------------------------EKLGEELLE-----------TVRSYRPGEQ 86

Query: 140 VLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 173
           +      +   + S   +   + +  G+++ K IL
Sbjct: 87  LFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRIL 121

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 28/226 (12%), Positives = 67/226 (29%), Gaps = 41/226 (18%)

Query: 23  VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCL--YDAIARMERA 80
           V   +   +       EA  KM++ +   +P+++  E      +   L  Y  +  +   
Sbjct: 119 VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALN 178

Query: 81  AEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTV 140
             +                                +  P     I  +  + +   T  V
Sbjct: 179 CRE-----------------------------THFLKIPIGDLNIITQDNMKSCQMTTPV 209

Query: 141 LMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT------ 193
           +   + + + R+SS  ++        +  + D+L  +        S  V + +       
Sbjct: 210 IDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDF 269

Query: 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 236
                 T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 270 EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 39/225 (17%)

Query: 33  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 90
           +  L  ++L  ++Q      P+   +      LL       D I  +             
Sbjct: 47  TSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTT----DFINVI------------- 89

Query: 91  VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 150
                  +  S       ++ L+    +     +  ++    +I P+  +  A  KMLE 
Sbjct: 90  ------QYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES 143

Query: 151 RLSSAVV------TVENKPRGILTSKDILMRVIS-----QNLPADSTLVEKVMTPNPECA 199
           R     +      T       +LT   IL  V         L      +  +   N +  
Sbjct: 144 RSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSC 203

Query: 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHA 241
            + TP++D + ++  G+   +P++D +G +++V    DV+ +   
Sbjct: 204 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 26/218 (11%), Positives = 63/218 (28%), Gaps = 34/218 (15%)

Query: 23  VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE 82
            +     +V      ++A   M + + R +P+++                     E  +E
Sbjct: 114 AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV------------------DGETGSE 155

Query: 83  KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLM 142
              ++      + K    +          L     + ++ T       + T S    V  
Sbjct: 156 MIVSVLT-QYRILKFISMNCKETAMLRVPLN----QMTIGTWSN----LATASMETKVYD 206

Query: 143 ATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE---- 197
             K + E  +S+  +V  E     +  S D++  +   +       V + +   P     
Sbjct: 207 VIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDG 266

Query: 198 --CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                    +      +   +   L VVD +  +  ++
Sbjct: 267 VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGIL 304

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 64.1 bits (156), Expect = 9e-12
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 38/224 (16%)

Query: 33  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 90
                  +L  +        P+   E  +   LL +A    D +  ++   +      A 
Sbjct: 39  VTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMA----DFVNVIKYYYQSSSFPEAI 94

Query: 91  VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 150
            E                I+  R    R     I     + + + P  +++ A   M + 
Sbjct: 95  AE----------------IDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS 138

Query: 151 R------LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV------MTPNPEC 198
           R      +     T       +LT   IL + IS N    + L   +         N   
Sbjct: 139 RARRIPLIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAMLRVPLNQMTIGTWSNLAT 197

Query: 199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 239
           A+++T + D + ++ +     +P+V+ +G +++V    DV+H+ 
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 124 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENKPRGILTSKDILMRVI---- 177
           ++P   +++    T  V  +   +    + SA +  +  NK  G+LT  D +  +     
Sbjct: 27  VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ 86

Query: 178 SQNLPADSTLVEK--------------VMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 223
           S + P     ++K               + P          ++DA   M   +   +P++
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 224 DRDGDVVDVVDVIHITHAAV 243
           D DG+    + V  +T   +
Sbjct: 147 DVDGETGSEMIVSVLTQYRI 166

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 43/184 (23%)

Query: 11  RELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL-- 64
           +E  +   P++++      N      +T   + ++ + +     +P+V   G ++ +   
Sbjct: 175 KETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYES 234

Query: 65  -DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLST 123
            D+   + D                                 +    ++ E + +     
Sbjct: 235 VDVMHLIQD------------------------------GDYSNLDLSVGEALLKRP--- 261

Query: 124 IIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP 182
                  V T   TD +      +   R+    VV    K  GIL+  DIL  +I     
Sbjct: 262 --ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT 319

Query: 183 ADST 186
               
Sbjct: 320 TPGV 323

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 63.5 bits (154), Expect = 2e-12
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDI 66
           R++ R +      V   M  + T +  DT   E ++ +        P+VE+ E   L+ I
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 67  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 126
            +     +  ++                                   ++  +  L+   P
Sbjct: 62  VQ-RAQLVQALQAEP-------------------------PSRAPGHQQCLQDILARGCP 95

Query: 127 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ--NLPAD 184
            +   +T+    T+  A      L L S  VT   +  G ++  ++  + IS   N PA 
Sbjct: 96  TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMK-KAISNLTNPPAP 154

Query: 185 STLVE 189
              +E
Sbjct: 155 KEFLE 159

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 175 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDV 232
           R++ +N+ +    VE  M  +      DTP+ + + ++        P+V+      +V +
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 233 VDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA 270
           V    +  A  A   + A  + +    ++ +   +   
Sbjct: 62  VQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPV 99

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 13/117 (11%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVV---TVENKPRGILTSKDIL---------MRV 176
             + T++    +    K +    ++   +   T      GI+    ++            
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 177 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             Q    D         P       +T +  A ++        L V    G  V  V
Sbjct: 81  GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCV 136

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 59.4 bits (145), Expect = 4e-11
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDI 66
           RV    +++ +  ++ VMTR    +   TLAV+AL  M       + V +   ++ ++ +
Sbjct: 84  RVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHM 143

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 57.1 bits (139), Expect = 2e-10
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 134 ISPTDTVLMATKKMLELRL-SSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 192
           +    T+  A  ++    L  +A+   +    GI T  D L RV    +      +  VM
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGD-LRRVFDTGVDMRDASIADVM 101

Query: 193 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 238
           T         T  VDAL++M       + V D D     ++ V+H+
Sbjct: 102 TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH----LLGVVHM 143

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 61.1 bits (147), Expect = 5e-11
 Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 11/225 (4%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYDAIA 75
           V  +       +  +     A   M     + +PV +       +++  +I     D   
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 76  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 135
               A               +    +        + +   M   SL   I E    +   
Sbjct: 69  SNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD 128

Query: 136 PTDTVLMATKK-------MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
             +      +              S  ++ +  K    + +        S+ +     + 
Sbjct: 129 RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVD 188

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             +   N    + D  + D    M + ++ + PV+D +  VV  +
Sbjct: 189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSI 233

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 247
           VE +          +  +  A +IM D     +PV D +  ++ ++   +IT   +    
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 248 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTA 296
           +   + +  +   +        A + N +EE     G +  A+  A++ 
Sbjct: 69  SNILAKSATSLDNILDT---LSAEAQNINEERKVFPGKVVVAAMQAESL 114

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 191
           +TI+P +TV  A   M +  +    V  + K  GI+T KD  +         +  LV+++
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKD--IAAR------EGKLVKEL 155

Query: 192 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 227
           MT           + +AL IM + +   LPVVD  G
Sbjct: 156 MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERG 191

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 187
             + P  T             ++  VT +  P     G++T +D    +         T 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD--YPIDLTQT---ETK 162

Query: 188 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 227
           V  +MTP  +  T   DT + +A  I+ + K   LP++D D 
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ 204

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 132 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
           VT+ P  T+    +       +   VVT  N+  GI+T +D  +R ++      +  V  
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRD--VRFVTD----LTKSVAA 153

Query: 191 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 227
           VMTP    AT+       +    MH  +   + VV+ + 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 132 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
           +T++P  TV  A   M E ++    VV  E +  G+LT++D  +R         S  ++ 
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRD--VRFEKN----LSKKIKD 159

Query: 191 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 227
           +MTP  +      D  +  A  I+H  +   LP+V +D 
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN 198

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 187
           V +SP+ TV    +  +    S   +T          GI+TS+D  +  +++     +TL
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD--IDFLAEK--DHTTL 174

Query: 188 VEKVMTPNPECAT--IDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230
           + +VMTP  E         + +A  I+   K   LP+V+   ++V
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELV 219

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 25/122 (20%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 181
            V +    TV      +  LR ++          VV  + + +G+L+ +D+++       
Sbjct: 165 YVAVREGMTVEEV---LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------ 215

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 235
               T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV
Sbjct: 216 -DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 274

Query: 236 IH 237
           + 
Sbjct: 275 LE 276

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 13/137 (9%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNLPADS 185
            +  V +    TV  A   M + R+    V  ++     G++  + ++ +++S N     
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD-------VVDVVDVI-H 237
               K +            +     ++       + ++ ++         +   +DV   
Sbjct: 452 P-AIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTF 508

Query: 238 ITHAAVATVGNTAGSNN 254
           I         N   +  
Sbjct: 509 IAAGKQKPKANGTTNGG 525

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 181
            V+I    TV  A   M  L+  +          VV  EN   G+++ +D+++       
Sbjct: 147 FVSIVANQTVRSA---MYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------ 197

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 235
             D TL+  ++        +     D    + D  FL +PV D D  ++      D++DV
Sbjct: 198 -DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 256

Query: 236 IH 237
           I 
Sbjct: 257 ID 258

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 188
             ++P   V  A + M   R+S   +       K  GI+T++D  MR IS      +  +
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD--MRFISD----YNAPI 154

Query: 189 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 227
            + MT      A + T +  A  I+H+ +   LP+VD  G
Sbjct: 155 SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 194

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 23/120 (19%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA-------VVTVENKPRGILTSKDILMRVISQNLPA 183
           ++ +S   TV  A       R           +V   +K  G +   DI           
Sbjct: 64  MLVLSDKATVAQA---QRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-------E 113

Query: 184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 237
               +  +++ +    T +T ++DA   +   + + LPV+D  G+++          ++ 
Sbjct: 114 PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR 173

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 25/122 (20%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 181
            V +    TV      +  LR ++          VV  + + +G+L+ +D+++       
Sbjct: 145 YVAVREGMTVEEV---LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------ 195

Query: 182 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 235
               T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV
Sbjct: 196 -DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 254

Query: 236 IH 237
           + 
Sbjct: 255 LE 256

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 188
             ++P   V  A   M + R+S   V     E K  GI+T++D  MR I       S  +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD--MRFIQD----YSIKI 177

Query: 189 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 227
             VMT      A + T + +A  I+   K   LP+VD +G
Sbjct: 178 SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG 217

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 19/173 (10%)

Query: 18  TPVSKVMTRNP-----TFVLSDTLAV-EALQKMVQGKFRHLPVVENGEVIALLDIAKCLY 71
           T    VM         T +  D++ V +    + +  +   PVV + E   L+       
Sbjct: 11  TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFV-LRR 69

Query: 72  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 131
           D I  +E A +K   + +            +         LR  +               
Sbjct: 70  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-----------P 118

Query: 132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD 184
            T++    + +      +L L   +VT   +  GI+T KD+L + I+Q    D
Sbjct: 119 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL-KHIAQMANQD 170

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 10  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DI 66
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++   D+
Sbjct: 100 LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 159

Query: 67  AKCLYDAIARMER 79
            K     IA+M  
Sbjct: 160 LK----HIAQMAN 168

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 12/175 (6%)

Query: 11  RELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENG----EVIAL 63
           R     E    ++M        +  D+        + +   R   PV++        I+ 
Sbjct: 446 RRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISR 505

Query: 64  LDIAKCLYDAIARMERAAEKGKAI-----AAAVEGVEKHWGTSISGPNTFIETLRERMFR 118
            +I   L   +  +       + +     A   E +E     + SG ++        +  
Sbjct: 506 KEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLE 565

Query: 119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
           P+ S ++P     + ++    V       + L  S   VT   K  GI+  +D+ 
Sbjct: 566 PTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVA 620

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 35/295 (11%), Positives = 83/295 (28%), Gaps = 78/295 (26%)

Query: 70  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMF---RPSLSTIIP 126
           L   I       +        +E  ++ +  +       +   R + +   R +L  + P
Sbjct: 94  LMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRP 149

Query: 127 E------------KSKVVTISPTDTVLMATKKMLELRLSSAV--VTV--ENKPRGILTSK 170
                        K+  V +     V ++ K  ++ ++   +  + +   N P  +L   
Sbjct: 150 AKNVLIDGVLGSGKT-WVALD----VCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 171 DILMRVISQNL--PADSTLVEKVMT--------------PNPECATI-----DTPIVDAL 209
             L+  I  N    +D +   K+                P   C  +     +    +A 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 210 HIMHDG--KFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWD- 266
               +   K L   +  R   V D +     TH  ++   ++     +   +++ K+ D 
Sbjct: 263 ----NLSCKIL---LTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 267 -------SAMALSP--------NDDEEDNRSEGSLKFASEGADTARYLSYPSPSP 306
                    +  +P        +  +     +       +   T    S     P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3ddj_A	296	CBS domain-containing protein; structural genomics	99.97
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.96
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.95
3ddj_A	296	CBS domain-containing protein; structural genomics	99.95
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.95
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.95
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.94
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.94
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.93
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.93
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.92
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.92
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.88
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.87
4esy_A	170	CBS domain containing membrane protein; structural	99.87
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.87
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.86
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.86
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.85
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.85
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.85
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.84
4esy_A	170	CBS domain containing membrane protein; structural	99.83
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.83
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.82
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.82
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.82
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.82
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.82
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.81
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.81
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.81
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.81
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.81
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.81
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.81
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.81
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.8
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.8
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.8
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.8
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.8
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.8
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.79
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.79
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.79
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.79
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.79
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.79
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.78
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.78
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.78
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.78
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.78
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.78
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.77
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.77
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.77
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.77
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.77
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.77
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.77
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.77
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.76
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.76
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.76
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.75
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.75
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.75
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.75
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.75
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.74
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.73
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.73
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.73
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.72
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.72
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.72
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.71
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.71
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.71
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.7
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.7
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.7
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.69
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.68
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.68
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.66
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.66
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.64
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.63
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.63
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.6
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.59
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.58
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.57
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.56
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.55
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.54
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.53
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.5
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.49
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.48
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.48
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.44
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.43
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.42
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.41
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.37
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.35
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.31
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.28
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.28
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.24
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.13
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.13
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.97
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.61
2pli_A	91	Uncharacterized protein; CORC-associated region, M	97.66
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	97.62
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	97.58
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	97.52
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	97.49
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	97.48
2p13_A	90	CBS domain; alpha-beta structure, structural genom	97.46
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	97.45
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	97.43
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	97.42
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	97.36
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	97.31
3ded_A	113	Probable hemolysin; structural genomics, P protein	97.13

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=1.4e-30  Score=233.50  Aligned_cols=200  Identities=20%  Similarity=0.262  Sum_probs=168.5

Q ss_pred             hcCCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           11 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        11 ~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      .+.+....+|+|+|+++++++++++|+.+|++.|.+++++++||+| |+++|++|..|+++.+....             
T Consensus        13 ~~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~-------------   78 (296)
T 3ddj_A           13 ENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYC-------------   78 (296)
T ss_dssp             -CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC-------------
T ss_pred             hhhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhcccc-------------
Confidence            4557788999999999999999999999999999999999999999 99999999999987532100             


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeH
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  169 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~  169 (346)
                                  . ...+...+.. ....+++++|.+  +++++.+++++.++++.|.+++++++||+| +|+++|++|.
T Consensus        79 ------------~-~~~~~~~~~~-~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~  142 (296)
T 3ddj_A           79 ------------K-DSCSQGDLYH-ISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTE  142 (296)
T ss_dssp             ----------------CCHHHHHH-HHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             ------------c-ccccchhhHH-HhcccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeH
Confidence                        0 0011112211 224679999985  788999999999999999999999999998 7899999999


Q ss_pred             HHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          170 KDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       170 ~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      +|++ +.+.....  ..++.++|.+++.++++++++.++++.|.+++++++||+|++|+++|+||..|+++++.
T Consensus       143 ~dl~-~~~~~~~~--~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          143 REFL-LLYKDLDE--IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHHG-GGGGGSCC--CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             HHHH-Hhhhcccc--cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            9997 54443322  45899999999999999999999999999999999999999999999999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.96  E-value=9.5e-29  Score=219.51  Aligned_cols=195  Identities=19%  Similarity=0.298  Sum_probs=158.5

Q ss_pred             ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      .+.+|+++++++++++|+.+|+++|.+++++++||+|  +|+++|++|.+|+++.+......         ..   +...
T Consensus         6 ~~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~---------~~---~~~~   73 (280)
T 3kh5_A            6 MKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY---------NL---IREK   73 (280)
T ss_dssp             GGTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGG---------HH---HHTT
T ss_pred             HHHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchh---------hh---hhhc
Confidence            3456778999999999999999999999999999998  59999999999998753110000         00   0000


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                                ....+.. ....+++++|.+  +++++++++++.++++.|.+++++++||+| +|+++|++|.+|++ +.
T Consensus        74 ----------~~~~~~~-~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~  139 (280)
T 3kh5_A           74 ----------HERNFLA-AINEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI-RA  139 (280)
T ss_dssp             ----------STTCHHH-HTTSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHH-HH
T ss_pred             ----------cccchhH-HhhhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHH-HH
Confidence                      0001111 124679999985  788999999999999999999999999998 89999999999998 55


Q ss_pred             HhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          177 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       177 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +...... ..++.++|.+++.++++++++.++++.|.+++++++||+ ++|+++|+||..|+++++
T Consensus       140 ~~~~~~~-~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          140 LLDKIDE-NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             HGGGSCT-TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred             HhhcCCC-CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence            5544332 458999999999999999999999999999999999999 689999999999999864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.95  E-value=2.4e-28  Score=217.28  Aligned_cols=178  Identities=27%  Similarity=0.385  Sum_probs=140.7

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+++|+++++++++++|+.+|++.|.+++++++||+| +|+++|+++..|++...                       
T Consensus         1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~-----------------------   57 (282)
T 2yzq_A            1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP-----------------------   57 (282)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------------------
T ss_pred             CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh-----------------------
Confidence            478999999999999999999999999999999999999 89999999999987531                       


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  175 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~  175 (346)
                                          ...+++++|.+  +++++++++++.++++.|.+++.+++||++ +|+++|++|.+|++++
T Consensus        58 --------------------~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~  115 (282)
T 2yzq_A           58 --------------------DEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (282)
T ss_dssp             --------------------------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             --------------------ccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence                                12457788875  688999999999999999999999999999 6899999999999831


Q ss_pred             HHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          176 VISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       176 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .+..+......+++++|.+++.++++++++.++++.|.+++++++||+|++|+++|+||..|+++
T Consensus       116 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          116 YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR  180 (282)
T ss_dssp             TTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred             HHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhh
Confidence            55433222356889999999999999999999999999999999999999999999999999983

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.95  E-value=4.8e-28  Score=216.96  Aligned_cols=189  Identities=21%  Similarity=0.211  Sum_probs=163.5

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      ...+++++|+++++++.+++++.+|++.|.+++++++||+| +|+++|++|..|+++.+.                    
T Consensus        91 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~--------------------  150 (296)
T 3ddj_A           91 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK--------------------  150 (296)
T ss_dssp             HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG--------------------
T ss_pred             hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhh--------------------
Confidence            36789999999999999999999999999999999999998 799999999999875310                    


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                         ......+++++|.+  +++++++++++.++++.|.+++++++||+| +|+++|++|.+|++
T Consensus       151 -------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~  209 (296)
T 3ddj_A          151 -------------------DLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAI  209 (296)
T ss_dssp             -------------------GSCCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             -------------------cccccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHH
Confidence                               01123467788863  788999999999999999999999999999 89999999999998


Q ss_pred             HHHHhcCC------CccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          174 MRVISQNL------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       174 ~~~~~~~~------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                       +.+....      .....++.++|.++++++++++++.++++.|.+++++++||+|++|+++|+||..||++++...+
T Consensus       210 -~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          210 -KQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             -HHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             -HHHHHHHhhcChhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHh
Confidence             4433110      01246899999999999999999999999999999999999999999999999999999876654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.95  E-value=1.2e-27  Score=212.47  Aligned_cols=184  Identities=17%  Similarity=0.269  Sum_probs=160.5

Q ss_pred             cccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        17 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      ..+++++|+++++++++++++.+|++.|.+++++++||+| +|+++|++|..|+++.+..                    
T Consensus        83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~--------------------  142 (280)
T 3kh5_A           83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD--------------------  142 (280)
T ss_dssp             TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGG--------------------
T ss_pred             hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhh--------------------
Confidence            5699999999999999999999999999999999999998 7999999999998765211                    


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  175 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~  175 (346)
                                        ......++.++|.+  ++.++++++++.++++.|.+++++++||+++|+++|++|.+|++ +
T Consensus       143 ------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~-~  201 (280)
T 3kh5_A          143 ------------------KIDENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFI-K  201 (280)
T ss_dssp             ------------------GSCTTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-H
T ss_pred             ------------------cCCCCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH-H
Confidence                              00112368888874  78899999999999999999999999999999999999999998 5


Q ss_pred             HHhcCC-----------CccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          176 VISQNL-----------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       176 ~~~~~~-----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .+..+.           .....++.++|++++.++++++++.++++.|.+++++++||+|++|+++|+||..||+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          202 LLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             HHTSHHHHHHHHSCCTHHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             HHhhhhhhhhhcccchhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHh
Confidence            443211           012468999999999999999999999999999999999999999999999999999875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.95  E-value=3e-27  Score=214.44  Aligned_cols=207  Identities=16%  Similarity=0.231  Sum_probs=158.0

Q ss_pred             CC-Cccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHh
Q 019128           14 NL-EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIA   88 (346)
Q Consensus        14 ~~-~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~   88 (346)
                      ++ ...++.|+|.  .++++++.++|+.+|++.|.+++++++||+| + ++++|++|.+|++..+......    ..   
T Consensus        25 ~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~----~~---   97 (323)
T 3t4n_C           25 KFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSN----PD---   97 (323)
T ss_dssp             HHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHC----GG---
T ss_pred             HHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcC----cc---
Confidence            44 7789999998  4578899999999999999999999999999 4 5999999999998865432211    00   


Q ss_pred             hhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCE-----
Q 019128           89 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK-----  162 (346)
Q Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~-----  162 (346)
                       ..+.+...          ....+.+.+   .+.++|.  ++++++++++++.++++.|.+++++++||++ ++.     
T Consensus        98 -~~~~l~~~----------~~~~v~~i~---~~~~~~~--~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~  161 (323)
T 3t4n_C           98 -KFELVDKL----------QLDGLKDIE---RALGVDQ--LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREI  161 (323)
T ss_dssp             -GGGGGGGC----------BHHHHHHHH---HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEE
T ss_pred             -hhHHHHHH----------HHHHHHHHH---HHhCCCC--CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccc
Confidence             00000000          011122221   1234454  4788999999999999999999999999999 553     


Q ss_pred             EEEEeeHHHHHHHHHhcC--CCccccccccc---cccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHH
Q 019128          163 PRGILTSKDILMRVISQN--LPADSTLVEKV---MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH  237 (346)
Q Consensus       163 ~~Giit~~dll~~~~~~~--~~~~~~~v~~~---m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~D  237 (346)
                      ++|++|.+|++..+....  ......++.++   |.++++++++++++.++++.|.+++++++||+|++|+++|+||..|
T Consensus       162 l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~d  241 (323)
T 3t4n_C          162 VVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYD  241 (323)
T ss_dssp             EEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTH
T ss_pred             eEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence            999999999984333221  11224588999   9899999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 019128          238 ITHAAV  243 (346)
Q Consensus       238 i~~~~~  243 (346)
                      +++++.
T Consensus       242 l~~~~~  247 (323)
T 3t4n_C          242 VLGLIK  247 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998743

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.94  E-value=3e-26  Score=207.83  Aligned_cols=189  Identities=15%  Similarity=0.182  Sum_probs=156.8

Q ss_pred             ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCe-----EEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGE-----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~-----~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      +.++|.++++++++++++.+|++.|.+++++++||+| +++     ++|++|.+|+++.+......              
T Consensus       116 ~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~--------------  181 (323)
T 3t4n_C          116 ALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE--------------  181 (323)
T ss_dssp             HTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG--------------
T ss_pred             HhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc--------------
Confidence            4456688999999999999999999999999999998 554     99999999998764321100              


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCcccc---ccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  169 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~  169 (346)
                                          ......+++++   |.  ++++++.+++++.++++.|.+++++++||+| +|+++|++|.
T Consensus       182 --------------------~~~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  239 (323)
T 3t4n_C          182 --------------------THFLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEA  239 (323)
T ss_dssp             --------------------GGGCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEET
T ss_pred             --------------------hhhhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Confidence                                11234567888   75  4789999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHHhcCC-Ccccccccccccc------CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          170 KDILMRVISQNL-PADSTLVEKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       170 ~dll~~~~~~~~-~~~~~~v~~~m~~------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +|++ +++..+. .....+++++|++      +++++++++++.++++.|.+++++++||+|++|+++|+||..||++++
T Consensus       240 ~dl~-~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l  318 (323)
T 3t4n_C          240 YDVL-GLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  318 (323)
T ss_dssp             THHH-HHHHTTHHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHH-HHHhhchhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            9998 5554432 1225689999987      789999999999999999999999999999999999999999999987


Q ss_pred             HHH
Q 019128          243 VAT  245 (346)
Q Consensus       243 ~~~  245 (346)
                      ++.
T Consensus       319 ~~~  321 (323)
T 3t4n_C          319 LLG  321 (323)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            653

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.94  E-value=5.1e-27  Score=213.60  Aligned_cols=201  Identities=21%  Similarity=0.253  Sum_probs=156.3

Q ss_pred             Ccccccccc--cCCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           16 EETPVSKVM--TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        16 ~~~~v~dim--~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      ...+|+|+|  .++++++++++|+.+|++.|.+++++++||+| + ++++|++|.+|++..+..........       .
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~-------~  105 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQ-------I  105 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTT-------C
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccc-------h
Confidence            567999999  78899999999999999999999999999999 5 78999999999987654322111000       0


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTS  169 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~  169 (346)
                      ..+.         ... ...+..     .++++|.+  +++++++++++.++++.|.+++++++||++  +|+++|++|.
T Consensus       106 ~~l~---------~~~-~~~~~~-----~~~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~  168 (330)
T 2v8q_E          106 YELE---------EHK-IETWRE-----VYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH  168 (330)
T ss_dssp             CCGG---------GCB-HHHHHH-----HHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECH
T ss_pred             hHHh---------hcc-HHHHHH-----HHhhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcH
Confidence            0000         000 111111     24567763  789999999999999999999999999998  6899999999


Q ss_pred             HHHHHHHHhcCCC------ccccccccc--cc-cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          170 KDILMRVISQNLP------ADSTLVEKV--MT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       170 ~dll~~~~~~~~~------~~~~~v~~~--m~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      +|++ +++.....      ....+++++  |. +++.++++++++.++++.|.+++++++||+|++|+++|+||..|+++
T Consensus       169 ~dl~-~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~  247 (330)
T 2v8q_E          169 KRIL-KFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVIN  247 (330)
T ss_dssp             HHHH-HHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGG
T ss_pred             HHHH-HHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHH
Confidence            9998 44432111      012344554  54 78999999999999999999999999999999999999999999997


Q ss_pred             H
Q 019128          241 A  241 (346)
Q Consensus       241 ~  241 (346)
                      .
T Consensus       248 ~  248 (330)
T 2v8q_E          248 L  248 (330)
T ss_dssp             G
T ss_pred             H
Confidence            5

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.93  E-value=1.4e-25  Score=204.46  Aligned_cols=208  Identities=13%  Similarity=0.175  Sum_probs=155.9

Q ss_pred             CCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           15 LEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        15 ~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      +...+|+|+|++  +++++++++|+.+|++.|.+++++++||+| + ++++|+|+.+|++..+........  ...   .
T Consensus        19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~--~~~---~   93 (334)
T 2qrd_G           19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSS--FPE---A   93 (334)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCS--CGG---G
T ss_pred             HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccC--Ccc---H
Confidence            345899999975  478899999999999999999999999998 4 799999999999876543211000  000   0


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CE----EE
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NK----PR  164 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~----~~  164 (346)
                      +..+.      ..    ....+.+.     ++++|.+..+++++.+++++.++++.|.+++++++||++ + ++    ++
T Consensus        94 ~~~~~------~~----~~~~i~~~-----l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~  158 (334)
T 2qrd_G           94 IAEID------KF----RLLGLREV-----ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIV  158 (334)
T ss_dssp             GGGGG------SC----BHHHHHHH-----HHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEE
T ss_pred             HHHHh------hh----chhhHHHH-----HHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceE
Confidence            00000      00    01112211     124555323348999999999999999999999999998 4 34    99


Q ss_pred             EEeeHHHHHHHHHhcC--CCcccccccc---ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHH
Q 019128          165 GILTSKDILMRVISQN--LPADSTLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  239 (346)
Q Consensus       165 Giit~~dll~~~~~~~--~~~~~~~v~~---~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~  239 (346)
                      |++|.+|++..+....  ......++++   +|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..|++
T Consensus       159 Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~  238 (334)
T 2qrd_G          159 SVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVM  238 (334)
T ss_dssp             EEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHH
T ss_pred             EEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHH
Confidence            9999999984333211  0112357788   5889999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 019128          240 HAA  242 (346)
Q Consensus       240 ~~~  242 (346)
                      +++
T Consensus       239 ~~~  241 (334)
T 2qrd_G          239 HLI  241 (334)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.93  E-value=7.7e-26  Score=201.04  Aligned_cols=187  Identities=18%  Similarity=0.239  Sum_probs=152.7

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHH-HHHHHHHHHHhhhhhHhhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLY-DAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~-~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      ...+++++|.++++++++++++.+|++.|.+++.+.+||+| +|+++|++|..|+++ .+...                 
T Consensus        58 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~-----------------  120 (282)
T 2yzq_A           58 DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS-----------------  120 (282)
T ss_dssp             ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC-----------------
T ss_pred             ccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc-----------------
Confidence            36789999999899999999999999999999999999999 689999999999976 32100                 


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                                          ......+++++|.  .+++++++++++.++++.|.+++++++||++ +|+++|++|.+|+
T Consensus       121 --------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl  178 (282)
T 2yzq_A          121 --------------------EKYKGVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL  178 (282)
T ss_dssp             --------------------SGGGGCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGG
T ss_pred             --------------------CCcccCcHHHHhC--CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHH
Confidence                                0011345788886  3788999999999999999999999999998 8899999999999


Q ss_pred             H------HHHH------hc-----------------CCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEE
Q 019128          173 L------MRVI------SQ-----------------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV  223 (346)
Q Consensus       173 l------~~~~------~~-----------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv  223 (346)
                      +      +.+.      ..                 .......+++++|++++.++++++++.+|++.|.+++++++||+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  258 (282)
T 2yzq_A          179 LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVI  258 (282)
T ss_dssp             GGCGGGCC--------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             hhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEE
Confidence            7      2221      00                 01112578999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEehHHHHHH
Q 019128          224 DRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       224 d~~g~~~Giit~~Di~~~  241 (346)
                      |++|+++|+||..|++++
T Consensus       259 d~~~~lvGiit~~Dil~~  276 (282)
T 2yzq_A          259 RGEGDLIGLIRDFDLLKV  276 (282)
T ss_dssp             ETTTEEEEEEEHHHHGGG
T ss_pred             CCCCCEEEEEeHHHHHHH
Confidence            988899999999999975

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.92  E-value=1.9e-24  Score=196.58  Aligned_cols=192  Identities=16%  Similarity=0.214  Sum_probs=154.7

Q ss_pred             ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      ++++|.++++++++++++.+|++.|.+++++++||+|  +|+++|+||..|+++++.....                   
T Consensus       120 ~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~-------------------  180 (330)
T 2v8q_E          120 YLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT-------------------  180 (330)
T ss_dssp             HSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC-------------------
T ss_pred             HhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhh-------------------
Confidence            3577899999999999999999999999999999998  5899999999999876422100                   


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCcccc--ccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  174 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~  174 (346)
                        .. ...        . ....++.++  |. ..+++++.+++++.++++.|.+++++++||++ +|+++|++|.+|++ 
T Consensus       181 --~~-~~~--------~-~~~~~v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~-  246 (330)
T 2v8q_E          181 --EF-PKP--------E-FMSKSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI-  246 (330)
T ss_dssp             --SS-SCC--------G-GGGSBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTG-
T ss_pred             --cc-Cch--------h-hhcCCHHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHH-
Confidence              00 000        0 001223333  32 13688999999999999999999999999999 89999999999998 


Q ss_pred             HHHhcC-CCcccccccccc------ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          175 RVISQN-LPADSTLVEKVM------TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       175 ~~~~~~-~~~~~~~v~~~m------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +..... ......++.++|      +++++++++++++.++++.|.+++++++||+|++|+++|+||..|+++++..
T Consensus       247 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          247 NLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             GGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             HHHhccccccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Confidence            444432 222256788888      4899999999999999999999999999999999999999999999998654

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.92  E-value=3.6e-24  Score=195.03  Aligned_cols=187  Identities=16%  Similarity=0.194  Sum_probs=155.9

Q ss_pred             cccCCC--eeecCCccHHHHHHHHHhCCcceeeeee-CC-e----EEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           23 VMTRNP--TFVLSDTLAVEALQKMVQGKFRHLPVVE-NG-E----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        23 im~~~~--i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~-~----~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      +|.+++  +++++++++.+|++.|.+++++++||+| +| +    ++|++|..|+++.+.....                
T Consensus       112 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~----------------  175 (334)
T 2qrd_G          112 IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK----------------  175 (334)
T ss_dssp             HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG----------------
T ss_pred             hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc----------------
Confidence            477677  9999999999999999999999999998 44 4    9999999999876432100                


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccc---cccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  170 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~---im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~  170 (346)
                                        .......++++   +|.  +++.++++++++.++++.|.+++++++||++ +|+++|+||.+
T Consensus       176 ------------------~~~~~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~  235 (334)
T 2qrd_G          176 ------------------ETAMLRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESV  235 (334)
T ss_dssp             ------------------GGGGCCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETH
T ss_pred             ------------------chhhhhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHH
Confidence                              00012345777   466  4788999999999999999999999999999 78999999999


Q ss_pred             HHHHHHHhcCC-Ccccccccccccc------CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          171 DILMRVISQNL-PADSTLVEKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       171 dll~~~~~~~~-~~~~~~v~~~m~~------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      |++ +.+..+. .....++.++|.+      ++.++++++++.++++.|.+++++++||+|++|+++|+||..|+++++.
T Consensus       236 dl~-~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          236 DVM-HLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  314 (334)
T ss_dssp             HHH-HHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHH-HHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            998 5554432 2235789999984      8999999999999999999999999999999999999999999999876


Q ss_pred             HHc
Q 019128          244 ATV  246 (346)
Q Consensus       244 ~~i  246 (346)
                      ...
T Consensus       315 ~~~  317 (334)
T 2qrd_G          315 YDK  317 (334)
T ss_dssp             SCC
T ss_pred             hcc
Confidence            544

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.88  E-value=2.7e-22  Score=162.21  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=112.5

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCc---ccccccccccc
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA---DSTLVEKVMTP  194 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~---~~~~v~~~m~~  194 (346)
                      .++.++|+|+.+++++.+++|+.+|+++|.+++++++||+| +|+++|++|.+|+++.+.......   ...++.++|.+
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            46899999999999999999999999999999999999999 799999999999985444433221   25689999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCC
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  249 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~  249 (346)
                      ++.++++++++.++++.|.+++  .+||||++|+++|+||.+||++++.+.+.+.
T Consensus        95 ~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~~~  147 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHDF  147 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSCC-
T ss_pred             CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhccc
Confidence            9999999999999999998876  4999999999999999999999987776543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.87  E-value=3.3e-22  Score=156.78  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=110.9

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      .+++++|+++.+++++++++++.+|++.|.+++++++||++  +|+++|++|.+|++ +....+......++.++| +++
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~-~~~~~~~~~~~~~v~~~m-~~~   79 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKEIMLRAA-DEI   79 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHH-HHHTSSSCCCHHHHHHHS-BCC
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHH-HHHhccCccchhhHHHhc-cCC
Confidence            35789998767899999999999999999999999999996  47999999999998 666554433346789999 789


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      .++++++++.++++.|.+++++.+||+|++|+++|+||..|+++++++++
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i  129 (130)
T 3hf7_A           80 YFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  129 (130)
T ss_dssp             CEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred             eEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999988764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.87  E-value=1.9e-22  Score=165.60  Aligned_cols=142  Identities=23%  Similarity=0.318  Sum_probs=113.3

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      +.+++|+|+|+++++++++++|+.+|++.|.+++++++||+| +|+++|+||.+|+++.............         
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~---------   85 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEI---------   85 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHH---------
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhh---------
Confidence            567999999999999999999999999999999999999998 8999999999999865321111000000         


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                          ...  ...........+.....+++++|++  +++++++++++.+|+++|.+++++++||+++|+++|+||.+|++
T Consensus        86 ----~~~--~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil  157 (170)
T 4esy_A           86 ----LSR--AIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLL  157 (170)
T ss_dssp             ----HTT--TSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ----hhh--ccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHH
Confidence                000  0011223334445566789999985  89999999999999999999999999999999999999999998

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.87  E-value=1.3e-21  Score=161.04  Aligned_cols=130  Identities=14%  Similarity=0.123  Sum_probs=113.6

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+|+.+++++++++++.+|++.|.+++++++||++ + ++++|+||.+|++ +....+.   ..++.++| 
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~~---~~~v~~im-  113 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL-SESIAGE---RLELVDLV-  113 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH-HHHHTTC---CCCGGGGC-
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH-HHHhhcC---cccHHHHh-
Confidence            34567999999767899999999999999999999999999999 5 8999999999998 5544432   56899999 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCC
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA  250 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~  250 (346)
                      ++++++++++++.++++.|.+++++++||+|++|+++|+||..|+++++++.+.++.
T Consensus       114 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de~  170 (172)
T 3lhh_A          114 KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQED  170 (172)
T ss_dssp             BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC---
T ss_pred             cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCcccc
Confidence            999999999999999999999999999999999999999999999999998886654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.87  E-value=2.6e-22  Score=158.64  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=108.1

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      .+++++|+|+.+++++++++++.+|++.|.+++++++||++ + |+++|++|.+|++ +.+..+. ....+++++|. ++
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~-~~~~~v~~~m~-~~   79 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL-PLILKAD-GDSDDVKKLLR-PA   79 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGGSSS-GGGCCGGGTCB-CC
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHhcc-CCCcCHHHHcC-CC
Confidence            46889998766889999999999999999999999999999 5 7999999999997 5444222 23678999995 59


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCC
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA  250 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~  250 (346)
                      .++++++++.++++.|.+++++++||+|++|+++|+||..|+++++++++.++.
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de~  133 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEH  133 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--------
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCcc
Confidence            999999999999999999999999999999999999999999999888776554

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.86  E-value=2.7e-21  Score=154.95  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=113.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+++.+++++++++++.++++.|.+++++++||++ + |+++|++|.+|++..+....    ..++.++| 
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-   94 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL-   94 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-
Confidence            45678999999767899999999999999999999999999999 4 89999999999984433322    46899999 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      +++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++++++
T Consensus        95 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i  147 (148)
T 3lv9_A           95 RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI  147 (148)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred             CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence            89999999999999999999999999999999999999999999999988865

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.86  E-value=1.6e-21  Score=152.79  Aligned_cols=124  Identities=15%  Similarity=0.181  Sum_probs=109.4

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  194 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  194 (346)
                      ...+++++|+++..++++++++++.+|++.|.+++++++||++ + |+++|++|.+|++ +....+..  ..++.++| +
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~~~~--~~~v~~~m-~   79 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELF-KMQQSGSG--QKQLGAVM-R   79 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHH-HHHHTTTT--TSBHHHHS-E
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHH-HHHhcCCC--cCCHHHHh-c
Confidence            3467999999867788999999999999999999999999999 5 8999999999998 55444332  56899999 5


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      ++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++++
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999998765

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.86  E-value=2e-21  Score=152.05  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=109.4

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  195 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  195 (346)
                      ..+++++|+|+.+++++++++++.+|++.|.+++++++||++ + |+++|++|.+|++ +....    ...+++++| ++
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~----~~~~v~~~m-~~   77 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLL-RYMLE----PALDIRSLV-RP   77 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGG-GGGTC----TTSCGGGGC-BC
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHH-hHhcc----CCcCHHHHh-CC
Confidence            456899999767889999999999999999999999999999 4 8999999999997 44332    256899999 46


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      +.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++++++
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            899999999999999999999999999999999999999999999988865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.85  E-value=3.7e-21  Score=155.10  Aligned_cols=130  Identities=14%  Similarity=0.139  Sum_probs=111.0

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE-e--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT-V--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~-d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      ...+++++|+++.+++++++++++.+|++.|.+++++++||+ +  +|+++|+||.+|+++.+... .   ..++.++| 
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~-~---~~~v~~~m-   92 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID-D---KAKISTIM-   92 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH-T---TSBGGGTC-
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC-C---CCcHHHHh-
Confidence            346799999876689999999999999999999999999999 5  48999999999998443332 2   56899999 


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCC
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG  251 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~  251 (346)
                      +++.++++++++.++++.|.+++++++||+|++|+++|+||..|+++++++.+.++.+
T Consensus        93 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de~~  150 (153)
T 3oco_A           93 RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQD  150 (153)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCccc
Confidence            9999999999999999999999999999999999999999999999999988866543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.85  E-value=7.7e-21  Score=156.36  Aligned_cols=131  Identities=15%  Similarity=0.160  Sum_probs=115.1

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+|+.+++++++++++.++++.|.+++++++||++ + ++++|+||.+|++.......    ..++.  |.
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~--~~  106 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN--RL  106 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG--GS
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH--hc
Confidence            45678999999767899999999999999999999999999998 4 79999999999984433321    35677  45


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCC
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGS  252 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~  252 (346)
                      ++++++++++++.++++.|.+++++.+||+|++|+++|+||..||++++++.+.++.+.
T Consensus       107 ~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A          107 RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcccc
Confidence            88999999999999999999999999999999999999999999999999988776543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.85  E-value=7.6e-21  Score=165.46  Aligned_cols=219  Identities=17%  Similarity=0.213  Sum_probs=142.2

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHH--HhhhhhHhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERA--AEKGKAIAAAVE   92 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~--~~~~~~~~~~~~   92 (346)
                      ...+|+|+|+++++++++++++.+|+++|.+++++++||+| +|+++|++|..|+++.+.......  ......+.....
T Consensus         5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~   84 (245)
T 3l2b_A            5 VKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILD   84 (245)
T ss_dssp             CCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHH
T ss_pred             ccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHH
Confidence            46899999999999999999999999999999999999999 699999999999988754211000  000000000000


Q ss_pred             hhhhccCCCCCChhhHHHHH-HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCC----------
Q 019128           93 GVEKHWGTSISGPNTFIETL-RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN----------  161 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~----------  161 (346)
                      .+...+-.+..........+ ...+....+.+.+.+ ..++.+..   -.++...+.+.+.++++++++.          
T Consensus        85 ~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~-~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a  160 (245)
T 3l2b_A           85 TLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE-GDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKEIIELA  160 (245)
T ss_dssp             HTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCT-TCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred             HhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCC-CCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence            00000000000000000000 000011122333443 34444533   3688888899999999888522          


Q ss_pred             ---EEEEEeeHHHHHHHHHhcCCCccccccccccc-cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHH
Q 019128          162 ---KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH  237 (346)
Q Consensus       162 ---~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~D  237 (346)
                         .+..+.|..|.+ ......  ....+++++|+ +++.++++++++.++++.|.+++++++||+|++|+++|+||.+|
T Consensus       161 ~~~~~~~i~t~~d~~-~~~~~~--~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~d  237 (245)
T 3l2b_A          161 KKNNITVITTPHDSF-TASRLI--VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFH  237 (245)
T ss_dssp             HHHTCEEEECSSCHH-HHHHHG--GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-
T ss_pred             HHcCCeEEEeCCChH-HHHHHH--hcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHH
Confidence               245677777775 222211  12568999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 019128          238 ITHA  241 (346)
Q Consensus       238 i~~~  241 (346)
                      ++++
T Consensus       238 ll~~  241 (245)
T 3l2b_A          238 LIST  241 (245)
T ss_dssp             ----
T ss_pred             hhch
Confidence            9975

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.84  E-value=3.2e-21  Score=150.40  Aligned_cols=122  Identities=19%  Similarity=0.267  Sum_probs=106.6

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      .+++++|.+..+++++++++++.+|++.|.+++++++||++ + |+++|++|.+|++ +.+....  ...+++++| +++
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~--~~~~v~~~m-~~~   78 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDA--EAFSMDKVL-RTA   78 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGSTTC--CCCCHHHHC-BCC
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHhccC--CCCCHHHHc-CCC
Confidence            46789998755689999999999999999999999999999 5 7999999999997 4443322  256899999 558


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      .++++++++.++++.|.+++++++||+|++|+++|+||..|+++++++
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            899999999999999999999999999999999999999999998654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.83  E-value=6.9e-21  Score=156.29  Aligned_cols=127  Identities=24%  Similarity=0.258  Sum_probs=109.0

Q ss_pred             HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC----------
Q 019128          113 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------  181 (346)
Q Consensus       113 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~----------  181 (346)
                      ...+...+++++|++  +++++.+++++.+|++.|.+++++++||+| +|+++|+||.+|++ +......          
T Consensus        12 ~~~l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll-~~~~~~~~~~~~~~~~~   88 (170)
T 4esy_A           12 ARAIRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFL-RGSIPFWIYEASEILSR   88 (170)
T ss_dssp             HHHHHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGG-GGTCCTTHHHHHHHHTT
T ss_pred             HHHHcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHH-HHHhhccccchhhhhhh
Confidence            344556789999985  899999999999999999999999999999 89999999999997 2211100          


Q ss_pred             ------------CccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          182 ------------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       182 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                                  .....+++++|+++++++++++++.+|++.|.+++++++||+| +|+++|+||..||+++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           89 AIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             TSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred             ccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                        0114578999999999999999999999999999999999998 699999999999998753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.83  E-value=1.2e-19  Score=142.53  Aligned_cols=125  Identities=28%  Similarity=0.413  Sum_probs=112.1

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      ..+++++|.+  ++.++++++++.++++.|.+++++++||+++|+++|++|.+|++ +++..+... ..++.++|.+++.
T Consensus         3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~~   78 (133)
T 2ef7_A            3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASLI   78 (133)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECCC
T ss_pred             cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHH-HHHhcCCCc-ccCHHHHcCCCCE
Confidence            4578999985  68899999999999999999999999999989999999999997 555544332 5789999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..|++++....+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~  127 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF  127 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999866554

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.82  E-value=1.8e-19  Score=144.34  Aligned_cols=128  Identities=19%  Similarity=0.318  Sum_probs=108.4

Q ss_pred             HHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHh
Q 019128            7 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAE   82 (346)
Q Consensus         7 ~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~   82 (346)
                      +++.....+...+|+++|++  +++++++++|+.+|++.|.+++++++||+| + |+++|+||.+|+++.....      
T Consensus        12 ~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~------   85 (148)
T 3lv9_A           12 RLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE------   85 (148)
T ss_dssp             ------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH------
T ss_pred             HHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC------
Confidence            34555668899999999998  999999999999999999999999999999 5 8999999999998753210      


Q ss_pred             hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 019128           83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  161 (346)
Q Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~  161 (346)
                                                        ...+++++|.   +++++++++++.++++.|.+++.+.+||+| +|
T Consensus        86 ----------------------------------~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g  128 (148)
T 3lv9_A           86 ----------------------------------NKIELEEILR---DIIYISENLTIDKALERIRKEKLQLAIVVDEYG  128 (148)
T ss_dssp             ----------------------------------SCCCGGGTCB---CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             ----------------------------------CCccHHHhcC---CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence                                              1456889993   588999999999999999999999999999 69


Q ss_pred             EEEEEeeHHHHHHHHH
Q 019128          162 KPRGILTSKDILMRVI  177 (346)
Q Consensus       162 ~~~Giit~~dll~~~~  177 (346)
                      +++|+||..|+++.+.
T Consensus       129 ~~~Giit~~dil~~l~  144 (148)
T 3lv9_A          129 GTSGVVTIEDILEEIV  144 (148)
T ss_dssp             SEEEEEEHHHHHHHHH
T ss_pred             CEEEEEEHHHHHHHHh
Confidence            9999999999995544

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.82  E-value=6.3e-20  Score=143.19  Aligned_cols=122  Identities=13%  Similarity=0.077  Sum_probs=108.8

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      ..+++++|.+  ++.++++++++.+|++.|.+++++++||+++|+++|++|.+|++ +....+.. ...+++++|.+++.
T Consensus         4 s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~-~~~~v~~~m~~~~~   79 (128)
T 3gby_A            4 SVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLL-EGRKGWPT-VKEKLGEELLETVR   79 (128)
T ss_dssp             TCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-TTCSSSCC-TTCBCCGGGCBCCC
T ss_pred             ceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHH-HHHhhCCc-ccCcHHHHccCCCc
Confidence            4568999985  68899999999999999999999999999999999999999997 54443322 13679999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++.
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.82  E-value=8.5e-20  Score=143.76  Aligned_cols=124  Identities=27%  Similarity=0.464  Sum_probs=109.6

Q ss_pred             CccccccCC-CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      +++++|.|+ ++++++++++++.++++.|.+++++++||+++|+++|++|.+|+++.+...+......++.++|.+++.+
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~   86 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   86 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeE
Confidence            577888733 4789999999999999999999999999999899999999999974455544334467899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +++++++.++++.|.+++.+++||+| +|+++|+||..|+++++..
T Consensus        87 v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           87 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999 7999999999999987543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.82  E-value=3.9e-19  Score=144.11  Aligned_cols=133  Identities=20%  Similarity=0.215  Sum_probs=116.0

Q ss_pred             HHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccc
Q 019128          111 TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE  189 (346)
Q Consensus       111 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~  189 (346)
                      .+...+...+++++|.+   ++++.+++++.+|++.|.+++++++||++ +|+++|+||.+|++ +.+..+......++.
T Consensus         9 ~l~~~l~~~~v~~im~~---~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~   84 (159)
T 3fv6_A            9 LLADKLKKLQVKDFQSI---PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL-RASIGQQELTSVPVH   84 (159)
T ss_dssp             HHHHHHTTCBGGGSCBC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHHTSCSCTTTCBGG
T ss_pred             HHHHHHhhCCHHHHcCC---CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHhhccCcccCcCHH
Confidence            34556667789999984   55999999999999999999999999999 89999999999998 544433333467899


Q ss_pred             ccccc--CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCC---cEEEEEehHHHHHHHHHHcc
Q 019128          190 KVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDG---DVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       190 ~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g---~~~Giit~~Di~~~~~~~i~  247 (346)
                      ++|.+  ++.++++++++.++++.|.+++++++||+|++|   +++|+||..||++++.....
T Consensus        85 ~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~  147 (159)
T 3fv6_A           85 IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSE  147 (159)
T ss_dssp             GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHT
T ss_pred             HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhh
Confidence            99998  899999999999999999999999999999888   99999999999998765543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.81  E-value=2e-19  Score=139.54  Aligned_cols=120  Identities=22%  Similarity=0.231  Sum_probs=107.5

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  199 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v  199 (346)
                      +++++|.+  +++++++++++.++++.|.+++.+++||+|+|+++|++|.+|++ +++..+......++.++|.+++.++
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~-~~~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHH-HHHhcCCcccccCHHHHcCCCCeEE
Confidence            46778874  78899999999999999999999999999999999999999998 5555444434678999999999999


Q ss_pred             cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ++++++.++++.|.+++.+++||+|+ |+++|+||..|+++++.
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999998 99999999999998743

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.81  E-value=2.8e-19  Score=141.33  Aligned_cols=128  Identities=24%  Similarity=0.455  Sum_probs=112.9

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  195 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  195 (346)
                      ...+++++|.+  +++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++++++..+. ....++.++|.++
T Consensus         5 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~   81 (138)
T 2yzi_A            5 MKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN   81 (138)
T ss_dssp             TTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred             hhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence            34578999974  789999999999999999999999999999 8999999999999745554433 2367899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccC
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  248 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~  248 (346)
                      +.++++++++.++++.|.+++.+++ |+|++|+++|+||..|+++++...++.
T Consensus        82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~  133 (138)
T 2yzi_A           82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET  133 (138)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred             CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence            9999999999999999999999999 999899999999999999987765543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.81  E-value=2.2e-19  Score=138.76  Aligned_cols=116  Identities=25%  Similarity=0.310  Sum_probs=105.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      +++++|.+  +++++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ +.+..+    ..++.++|.+++.+
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~----~~~v~~~~~~~~~~   74 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA-KALAQN----KKTIEEIMTRNVIT   74 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHH-HHHHTT----CCBGGGTSBSSCCC
T ss_pred             chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHH-HHHHhc----ccCHHHHhcCCCeE
Confidence            46788875  788999999999999999999999999999 89999999999998 554443    34899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++++.++++.|.+++.+++||+|++|+++|+||..|+++++
T Consensus        75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           75 AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence            99999999999999999999999999999999999999999874

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.81  E-value=3.9e-19  Score=141.08  Aligned_cols=119  Identities=22%  Similarity=0.362  Sum_probs=107.0

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC--EEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  195 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~--~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  195 (346)
                      .+++++|.+  ++.++++++++.++++.|.+++++++||++ ++  +++|++|.+|++ +.+..+... ..++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL-DGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT-TSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHH-HHHhcCCCC-CCCHHHHcCCC
Confidence            468899984  789999999999999999999999999999 56  899999999998 555444332 57899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +.+++++ ++.++++.|.+++.+++||+|++|+++|+||..|++++.
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence            9999999 999999999999999999999999999999999999764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.81  E-value=1.5e-19  Score=145.02  Aligned_cols=129  Identities=18%  Similarity=0.166  Sum_probs=111.8

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-----Cccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVE  189 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~-----~~~~~~v~  189 (346)
                      +...+++++|.+..+++++++++++.+|++.|.+++++++||+| +|+++|+||.+|++ +.+....     .....++.
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v~   90 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMIL-DGILGLERIEFERLEEMKVE   90 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHTBCSSSBCGGGGGGCBGG
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHH-HHHHhhcccchhHHhcCCHH
Confidence            33467899998655789999999999999999999999999999 89999999999998 5543211     11357899


Q ss_pred             cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128          190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       190 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~  247 (346)
                      ++|.+++.++++++++.++++.|.++++  +||+|++|+++|+||..|+++++...+.
T Consensus        91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A           91 QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence            9999999999999999999999999987  9999999999999999999998777664

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.81  E-value=3.1e-19  Score=146.71  Aligned_cols=128  Identities=15%  Similarity=0.235  Sum_probs=103.4

Q ss_pred             HHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhh
Q 019128            8 VIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEK   83 (346)
Q Consensus         8 ~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~   83 (346)
                      ++.+...+...+|+++|+  ++++++++++|+.+|++.|.+++++++||+| + |+++|+||.+|+++....        
T Consensus        32 ~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~--------  103 (172)
T 3lhh_A           32 MVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIA--------  103 (172)
T ss_dssp             -----------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHT--------
T ss_pred             HHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhh--------
Confidence            344555888999999999  7889999999999999999999999999999 5 899999999999875210        


Q ss_pred             hhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCE
Q 019128           84 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  162 (346)
Q Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~  162 (346)
                                                      -...+++++|.   +++++++++++.++++.|.+++.+.+||+| +|+
T Consensus       104 --------------------------------~~~~~v~~im~---~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~  148 (172)
T 3lhh_A          104 --------------------------------GERLELVDLVK---NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGD  148 (172)
T ss_dssp             --------------------------------TCCCCGGGGCB---CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             --------------------------------cCcccHHHHhc---CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCC
Confidence                                            01456899993   689999999999999999999999999999 699


Q ss_pred             EEEEeeHHHHHHHHHh
Q 019128          163 PRGILTSKDILMRVIS  178 (346)
Q Consensus       163 ~~Giit~~dll~~~~~  178 (346)
                      ++|+||..|+++.+..
T Consensus       149 lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          149 LKGLVTLQDMMDALTG  164 (172)
T ss_dssp             EEEEEEHHHHHHHHHT
T ss_pred             EEEEeeHHHHHHHHhC
Confidence            9999999999955443

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=8.2e-20  Score=149.08  Aligned_cols=130  Identities=22%  Similarity=0.347  Sum_probs=112.4

Q ss_pred             hCCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|.+. .+++++++++++.+|++.|.+++++++||+| +|+++|+||.+|+++.+..........++.++|.
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~  100 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMT  100 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSB
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhc
Confidence            4556789999852 3689999999999999999999999999999 8899999999999844443321233678999999


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      +++.++++++++.++++.|.+++++++||+|+ |+++|+||..||++++....
T Consensus       101 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~  152 (165)
T 3fhm_A          101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEI  152 (165)
T ss_dssp             SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC-
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 99999999999999865444

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.81  E-value=1.4e-19  Score=146.45  Aligned_cols=129  Identities=22%  Similarity=0.371  Sum_probs=112.7

Q ss_pred             CCccccccCC----CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 019128          119 PSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  194 (346)
Q Consensus       119 ~~v~~im~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  194 (346)
                      .+++++|.+.    ++++++++++++.+|++.|.+++++++||.++|+++|++|.+|+++.+..........++.++|.+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   86 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA   86 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC
Confidence            3588888864    567999999999999999999999999997799999999999998444444433346789999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccC
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  248 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~  248 (346)
                      ++.++++++++.++++.|.+++++++||+| +|+++|+||..||++++......
T Consensus        87 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~  139 (157)
T 4fry_A           87 KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQF  139 (157)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999 79999999999999997766543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.80  E-value=2e-19  Score=144.22  Aligned_cols=121  Identities=20%  Similarity=0.231  Sum_probs=109.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      ..+++++|.+..+++++++++++.++++.|.+++++++||++ +|+++|+||.+|++ +.+..+......++.++|.+++
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHH-HHHCSSSCCTTCBHHHHSEESC
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHH-HHHhcCCCcccCcHHHHcCCCC
Confidence            357999998545799999999999999999999999999999 89999999999998 6666555444678999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  240 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~  240 (346)
                      .++++++++.++++.|.+++++++||+|++ +++|+||..||++
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            999999999999999999999999999965 9999999999975

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.80  E-value=4.4e-19  Score=140.09  Aligned_cols=125  Identities=27%  Similarity=0.363  Sum_probs=109.9

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH-HHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI-LMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl-l~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|.+  ++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|+ + +++..+.. ...++.++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~~-~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY-NLIRDKYT-LETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHH-HHTTTCCC-SSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHH-HHHhhccc-CCcCHHHHhC
Confidence            445678999974  788899999999999999999999999999 7999999999999 7 55443322 2678999999


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCC-----CceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~-----~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +++.++++++++.++++.|.+++     .+++||+|++|+++|+||..|+++++..
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999     9999999999999999999999987554

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.80  E-value=6.3e-20  Score=148.35  Aligned_cols=119  Identities=14%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +...+++++|+++.+++++++++++.++++.|.+++++++||++ + ++++|++|.+|++ +....+   ...++.++|.
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~---~~~~v~~im~  110 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLL-KYMFNP---EQFHLKSILR  110 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGSSCG---GGCCHHHHCB
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHcC---CcccHHHHcC
Confidence            45678999999766899999999999999999999999999999 5 5999999999997 443332   3578999995


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  239 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~  239 (346)
                       ++.++++++++.++++.|.+++.+++||+|++|+++|+||..|++
T Consensus       111 -~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          111 -PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             -CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             -CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence             589999999999999999999999999999999999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.80  E-value=2e-19  Score=152.97  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=104.0

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      ....+++++|.++++++++++|+.+|+++|.+++++++||+| +|+++|+||.+|+.+.                     
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~---------------------   68 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL---------------------   68 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS---------------------
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh---------------------
Confidence            345789999999999999999999999999999999999999 7999999999998542                     


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                                            ....+++++|.+  +++++++++++.++++.|.+++++++||+| +|+++|++|.+|+
T Consensus        69 ----------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Di  124 (213)
T 1vr9_A           69 ----------------------DLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF  124 (213)
T ss_dssp             ----------------------CTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHH
T ss_pred             ----------------------cCCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHH
Confidence                                  112468899985  788999999999999999999999999999 6999999999999


Q ss_pred             HHHHHhcCCCccccccccccccCC-eeecCCCCHHHHHHHhHhCCCceeEEEcCCCc
Q 019128          173 LMRVISQNLPADSTLVEKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  228 (346)
Q Consensus       173 l~~~~~~~~~~~~~~v~~~m~~~~-~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  228 (346)
                      + +.+....     ...+.+.+-. .+.....++.++.+.|.+++.+.++|++.+|.
T Consensus       125 l-~~~~~~~-----~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          125 L-EALIEAL-----AMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             H-HHHHHSC-----C------------------------------------------
T ss_pred             H-HHHHHHh-----cCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            8 4443322     1222332211 11133345999999999999999999876654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.80  E-value=3.2e-19  Score=139.57  Aligned_cols=122  Identities=19%  Similarity=0.203  Sum_probs=100.8

Q ss_pred             CCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhh
Q 019128           14 NLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAA   89 (346)
Q Consensus        14 ~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~   89 (346)
                      ++.+.+|+++|+  .+++++++++++.+|++.|.+++++++||+| + |+++|+||.+|+++....              
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--------------   67 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS--------------   67 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT--------------
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc--------------
Confidence            467899999999  4567899999999999999999999999998 5 899999999999875311              


Q ss_pred             hhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEee
Q 019128           90 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  168 (346)
Q Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit  168 (346)
                                               .....+++++|.   +++++++++++.++++.|.+++.+.+||+| +|+++|++|
T Consensus        68 -------------------------~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt  119 (130)
T 3i8n_A           68 -------------------------GSGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVT  119 (130)
T ss_dssp             -------------------------TTTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEE
T ss_pred             -------------------------CCCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEE
Confidence                                     012345777885   478999999999999999999999999999 799999999


Q ss_pred             HHHHHHHHH
Q 019128          169 SKDILMRVI  177 (346)
Q Consensus       169 ~~dll~~~~  177 (346)
                      ..|+++.+.
T Consensus       120 ~~dil~~l~  128 (130)
T 3i8n_A          120 LEDIFEHLV  128 (130)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999985443

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.80  E-value=2.3e-19  Score=143.94  Aligned_cols=127  Identities=28%  Similarity=0.398  Sum_probs=108.3

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-------------CCcc
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPAD  184 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-------------~~~~  184 (346)
                      .+++++|.+..+++++++++++.++++.|.+++++++||++ +++++|++|.+|++ ++....             ....
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~   83 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL-ALDSGDSTWKTFNAVQKLLSKTN   83 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHT-TCC----CCHHHHHHHTC-----
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHH-HhhcccCcccchHHHHHHHHHhc
Confidence            46899998755799999999999999999999999999999 78999999999996 321100             1112


Q ss_pred             ccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       185 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ..++.++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||..||++++....
T Consensus        84 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A           84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC--
T ss_pred             cccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999999999999999999999999876543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=8.5e-19  Score=143.03  Aligned_cols=131  Identities=17%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             hhcCCCCcccccccccC---CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhh
Q 019128           10 ARELNLEETPVSKVMTR---NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGK   85 (346)
Q Consensus        10 ~~~~~~~~~~v~dim~~---~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~   85 (346)
                      .....+..++|+++|.+   +++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++.+....        
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------   87 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG--------   87 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG--------
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC--------
Confidence            34457788999999995   799999999999999999999999999999 799999999999987643210        


Q ss_pred             hHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEE
Q 019128           86 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRG  165 (346)
Q Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~G  165 (346)
                                                  ......++.++|.+  +++++.+++++.++++.|.+++++++||+++|+++|
T Consensus        88 ----------------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~G  137 (165)
T 3fhm_A           88 ----------------------------AASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAG  137 (165)
T ss_dssp             ----------------------------GGGGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEE
T ss_pred             ----------------------------CccccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEE
Confidence                                        01234568899974  788999999999999999999999999999999999


Q ss_pred             EeeHHHHHHHHHhc
Q 019128          166 ILTSKDILMRVISQ  179 (346)
Q Consensus       166 iit~~dll~~~~~~  179 (346)
                      +||..|++ +.+..
T Consensus       138 iit~~dil-~~~~~  150 (165)
T 3fhm_A          138 IISIGDVV-KARIG  150 (165)
T ss_dssp             EEEHHHHH-HHTTC
T ss_pred             EEEHHHHH-HHHHH
Confidence            99999998 55443

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.79  E-value=1.2e-18  Score=140.77  Aligned_cols=130  Identities=15%  Similarity=0.193  Sum_probs=111.5

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-----Cccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVE  189 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~-----~~~~~~v~  189 (346)
                      +...+++++|.+..+++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ +....+.     .....++.
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v~   86 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM-DAILGLERIEFERLETMKVE   86 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHH-HHSBCSSSBCGGGGGTCBGG
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHH-HHHhcccccchHHhcCCcHH
Confidence            34567999998545788999999999999999999999999999 79999999999997 5543311     11256899


Q ss_pred             cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccC
Q 019128          190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  248 (346)
Q Consensus       190 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~  248 (346)
                      ++|.+++.++++++++.++++.|.++++  +||+|++|+++|+||..|+++++......
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhc
Confidence            9999999999999999999999999987  99999999999999999999987766543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.79  E-value=6.5e-19  Score=145.59  Aligned_cols=129  Identities=21%  Similarity=0.316  Sum_probs=109.8

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-----------------
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----------------  180 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-----------------  180 (346)
                      .+++++|.+..+++++.+++++.+|++.|.+++++++||++ +++++|+||.+|+++.....+                 
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   83 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK   83 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence            35788898655799999999999999999999999999999 899999999999972111000                 


Q ss_pred             ---------CCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128          181 ---------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       181 ---------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~  247 (346)
                               ......+++++|.+++.++++++++.++++.|.+++++++||+|++|+++|+||..||++++.....
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~  159 (180)
T 3sl7_A           84 TFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR  159 (180)
T ss_dssp             SHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhh
Confidence                     0112568999999999999999999999999999999999999999999999999999998766553

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.79  E-value=1.9e-19  Score=141.29  Aligned_cols=120  Identities=17%  Similarity=0.323  Sum_probs=107.0

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      .+++++|.+  +++++++++++.++++.|.+++++++||+| +|+++|++|.+|++.+++..+......++.++|.+++.
T Consensus         8 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (133)
T 1y5h_A            8 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   85 (133)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             cCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence            467888874  688899999999999999999999999997 89999999999997445554443345789999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      ++++++++.++++.|.+++.+++||+|+ |+++|+||..|++++
T Consensus        86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           86 YVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            9999999999999999999999999997 999999999999985

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.79  E-value=2.1e-18  Score=139.50  Aligned_cols=124  Identities=21%  Similarity=0.295  Sum_probs=106.8

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcE-EEEEeCCEEEEEeeHHHHHHHHHhc--------------CCCcc
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQ--------------NLPAD  184 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~-l~V~d~~~~~Giit~~dll~~~~~~--------------~~~~~  184 (346)
                      +++++|.+  +++++++++++.+|++.|.++++++ +||+|+++++|++|.+|++..+...              .....
T Consensus        17 ~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (157)
T 1o50_A           17 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   94 (157)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             cHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHc
Confidence            47788874  7999999999999999999999999 9999944999999999998433210              01223


Q ss_pred             ccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       185 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ..++.++|.+ ++++++++++.++++.|.+++++++||+|++|+++|+||..|+++++...+
T Consensus        95 ~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           95 AKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             SCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             CCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence            5789999988 999999999999999999999999999999999999999999999866543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.79  E-value=5.9e-19  Score=142.13  Aligned_cols=130  Identities=20%  Similarity=0.282  Sum_probs=110.4

Q ss_pred             CcchhHHHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeee-e--CCeEEEEEehHHHHHHHHH
Q 019128            1 MKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIA   75 (346)
Q Consensus         1 ~~d~~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVv-d--~~~~vGivt~~dll~~~~~   75 (346)
                      |++++++++    .+...+|+++|++  +++++++++|+.+|++.|.+++++++||+ +  +|+++|+||.+|+++....
T Consensus         7 e~~~i~~~~----~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~   82 (153)
T 3oco_A            7 DANFMQRAF----EMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARI   82 (153)
T ss_dssp             -CCHHHHHH----HHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHhc----ccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhc
Confidence            345555554    6778999999996  89999999999999999999999999999 5  3899999999999875321


Q ss_pred             HHHHHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEE
Q 019128           76 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA  155 (346)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l  155 (346)
                      .                                        ...+++++|.   +++++++++++.++++.|.+++.+.+
T Consensus        83 ~----------------------------------------~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~l  119 (153)
T 3oco_A           83 D----------------------------------------DKAKISTIMR---DIVSVPENMKVPDVMEEMSAHRVPMA  119 (153)
T ss_dssp             H----------------------------------------TTSBGGGTCB---CCEEEETTSBHHHHHHHHHHTTCSCE
T ss_pred             C----------------------------------------CCCcHHHHhC---CCeEECCCCCHHHHHHHHHHcCCcEE
Confidence            0                                        1356888993   68999999999999999999999999


Q ss_pred             EEEe-CCEEEEEeeHHHHHHHHH
Q 019128          156 VVTV-ENKPRGILTSKDILMRVI  177 (346)
Q Consensus       156 ~V~d-~~~~~Giit~~dll~~~~  177 (346)
                      ||++ +|+++|+||..|+++.+.
T Consensus       120 pVvd~~g~~vGivt~~dil~~l~  142 (153)
T 3oco_A          120 IVIDEYGGTSGIITDKDVYEELF  142 (153)
T ss_dssp             EEECTTSCEEEEECHHHHHHHHH
T ss_pred             EEEeCCCCEEEEeeHHHHHHHHh
Confidence            9999 799999999999995444

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.78  E-value=1.4e-18  Score=141.07  Aligned_cols=126  Identities=19%  Similarity=0.193  Sum_probs=108.1

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-------CCCccccccc
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-------NLPADSTLVE  189 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~-------~~~~~~~~v~  189 (346)
                      ..+++++|.+  +++++++++++.+|++.|.+++++++||+| +|+++|+||.+|++..+...       .......++.
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~   81 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   81 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence            3568899975  788999999999999999999999999999 79999999999998433321       1112357899


Q ss_pred             cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       190 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ++|.+++.++++++++.++++.|.+++.+++||+|+ |+++|+||..||++++...+
T Consensus        82 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           82 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998 99999999999999865543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.78  E-value=1.8e-18  Score=133.57  Aligned_cols=117  Identities=22%  Similarity=0.357  Sum_probs=103.7

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+++|.++++++++++++.+|++.|.+++++++||+| +|+++|+++..|+++....                     
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~---------------------   59 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ---------------------   59 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT---------------------
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh---------------------
Confidence            478999999999999999999999999999999999999 8999999999999775210                     


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  175 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~  175 (346)
                                          ...+++++|.+  ++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ +
T Consensus        60 --------------------~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~-~  116 (122)
T 3kpb_A           60 --------------------NKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-R  116 (122)
T ss_dssp             --------------------TCCBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-H
T ss_pred             --------------------cccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHH-H
Confidence                                12368888874  788999999999999999999999999999 69999999999998 5


Q ss_pred             HHh
Q 019128          176 VIS  178 (346)
Q Consensus       176 ~~~  178 (346)
                      ++.
T Consensus       117 ~l~  119 (122)
T 3kpb_A          117 LFG  119 (122)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.78  E-value=4.4e-18  Score=143.64  Aligned_cols=122  Identities=16%  Similarity=0.237  Sum_probs=109.8

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHc---CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  191 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~---~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~  191 (346)
                      +...+++++|++  ++++++++.++.+|++.|.+.   +++.+||++ +|+++|++|.+|++ ..      ....+++++
T Consensus        51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~~------~~~~~v~~i  121 (205)
T 3kxr_A           51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF-KH------EPHEPLISL  121 (205)
T ss_dssp             SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHT-TS------CTTSBGGGG
T ss_pred             CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHH-hC------CCcchHHHH
Confidence            345689999985  899999999999999999997   789999999 89999999999997 21      125789999


Q ss_pred             cccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          192 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       192 m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      |+++++++++++++.++++.|.+++++.+||||++|+++|+||..|+++.+..+.
T Consensus       122 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          122 LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred             hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999865544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.78  E-value=8.1e-19  Score=137.08  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=102.1

Q ss_pred             Cccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           16 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        16 ~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      .+.+|+++|+  ++++++++++++.+|++.|.+++++++||+| + |+++|+||.+|+++...                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            5789999999  7789999999999999999999999999998 4 89999999999865310                 


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  170 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~  170 (346)
                                              ....+++++|.+   ++++++++++.++++.|.+++.+.+||+| +|+++|++|..
T Consensus        66 ------------------------~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~  118 (129)
T 3jtf_A           66 ------------------------EPALDIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTME  118 (129)
T ss_dssp             ------------------------CTTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHH
T ss_pred             ------------------------cCCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence                                    013468888863   78999999999999999999999999999 69999999999


Q ss_pred             HHHHHHH
Q 019128          171 DILMRVI  177 (346)
Q Consensus       171 dll~~~~  177 (346)
                      |+++.+.
T Consensus       119 Dil~~l~  125 (129)
T 3jtf_A          119 DVLEQIV  125 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9995544

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.78  E-value=2.6e-18  Score=134.75  Aligned_cols=121  Identities=15%  Similarity=0.195  Sum_probs=105.5

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      .+.+|+++|.++++++++++++.+|++.|.+++++++||+|+|+++|+++..|+++.....                   
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   62 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG-------------------   62 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT-------------------
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcC-------------------
Confidence            5789999999999999999999999999999999999999999999999999997642100                   


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  174 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~  174 (346)
                                         .....+++++|.+  ++.++++++++.++++.|.+++.+++||++ +|+++|+||..|++.
T Consensus        63 -------------------~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~  121 (133)
T 2ef7_A           63 -------------------KSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR  121 (133)
T ss_dssp             -------------------CCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             -------------------CCcccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHH
Confidence                               0123568888874  688999999999999999999999999999 899999999999984


Q ss_pred             HH
Q 019128          175 RV  176 (346)
Q Consensus       175 ~~  176 (346)
                      .+
T Consensus       122 ~~  123 (133)
T 2ef7_A          122 AI  123 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.78  E-value=1.6e-18  Score=140.39  Aligned_cols=129  Identities=14%  Similarity=0.176  Sum_probs=111.4

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-----ccccccc
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-----ADSTLVE  189 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~-----~~~~~v~  189 (346)
                      +...+++++|.++.+++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|++ ........     ....++.
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~-~~~~~~~~~~~~~~~~~~v~   89 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQITVE   89 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSBHH
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHH-HHhhhhcccchhhhccCCHH
Confidence            44567899998544789999999999999999999999999999 78999999999997 55543211     2357899


Q ss_pred             cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128          190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       190 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~  247 (346)
                      ++|.+++.++++++++.++++.|.++++  +||+|++|+++|+||..|+++++...+.
T Consensus        90 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~  145 (159)
T 1yav_A           90 EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIR  145 (159)
T ss_dssp             HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             HhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHH
Confidence            9999999999999999999999999987  9999999999999999999998776664

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.77  E-value=2.4e-18  Score=136.72  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=104.3

Q ss_pred             CCccc---cccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-Cccccccccccc
Q 019128          119 PSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEKVMT  193 (346)
Q Consensus       119 ~~v~~---im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~-~~~~~~v~~~m~  193 (346)
                      .++++   +|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+..+. .....++.++|.
T Consensus         8 ~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~v~~~m~   84 (144)
T 2nyc_A            8 IPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGEALM   84 (144)
T ss_dssp             SBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHTC----CCSBHHHHHH
T ss_pred             cchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHH-HHhcccccccCCccHHHHHh
Confidence            45666   665  4788999999999999999999999999999 88999999999998 5444321 123568999997


Q ss_pred             c------CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          194 P------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       194 ~------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +      ++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++..
T Consensus        85 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           85 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             cCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            6      68999999999999999999999999999999999999999999997653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.77  E-value=2.2e-18  Score=133.62  Aligned_cols=121  Identities=20%  Similarity=0.249  Sum_probs=103.7

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      ++|+++|.++++++++++++.+|++.|.+++++.+||+|+|+++|+++..|+++.....                     
T Consensus         1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~---------------------   59 (125)
T 1pbj_A            1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG---------------------   59 (125)
T ss_dssp             -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT---------------------
T ss_pred             CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC---------------------
Confidence            47899999999999999999999999999999999999999999999999997642210                     


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  177 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~  177 (346)
                                      ......++.++|.+  ++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +.+
T Consensus        60 ----------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~-~~l  120 (125)
T 1pbj_A           60 ----------------DDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL-RAK  120 (125)
T ss_dssp             ----------------CCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHH
T ss_pred             ----------------CcccccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHH-HHH
Confidence                            00123457788874  78999999999999999999999999999999999999999998 444


Q ss_pred             h
Q 019128          178 S  178 (346)
Q Consensus       178 ~  178 (346)
                      .
T Consensus       121 ~  121 (125)
T 1pbj_A          121 M  121 (125)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.77  E-value=3.3e-19  Score=138.91  Aligned_cols=117  Identities=17%  Similarity=0.184  Sum_probs=100.4

Q ss_pred             cccccccccCC--CeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           17 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        17 ~~~v~dim~~~--~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      +.+|+++|++.  ++++++++++.+|++.|.+++++++||+| + |+++|+||.+|+++.+.                  
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~------------------   63 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR------------------   63 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS------------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh------------------
Confidence            57899999954  99999999999999999999999999999 5 79999999999875311                  


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                                           ......+++++|.+   +.++++++++.++++.|.+++.+.+||+| +|+++|+||..|
T Consensus        64 ---------------------~~~~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d  119 (127)
T 3nqr_A           64 ---------------------SDAEAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED  119 (127)
T ss_dssp             ---------------------TTCCCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ---------------------ccCCCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                 00123467888853   67899999999999999999999999999 899999999999


Q ss_pred             HHHH
Q 019128          172 ILMR  175 (346)
Q Consensus       172 ll~~  175 (346)
                      +++.
T Consensus       120 ll~~  123 (127)
T 3nqr_A          120 ILEL  123 (127)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9843

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.77  E-value=3.3e-18  Score=140.61  Aligned_cols=127  Identities=17%  Similarity=0.221  Sum_probs=106.8

Q ss_pred             HHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhh
Q 019128            8 VIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEK   83 (346)
Q Consensus         8 ~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~   83 (346)
                      ++.+...+...+|+++|+  ++++++++++++.+|++.|.+++++++||+| + |+++|+|+.+|+++.....       
T Consensus        26 ~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~-------   98 (173)
T 3ocm_A           26 MVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE-------   98 (173)
T ss_dssp             HHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH-------
T ss_pred             HHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC-------
Confidence            344444788999999997  4689999999999999999999999999998 5 7999999999998753210       


Q ss_pred             hhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCE
Q 019128           84 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  162 (346)
Q Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~  162 (346)
                                                       ...++. +|.   +++++++++++.++++.|.+++.+.+||+| +|+
T Consensus        99 ---------------------------------~~~~v~-~~~---~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~  141 (173)
T 3ocm_A           99 ---------------------------------GRVRRN-RLR---DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGA  141 (173)
T ss_dssp             ---------------------------------SSCCGG-GSB---CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCC
T ss_pred             ---------------------------------CcchhH-hcC---CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCC
Confidence                                             123456 443   588999999999999999999999999998 799


Q ss_pred             EEEEeeHHHHHHHHHh
Q 019128          163 PRGILTSKDILMRVIS  178 (346)
Q Consensus       163 ~~Giit~~dll~~~~~  178 (346)
                      ++|+||..|++..+..
T Consensus       142 lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          142 IEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             EEEEECHHHHHHHHHC
T ss_pred             EEEEEeHHHHHHHHhC
Confidence            9999999999955543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.77  E-value=1e-18  Score=136.34  Aligned_cols=122  Identities=11%  Similarity=0.188  Sum_probs=105.4

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      ...+++++|.+++.++++++++.+|++.|.+++++++||+|+|+++|+||.+|+++....                    
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------   62 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG--------------------   62 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS--------------------
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh--------------------
Confidence            468999999999999999999999999999999999999999999999999998753100                    


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  174 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~  174 (346)
                                        ......+++++|.+  ++.++.+++++.++++.|.+++.+++||+| +|+++|++|..|++ 
T Consensus        63 ------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll-  121 (128)
T 3gby_A           63 ------------------WPTVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRIL-  121 (128)
T ss_dssp             ------------------SCCTTCBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHH-
T ss_pred             ------------------CCcccCcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHH-
Confidence                              00012458889974  788999999999999999999999999998 89999999999998 


Q ss_pred             HHHh
Q 019128          175 RVIS  178 (346)
Q Consensus       175 ~~~~  178 (346)
                      +.+.
T Consensus       122 ~~l~  125 (128)
T 3gby_A          122 GFLA  125 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.77  E-value=2.8e-18  Score=142.51  Aligned_cols=122  Identities=24%  Similarity=0.282  Sum_probs=107.8

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      .+++++|.+  +++++++++++.+|+++|.+++++++||++ +|+++|++|.+|++..+..........++.++|.+++.
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~   86 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   86 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             cCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCc
Confidence            578999974  789999999999999999999999999998 79999999999998333322222336789999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..||++++
T Consensus        87 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           87 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            999999999999999999999999999989999999999999753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.77  E-value=2.3e-18  Score=139.06  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=102.9

Q ss_pred             Cccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           16 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        16 ~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      ...+++++|+  .+++++++++|+.+|+++|.+++++++||+| +|+++|++|.+|+++++....               
T Consensus        13 l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~---------------   77 (156)
T 3k6e_A           13 LLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHD---------------   77 (156)
T ss_dssp             HHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHT---------------
T ss_pred             hhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcc---------------
Confidence            3458899998  5799999999999999999999999999998 699999999999987643210               


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                                        .........++.++|.+  ++.++++++++.++++.|.+++  .+||+| +|+++|+||.+|
T Consensus        78 ------------------~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~D  135 (156)
T 3k6e_A           78 ------------------LSQEIMADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKS  135 (156)
T ss_dssp             ------------------CCHHHHTTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHH
T ss_pred             ------------------cccccccccCHHHhhcC--CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHH
Confidence                              00112345678999974  7899999999999999998776  499998 899999999999


Q ss_pred             HHHHH
Q 019128          172 ILMRV  176 (346)
Q Consensus       172 ll~~~  176 (346)
                      +++.+
T Consensus       136 il~~~  140 (156)
T 3k6e_A          136 ILKAV  140 (156)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99444

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.76  E-value=6.1e-18  Score=137.19  Aligned_cols=128  Identities=20%  Similarity=0.300  Sum_probs=106.1

Q ss_pred             CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      ..++|+++|+++++++++++|+.+|++.|.+++++++||+| +|+++|+||..|+++.........              
T Consensus         3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~--------------   68 (160)
T 2o16_A            3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS--------------   68 (160)
T ss_dssp             CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             CcCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhccc--------------
Confidence            45789999999999999999999999999999999999999 799999999999987643211000              


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM  174 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~  174 (346)
                                    . .-.......++.++|.+  +++++++++++.++++.|.+++.+++||+++|+++|+||..|++.
T Consensus        69 --------------~-~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~  131 (160)
T 2o16_A           69 --------------A-QGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVT  131 (160)
T ss_dssp             ----------------------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHH
T ss_pred             --------------c-cccchhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHH
Confidence                          0 00111234568888874  789999999999999999999999999999999999999999984

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.76  E-value=4.3e-18  Score=137.56  Aligned_cols=138  Identities=15%  Similarity=0.220  Sum_probs=106.6

Q ss_pred             cccccccc------CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           18 TPVSKVMT------RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        18 ~~v~dim~------~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      .+|+|+|.      ++++++++++++.+|++.|.+++++++||.++|+++|+||..|+++.+...               
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~---------------   71 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQ---------------   71 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGG---------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhc---------------
Confidence            57999999      556999999999999999999999999997789999999999998753210               


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD  171 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~d  171 (346)
                             +              ......+++++|.+  ++.++.+++++.++++.|.+++++++||+|+|+++|+||.+|
T Consensus        72 -------~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d  128 (157)
T 4fry_A           72 -------E--------------RSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD  128 (157)
T ss_dssp             -------T--------------CCSSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred             -------c--------------CCccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence                   0              00124567888874  788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccccccc
Q 019128          172 ILMRVISQNLPADSTLVEKVMTP  194 (346)
Q Consensus       172 ll~~~~~~~~~~~~~~v~~~m~~  194 (346)
                      ++ +.+..........+++++..
T Consensus       129 il-~~l~~~~~~~~~~~~~~i~~  150 (157)
T 4fry_A          129 LV-KSVIADQQFTISQLEHYIHG  150 (157)
T ss_dssp             HH-HHHHTTCCCCCC--------
T ss_pred             HH-HHHHHHHHhhHHHHHhhccC
Confidence            99 54444333323455555543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=4.3e-18  Score=133.18  Aligned_cols=121  Identities=9%  Similarity=0.131  Sum_probs=99.3

Q ss_pred             ccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           17 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        17 ~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      .++|+++|+  ++++++++++|+.+|++.|.+++++++||++  +|+++|++|.+|+++.....                
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~----------------   64 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----------------   64 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS----------------
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc----------------
Confidence            368999997  4689999999999999999999999999996  38999999999998753110                


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                             ..              ....++.++|.   +++++++++++.++++.|.+++.+.+||+| +|+++|++|.+|
T Consensus        65 -------~~--------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (130)
T 3hf7_A           65 -------KE--------------FTKEIMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVED  120 (130)
T ss_dssp             -------SC--------------CCHHHHHHHSB---CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHH
T ss_pred             -------Cc--------------cchhhHHHhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHH
Confidence                   00              00012455563   478999999999999999999999999998 799999999999


Q ss_pred             HHHHHH
Q 019128          172 ILMRVI  177 (346)
Q Consensus       172 ll~~~~  177 (346)
                      +++.+.
T Consensus       121 il~~l~  126 (130)
T 3hf7_A          121 ILEEIV  126 (130)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            995443

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.76  E-value=3e-18  Score=144.63  Aligned_cols=123  Identities=11%  Similarity=0.053  Sum_probs=107.7

Q ss_pred             HhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHhC---Ccceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhh
Q 019128            9 IARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG---KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG   84 (346)
Q Consensus         9 ~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~---~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~   84 (346)
                      +.....+.+.+|+++|+++++++++++|+.+|++.|.++   +++.+||+| +|+++|+||.+|++..            
T Consensus        45 i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~------------  112 (205)
T 3kxr_A           45 FELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH------------  112 (205)
T ss_dssp             HHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS------------
T ss_pred             HHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC------------
Confidence            333447788999999999999999999999999999987   899999999 7999999999998542            


Q ss_pred             hhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEE
Q 019128           85 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  163 (346)
Q Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~  163 (346)
                                                     ....+++++|.+  +++++++++++.++++.|.+++.+.+||+| +|++
T Consensus       113 -------------------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~l  159 (205)
T 3kxr_A          113 -------------------------------EPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGEL  159 (205)
T ss_dssp             -------------------------------CTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBE
T ss_pred             -------------------------------CCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeE
Confidence                                           123468899974  788999999999999999999999999999 7999


Q ss_pred             EEEeeHHHHHHHH
Q 019128          164 RGILTSKDILMRV  176 (346)
Q Consensus       164 ~Giit~~dll~~~  176 (346)
                      +|+||..|++..+
T Consensus       160 vGiIT~~Dil~~i  172 (205)
T 3kxr_A          160 IGRVTLRAATALV  172 (205)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHH
Confidence            9999999998433

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.76  E-value=8.9e-18  Score=136.07  Aligned_cols=125  Identities=15%  Similarity=0.242  Sum_probs=106.5

Q ss_pred             CCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           14 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        14 ~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      .+..++|+++|++ ++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++.....                
T Consensus        13 ~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------   75 (159)
T 3fv6_A           13 KLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ----------------   75 (159)
T ss_dssp             HHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC----------------
T ss_pred             HHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc----------------
Confidence            3567899999997 56999999999999999999999999999 89999999999998753100                


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC---EEEEEee
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN---KPRGILT  168 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~---~~~Giit  168 (346)
                                           ......++.++|.+..+++++.+++++.++++.|.+++++++||++ +|   +++|+||
T Consensus        76 ---------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit  134 (159)
T 3fv6_A           76 ---------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVT  134 (159)
T ss_dssp             ---------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEE
T ss_pred             ---------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEE
Confidence                                 0123456889998544788999999999999999999999999999 66   9999999


Q ss_pred             HHHHHHHH
Q 019128          169 SKDILMRV  176 (346)
Q Consensus       169 ~~dll~~~  176 (346)
                      .+|+++.+
T Consensus       135 ~~dil~~l  142 (159)
T 3fv6_A          135 KTNMTKIL  142 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998433

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.76  E-value=5.9e-18  Score=140.47  Aligned_cols=131  Identities=11%  Similarity=0.163  Sum_probs=110.6

Q ss_pred             HhCCCCccccccCCCc--eeEe--CCCCcHHHHHHHHHHcCCcEEEEE--e-CCEEEEEeeHHHHHHHHHhcC-------
Q 019128          115 RMFRPSLSTIIPEKSK--VVTI--SPTDTVLMATKKMLELRLSSAVVT--V-ENKPRGILTSKDILMRVISQN-------  180 (346)
Q Consensus       115 ~~~~~~v~~im~~~~~--~~~v--~~~~~l~~~~~~m~~~~~~~l~V~--d-~~~~~Giit~~dll~~~~~~~-------  180 (346)
                      .+...+++++|.+..+  ++++  .+++++.+|++.|.+++++++||+  + +|+++|+||.+|++..+....       
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            3456789999986322  7778  999999999999999999999999  6 789999999999984433210       


Q ss_pred             ----------------CCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          181 ----------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       181 ----------------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                                      ......++.++|.+++.++++++++.++++.|.+++.+++||+| +|+++|+||..||++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                            01235689999999999999999999999999999999999999 8999999999999998766


Q ss_pred             Hc
Q 019128          245 TV  246 (346)
Q Consensus       245 ~i  246 (346)
                      ..
T Consensus       166 ~~  167 (185)
T 2j9l_A          166 MA  167 (185)
T ss_dssp             HC
T ss_pred             hh
Confidence            55

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.75  E-value=5.8e-19  Score=142.67  Aligned_cols=123  Identities=17%  Similarity=0.230  Sum_probs=105.0

Q ss_pred             HHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhh
Q 019128            8 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEK   83 (346)
Q Consensus         8 ~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~   83 (346)
                      ++.+...+...+|+++|++  +++++++++|+.+|++.|.+++++++||+| + ++++|+||.+|+++....        
T Consensus        28 ~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~--------   99 (156)
T 3oi8_A           28 RLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN--------   99 (156)
T ss_dssp             HHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC--------
T ss_pred             HHHHHhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc--------
Confidence            3444447889999999996  789999999999999999999999999998 5 599999999998753100        


Q ss_pred             hhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCE
Q 019128           84 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  162 (346)
Q Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~  162 (346)
                                                    .  ...+++++|.+   ++++++++++.++++.|.+++.+.+||+| +|+
T Consensus       100 ------------------------------~--~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~  144 (156)
T 3oi8_A          100 ------------------------------P--EQFHLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGG  144 (156)
T ss_dssp             ------------------------------G--GGCCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSS
T ss_pred             ------------------------------C--CcccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCC
Confidence                                          0  13457788863   78999999999999999999999999998 799


Q ss_pred             EEEEeeHHHHH
Q 019128          163 PRGILTSKDIL  173 (346)
Q Consensus       163 ~~Giit~~dll  173 (346)
                      ++|+||..|++
T Consensus       145 ~~Givt~~Dil  155 (156)
T 3oi8_A          145 TSGLVTFEDII  155 (156)
T ss_dssp             EEEEEEHHHHC
T ss_pred             EEEEEEHHHhc
Confidence            99999999985

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.75  E-value=1.2e-17  Score=131.90  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=107.4

Q ss_pred             CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128           13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV   91 (346)
Q Consensus        13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~   91 (346)
                      ..+...+|+++|+++++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++..+..               
T Consensus         2 ~~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~---------------   66 (138)
T 2yzi_A            2 VMDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP---------------   66 (138)
T ss_dssp             -CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT---------------
T ss_pred             cchhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc---------------
Confidence            35778999999999999999999999999999999999999999 89999999999987431100               


Q ss_pred             hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128           92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  170 (346)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~  170 (346)
                                            ......++.++|.+  ++.++++++++.++++.|.+++.+++ |++ +|+++|++|..
T Consensus        67 ----------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~  121 (138)
T 2yzi_A           67 ----------------------GLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLS  121 (138)
T ss_dssp             ----------------------CCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHH
T ss_pred             ----------------------CCcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHH
Confidence                                  00123568889974  78899999999999999999999999 999 99999999999


Q ss_pred             HHHHHHHhc
Q 019128          171 DILMRVISQ  179 (346)
Q Consensus       171 dll~~~~~~  179 (346)
                      |++ +.+..
T Consensus       122 dil-~~~~~  129 (138)
T 2yzi_A          122 DLL-EASRR  129 (138)
T ss_dssp             HHH-HHHHC
T ss_pred             HHH-HHHHH
Confidence            998 55443

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.75  E-value=8.4e-18  Score=132.23  Aligned_cols=123  Identities=15%  Similarity=0.201  Sum_probs=104.8

Q ss_pred             cc-ccccccc---CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           17 ET-PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        17 ~~-~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      ++ +|+++|+   ++++++++++|+.+|++.|.+++++++||+|+|+++|++|..|+++.+...                
T Consensus         4 ~m~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~----------------   67 (135)
T 2rc3_A            4 HMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL----------------   67 (135)
T ss_dssp             -CCBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS----------------
T ss_pred             cceeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc----------------
Confidence            44 8999999   899999999999999999999999999999999999999999997532100                


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI  172 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dl  172 (346)
                            +              ......++.++|.+  ++.++++++++.++++.|.+++.+++||+++|+++|+||..|+
T Consensus        68 ------~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dl  125 (135)
T 2rc3_A           68 ------D--------------KPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDL  125 (135)
T ss_dssp             ------S--------------SCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHH
T ss_pred             ------C--------------CCcccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHH
Confidence                  0              00123568889975  7889999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 019128          173 LMRVIS  178 (346)
Q Consensus       173 l~~~~~  178 (346)
                      + +.+.
T Consensus       126 l-~~~~  130 (135)
T 2rc3_A          126 V-KDAI  130 (135)
T ss_dssp             H-HHHH
T ss_pred             H-HHHH
Confidence            8 4443

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.75  E-value=1.5e-18  Score=136.90  Aligned_cols=117  Identities=13%  Similarity=0.160  Sum_probs=101.1

Q ss_pred             ccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           17 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        17 ~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      +.+|+++|+  ++++++++++|+.+|++.|.+++++++||+| + |+++|+||.+|+++.+..                 
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK-----------------   64 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence            578999999  6789999999999999999999999999998 5 799999999998764210                 


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                                           ......+++++|.+   ++++++++++.++++.|.+++.+.+||+| +|+++|+||.+|
T Consensus        65 ---------------------~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (136)
T 3lfr_A           65 ---------------------ADGDSDDVKKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED  120 (136)
T ss_dssp             ---------------------SSGGGCCGGGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ---------------------ccCCCcCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                 00123468899963   88999999999999999999999999998 799999999999


Q ss_pred             HHH
Q 019128          172 ILM  174 (346)
Q Consensus       172 ll~  174 (346)
                      +++
T Consensus       121 il~  123 (136)
T 3lfr_A          121 VLE  123 (136)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            983

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.75  E-value=1.8e-17  Score=131.44  Aligned_cols=116  Identities=15%  Similarity=0.207  Sum_probs=101.6

Q ss_pred             cccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CC--eEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NG--EVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        17 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~--~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      .++|+++|+++++++++++|+.+|++.|.+++++++||+| +|  +++|+||..|+++.+...                 
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~-----------------   66 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-----------------   66 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------------
Confidence            4789999999999999999999999999999999999999 56  999999999997653110                 


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                                           .....++.++|.+  ++++++++ ++.++++.|.+++.+++||++ +|+++|++|..|+
T Consensus        67 ---------------------~~~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl  122 (141)
T 2rih_A           67 ---------------------LDLDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL  122 (141)
T ss_dssp             ---------------------CCTTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             ---------------------CCCCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence                                 0123568889874  78999999 999999999999999999999 8999999999999


Q ss_pred             H
Q 019128          173 L  173 (346)
Q Consensus       173 l  173 (346)
                      +
T Consensus       123 l  123 (141)
T 2rih_A          123 C  123 (141)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.75  E-value=1.4e-17  Score=134.61  Aligned_cols=141  Identities=16%  Similarity=0.215  Sum_probs=109.4

Q ss_pred             hcCCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcce-eeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhh
Q 019128           11 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAA   89 (346)
Q Consensus        11 ~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~-lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~   89 (346)
                      .+..+...+|+++|+++++++++++|+.+|++.|.+++++. +||+|+++++|+||..|+++.....+    .      .
T Consensus         9 ~~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~----~------~   78 (157)
T 1o50_A            9 HHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF----F------G   78 (157)
T ss_dssp             -CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH----H------C
T ss_pred             hhhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH----H------h
Confidence            34567889999999999999999999999999999999999 99999449999999999987643221    0      0


Q ss_pred             hhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEee
Q 019128           90 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  168 (346)
Q Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit  168 (346)
                      ..           .....+.. ........++.++|.+   ++++++++++.++++.|.+++++++||+| +|+++|+||
T Consensus        79 ~~-----------~~~~~~~~-~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit  143 (157)
T 1o50_A           79 FI-----------PKEELIRS-SMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN  143 (157)
T ss_dssp             CC-----------C--------CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEE
T ss_pred             hh-----------ccHHHHHH-HHHHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEE
Confidence            00           00000000 0001234568888873   88999999999999999999999999999 899999999


Q ss_pred             HHHHHHHH
Q 019128          169 SKDILMRV  176 (346)
Q Consensus       169 ~~dll~~~  176 (346)
                      ..|+++.+
T Consensus       144 ~~dll~~l  151 (157)
T 1o50_A          144 SLEILLAL  151 (157)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998433

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.74  E-value=1.6e-17  Score=133.05  Aligned_cols=117  Identities=14%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             ccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           18 TPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        18 ~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      ++|+++|.+  +++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++.+...                  
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------------------   89 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG------------------   89 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS------------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC------------------
Confidence            599999998  999999999999999999999999999999 79999999999998652100                  


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                                         ......++.++|.+  +++++++++++.++++.|.+++++.+||+++++++|+||..|++
T Consensus        90 -------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil  147 (149)
T 3k2v_A           90 -------------------VDMRDASIADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL  147 (149)
T ss_dssp             -------------------SCCTTCBHHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             -------------------CCcccCcHHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence                               00123557788874  68899999999999999999999999999977999999999986

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=134.90  Aligned_cols=132  Identities=17%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhh
Q 019128           13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAA   89 (346)
Q Consensus        13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~   89 (346)
                      ......+|+++|+++++++++++++.+|++.|.+++++++||+|   +|+++|+||..|+++.........         
T Consensus         8 ~~~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~---------   78 (164)
T 2pfi_A            8 IGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR---------   78 (164)
T ss_dssp             --CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------
T ss_pred             ccccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc---------
Confidence            35678999999999999999999999999999999999999998   489999999999987532110000         


Q ss_pred             hhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCC----CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEE
Q 019128           90 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRG  165 (346)
Q Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~G  165 (346)
                                              ......++.++|.+.    ..++++++++++.++++.|.+++.+++||+++|+++|
T Consensus        79 ------------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~G  134 (164)
T 2pfi_A           79 ------------------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVG  134 (164)
T ss_dssp             --------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEE
T ss_pred             ------------------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEE
Confidence                                    001123355555431    1168899999999999999999999999999999999


Q ss_pred             EeeHHHHHHHHH
Q 019128          166 ILTSKDILMRVI  177 (346)
Q Consensus       166 iit~~dll~~~~  177 (346)
                      +||.+|++..+.
T Consensus       135 iit~~dil~~~~  146 (164)
T 2pfi_A          135 CVSWVEMKKAIS  146 (164)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999984433

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.74  E-value=7.8e-18  Score=132.85  Aligned_cols=121  Identities=26%  Similarity=0.355  Sum_probs=103.7

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHH-HHHHHHHHHHHHhhhhhHhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKC-LYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dl-l~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      +...+++++|+++++++++++++.+|++.|.+++++++||+| +|+++|+++..|+ ++.+..                 
T Consensus         5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   67 (138)
T 2p9m_A            5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD-----------------   67 (138)
T ss_dssp             CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-----------------
T ss_pred             cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-----------------
Confidence            567899999999999999999999999999999999999999 7999999999998 654210                 


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEE
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGI  166 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Gi  166 (346)
                                           ......+++++|.+  ++.++++++++.++++.|.+++     .+++||++ +|+++|+
T Consensus        68 ---------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Gi  124 (138)
T 2p9m_A           68 ---------------------KYTLETTIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGI  124 (138)
T ss_dssp             ---------------------CCCSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEE
T ss_pred             ---------------------cccCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEE
Confidence                                 00123457778874  6889999999999999999999     99999999 8999999


Q ss_pred             eeHHHHHHH
Q 019128          167 LTSKDILMR  175 (346)
Q Consensus       167 it~~dll~~  175 (346)
                      +|..|+++.
T Consensus       125 it~~dll~~  133 (138)
T 2p9m_A          125 ISDGDIIRT  133 (138)
T ss_dssp             EEHHHHHHH
T ss_pred             EEHHHHHHH
Confidence            999999833

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=133.94  Aligned_cols=126  Identities=10%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCC----ccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----ADSTLVE  189 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~~~----~~~~~v~  189 (346)
                      ...+++++|.+  +++++++++++.+|++.|.+++++++||+|   +|+++|++|.+|++ +....+..    ....++.
T Consensus        11 ~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           11 HHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV-QALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHC-------CCCCBHH
T ss_pred             cCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHH-HHHHhhccccCCcccchhh
Confidence            34568899985  788899999999999999999999999998   48999999999998 54433221    1245788


Q ss_pred             cccccC------CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          190 KVMTPN------PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       190 ~~m~~~------~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ++|.++      +.++++++++.++++.|.+++.+++||+| +|+++|+||..||++++....
T Consensus        88 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           88 DILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             HHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             hhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence            999776      79999999999999999999999999999 799999999999999876655

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.73  E-value=1.9e-17  Score=132.65  Aligned_cols=134  Identities=19%  Similarity=0.231  Sum_probs=105.0

Q ss_pred             CcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           16 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        16 ~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      ..++|+++|++  +++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++.......              
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~--------------   68 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDST--------------   68 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----C--------------
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCc--------------
Confidence            46899999998  899999999999999999999999999999 6899999999999753210000              


Q ss_pred             hhhhccCCCCCChhhHH--HHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeH
Q 019128           93 GVEKHWGTSISGPNTFI--ETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  169 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~  169 (346)
                                  ...+.  ..........++.++|.+  +++++++++++.++++.|.+++++++||++ +|+++|+||.
T Consensus        69 ------------~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~  134 (152)
T 4gqw_A           69 ------------WKTFNAVQKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITR  134 (152)
T ss_dssp             ------------CHHHHHHHTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEH
T ss_pred             ------------ccchHHHHHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEH
Confidence                        00000  000111234568888985  678899999999999999999999999999 8999999999


Q ss_pred             HHHHHHHH
Q 019128          170 KDILMRVI  177 (346)
Q Consensus       170 ~dll~~~~  177 (346)
                      +|+++.+.
T Consensus       135 ~dil~~~~  142 (152)
T 4gqw_A          135 GNVVRAAL  142 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99994433

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.73  E-value=1.3e-17  Score=133.56  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=104.8

Q ss_pred             CCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           14 NLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        14 ~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      .+..++|+++|+  .+++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++.+...              
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~--------------   76 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL--------------   76 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS--------------
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh--------------
Confidence            456789999999  5699999999999999999999999999998 89999999999998753100              


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeH
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  169 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~  169 (346)
                                ....        .......++.++|.+  ++.++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        77 ----------~~~~--------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~  134 (150)
T 3lqn_A           77 ----------ERIE--------FERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTR  134 (150)
T ss_dssp             ----------SSBC--------GGGGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEH
T ss_pred             ----------cccc--------hhHHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEH
Confidence                      0000        011234568899974  78999999999999999999886  99999 8999999999


Q ss_pred             HHHHHHH
Q 019128          170 KDILMRV  176 (346)
Q Consensus       170 ~dll~~~  176 (346)
                      .|+++.+
T Consensus       135 ~dil~~l  141 (150)
T 3lqn_A          135 RAILKLL  141 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998433

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.72  E-value=6e-17  Score=130.70  Aligned_cols=130  Identities=13%  Similarity=0.243  Sum_probs=104.2

Q ss_pred             CCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhh
Q 019128           13 LNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAA   89 (346)
Q Consensus        13 ~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~   89 (346)
                      ..+...+|+++|.+  +++++++++|+.+|++.|.+++++++||+| +|+++|+||..|+++.....             
T Consensus         6 ~~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~-------------   72 (157)
T 2emq_A            6 NEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGL-------------   72 (157)
T ss_dssp             ----CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCS-------------
T ss_pred             hhHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcc-------------
Confidence            45678999999996  899999999999999999999999999999 79999999999997642100             


Q ss_pred             hhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEee
Q 019128           90 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  168 (346)
Q Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit  168 (346)
                                ... .        .......++.++|.+  +++++++++++.++++.|.++++  +||++ +|+++|+||
T Consensus        73 ----------~~~-~--------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit  129 (157)
T 2emq_A           73 ----------ERI-E--------FERLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFT  129 (157)
T ss_dssp             ----------SSB-C--------GGGGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEE
T ss_pred             ----------ccc-c--------hHHhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEE
Confidence                      000 0        011234568899975  78899999999999999999987  99999 799999999


Q ss_pred             HHHHHHHHHhc
Q 019128          169 SKDILMRVISQ  179 (346)
Q Consensus       169 ~~dll~~~~~~  179 (346)
                      ..|++ +.+..
T Consensus       130 ~~dil-~~~~~  139 (157)
T 2emq_A          130 RREVL-KQLNK  139 (157)
T ss_dssp             HHHHH-HHHHH
T ss_pred             HHHHH-HHHHH
Confidence            99998 44443

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.72  E-value=2.6e-16  Score=136.26  Aligned_cols=161  Identities=16%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             CCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC---CeEEEEEehHHHHHHHHHHHHHHHhh-------
Q 019128           14 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEK-------   83 (346)
Q Consensus        14 ~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~~~vGivt~~dll~~~~~~~~~~~~~-------   83 (346)
                      ....++|+|+|+++++++.+++++.+|.++|.+++++++||+|+   ++++|+|+..||++++..........       
T Consensus         9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A            9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            56788999999999999999999999999999999999999983   58999999999998754432111000       


Q ss_pred             ----------------hhhHhhhhhhh------hh---------cc-----C----------C----------C------
Q 019128           84 ----------------GKAIAAAVEGV------EK---------HW-----G----------T----------S------  101 (346)
Q Consensus        84 ----------------~~~~~~~~~~~------~~---------~~-----g----------~----------~------  101 (346)
                                      ...........      +.         ..     +          .          .      
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                            00000000000      00         00     0          0          0      


Q ss_pred             -CCChhhHHHHHHHHhCCCCc--c-ccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHH
Q 019128          102 -ISGPNTFIETLRERMFRPSL--S-TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  177 (346)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~v--~-~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~  177 (346)
                       ....... ....+.....++  . .+|.+  .++++.+++++.++..+|...|++++||++.|+++||||.+|++ +++
T Consensus       169 ~~i~~~~~-~~~~~~~l~~~Vdl~~~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~-kai  244 (250)
T 2d4z_A          169 EMLTLEEI-YRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ-AAI  244 (250)
T ss_dssp             SCCBHHHH-HHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHH
T ss_pred             cccChhhh-hhHHHHhcCceeccccccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHH-HHH
Confidence             0000000 011111123334  3 36775  88999999999999999999999999999999999999999998 655


Q ss_pred             h
Q 019128          178 S  178 (346)
Q Consensus       178 ~  178 (346)
                      .
T Consensus       245 ~  245 (250)
T 2d4z_A          245 E  245 (250)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.72  E-value=5.5e-18  Score=132.90  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      +.-.+|+++|.++++++++++|+.+|++.|.+++++++||+| +|+++|++|..|+++..+..                 
T Consensus         5 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   67 (133)
T 1y5h_A            5 FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-----------------   67 (133)
T ss_dssp             ---CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-----------------
T ss_pred             hhhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-----------------
Confidence            344699999999999999999999999999999999999997 89999999999987421100                 


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                           +.              .....+++++|.+  +++++++++++.++++.|.+++.+++||+++|+++|++|.+|++
T Consensus        68 -----~~--------------~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil  126 (133)
T 1y5h_A           68 -----GL--------------DPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA  126 (133)
T ss_dssp             -----TC--------------CTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             -----CC--------------CccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH
Confidence                 00              0123457777764  78899999999999999999999999999999999999999998

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.72  E-value=7.2e-17  Score=133.85  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=107.9

Q ss_pred             CCCcccccccccCC----Ceee--cCCccHHHHHHHHHhCCcceeeee--e-CCeEEEEEehHHHHHHHHHHHHHHHhhh
Q 019128           14 NLEETPVSKVMTRN----PTFV--LSDTLAVEALQKMVQGKFRHLPVV--E-NGEVIALLDIAKCLYDAIARMERAAEKG   84 (346)
Q Consensus        14 ~~~~~~v~dim~~~----~i~v--~~~~~l~ea~~~m~~~~~~~lpVv--d-~~~~vGivt~~dll~~~~~~~~~~~~~~   84 (346)
                      -+...+|+++|+++    ++++  ++++++.+|++.|.+++++++||+  | +|+++|+||..|+++.......    ..
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~----~~   82 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARK----KQ   82 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHT----SC
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcc----cC
Confidence            35678999999987    7888  999999999999999999999999  6 7999999999999876432210    00


Q ss_pred             hhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEE
Q 019128           85 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR  164 (346)
Q Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~  164 (346)
                      ...   .............. .     ........++.++|.+  +++++++++++.++++.|.+++.+++||+++|+++
T Consensus        83 ~~~---~~~~~~~~~~~~~~-~-----~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~v  151 (185)
T 2j9l_A           83 DGV---VSTSIIYFTEHSPP-L-----PPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLL  151 (185)
T ss_dssp             SCC---CTTCEEECSSSCCC-C-----CTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEE
T ss_pred             CCc---cccceeecccCCcc-c-----ccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEE
Confidence            000   00000000000000 0     0001223468889974  68899999999999999999999999999999999


Q ss_pred             EEeeHHHHHHHHH
Q 019128          165 GILTSKDILMRVI  177 (346)
Q Consensus       165 Giit~~dll~~~~  177 (346)
                      |+||..|+++.+.
T Consensus       152 Giit~~dll~~l~  164 (185)
T 2j9l_A          152 GIITKKDVLKHIA  164 (185)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999984443

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.71  E-value=5.8e-17  Score=128.67  Aligned_cols=127  Identities=18%  Similarity=0.272  Sum_probs=102.1

Q ss_pred             CCcccccc---cccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           15 LEETPVSK---VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        15 ~~~~~v~d---im~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      +.+.++++   +|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+++......             
T Consensus         5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------   71 (144)
T 2nyc_A            5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI-------------   71 (144)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--------------
T ss_pred             hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc-------------
Confidence            44567888   8889999999999999999999999999999999 799999999999976532100             


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCC----CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEE
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  165 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~G  165 (346)
                                             ......++.++|.+.    .++.++++++++.++++.|.+++.+++||++ +|+++|
T Consensus        72 -----------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~G  128 (144)
T 2nyc_A           72 -----------------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG  128 (144)
T ss_dssp             --------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             -----------------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEE
Confidence                                   001133466666532    1588999999999999999999999999999 799999


Q ss_pred             EeeHHHHHHHHH
Q 019128          166 ILTSKDILMRVI  177 (346)
Q Consensus       166 iit~~dll~~~~  177 (346)
                      +||..|+++.+.
T Consensus       129 iit~~dil~~l~  140 (144)
T 2nyc_A          129 VLTLSDILKYIL  140 (144)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999984443

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.71  E-value=1.1e-16  Score=136.09  Aligned_cols=117  Identities=17%  Similarity=0.205  Sum_probs=105.7

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      .++.++|.+  +++++.+++++.+|+++|.+++++++||+| +++++|++|.+|+. +..      ...+++++|+++++
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~-~~~------~~~~v~~im~~~~~   83 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-DLD------LDSSVFNKVSLPDF   83 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-TSC------TTSBSGGGCBCTTC
T ss_pred             cCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHH-hhc------CCCcHHHHccCCCE
Confidence            457788874  789999999999999999999999999999 89999999999996 322      14689999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      ++++++++.++++.|.+++++++||+|++|+++|+||..|+++....
T Consensus        84 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           84 FVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             CEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999988999999999999987554

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.71  E-value=8.8e-17  Score=142.29  Aligned_cols=120  Identities=22%  Similarity=0.290  Sum_probs=107.0

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  190 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~  190 (346)
                      ...+++++|++  +++++++++++.++++.|.++     +++++||++ +|+++|+||.+|++ ..      ....++.+
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~~------~~~~~v~~  203 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVAE  203 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHH-HS------CTTCBSTT
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHh-cC------CCCCcHHH
Confidence            45679999985  899999999999999999987     789999999 89999999999997 32      12578999


Q ss_pred             ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHH
Q 019128          191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  245 (346)
Q Consensus       191 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~  245 (346)
                      +|.++++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.+.
T Consensus       204 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          204 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred             HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.70  E-value=2.4e-17  Score=136.13  Aligned_cols=149  Identities=17%  Similarity=0.202  Sum_probs=107.4

Q ss_pred             cccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           17 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        17 ~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      .++|+++|++  +++++++++|+.+|+++|.+++++++||+| +|+++|+||..|+++...........  .       .
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~--~-------~   73 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQND--T-------N   73 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCc--c-------c
Confidence            4689999998  899999999999999999999999999999 79999999999997532110000000  0       0


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                      +....+...... .............+++++|.+  +++++++++++.++++.|.+++++++||++ +|+++|+||.+|+
T Consensus        74 ~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di  150 (180)
T 3sl7_A           74 LFPDVDSTWKTF-NELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV  150 (180)
T ss_dssp             -------CCCSH-HHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred             ccccccchhhhh-HHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence            000000000111 111122222345678999985  678899999999999999999999999999 8999999999999


Q ss_pred             HHHHH
Q 019128          173 LMRVI  177 (346)
Q Consensus       173 l~~~~  177 (346)
                      ++.+.
T Consensus       151 l~~~~  155 (180)
T 3sl7_A          151 VRAAL  155 (180)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            84443

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.70  E-value=1.1e-16  Score=142.24  Aligned_cols=121  Identities=21%  Similarity=0.283  Sum_probs=108.6

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  190 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~  190 (346)
                      ...+++++|++  +++++++++++.++++.|.++     +++++||+| +|+++|+||.+|++ ..      ....++.+
T Consensus       135 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll-~~------~~~~~v~~  205 (286)
T 2oux_A          135 EDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-VN------DDDTLIAD  205 (286)
T ss_dssp             CTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-TS------CTTSBHHH
T ss_pred             ChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHH-cC------CCCCcHHH
Confidence            35578999985  799999999999999999998     788999999 89999999999997 21      12578999


Q ss_pred             ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       191 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      +|.++++++++++++.++++.|.+++++++||||++|+++|+||..|+++.+....
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999765543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.70  E-value=1e-16  Score=132.99  Aligned_cols=119  Identities=20%  Similarity=0.202  Sum_probs=103.5

Q ss_pred             cccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        17 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      .++|+++|+++++++++++|+.+|+++|.+++++++||+| +|+++|++|..|+++.....                   
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~-------------------   68 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR-------------------   68 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG-------------------
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc-------------------
Confidence            4899999999999999999999999999999999999998 79999999999997642100                   


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                       .......+++++|.+  +++++++++++.++++.|.+++.+.+||+| +|+++|+||..|++
T Consensus        69 -----------------~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll  128 (184)
T 1pvm_A           69 -----------------NKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS  128 (184)
T ss_dssp             -----------------CCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHT
T ss_pred             -----------------ccCcccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH
Confidence                             000123468889974  788999999999999999999999999999 59999999999997

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.68  E-value=8.9e-17  Score=130.07  Aligned_cols=127  Identities=15%  Similarity=0.220  Sum_probs=104.0

Q ss_pred             CCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           14 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        14 ~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      .+...+|+++|.+  +++++++++++.+|++.|.+++++++||+| +|+++|+||..|+++.....              
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~--------------   75 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL--------------   75 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS--------------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh--------------
Confidence            5778999999998  899999999999999999999999999999 78999999999997652100              


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeH
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  169 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~  169 (346)
                               ... .        .......++.++|.+  +++++.+++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        76 ---------~~~-~--------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~  133 (159)
T 1yav_A           76 ---------ERI-E--------FEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR  133 (159)
T ss_dssp             ---------SSB-C--------GGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred             ---------ccc-c--------hhhhccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence                     000 0        001234567888874  78899999999999999999876  99999 8999999999


Q ss_pred             HHHHHHH
Q 019128          170 KDILMRV  176 (346)
Q Consensus       170 ~dll~~~  176 (346)
                      +|++..+
T Consensus       134 ~dil~~~  140 (159)
T 1yav_A          134 RVVLKEL  140 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998433

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.68  E-value=1.3e-16  Score=141.60  Aligned_cols=121  Identities=15%  Similarity=0.233  Sum_probs=106.2

Q ss_pred             hhcCCCCcccccccccCCCeeecCCccHHHHHHHHHhC-----Ccceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhh
Q 019128           10 ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEK   83 (346)
Q Consensus        10 ~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~-----~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~   83 (346)
                      ..-..+...+|+++|+++++++++++|+.+|++.|.++     +++++||+| +|+++|+||.+|++..           
T Consensus       129 ~~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-----------  197 (286)
T 2oux_A          129 KELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-----------  197 (286)
T ss_dssp             HHHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-----------
T ss_pred             HHHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC-----------
Confidence            33447788999999999999999999999999999987     788999999 7999999999998642           


Q ss_pred             hhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCE
Q 019128           84 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  162 (346)
Q Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~  162 (346)
                                                      ....+++++|.+  +++++++++++.++++.|.+++.+++||+| +|+
T Consensus       198 --------------------------------~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~  243 (286)
T 2oux_A          198 --------------------------------DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDH  243 (286)
T ss_dssp             --------------------------------CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred             --------------------------------CCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCe
Confidence                                            123457788864  688999999999999999999999999999 899


Q ss_pred             EEEEeeHHHHHHH
Q 019128          163 PRGILTSKDILMR  175 (346)
Q Consensus       163 ~~Giit~~dll~~  175 (346)
                      ++|+||..|++..
T Consensus       244 lvGiIT~~Dil~~  256 (286)
T 2oux_A          244 LLGIVTVDDIIDV  256 (286)
T ss_dssp             EEEEEEHHHHHHH
T ss_pred             EEEEEEHHHHHHH
Confidence            9999999999843

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.66  E-value=3.2e-16  Score=138.69  Aligned_cols=120  Identities=21%  Similarity=0.244  Sum_probs=106.2

Q ss_pred             cCCCCcccccccccCCCeeecCCccHHHHHHHHHhC-----Ccceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhh
Q 019128           12 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGK   85 (346)
Q Consensus        12 ~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~-----~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~   85 (346)
                      ...+...+++++|+++++++++++++.+|++.|.++     ++.++||+| +|+++|+||.+|++..             
T Consensus       129 ~l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------------  195 (278)
T 2yvy_A          129 LARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------------  195 (278)
T ss_dssp             HHHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS-------------
T ss_pred             HHCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC-------------
Confidence            336678899999999999999999999999999986     789999999 7999999999998642             


Q ss_pred             hHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEE
Q 019128           86 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPR  164 (346)
Q Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~  164 (346)
                                                    ....+++++|.+  +++++++++++.++++.|.+++.+.+||+| +|+++
T Consensus       196 ------------------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lv  243 (278)
T 2yvy_A          196 ------------------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV  243 (278)
T ss_dssp             ------------------------------CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEE
T ss_pred             ------------------------------CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEE
Confidence                                          123568899964  688999999999999999999999999999 89999


Q ss_pred             EEeeHHHHHHHHH
Q 019128          165 GILTSKDILMRVI  177 (346)
Q Consensus       165 Giit~~dll~~~~  177 (346)
                      |+||..|++ ..+
T Consensus       244 GivT~~Dil-~~i  255 (278)
T 2yvy_A          244 GIVTVDDVL-DVL  255 (278)
T ss_dssp             EEEEHHHHH-HHC
T ss_pred             EEEEHHHHH-HHH
Confidence            999999998 443

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.66  E-value=4.5e-16  Score=134.71  Aligned_cols=125  Identities=15%  Similarity=0.101  Sum_probs=103.1

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC---CEEEEEeeHHHHHHHHHhc----CC---C----
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQ----NL---P----  182 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~---~~~~Giit~~dll~~~~~~----~~---~----  182 (346)
                      ...+++++|+.  +++++.+++++.+|.++|.+++++++||+++   ++++|+||.+|++..+...    ..   .    
T Consensus        11 ~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A           11 YNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             CCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            34578999984  8999999999999999999999999999983   5899999999998322211    00   0    


Q ss_pred             ----------------------c---------------------------------------------------------
Q 019128          183 ----------------------A---------------------------------------------------------  183 (346)
Q Consensus       183 ----------------------~---------------------------------------------------------  183 (346)
                                            .                                                         
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                                  0                                                         


Q ss_pred             ---------------ccccc--c-cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          184 ---------------DSTLV--E-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       184 ---------------~~~~v--~-~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                                     ...++  . .+|.+.|+++.+++++.++..+|...+++++||++ .|+++||||++||++++.+
T Consensus       169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                           01222  2 36889999999999999999999999999999998 7999999999999998654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.64  E-value=1.6e-15  Score=143.48  Aligned_cols=119  Identities=22%  Similarity=0.293  Sum_probs=107.5

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 019128          117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  190 (346)
Q Consensus       117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~  190 (346)
                      ...+++++|++  ++++++++.++.++++.|.++     +++++||+| +++++|++|.+|++ ..      ....++++
T Consensus       153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll-~~------~~~~~v~d  223 (473)
T 2zy9_A          153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVAE  223 (473)
T ss_dssp             CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHH-HS------CTTSBGGG
T ss_pred             CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHh-cC------CCCCcHHH
Confidence            45678999985  899999999999999999986     478999999 78999999999997 31      12578999


Q ss_pred             ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       191 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +|+++++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.+
T Consensus       224 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          224 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999987654

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.63  E-value=9.6e-17  Score=157.27  Aligned_cols=122  Identities=11%  Similarity=0.013  Sum_probs=103.9

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHH-HcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-------------
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKML-ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-------------  182 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~-------------  182 (346)
                      ..+++++|+|++++.++++++++.++.+.|. +++++++||+| +++++|+||.+|++ +.+.....             
T Consensus       452 ~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~-~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          452 EMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIV-DRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHT-TTTTTC---------------
T ss_pred             cCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHH-HHHHHHhhhccccccccccee
Confidence            4568999998789999999999999999999 79999999999 79999999999997 43322110             


Q ss_pred             ----------------------------------ccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCc
Q 019128          183 ----------------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  228 (346)
Q Consensus       183 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  228 (346)
                                                        ....+++++|+++++++++++++.++++.|.+++++++||+ ++|+
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~  609 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGK  609 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCE
Confidence                                              00113788999999999999999999999999999999999 6899


Q ss_pred             EEEEEehHHHHHH
Q 019128          229 VVDVVDVIHITHA  241 (346)
Q Consensus       229 ~~Giit~~Di~~~  241 (346)
                      ++|+||++|++++
T Consensus       610 lvGIVT~~Dll~~  622 (632)
T 3org_A          610 LVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEGGGTEEC
T ss_pred             EEEEEehhhHHHH
Confidence            9999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.63  E-value=8.1e-16  Score=147.91  Aligned_cols=124  Identities=10%  Similarity=0.079  Sum_probs=108.0

Q ss_pred             CCCccccccCCCceeEeCCC-CcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 019128          118 RPSLSTIIPEKSKVVTISPT-DTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  194 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~-~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  194 (346)
                      ..+++++|++  +++++.++ +++.+++++|.+++++++||+|  +++++|+||.+|+++.+... ......+++++|++
T Consensus       383 ~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~-~~~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM-NRQQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH-CCCTTSBGGGGEET
T ss_pred             CCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc-cCcCCCcHHHHhcC
Confidence            4679999984  78999999 9999999999999999999999  78999999999998555443 22336799999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCceeEEEcCC----CcEEEEEehHHHHHHHHHHc
Q 019128          195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD----GDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~----g~~~Giit~~Di~~~~~~~i  246 (346)
                      +++++++++++.++++.|.++++  +||||++    |+++||||..||++++....
T Consensus       460 ~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            99999999999999999977765  7999984    99999999999999866543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.60  E-value=3.8e-15  Score=141.01  Aligned_cols=122  Identities=20%  Similarity=0.217  Sum_probs=107.2

Q ss_pred             HhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHhC-----Ccceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHh
Q 019128            9 IARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAE   82 (346)
Q Consensus         9 ~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~-----~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~   82 (346)
                      +.+...+.+.+++++|+++++++++++|+.+|++.|.++     +++++||+| +++++|++|.+|++..          
T Consensus       146 i~~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~----------  215 (473)
T 2zy9_A          146 VEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----------  215 (473)
T ss_dssp             HHHHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS----------
T ss_pred             HHHHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC----------
Confidence            334447788999999999999999999999999999986     589999999 7999999999998642          


Q ss_pred             hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 019128           83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  161 (346)
Q Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~  161 (346)
                                                       ....+++++|.+  +++++++++++.++++.|.+++...+||+| +|
T Consensus       216 ---------------------------------~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g  260 (473)
T 2zy9_A          216 ---------------------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG  260 (473)
T ss_dssp             ---------------------------------CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             ---------------------------------CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC
Confidence                                             123568899974  789999999999999999999999999999 89


Q ss_pred             EEEEEeeHHHHHHH
Q 019128          162 KPRGILTSKDILMR  175 (346)
Q Consensus       162 ~~~Giit~~dll~~  175 (346)
                      +++|+||.+|++..
T Consensus       261 ~lvGiIT~~Dil~~  274 (473)
T 2zy9_A          261 RLVGIVTVDDVLDV  274 (473)
T ss_dssp             BEEEEEEHHHHHHH
T ss_pred             EEEEEEehHhhHHH
Confidence            99999999999843

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.59  E-value=2.1e-15  Score=145.09  Aligned_cols=124  Identities=13%  Similarity=0.210  Sum_probs=104.9

Q ss_pred             CCCcccccccccCCCeeecCC-ccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           14 NLEETPVSKVMTRNPTFVLSD-TLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        14 ~~~~~~v~dim~~~~i~v~~~-~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      .+...+|+++|++++++++++ +|+.+|+++|.+++++++||+|  +++++|+||.+||++.+...              
T Consensus       380 ~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~--------------  445 (527)
T 3pc3_A          380 WWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM--------------  445 (527)
T ss_dssp             TTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH--------------
T ss_pred             cccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc--------------
Confidence            355789999999999999999 9999999999999999999999  68999999999998764321              


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC-----CEEEE
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-----NKPRG  165 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~-----~~~~G  165 (346)
                                             ......++.++|.+  +++++++++++.+++++|.++++  +||+|+     |+++|
T Consensus       446 -----------------------~~~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvG  498 (527)
T 3pc3_A          446 -----------------------NRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKA  498 (527)
T ss_dssp             -----------------------CCCTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEE
T ss_pred             -----------------------cCcCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEE
Confidence                                   01224568999974  78999999999999999977664  799984     89999


Q ss_pred             EeeHHHHHHHHHhc
Q 019128          166 ILTSKDILMRVISQ  179 (346)
Q Consensus       166 iit~~dll~~~~~~  179 (346)
                      |||..|++ +.+.+
T Consensus       499 IVT~~Dll-~~l~~  511 (527)
T 3pc3_A          499 LATKLDVT-TFIAA  511 (527)
T ss_dssp             EEEHHHHH-HHHHT
T ss_pred             EEEHHHHH-HHHHh
Confidence            99999999 55544

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.58  E-value=1e-14  Score=138.88  Aligned_cols=115  Identities=24%  Similarity=0.303  Sum_probs=103.2

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc-CC
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP  196 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~-~~  196 (346)
                      ..+.|.+  +++++++++++.+++++|.+++++++||++   +++++|+||.+|+. .     ......++.++|++ ++
T Consensus       115 ~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~-~-----~~~~~~~V~~vM~~~~~  186 (511)
T 3usb_A          115 SESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR-F-----IQDYSIKISDVMTKEQL  186 (511)
T ss_dssp             SSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHT-T-----CCCSSSBHHHHCCCCCC
T ss_pred             ccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhh-h-----hccCCCcHHHhcccCCC
Confidence            4466664  788999999999999999999999999998   57999999999995 2     12236789999997 99


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      +++++++++.++++.|.+++++.+||||++|+++|+||.+|+++.+.
T Consensus       187 vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999864

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.57  E-value=5.6e-17  Score=150.42  Aligned_cols=146  Identities=22%  Similarity=0.238  Sum_probs=14.5

Q ss_pred             hhhhhHhhhhhhhhhccCCCCCChh-hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-
Q 019128           82 EKGKAIAAAVEGVEKHWGTSISGPN-TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-  159 (346)
Q Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-  159 (346)
                      +..++++.+..+     |.++++.+ +..++..+.-.-..-...|.  .+++++.|+.++.+++++|.+++++.+||++ 
T Consensus       105 e~~MAIamAr~G-----GiGvIH~n~sie~Qa~~V~~VKr~e~g~i--~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~  177 (556)
T 4af0_A          105 EDRMAIALALHG-----GLGIIHHNCSAEEQAAMVRRVKKYENGFI--TDPLCLGPDATVGDVLEIKAKFGFCGVPITET  177 (556)
T ss_dssp             SHHHHHHHHHTT-----CEEEECCSSCHHHHHHHHHHHHHCCC-------------------------------------
T ss_pred             CHHHHHHHHHCC-----CeEEEcCCCCHHHHHHHHHHHHhcccCcc--CCCeEcCCCCCHHHHHHHHHHhCCCccccccc
Confidence            334445555555     66666654 22333222111011122333  3689999999999999999999999999998 


Q ss_pred             ---CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehH
Q 019128          160 ---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI  236 (346)
Q Consensus       160 ---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~  236 (346)
                         +++++||||.+|+.  +.    + ...+++++|+++++++++..++.+|.++|.++++..+||||++|+++|+||++
T Consensus       178 g~~~~kLvGIvT~RD~r--f~----d-~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~k  250 (556)
T 4af0_A          178 GEPDSKLLGIVTGRDVQ--FQ----D-AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARS  250 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcCCEEEEEEeccccc--cc----c-cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEec
Confidence               46899999999983  31    1 26799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 019128          237 HITHA  241 (346)
Q Consensus       237 Di~~~  241 (346)
                      |+.+.
T Consensus       251 Di~k~  255 (556)
T 4af0_A          251 DLLKN  255 (556)
T ss_dssp             -----
T ss_pred             hhhhh
Confidence            99986

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.56  E-value=4.2e-16  Score=147.89  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc-c-CC
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NP  196 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~-~~  196 (346)
                      +..++|.  .+++++++++++.+++++|.+++++++||++ +++++|+||.+|+. .     ......++.++|+ + ++
T Consensus        90 ~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~-~-----~~~~~~~v~diM~p~~~~  161 (496)
T 4fxs_A           90 IFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR-F-----VTDLTKSVAAVMTPKERL  161 (496)
T ss_dssp             HCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT-T-----CCCTTSBGGGTSEEGGGC
T ss_pred             ccccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh-h-----cccCCCcHHHHhcCCCCC
Confidence            3567787  4789999999999999999999999999999 89999999999995 1     1123678999998 4 69


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      +++++++++.++++.|.+++++.+||||++|+++|+||++|+++.
T Consensus       162 vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          162 ATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             CEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence            999999999999999999999999999999999999999999986

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.55  E-value=1.7e-14  Score=137.30  Aligned_cols=160  Identities=13%  Similarity=0.186  Sum_probs=124.5

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      +.+++|..+++++++++|+.+|+++|.+++++++||+|   +++++|+||.+|+...                       
T Consensus       114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~-----------------------  170 (511)
T 3usb_A          114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI-----------------------  170 (511)
T ss_dssp             TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC-----------------------
T ss_pred             ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh-----------------------
Confidence            45677888999999999999999999999999999998   5799999999998420                       


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  174 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~  174 (346)
                                         .....+++++|++ .+++++++++++.+++++|.+++++.+||+| +|+++|+||.+|++ 
T Consensus       171 -------------------~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil-  229 (511)
T 3usb_A          171 -------------------QDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIE-  229 (511)
T ss_dssp             -------------------CCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHH-
T ss_pred             -------------------ccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHH-
Confidence                               0123457888874 4789999999999999999999999999999 89999999999998 


Q ss_pred             HHHhcCCCccccccccccccCCe--eecCCCCHHHHHHHhHhCCCceeEEEcCCC
Q 019128          175 RVISQNLPADSTLVEKVMTPNPE--CATIDTPIVDALHIMHDGKFLHLPVVDRDG  227 (346)
Q Consensus       175 ~~~~~~~~~~~~~v~~~m~~~~~--~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g  227 (346)
                      +.+...     ....+.+.+..+  .+.......+.++.+.+.+...+.|-..+|
T Consensus       230 ~~~~~p-----~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          230 KVIEFP-----NSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             HHHHCT-----TCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             Hhhhcc-----cchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            444431     123344433333  333344556667778888998887765554

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.54  E-value=5.9e-16  Score=147.54  Aligned_cols=168  Identities=14%  Similarity=0.085  Sum_probs=26.4

Q ss_pred             cccccc-ccCCCeeecCCccHHHHHHHHHhCCcceeeeee-C---CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           18 TPVSKV-MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        18 ~~v~di-m~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      .+..++ |+++++++++++|+.+|+++|.+++++++||+| +   ++++|+||.+|+...  .                 
T Consensus        96 V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~-----------------  156 (503)
T 1me8_A           96 VKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L-----------------  156 (503)
T ss_dssp             HHTTTC--------------------------------------------------------------------------
T ss_pred             hhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h-----------------
Confidence            344555 999999999999999999999999999999998 5   899999999998642  0                 


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                                            .....+++++|++..+++++++++++.+++++|.+++++.+||+| +|+++|+||.+|
T Consensus       157 ----------------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~D  214 (503)
T 1me8_A          157 ----------------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKD  214 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecH
Confidence                                  012345888898634499999999999999999999999999999 899999999999


Q ss_pred             HHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEE
Q 019128          172 ILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  231 (346)
Q Consensus       172 ll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~G  231 (346)
                      +++.+. ..... ..+...++.  ...++. ....+.++.|.+.+.+.++|--.+|...|
T Consensus       215 il~~~~-~~~~~-~d~~~~l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~  269 (503)
T 1me8_A          215 YDRSQV-CHNEL-VDSQKRYLV--GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEW  269 (503)
T ss_dssp             --------CCCC-BCTTSCBCC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHH
T ss_pred             HHHhhh-cccch-hcccccccc--ccccCc-hhHHHHHHHHHhhhccceEEecccCcccc
Confidence            984433 32211 112222321  123344 56667788888888887655333344333

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.53  E-value=1.1e-14  Score=142.75  Aligned_cols=156  Identities=13%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             Cccccccccc--CCCeeecCCccHHHHHHHHH-hCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhh--hHhh
Q 019128           16 EETPVSKVMT--RNPTFVLSDTLAVEALQKMV-QGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGK--AIAA   89 (346)
Q Consensus        16 ~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~-~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~--~~~~   89 (346)
                      ++++|+|+|+  ++++++++++|+.|+.+.|. +++++++||+| +++++|+||.+|+.+..............  ....
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            6789999999  89999999999999999999 89999999999 79999999999998754321110000000  0000


Q ss_pred             hh--hhhhhccCCCCCC-----hhhHHHHHHH-HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCC
Q 019128           90 AV--EGVEKHWGTSISG-----PNTFIETLRE-RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN  161 (346)
Q Consensus        90 ~~--~~~~~~~g~~~~~-----~~~~~~~~~~-~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~  161 (346)
                      ..  ..+.+........     .....+.... .-...++.++|++  +++++++++++.++++.|.+++++++||+++|
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G  608 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVTERG  608 (632)
T ss_dssp             ----------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEEETT
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEEECC
Confidence            00  0000000000000     0000000000 0111247899985  78899999999999999999999999999999


Q ss_pred             EEEEEeeHHHHH
Q 019128          162 KPRGILTSKDIL  173 (346)
Q Consensus       162 ~~~Giit~~dll  173 (346)
                      +++|+||.+|++
T Consensus       609 ~lvGIVT~~Dll  620 (632)
T 3org_A          609 KLVGIVEREDVA  620 (632)
T ss_dssp             EEEEEEEGGGTE
T ss_pred             EEEEEEehhhHH
Confidence            999999999997

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.50  E-value=1.5e-13  Score=131.19  Aligned_cols=115  Identities=21%  Similarity=0.302  Sum_probs=104.3

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc-CC
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP  196 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~-~~  196 (346)
                      +.++|.+  +++++++++++.++++.|.+++++++||++   +++++|+||.+|++ ..  .   ....+++++|++ ++
T Consensus        92 ~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~-~~--~---~~~~~v~~im~~~~~  163 (491)
T 1zfj_A           92 SENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FI--S---DYNAPISEHMTSEHL  163 (491)
T ss_dssp             HTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HC--S---CSSSBTTTSCCCSCC
T ss_pred             HHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHh-hh--c---cCCCcHHHHcCCCCC
Confidence            4678875  788999999999999999999999999997   68999999999997 32  1   136789999988 89


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      +++++++++.++++.|.+++++.+||||++|+++|+||..|+++.+.
T Consensus       164 ~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          164 VTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999865

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.49  E-value=9.3e-14  Score=95.50  Aligned_cols=69  Identities=30%  Similarity=0.415  Sum_probs=63.2

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeee
Q 019128          131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  199 (346)
Q Consensus       131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v  199 (346)
                      ++++.|++++.+|+++|.+++++++||+++|+++||+|.+|+++++.+.+.+....+++++|+++++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            689999999999999999999999999999999999999999877777777766789999999998774

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.48  E-value=3.1e-15  Score=141.84  Aligned_cols=114  Identities=21%  Similarity=0.225  Sum_probs=2.0

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccc-c-CCee
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPEC  198 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~-~~~~  198 (346)
                      +.++|.+  +++++++++++.+++++|.+++++++||+++++++|+||.+|+. ...     ....++.++|+ + ++++
T Consensus        90 ~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~-~~~-----~~~~~V~~vMtp~~~~vt  161 (490)
T 4avf_A           90 HETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR-VKP-----NAGDTVAAIMTPKDKLVT  161 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh-hcc-----ccCCcHHHHhccCCCCEE
Confidence            5677874  78899999999999999999999999999999999999999995 221     12578999998 4 7999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++++.++++.|.+++++.+||||++|+++|+||++|+++..
T Consensus       162 v~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          162 AREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             --------------------------------------------
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence            99999999999999999999999999999999999999999873

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.48  E-value=3.3e-15  Score=142.41  Aligned_cols=114  Identities=21%  Similarity=0.186  Sum_probs=0.4

Q ss_pred             ccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeeHHHHHHHHHhcCCCccccccccccccC--Cee
Q 019128          125 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PEC  198 (346)
Q Consensus       125 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~---~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~--~~~  198 (346)
                      |.+  +++++++++++.+++++|.+++++++||++ +   ++++|+||.+|++ +. .   .....+++++|+++  +++
T Consensus       103 M~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~-~~-~---~~~~~~V~diM~~~~~~~t  175 (503)
T 1me8_A          103 FVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYP-ID-L---TQTETKVSDMMTPFSKLVT  175 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHH-hh-h---ccccCcHHHHhCCCCCCEE
Confidence            764  789999999999999999999999999999 5   7999999999996 32 1   12357899999887  999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  245 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~  245 (346)
                      +++++++.++++.|.+++++.+||||++|+++|+||.+||++.....
T Consensus       176 v~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          176 AHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ----------------------------------------------C
T ss_pred             EcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            99999999999999999999999999999999999999999986543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.44  E-value=4.6e-14  Score=133.76  Aligned_cols=117  Identities=24%  Similarity=0.301  Sum_probs=3.4

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      .+++++|..+++++++++|+.+|+++|.+++++.+||+|+++++|+||.+|+....                        
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~------------------------  143 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKP------------------------  143 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhcc------------------------
Confidence            45788999999999999999999999999999999999999999999999984210                        


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                                        ....+++++|+|+.+++++++++++.+++++|.+++++.+||+| +|+++|+||.+|++ +.
T Consensus       144 ------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil-~~  204 (490)
T 4avf_A          144 ------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIE-KA  204 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhh-hh
Confidence                              11245788888533689999999999999999999999999999 89999999999998 44


Q ss_pred             H
Q 019128          177 I  177 (346)
Q Consensus       177 ~  177 (346)
                      .
T Consensus       205 ~  205 (490)
T 4avf_A          205 K  205 (490)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.43  E-value=7e-14  Score=132.63  Aligned_cols=114  Identities=18%  Similarity=0.282  Sum_probs=89.5

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      .+++++|+.+++++++++|+.+|+++|.+++++++||+| +++++|+||.+|+...                        
T Consensus        89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------------------------  144 (496)
T 4fxs_A           89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV------------------------  144 (496)
T ss_dssp             HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------------------------
T ss_pred             cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------------------------
Confidence            356788999999999999999999999999999999999 7999999999998421                        


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                        .....++.++|+|..+++++++++++.+++++|.++++..+||+| +|+++|+||.+|++
T Consensus       145 ------------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl  204 (496)
T 4fxs_A          145 ------------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFH  204 (496)
T ss_dssp             ------------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC---
T ss_pred             ------------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHH
Confidence                              012356899998534589999999999999999999999999999 89999999999998

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.42  E-value=1.5e-14  Score=138.15  Aligned_cols=116  Identities=25%  Similarity=0.328  Sum_probs=5.7

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCe
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPE  197 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~  197 (346)
                      +.++|.+  +++++.+++++.++++.|.+++++.+||+| +++++|+||.+|+. +.  .   ....++.++|++  ++.
T Consensus        97 ~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~-~~--~---~~~~~v~~im~~~~~~~  168 (494)
T 1vrd_A           97 TENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVR-FE--K---NLSKKIKDLMTPREKLI  168 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHH-hh--c---CCCCcHHHHhCCCCCCe
Confidence            5678874  789999999999999999999999999999 78999999999996 32  1   125789999998  999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      ++++++++.++++.|.+++++.+||||++|+++|+||..|+++....
T Consensus       169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             ----------------------------------------CHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999998543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.41  E-value=8.8e-14  Score=132.74  Aligned_cols=117  Identities=23%  Similarity=0.380  Sum_probs=4.8

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      +++++|+++++++++++++.+|+++|.+++++.+||+| +++++|+||.+|+.+..                        
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------------------------  151 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------------------------
Confidence            56889999999999999999999999999999999999 78999999999986410                        


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                                        ....++.++|++..+++++++++++.+++++|.+++++.+||+| +|+++|+||.+|++ +.
T Consensus       152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll-~~  212 (494)
T 1vrd_A          152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM-SV  212 (494)
T ss_dssp             ---------------------------------------------------------------------------CH-HH
T ss_pred             ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH-hh
Confidence                              01235778887434789999999999999999999999999999 89999999999998 44


Q ss_pred             Hh
Q 019128          177 IS  178 (346)
Q Consensus       177 ~~  178 (346)
                      +.
T Consensus       213 ~~  214 (494)
T 1vrd_A          213 IE  214 (494)
T ss_dssp             HT
T ss_pred             hc
Confidence            43

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.37  E-value=1e-11  Score=118.45  Aligned_cols=116  Identities=19%  Similarity=0.291  Sum_probs=101.4

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      +++++|+++++++++++++.++++.|.+++++++||+|   +++++|+||.+|++...                      
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~----------------------  148 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS----------------------  148 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS----------------------
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc----------------------
Confidence            35789999999999999999999999999999999997   58999999999986420                      


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  174 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~  174 (346)
                                          -...+++++|.+ .+++++++++++.++++.|.+++.+.+||+| +++++|++|..|++ 
T Consensus       149 --------------------~~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil-  206 (491)
T 1zfj_A          149 --------------------DYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE-  206 (491)
T ss_dssp             --------------------CSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHH-
T ss_pred             --------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHH-
Confidence                                123468889973 2688999999999999999999999999999 89999999999998 


Q ss_pred             HHHh
Q 019128          175 RVIS  178 (346)
Q Consensus       175 ~~~~  178 (346)
                      +.+.
T Consensus       207 ~~~~  210 (491)
T 1zfj_A          207 KVIE  210 (491)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.35  E-value=7.5e-14  Score=132.70  Aligned_cols=112  Identities=29%  Similarity=0.408  Sum_probs=0.9

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeec
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECAT  200 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~  200 (346)
                      ..+.|.  .+++++++++++.++++.|.+++++++||+++++++|+||.+|++ .   .    ...++.++|++++++++
T Consensus        95 ~~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~-~---~----~~~~v~~im~~~~~~v~  164 (486)
T 2cu0_A           95 AERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIA-A---R----EGKLVKELMTKEVITVP  164 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhc-c---C----CCCCHHHHccCCCeEEC
Confidence            355676  478999999999999999999999999999989999999999996 3   1    25689999998999999


Q ss_pred             CCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          201 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       201 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++.++++.|.+++++.+||||++|+++|+||.+||++..
T Consensus       165 ~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          165 ESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             ------------------------------------------
T ss_pred             CcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence            999999999999999999999999999999999999999873

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.31  E-value=4.4e-13  Score=124.55  Aligned_cols=107  Identities=14%  Similarity=0.199  Sum_probs=0.4

Q ss_pred             ccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           22 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        22 dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      ..|..+|+++.|+.|+.||+++|.+++++.+||+|+    ++++|+||.+|+-..                         
T Consensus       142 ~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------------------------  196 (556)
T 4af0_A          142 NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------------------------  196 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------------------------
Confidence            457778999999999999999999999999999984    689999999996311                         


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                        -...+++++|++  ++++++.+.++++|.++|.++++..+||+| +++++|+||.+|+.
T Consensus       197 ------------------d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~  253 (556)
T 4af0_A          197 ------------------DAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLL  253 (556)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             ------------------ccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhh
Confidence                              012458889985  799999999999999999999999999999 89999999999997

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.28  E-value=6.4e-14  Score=134.24  Aligned_cols=116  Identities=24%  Similarity=0.302  Sum_probs=69.4

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCcccccccccccc-
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-  194 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~-  194 (346)
                      ++.++|.+  +++++.+++++.+++++|.+++++.+||+|+    ++++|+||.+|+. ....   .....++.++|++ 
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~-~~~~---~~~~~~v~~vm~~~  182 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID-FLAE---KDHTTLLSEVMTPR  182 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CC
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHH-hhhh---ccCCCCHHHHhCCC
Confidence            47788874  6889999999999999999999999999984    7999999999996 3321   1125689999998 


Q ss_pred             -CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          195 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       195 -~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                       +++++++++++.++++.|.+++.+.+||||++|+++|+||+.|+++.
T Consensus       183 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          183 IELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             BCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSC
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHH
Confidence             99999999999999999999999999999999999999999998865

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.28  E-value=6.5e-13  Score=126.24  Aligned_cols=162  Identities=16%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccC
Q 019128           20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG   99 (346)
Q Consensus        20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   99 (346)
                      +.++|..+++++++++++.+++++|.+++++.+||+|+++++|+|+.+|++..                           
T Consensus        95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~~---------------------------  147 (486)
T 2cu0_A           95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAR---------------------------  147 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhccC---------------------------
Confidence            46689999999999999999999999999999999988999999999998530                           


Q ss_pred             CCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHh
Q 019128          100 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  178 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~  178 (346)
                                       ...++.++|.+  +++++++++++.++++.|.+++.+.+||+| +++++|++|.+|++ +...
T Consensus       148 -----------------~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil-~~~~  207 (486)
T 2cu0_A          148 -----------------EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV-ARKK  207 (486)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -----------------CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHH-Hhhh
Confidence                             12346777764  688999999999999999999999999999 89999999999998 5443


Q ss_pred             cCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEc-CCCcEEEEEe
Q 019128          179 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVD  234 (346)
Q Consensus       179 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~~Giit  234 (346)
                      ..... ......++..  ..++..+  .+.+..+...+...+ |+| ..|...++++
T Consensus       208 ~~~~~-~~~~g~~~v~--~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          208 YKNAV-RDENGELLVA--AAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             CTTCC-BCTTSCBCCE--EEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             ccccc-cccCCceeec--ceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence            21100 0001111111  1122333  556777888888765 555 3555544443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.24  E-value=6.9e-13  Score=127.09  Aligned_cols=116  Identities=11%  Similarity=0.187  Sum_probs=68.6

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      .++.++|.++++++++++++.+|+++|.+++++.+||+|+    ++++|+||.+|+.... .                  
T Consensus       108 ~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~-~------------------  168 (514)
T 1jcn_A          108 KNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA-E------------------  168 (514)
T ss_dssp             HTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-----------------------
T ss_pred             hhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh-h------------------
Confidence            3678999999999999999999999999999999999984    8999999999975420 0                  


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                                           .....++.++|.+..+++++++++++.+++++|.+++...+||+| +|+++|+||.+|+
T Consensus       169 ---------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dl  227 (514)
T 1jcn_A          169 ---------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL  227 (514)
T ss_dssp             ---------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCC
T ss_pred             ---------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHH
Confidence                                 012245778887433789999999999999999999999999999 8999999999999


Q ss_pred             H
Q 019128          173 L  173 (346)
Q Consensus       173 l  173 (346)
                      +
T Consensus       228 l  228 (514)
T 1jcn_A          228 K  228 (514)
T ss_dssp             S
T ss_pred             H
Confidence            7

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.13  E-value=2e-11  Score=83.72  Aligned_cols=46  Identities=13%  Similarity=0.138  Sum_probs=43.3

Q ss_pred             CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHH
Q 019128           27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYD   72 (346)
Q Consensus        27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~   72 (346)
                      .+++++|++|+.+|+++|.+++++++||+|+|+++|++|.+|+++.
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~   46 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDK   46 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence            3689999999999999999999999999999999999999999865

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.97  E-value=2.8e-09  Score=92.08  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHH
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  177 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~  177 (346)
                      ..+++++|.+  +++++++++++.+|++.|.+++++++||+| +|+++|++|..|+++.+.
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~   64 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYM   64 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            4578999974  789999999999999999999999999999 799999999999984443

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=97.66  E-value=2e-05  Score=56.49  Aligned_cols=52  Identities=10%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             hcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          269 MALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       269 ~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      +.+..++++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.++++
T Consensus        35 l~~~l~~~~~dTlgG~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~d~~rI~~v~v   87 (91)
T 2pli_A           35 FGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQ--------FTVARADNRRLHTLMA   87 (91)
T ss_dssp             HCCCCCCSSCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEECSSCEEEEEE
T ss_pred             hCCCCCCCCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEeCCEEEEEEE
Confidence            3444556679999999999999999999999999888        9999987 55655543

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=97.62  E-value=1.7e-05  Score=55.86  Aligned_cols=53  Identities=11%  Similarity=0.054  Sum_probs=43.2

Q ss_pred             hhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEec
Q 019128          268 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC  328 (346)
Q Consensus       268 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~~  328 (346)
                      .+.+..++++|+|++|++...++++|..|+.+.+.++.        |+|.+++| ++.++++
T Consensus        25 ~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v~v   78 (83)
T 3llb_A           25 FFGSEFSDEEFDTVGGLVMSAFGHLPKRNEVVELGEFR--------FRVLNADSRRVHLLRL   78 (83)
T ss_dssp             HHCCCCCTTTCSBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEECSSCEEEEEE
T ss_pred             HhCCCCCCCCCcCHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            34445566789999999999999999999999999988        99999976 5544443

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=97.58  E-value=1.9e-05  Score=55.32  Aligned_cols=51  Identities=6%  Similarity=0.032  Sum_probs=42.0

Q ss_pred             hhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEE
Q 019128          268 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRF  326 (346)
Q Consensus       268 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~  326 (346)
                      .+.+..++++|+|++|++...++++|..|+.+.+.++.        |+|.+++| ++.++
T Consensus        25 ~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v   76 (81)
T 3lae_A           25 MFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLL--------ITILEVGDNMIKQA   76 (81)
T ss_dssp             HHCCCCCCSSCSBHHHHHHHHCSSCCCTTCEEEETTEE--------EEEEEEETTEEEEE
T ss_pred             HhCCCCCCCCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEeeCCEEEEE
Confidence            34445566779999999999999999999999999988        99999876 44443

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=97.52  E-value=3e-05  Score=54.98  Aligned_cols=45  Identities=9%  Similarity=-0.038  Sum_probs=38.7

Q ss_pred             CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          276 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       276 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      ++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.++++
T Consensus        37 ~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v~v   82 (86)
T 2pls_A           37 GVYHTLSGMIMWLLGRLPQTGDITFWENWR--------LEVIDMDSKRIDKVLA   82 (86)
T ss_dssp             CSCCBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             CCcccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            579999999999999999999999999888        9999987 45555443

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=97.49  E-value=3.9e-05  Score=55.23  Aligned_cols=52  Identities=6%  Similarity=-0.001  Sum_probs=41.9

Q ss_pred             hcCCCCCCccccccccccccccCCCCCcccccC--CCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          269 MALSPNDDEEDNRSEGSLKFASEGADTARYLSY--PSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       269 ~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      +.+..++++|+|++|++...++++|..|+.+.+  .++.        |+|.+++ +++.++++
T Consensus        33 l~~~l~~~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~~~--------f~V~~~~~~rI~~v~v   87 (93)
T 2r2z_A           33 FETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIK--------LTAEEMEGTRLLVLRV   87 (93)
T ss_dssp             HTCCCCCTTCCBHHHHHHHHHSSCCCTTCCCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             hCCCCCCCCcccHHHHHHHHhCCCCCCCCEEEEecCCEE--------EEEEEeeCCEEEEEEE
Confidence            334445567999999999999999999999977  8888        9999986 55555544

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=97.48  E-value=2.8e-05  Score=56.05  Aligned_cols=45  Identities=4%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          276 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       276 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      ++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.++++
T Consensus        45 ~~~dTlgG~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~d~~rI~~V~v   90 (94)
T 2oai_A           45 NNYHTLAGMCISYFGRIPHVGEYFDWAGWR--------IEIVDLDGARIDXLLL   90 (94)
T ss_dssp             CCCSBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             CCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEcCCEEEEEEE
Confidence            568999999999999999999999999888        9999987 55555543

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=97.46  E-value=4e-05  Score=54.81  Aligned_cols=50  Identities=6%  Similarity=-0.083  Sum_probs=40.8

Q ss_pred             cCCCCC--CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEe
Q 019128          270 ALSPND--DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT  327 (346)
Q Consensus       270 ~~~~~~--~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~  327 (346)
                      .+..++  ++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.+++
T Consensus        33 ~~~l~~~~~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~d~~rI~~v~   85 (90)
T 2p13_A           33 EHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLI--------FEIVSVNKHNIGKVR   85 (90)
T ss_dssp             TSCCCCTTCCCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEECCBCSSSBCEEE
T ss_pred             CCCCCCcCCCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEeCCEEEEEE
Confidence            334444  579999999999999999999999999888        9999987 4555544

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=97.45  E-value=3e-05  Score=55.71  Aligned_cols=54  Identities=11%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             HhhcCC-CC-CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          267 SAMALS-PN-DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       267 ~~~~~~-~~-~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      ..+.+. .+ +++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.++++
T Consensus        32 ~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~V~v   88 (92)
T 2o3g_A           32 PQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWR--------FEVVEKEGQRIERVKI   88 (92)
T ss_dssp             TTTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             HHhCCCCCCcCCCcccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            334444 45 5679999999999999999999999999888        9999987 45555543

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=97.43  E-value=3.7e-05  Score=56.01  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             cCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC------eEEEec
Q 019128          270 ALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL------MHRFTC  328 (346)
Q Consensus       270 ~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~------~~~~~~  328 (346)
                      .+..++++|+|++|++...++++|..|+.+.++ +.        |+|.+++|+      +.++++
T Consensus        30 g~~l~~e~~dTlgGli~~~lg~iP~~Gd~v~~~-~~--------f~V~~~d~~~~~r~rI~~V~v   85 (101)
T 2p3h_A           30 GYELPEGDYETISGLLFDHANALLKTGDVIEIP-LD--------FEPEDYLNNTSPTQRILRITV   85 (101)
T ss_dssp             TSCCCCSSCCBHHHHHHHHHCSCCCTTCEEEEE-CC--------CCGGGGTTCSSCCCCEEEEEE
T ss_pred             CCCCCCCCCccHHHHHHHHhCCCCCCCCEEEEe-EE--------EEEEEEeCCCCcCCEEEEEEE
Confidence            344456679999999999999999999999988 99        999999865      665554

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=97.42  E-value=5e-05  Score=53.79  Aligned_cols=53  Identities=8%  Similarity=0.102  Sum_probs=42.0

Q ss_pred             hhcCC-CCC-CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          268 AMALS-PND-DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       268 ~~~~~-~~~-~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      .+.+. .++ ++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.++++
T Consensus        25 ~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v~v   80 (86)
T 2p4p_A           25 ALNIHTFPRDENYETIGGFMMYMLRXIPXXTDFVLYDXYX--------FEIIDTENFRIDQLMV   80 (86)
T ss_dssp             HTTCCCSCCSCSSCBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             HhCCCCCCcCCCCccHHHHHHHHhCCCCCCCcEEEEeeEE--------EEEEEccCCEEEEEEE
Confidence            34443 443 579999999999999999999999999888        9999986 45555543

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=97.36  E-value=4.2e-05  Score=54.29  Aligned_cols=52  Identities=12%  Similarity=0.025  Sum_probs=41.2

Q ss_pred             hcCCCCCCccccccccccccccCCCCCcc--cccCCC----CCCCCCCceeEEEecCC-CCeEEEec
Q 019128          269 MALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPS----PSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       269 ~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~----~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      +.+..++++|+|++|++...++++|..|+  .+.+.+    +.        |+|.+++ +++.++++
T Consensus        25 l~~~l~~~~~dTl~G~v~~~lg~iP~~Gd~~~v~~~~~~~~~~--------f~V~~~~~~rI~~v~v   83 (87)
T 2rk5_A           25 FETDLESDNVDTIAGFYLTGVGTIPSQEEKEHFEVESNGKHLE--------LINDKVKDGRVTKLKI   83 (87)
T ss_dssp             HTCCCCCTTCCBHHHHHHHHHCSCCCSSSCCEEEEEETTEEEE--------EEEEEEETTEEEEEEE
T ss_pred             hCCCCCCCCcccHHHHHHHHhCcCCCCCCcEEEEECCceEEEE--------EEEEEEeCCEEEEEEE
Confidence            44455666799999999999999999999  887776    67        9999987 45555443

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4

Probab=97.31  E-value=9.3e-05  Score=53.21  Aligned_cols=45  Identities=20%  Similarity=0.135  Sum_probs=39.2

Q ss_pred             CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          276 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       276 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      ++|+|++|++...++++|..|+.+.+.++.        |+|.+++ +++.++++
T Consensus        44 ~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~d~~rI~~V~v   89 (93)
T 2nqw_A           44 DEVDTLSGLFLEIKQELPHVGDTAVYEPFR--------FQVTQMDKRRIIEIKI   89 (93)
T ss_dssp             TTCSBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEECSSSEEEEEE
T ss_pred             CCcccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            468999999999999999999999999888        9999987 56666554

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=97.13  E-value=0.00011  Score=54.84  Aligned_cols=44  Identities=11%  Similarity=0.048  Sum_probs=38.1

Q ss_pred             CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEe
Q 019128          276 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  327 (346)
Q Consensus       276 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~  327 (346)
                      ++|+|++|++...++++|..|+.+.+.++.        |+|.+++| ++.+++
T Consensus        64 ~~~dTlgGlil~~lg~iP~~Gd~v~~~g~~--------f~V~~~d~~RI~~V~  108 (113)
T 3ded_A           64 GNIHTLAGVMLYQLGRVPSVTDRFEWNGFS--------FEVVDMDRTRVDKIL  108 (113)
T ss_dssp             TCCCBHHHHHHHHHCSSCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             CCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEeCCeEEEEE
Confidence            568999999999999999999999999998        99999976 444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	6e-15
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	5e-06
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-04
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	9e-12
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	4e-11
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	5e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	7e-10
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	6e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-04
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.004
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-09
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.001
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-09
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	2e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	4e-09
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.003
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	8e-09
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.001
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.002
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	7e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.001
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.003
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	2e-08
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	4e-08
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	9e-05
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	4e-08
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.003
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	6e-08
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	6e-08
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	6e-08
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	3e-07
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.001
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.004
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	6e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	9e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	6e-04
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.003
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	4e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.001
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	6e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.003
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	1e-05
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.004
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	0.004
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	0.001

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 68.3 bits (166), Expect = 6e-15
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
             VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQV 72

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 244
           +++MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 73  KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 21/75 (28%), Positives = 43/75 (57%)

Query: 1   MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEV 60
            +D + +    +  +++T V ++MTR   +V  +    + +  + + + RHLPV+++G+V
Sbjct: 53  ERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKV 112

Query: 61  IALLDIAKCLYDAIA 75
           I LL I   + DAI+
Sbjct: 113 IGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 41/162 (25%)

Query: 20  VSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 76
           V  ++         +  D     A+QKM       L V+++ +++ +L        +   
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 136
                                                                +V  +  
Sbjct: 64  D--------------------------------------KPVKDTQVKEIMTRQVAYVDL 85

Query: 137 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS 178
            +T       + E+R+    V  + K  G+L+  D++   IS
Sbjct: 86  NNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (144), Expect = 9e-12
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 125 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPA 183
           I   + +  +  T  V +A    ++ R+S+  V  E  +   I +  D++     +    
Sbjct: 16  IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 75

Query: 184 DSTL------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 237
                                  +   +   ++ + + +   L VVD    V  +V +  
Sbjct: 76  LDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD 135

Query: 238 ITHAAVATVG 247
           I  A V T G
Sbjct: 136 ILQALVLTGG 145

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 14  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKC 69
             +                        + ++V+ +   L VV E+  V  ++   DI + 
Sbjct: 80  VTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 139

Query: 70  L 70
           L
Sbjct: 140 L 140

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL--TSKDILMRVISQNLPADST 186
           +  V +SP D V    +           +T   +    L        +  + +       
Sbjct: 4   TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFL 63

Query: 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                   +   A     + +A  I+   K   LP+V+ + ++V ++
Sbjct: 64  EEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAII 110

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 70  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 129
           + D      R    G  I        +  G   S     I+ L+E      L  I+ ++ 
Sbjct: 15  VRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRD---IDFLKEEEHDRFLEEIMTKRE 71

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 173
            +V      T+  A + +   +     +  EN +   I+   D+ 
Sbjct: 72  DLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK 116

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 11/155 (7%)

Query: 19  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 78
            V  +M R+ T + S +   + L  + Q K +  P V+               + +    
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-----------PDTNTLLGSI 60

Query: 79  RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 138
              E    +   +    +     +          +                    +    
Sbjct: 61  DRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT 120

Query: 139 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
           ++         L L  A VT   K  G++   +I 
Sbjct: 121 SLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 7   RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL-- 64
           R   RE N+     +  + ++P  ++  T   +              V   G+++ ++  
Sbjct: 92  RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL 151

Query: 65  -DIAK 68
            +I  
Sbjct: 152 AEIQA 156

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.4 bits (130), Expect = 7e-10
 Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
            K++ + P+ +V  A++ M+E  + S VV  ++       +K  ++R +          V
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242
           E++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+
Sbjct: 73  ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS 125

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 38/157 (24%)

Query: 17  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 76
           + P+   MT+    V   T   EA + M++     L V+                     
Sbjct: 4   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-------------------- 43

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 136
                             +          +  I  +        +         ++T + 
Sbjct: 44  ------------------DDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANV 85

Query: 137 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
              +    +KM E R+   ++  E K  GI T  D+L
Sbjct: 86  NTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 122

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 19  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 78
           PV ++MTRN      +T   E L+KM + + +H+ + E G+++ +  ++  L  +  R+E
Sbjct: 71  PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLE 130

Query: 79  RA 80
            A
Sbjct: 131 TA 132

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           ++  MT         T + +A  +M +     L V++ DG+VV       I   
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 60

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 124 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNL 181
           +IP  SK+V    +  V  A   ++   + +A +         G+LT  D +  +     
Sbjct: 18  LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 77

Query: 182 PADSTL--------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD- 226
            A   +                +       C + +  + DA+  +   K   LPV+D + 
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 227 GDVVDVV 233
           G+ + ++
Sbjct: 138 GNTLYIL 144

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 19  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALL---DIAKCLYDA 73
              +   +    +  +    +A+  +++ K   LPV+  E+G  + +L    I K L   
Sbjct: 97  VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF 156

Query: 74  I 74
           I
Sbjct: 157 I 157

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 31/173 (17%)

Query: 15  LEETPVSKVMT-RNPTFVLSDTLAV-EALQKMVQGKFRHLPVV--ENGEVIALLDIAKCL 70
           ++      ++   +   V   +L V +A   +V    R  P+   +    + +L I   +
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 69

Query: 71  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 130
                         K+    +  +E+H   +                             
Sbjct: 70  N-------ILHRYYKSALVQIYELEEHKIETWREVYLQDSF-----------------KP 105

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL 181
           +V ISP  ++  A   ++  ++    V          ILT K IL + +   +
Sbjct: 106 LVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRIL-KFLKLFI 157

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 182
           +  + +   T  V+   + + + R+SS  ++        +  + D+L  +          
Sbjct: 16  QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 75

Query: 183 --ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240
              ++ +            T +  +   +  +   +     VVD  G +V V+ +  I  
Sbjct: 76  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 135

Query: 241 AAV 243
             +
Sbjct: 136 YIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 13/89 (14%), Positives = 36/89 (40%)

Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA 250
           +   N +   + TP++D + ++  G+   +P++D +G +++V +   +       + N  
Sbjct: 14  ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 73

Query: 251 GSNNEAASTMMQKFWDSAMALSPNDDEED 279
             +   A       ++     + ND    
Sbjct: 74  SLSVGEALMRRSDDFEGVYTCTKNDKLST 102

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 32/155 (20%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 79
           ++ +   N       T  ++ +Q + QG+   +P+++    +  +  A  +   I     
Sbjct: 11  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG-- 68

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
                                        I          +L     +   V T +  D 
Sbjct: 69  -----------------------------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDK 99

Query: 140 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 173
           +      + + R+    V  +  +  G+LT  DIL
Sbjct: 100 LSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 17  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 76
              +     R  + V   T    AL+ ++      LPVV+             +      
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD--------SEGNLVGIVDET 54

Query: 77  MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 136
                 +   I  + E         I   +  +   +  +  P+          V+  +P
Sbjct: 55  DLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATP 114

Query: 137 TDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 173
             TV     KM +  +    V+  E    G++   D+L
Sbjct: 115 HMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 15/94 (15%), Positives = 32/94 (34%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 247
           +E             TP+  AL  +     + LPVVD +G++V +VD   +   +     
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRI 65

Query: 248 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNR 281
             +     ++           +     + +  N+
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNK 99

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 186
           +  V  +     +  A K +L     +  V        GI+   D+L       +   + 
Sbjct: 11  QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 70

Query: 187 L-----------------------------VEKVMTPNPECATIDTPIVDALHIMHDGKF 217
           L                             V ++MT +   AT    + +    M     
Sbjct: 71  LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 130

Query: 218 LHLPVVDRDGDVVDVVDVIHITHAAV 243
             LPV+  +GD++ ++    +    V
Sbjct: 131 EQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADSTL 187
           S   T++   TV  A K M E  L   VV  +     G+L+ + I+ R I +N   D   
Sbjct: 11  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 70

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           +  VM         D  + D    + +       VVD  G VV +V +  ++  
Sbjct: 71  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 17/82 (20%), Positives = 29/82 (35%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 247
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++    I    +    
Sbjct: 5   VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 248 NTAGSNNEAASTMMQKFWDSAM 269
                              S  
Sbjct: 65  KPDEVPIRLVMRKPIPKVKSDY 86

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
           K++V++++    +    K M E  + S +V   NKP GI+T +DI+  +      +  T 
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK--SLETK 68

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
            E+ MT +      D+PI  AL +M      HLPVVD  G++  ++ +  IT A
Sbjct: 69  AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 57
          +EE  V + M      V  D    +  + M +     + VV+ 
Sbjct: 1  MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG 43

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 223
           +  +V++ M       T D  + D   +M +     + VV
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV 41

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 187
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 69  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 113

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 37/156 (23%)

Query: 18  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 77
           T    +M    T V        A Q M +     LP+  +                    
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------------- 40

Query: 78  ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 137
                            +      ++  +  I+ L   +   + +     +  +  +   
Sbjct: 41  -----------------DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDAN 83

Query: 138 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
            ++      M E ++    V  E++  GI+T  DI 
Sbjct: 84  ASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA 119

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243
           T    +M     C      +  A   M +     LP+   D  +  ++    I    +
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL 58

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 1   MKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEV 60
            +DI  + +A  L+       ++   +  +V ++    E L  M + + R +PV+    +
Sbjct: 50  DRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRL 109

Query: 61  IALL---DIAKCL 70
           + ++   DIA+ L
Sbjct: 110 VGIVTEADIARHL 122

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQNLPADSTL 187
              ++P   V  A + M   R+S   +       K  GI+T++D+           ++ +
Sbjct: 7   PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----NAPI 61

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHA 241
            E + + +   A + T +  A  I+H+ +   LP+VD  G +       D+  VI   HA
Sbjct: 62  SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA 121

Query: 242 A 242
           A
Sbjct: 122 A 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.1 bits (116), Expect = 4e-08
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+L  +   +  A+   V
Sbjct: 8   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVK-V 66

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243
            +VM  +    +    I +A   M       L V + D +++ V+    I  A +
Sbjct: 67  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 39/154 (25%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 79
           V  VM  +   +       + L+  V+       VV+ G  +                  
Sbjct: 2   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV------------------ 43

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
                                 I      +E + E      +      +  +VTISP  T
Sbjct: 44  ---------------------GIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRAT 82

Query: 140 VLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
           +  A +KM++  +   +V  +++  G++++ DIL
Sbjct: 83  IKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL 116

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLS------SAVVTVENKPRGILTSKDILMRVISQNLP 182
            + V +    TV    + +              VV  + + +G+L+ +D+++        
Sbjct: 9   PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD------ 62

Query: 183 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
              T V ++M P       DT   +   +M D  F  LPVVD +G +V +V V  +   
Sbjct: 63  -PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 120

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 17  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIA 75
            T V+++M     +V +DT   E  + M    F  LPVV E G ++ ++ +     D + 
Sbjct: 64  RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTV----DDVLD 119

Query: 76  RMERAAEKGKAIAAAVEGVE 95
            +E  A +      AV+  +
Sbjct: 120 VLEAEATEDIHKLGAVDVPD 139

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 48.8 bits (115), Expect = 6e-08
 Identities = 20/114 (17%), Positives = 45/114 (39%)

Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
           K   V++  T T+     ++ + R+  AV+T  + P+  +        + +     D   
Sbjct: 8   KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG 67

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
               +  +P       P+  A   M      H+ VV+++G++V V+ +  +   
Sbjct: 68  PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 48.6 bits (115), Expect = 6e-08
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---QNLPADS 185
           ++ V+I    TV  A   +      +  +        ++  ++ L+ VIS     +  D 
Sbjct: 9   TEFVSIVANQTVRSAMYVLKNQADMAETIYY----VYVVDQENHLVGVISLRDLIVNDDD 64

Query: 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 237
           TL+  ++        +     D    + D  FL +PV D D  ++      D++DVI 
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 109 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GI 166
           ++ ++  +   +   ++P   +++    T  V  +   +    + SA +      +  G+
Sbjct: 10  LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGL 69

Query: 167 LTSKDILMRVISQNLPA------------------DSTLVEKVMTPNPECATIDTPIVDA 208
           LT  D +  +      +                  +       + P          ++DA
Sbjct: 70  LTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDA 129

Query: 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240
              M   +   +P++D DG+    + V  +T 
Sbjct: 130 CLAMSKSRARRIPLIDVDGETGSEMIVSVLTQ 161

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-GILTSKDILMRVISQNL------ 181
            K   +     +     ++LE  ++  V    +    G++    +L              
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 71

Query: 182 --------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 72  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 130

Query: 234 DVIHITHA 241
           + + I  A
Sbjct: 131 NSLEILLA 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 25/155 (16%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 79
           V K+++  PT V  DT   E + ++++        V              L   I  M  
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD---------NKLVGMIPVMHL 56

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
                           K  G    G     E +R  M R             V +     
Sbjct: 57  L---------------KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTP 101

Query: 140 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 173
           +  A K M++  +    V  E  +  G L S +IL
Sbjct: 102 LEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------KPRGILTSKDILMRVISQN 180
                +S  D +  A KK+ E  +   +V  E              + S           
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68

Query: 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240
               +T +   MTPNP      +    A++IM    F  LPVVD +   V +V       
Sbjct: 69  YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLL 128

Query: 241 AA 242
             
Sbjct: 129 LY 130

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 228
           +E +M  NP   + +  +  A   +++G    + V +   +
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE 43

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 32/161 (19%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 79
           +  +M +NP  +  +     A +K+ +G    + V        +  +             
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK----IEGLLTTRDLLSTVESY 58

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
                           K   +     +     + + M               VT+  T  
Sbjct: 59  ---------------CKDSCSQGDLYHISTTPIIDYMTPN-----------PVTVYNTSD 92

Query: 140 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQ 179
              A   M+     S  VV + +KP GI+T ++ L  +   
Sbjct: 93  EFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL-LLYKD 132

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 46.0 bits (108), Expect = 6e-07
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENK-PRGILTSKDILMRVISQ-------N 180
               T+  T T+  A   M  L +    +   NK   GI++ +D+L    S        +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240
             A  T + +VM  +         + ++   M   K   LPVV     +V ++       
Sbjct: 70  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVT 128

Query: 241 AAV 243
            A+
Sbjct: 129 IAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 30/160 (18%)

Query: 20  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 79
           V  +MTR+P  +L      +A   M     RH+P+V+  + +  +   + L  A     +
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 80  AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 139
            + +G ++A      E                                 + V +++P   
Sbjct: 64  RSAQGDSLAFETPLFEVMH------------------------------TDVTSVAPQAG 93

Query: 140 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 179
           +  +   M + ++    V  ++   GI+T  D +   I+ 
Sbjct: 94  LKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL 133

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 247
           VE +MT +P        + DA H+M      H+P+VD +  ++ +V    +  A  +++ 
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 248 NTAGSNNEAASTMMQKFW 265
            +A  ++ A  T + +  
Sbjct: 64  RSAQGDSLAFETPLFEVM 81

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 11  RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIA 67
            +    ETP+ +VM  + T V       E+   M + K   LPVV    ++ ++   D  
Sbjct: 68  GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFV 127

Query: 68  KCLYDAIARME 78
               + +   E
Sbjct: 128 TIAINLLELQE 138

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 125 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQN--- 180
           I   S + T S    V    K + E  +S+  +         +  S D++  +   +   
Sbjct: 8   IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 67

Query: 181 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 237
                 ++ L                 +      +   +   L VVD +  +  ++ +  
Sbjct: 68  LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 127

Query: 238 ITHAAV 243
           I +  +
Sbjct: 128 ILNYII 133

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 24  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 79
                    +          +   +   L VV EN ++  +L   DI   +         
Sbjct: 82  NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPG 141

Query: 80  AAEKGKAIAAAV 91
             E+     +AV
Sbjct: 142 VPEQTDNFESAV 153

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 188
              VTI+   T   A +   + ++ S  V  +      + S   ++    +   A     
Sbjct: 9   QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAM---- 64

Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 233
             ++  +      +  +  A  +M +  +  + VVD  G  V ++
Sbjct: 65  --LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL 107

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           V+ +MT NP   T+      AL +    K    PVV+++G +V ++ V  I   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN 56

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD---- 184
           +KV TI     +  A K ML        V  ++     + +    ++ +++ +       
Sbjct: 10  TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDY 69

Query: 185 --STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
               +V+ VM  N         +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 70  FYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 128

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 34/167 (20%)

Query: 19  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 78
           PV   M+     +  +    +A++ M++  FR LPV                       +
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPV---------------------IDD 41

Query: 79  RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 138
                G                 +     + + +++ M              +VTI    
Sbjct: 42  DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTN-----------LVTIDELA 90

Query: 139 TVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD 184
           +V  A  +M+  R+ S  ++  +N  RGI+T +D+L   +   L  +
Sbjct: 91  SVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL-IALHHILVME 136

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
               +  + TV     +M + + +  +V         + +K+ L+ +   +         
Sbjct: 10  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV------F 63

Query: 190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243
             ++        +  I  AL +  + +  +LPVVD +  +   V +     A +
Sbjct: 64  NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241
           V+K +T +         + + LH M   +     V DR+G    VV+   +   
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL 56

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 10  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKC 69
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++     
Sbjct: 92  LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 151

Query: 70  LYDAIARMER 79
           L   IA+M  
Sbjct: 152 L-KHIAQMAN 160

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 18/163 (11%)

Query: 17  ETPVSKVMTRNP------TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 70
           +T    VM                    +    + +  +   PVV + E   L+      
Sbjct: 2   KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61

Query: 71  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 130
              I+      ++   ++ ++    +H           +  LR  +              
Sbjct: 62  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTL-KLRNILDLS----------- 109

Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173
             T++    + +      +L L   +VT   +  GI+T KD+L
Sbjct: 110 PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.88
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.88
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.87
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.87
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.86
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.85
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.85
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.85
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.84
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.84
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.84
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.84
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.84
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.83
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.83
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.83
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.83
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.81
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.81
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.81
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.81
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.8
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.8
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.79
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.78
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.78
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.78
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.78
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.76
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.75
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.75
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.73
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.72
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.7
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.7
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.69
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	97.72
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	97.45
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	97.41
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	97.31
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	97.29
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	97.28
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	97.25
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	97.19
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	97.1
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	97.07
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	96.96
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	95.59
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	85.99

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.88  E-value=1.4e-22  Score=156.22  Aligned_cols=123  Identities=26%  Similarity=0.453  Sum_probs=110.5

Q ss_pred             CccccccC-CCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      +++++|.. .++++++++++++.+|++.|.+++++++||+++|+++|++|.+|+++++...+......+++++|++++.+
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   82 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   82 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccceeEE
Confidence            46667753 24789999999999999999999999999999999999999999985666666666678999999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      +.+++++.++++.|.+++++++||+| +|+++|+||..|++++++
T Consensus        83 v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          83 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             eccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            99999999999999999999999998 699999999999999854

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.88  E-value=6.7e-22  Score=152.41  Aligned_cols=122  Identities=29%  Similarity=0.426  Sum_probs=111.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      ...++++|.+  +++++++++++.+|+++|.+++++++||+++|+++|++|.+|++ +.+..+... ..++.++|.+++.
T Consensus         3 ~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~~   78 (127)
T d2ef7a1           3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASLI   78 (127)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECCC
T ss_pred             ccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHH-HHHHhhccc-cchhhhhhhhhcc
Confidence            4568999984  89999999999999999999999999999999999999999998 655555443 5789999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ++++++++.++++.|.+++++++||+|++|+++|+||..||++++.
T Consensus        79 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999854

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=1.6e-22  Score=154.99  Aligned_cols=120  Identities=17%  Similarity=0.329  Sum_probs=109.3

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  197 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  197 (346)
                      ++++++|++  +++++.+++++.+|++.|.+++++++||++ +|+++|++|.+|++.+++.++.......++++|++++.
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   78 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   78 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccce
Confidence            367889974  789999999999999999999999999998 88999999999998666666666656788999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      ++++++++.++++.|.+++++++||+| +|+++|+||..||+++
T Consensus        79 ~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          79 YVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             eeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            999999999999999999999999999 5899999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=6.8e-22  Score=155.35  Aligned_cols=120  Identities=24%  Similarity=0.296  Sum_probs=111.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      +++++|.+  ++.++++++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+...+......+++++|++++++
T Consensus         4 ~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~   81 (142)
T d1pvma4           4 RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPK   81 (142)
T ss_dssp             BGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCE
T ss_pred             EHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccccc
Confidence            58899985  799999999999999999999999999998 789999999999986666666666677899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      +++++++.++++.|.+++++++||+|++|+++|+||..||+++
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          82 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             EETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             ccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHH
Confidence            9999999999999999999999999999999999999999985

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.8e-21  Score=148.40  Aligned_cols=118  Identities=23%  Similarity=0.245  Sum_probs=107.6

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeec
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECAT  200 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~  200 (346)
                      ++++|++  +++++++++|+.+|++.|.+++++.+||.++|+++|++|.+|++ +.+..+......++.++|++++.+++
T Consensus         2 V~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~-~~l~~~~~~~~~~v~~~m~~~~~~v~   78 (120)
T d1pbja3           2 VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTIS   78 (120)
T ss_dssp             HHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEEC
T ss_pred             hHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecc-ccccccccccceeEeeeccccccccc
Confidence            6788884  88999999999999999999999999999999999999999998 55555555557799999999999999


Q ss_pred             CCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          201 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       201 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++.+|++.|.+++++++||+| +|+++|+||..|++++.
T Consensus        79 ~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          79 PRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            999999999999999999999986 69999999999999873

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.85  E-value=2.1e-21  Score=151.94  Aligned_cols=128  Identities=20%  Similarity=0.301  Sum_probs=106.5

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+|+|+++++++++++|+.+|++.|.+++++++||+| +|+++|++|.+|+++........                 
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~-----------------   64 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR-----------------   64 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC------------------
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhh-----------------
Confidence            589999999999999999999999999999999999998 89999999999998764322110                 


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  176 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~  176 (346)
                                  ...........+++++|.+  ++.++++++++.+|+++|.+++++++||+|+|+++|+||.+|+++.+
T Consensus        65 ------------~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          65 ------------SAQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             --------------------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred             ------------hhcccccccccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHH
Confidence                        0011122345568888974  89999999999999999999999999999999999999999998443

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5.2e-21  Score=148.33  Aligned_cols=126  Identities=24%  Similarity=0.411  Sum_probs=111.3

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      +.+++++|..  +++++++++++.+|++.|.+++++++||+| +|+++|++|..|+++.+... ......+++++|.+++
T Consensus         4 ~~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~-~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           4 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-GLPYDIPVERIMTRNL   80 (132)
T ss_dssp             TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-CCCTTSBGGGTCBCSC
T ss_pred             CCcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc-cCccceeEeecccccc
Confidence            3468999974  899999999999999999999999999999 78999999999998444443 3334679999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~  247 (346)
                      .++++++++.++++.|.+++++++||++ +|+++|+||..|++++...+++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~le  130 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE  130 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCSC
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHc
Confidence            9999999999999999999999999875 7999999999999998766553

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2.3e-21  Score=150.39  Aligned_cols=123  Identities=14%  Similarity=0.146  Sum_probs=108.2

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-----cccccccccc
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-----ADSTLVEKVM  192 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~-----~~~~~v~~~m  192 (346)
                      .+++++|.|..+++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|++ +.+.....     ....+++++|
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~-~~~~~~~~~~~~~~~~~~v~~~m   80 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQITVEEVM   80 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSBHHHHS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhH-HHhhccccccccccccccccccc
Confidence            46889999888999999999999999999999999999998 79999999999998 44443211     1246789999


Q ss_pred             ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          193 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       193 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      .+++.++++++++.+++..|.+++  .+||+|++|+++|+||.+|+++++..
T Consensus        81 ~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          81 LTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             BCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999999998765  59999999999999999999998654

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=6.2e-22  Score=151.70  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=101.3

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+|+|+++++++++++++.+|++.|.+++++++||+| +|+++|++|.+|+++..+.+                    
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~--------------------   60 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA--------------------   60 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG--------------------
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhc--------------------
Confidence            589999999999999999999999999999999999998 78999999999997642110                    


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  173 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll  173 (346)
                        +.              ......++++|.+  +++++++++++.++++.|.+++++++||+++|+++|+||..|++
T Consensus        61 --~~--------------~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil  119 (123)
T d1y5ha3          61 --GL--------------DPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA  119 (123)
T ss_dssp             --TC--------------CTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             --CC--------------CcccceEEEEeec--cceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHH
Confidence              00              0112345667764  78899999999999999999999999999999999999999998

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=3e-21  Score=154.25  Aligned_cols=150  Identities=19%  Similarity=0.236  Sum_probs=106.7

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      +++++++++|.++++++++++|+.+|+++|.+++++++||+| +|+++|++|..|+++...........       ....
T Consensus         1 ~~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~-------~~~~   73 (156)
T d2yzqa1           1 YKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKST-------ELAA   73 (156)
T ss_dssp             GGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             CCCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhccccccccc-------cccc
Confidence            367899999999999999999999999999999999999998 89999999999987532110000000       0000


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                      ..........................++.++|++  ++.++.+++++.++++.|.+++++++||+| +|+++|++|.+|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Di  151 (156)
T d2yzqa1          74 SSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDL  151 (156)
T ss_dssp             -----------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHH
T ss_pred             chhhhhhhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHH
Confidence            0000000000111122223334566789999985  789999999999999999999999999999 8999999999999


Q ss_pred             H
Q 019128          173 L  173 (346)
Q Consensus       173 l  173 (346)
                      +
T Consensus       152 l  152 (156)
T d2yzqa1         152 L  152 (156)
T ss_dssp             G
T ss_pred             H
Confidence            8

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.84  E-value=9.5e-21  Score=148.19  Aligned_cols=123  Identities=19%  Similarity=0.202  Sum_probs=107.9

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC--------CCcccccccc
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN--------LPADSTLVEK  190 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~--------~~~~~~~v~~  190 (346)
                      +++++|++  +++++++++++.+|++.|.+++++++||+| +|+++|++|.+|++ ++....        ......++++
T Consensus         3 ~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~-~~~~~~~~~~~~~~~~~~~~~v~~   79 (139)
T d2o16a3           3 KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL-AAQESSLQRSAQGDSLAFETPLFE   79 (139)
T ss_dssp             BGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHHHCC---------CCCBHHH
T ss_pred             EHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHH-HHHHhhhhhhhcccccccccchhH
Confidence            58899985  789999999999999999999999999999 89999999999998 443221        1122568999


Q ss_pred             ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       191 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      +|++++.++++++++.++++.|.+++++++||+| +|+++|+||..||++++...+
T Consensus        80 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3          80 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHH
T ss_pred             hhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 589999999999999876554

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.84  E-value=1.1e-20  Score=145.36  Aligned_cols=122  Identities=16%  Similarity=0.224  Sum_probs=106.6

Q ss_pred             CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      +++.+|+++|+++++++++++|+.+|+++|.+++++.+||+|+|+++|++|..|+++.+..                   
T Consensus         1 l~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~-------------------   61 (127)
T d2ef7a1           1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK-------------------   61 (127)
T ss_dssp             CCCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT-------------------
T ss_pred             CCccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHh-------------------
Confidence            3578999999999999999999999999999999999999999999999999999875321                   


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                         ......++.++|.+  ++.++++++++.++++.|.+++.+++||++ +|+++|++|..|++
T Consensus        62 -------------------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll  120 (127)
T d2ef7a1          62 -------------------GKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT  120 (127)
T ss_dssp             -------------------TCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             -------------------hccccchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHH
Confidence                               01123457788874  788999999999999999999999999998 89999999999998


Q ss_pred             HHHH
Q 019128          174 MRVI  177 (346)
Q Consensus       174 ~~~~  177 (346)
                       +.+
T Consensus       121 -~~i  123 (127)
T d2ef7a1         121 -RAI  123 (127)
T ss_dssp             -HHH
T ss_pred             -HHH
Confidence             544

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=9.7e-21  Score=144.25  Aligned_cols=117  Identities=20%  Similarity=0.251  Sum_probs=103.3

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhcc
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW   98 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (346)
                      +|+|+|+++++++++++|+.+|++.|.+++++.+||.++|+++|++|.+|+++.+...                      
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~----------------------   58 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   58 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccccc----------------------
Confidence            5789999999999999999999999999999999999999999999999998764211                      


Q ss_pred             CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHH
Q 019128           99 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM  174 (346)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~  174 (346)
                                     ......++.++|.+  ++.++++++++.+|++.|.+++.+++||+++|+++|++|..|+++
T Consensus        59 ---------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~  117 (120)
T d1pbja3          59 ---------------DDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILR  117 (120)
T ss_dssp             ---------------CCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             ---------------ccccceeEeeeccc--ccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHh
Confidence                           01223457788864  789999999999999999999999999999999999999999984

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=2.5e-20  Score=144.43  Aligned_cols=123  Identities=21%  Similarity=0.286  Sum_probs=106.5

Q ss_pred             cccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        17 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      +.+|+++|+++++++++++|+.+|++.|.+++++++||+| +|+++|++|..|+++....+                   
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~-------------------   64 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-------------------   64 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-------------------
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc-------------------
Confidence            4589999999999999999999999999999999999999 78999999999998752210                   


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  175 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~  175 (346)
                                        ......+++++|.+  ++.++.+++++.++++.|.+++++++||.++|+++|++|.+|++ +
T Consensus        65 ------------------~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil-~  123 (132)
T d2yzia1          65 ------------------GLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL-E  123 (132)
T ss_dssp             ------------------CCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-H
T ss_pred             ------------------cCccceeEeecccc--cccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH-H
Confidence                              01123468899974  78999999999999999999999999998899999999999999 5


Q ss_pred             HHhc
Q 019128          176 VISQ  179 (346)
Q Consensus       176 ~~~~  179 (346)
                      .+.+
T Consensus       124 a~~~  127 (132)
T d2yzia1         124 ASRR  127 (132)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            4443

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=6.1e-21  Score=149.75  Aligned_cols=125  Identities=18%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-----CCCccccccccccc
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-----NLPADSTLVEKVMT  193 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~-----~~~~~~~~v~~~m~  193 (346)
                      +++++|++  +++++++++|+.+|++.|.+++++++||++ +++++|+++..|+++.+...     .......+++++|+
T Consensus         3 ~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~   80 (141)
T d3ddja1           3 PVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV   80 (141)
T ss_dssp             BHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred             eeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhC
Confidence            57889986  799999999999999999999999999999 88999999999997333211     11112568999999


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      ++++++++++++.++++.|.+++++++||+|++|+++|+||.+||++++.+.+
T Consensus        81 ~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          81 TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999876544

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=1e-20  Score=145.67  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             ccccccc---CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128           19 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE   95 (346)
Q Consensus        19 ~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
                      +|+|+|.   ++++++++++|+.+|+++|.+++++++||+++|+++|++|.+|+++.....                   
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~-------------------   63 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   63 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhh-------------------
Confidence            6889997   489999999999999999999999999999999999999999997652100                   


Q ss_pred             hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHH
Q 019128           96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  175 (346)
Q Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~  175 (346)
                         +              ......+++++|.+  ++.++.+++++.++++.|.+++++++||+|+|+++|+||..|+++.
T Consensus        64 ---~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          64 ---D--------------KPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             ---S--------------SCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---c--------------ccccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHH
Confidence               0              00122457888874  7899999999999999999999999999999999999999999955


Q ss_pred             HH
Q 019128          176 VI  177 (346)
Q Consensus       176 ~~  177 (346)
                      ++
T Consensus       125 ~i  126 (127)
T d2rc3a1         125 AI  126 (127)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=2.7e-20  Score=143.11  Aligned_cols=114  Identities=22%  Similarity=0.325  Sum_probs=103.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +++.+|.+  +++++++++|+.+|++.|.+++     ++.+||+| +++++|+++.++++ .      .....++.++|+
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~-~------~~~~~~v~~im~   72 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-V------NDDDTLIADILN   72 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-T------SCTTSBHHHHSB
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccc-c------ccccEEhhhhcc
Confidence            46778874  8999999999999999998874     68999999 89999999999986 1      122678999999


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      ++++++++++++.+|++.|.+++++++||||++|+++|+||..||++.+
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=4.9e-20  Score=140.51  Aligned_cols=118  Identities=17%  Similarity=0.225  Sum_probs=107.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      +++++|.+  +++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ ++     . ...++.++|.+++.+
T Consensus         2 ~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~-~~-----~-~~~~v~~~~~~~~~~   72 (121)
T d1vr9a3           2 KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-DL-----D-LDSSVFNKVSLPDFF   72 (121)
T ss_dssp             BGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-TS-----C-TTSBSGGGCBCTTCC
T ss_pred             CchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhh-hh-----h-ccccccccccCccEE
Confidence            46788874  889999999999999999999999999998 89999999999996 22     1 256899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                      +++++++.++++.|.+++..++||+|++|+++|+||..|+++++..++
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          73 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             ECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999877654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=4e-21  Score=146.83  Aligned_cols=115  Identities=30%  Similarity=0.427  Sum_probs=86.3

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+++|+++++++++++|+.+|+++|.+++++++||+| +|+++|+||.+|++..                        
T Consensus         1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~------------------------   56 (122)
T d2yzqa2           1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN------------------------   56 (122)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------------------
T ss_pred             CCcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh------------------------
Confidence            578999999999999999999999999999999999998 7999999999998653                        


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  175 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~  175 (346)
                                         .....+.++|.+  +++++++++++.++++.|.+++++++||+| +|+++|++|.+|++++
T Consensus        57 -------------------~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          57 -------------------PDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             --------------------------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             -------------------hcccchhhcccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence                               112346777774  788999999999999999999999999999 8999999999999855


Q ss_pred             HH
Q 019128          176 VI  177 (346)
Q Consensus       176 ~~  177 (346)
                      ++
T Consensus       116 ~~  117 (122)
T d2yzqa2         116 YF  117 (122)
T ss_dssp             TT
T ss_pred             HH
Confidence            44

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=3.4e-21  Score=147.24  Aligned_cols=116  Identities=23%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  198 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  198 (346)
                      +++++|++  +++++++++++.+|++.|.+++++++||+| +|+++|+||.+|++ ...      ...++.++|.+++++
T Consensus         2 ~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~-~~~------~~~~~~~~~~~~~~~   72 (122)
T d2yzqa2           2 RVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-VNP------DEEQLAMLVKRDVPV   72 (122)
T ss_dssp             BHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCE
T ss_pred             CcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhh-hhh------cccchhhccccceee
Confidence            46788875  788999999999999999999999999999 89999999999997 321      245789999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128          199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  244 (346)
Q Consensus       199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~  244 (346)
                      +++++++.++++.|.+++++++||+|++|+++|+||..||+++.+.
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          73 VKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             cchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999987543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.81  E-value=1.6e-19  Score=144.51  Aligned_cols=148  Identities=16%  Similarity=0.127  Sum_probs=112.3

Q ss_pred             CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-C--CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhh
Q 019128           13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N--GEVIALLDIAKCLYDAIARMERAAEKGKAIAA   89 (346)
Q Consensus        13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~--~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~   89 (346)
                      .+..+++|+|+|+++++++++++|+.+|+++|.+++++++||+| +  +.++|+++..|+++.+.........       
T Consensus         6 ~~~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~-------   78 (160)
T d2d4za3           6 ANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRR-------   78 (160)
T ss_dssp             CCCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSS-------
T ss_pred             CCccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccc-------
Confidence            34568899999999999999999999999999999999999997 2  6899999999998875433211000       


Q ss_pred             hhhhhhhccCCCCCChhhHH--HHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEe
Q 019128           90 AVEGVEKHWGTSISGPNTFI--ETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL  167 (346)
Q Consensus        90 ~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Gii  167 (346)
                             .............  ...........+.++|.+  .++++.+++++.+++++|.+++++++||+++|+++|+|
T Consensus        79 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiI  149 (160)
T d2d4za3          79 -------QPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVV  149 (160)
T ss_dssp             -------SCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred             -------cchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEE
Confidence                   0000111111111  111222334456778874  78999999999999999999999999999999999999


Q ss_pred             eHHHHHHHHH
Q 019128          168 TSKDILMRVI  177 (346)
Q Consensus       168 t~~dll~~~~  177 (346)
                      |.+|++ +++
T Consensus       150 t~~Di~-k~I  158 (160)
T d2d4za3         150 ALAEIQ-AAI  158 (160)
T ss_dssp             EHHHHH-HHH
T ss_pred             EHHHHH-HHh
Confidence            999998 544

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=3.5e-20  Score=145.70  Aligned_cols=115  Identities=22%  Similarity=0.303  Sum_probs=103.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  193 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  193 (346)
                      +++++|++  +++++++++|+.+|++.|.+++     +..+||++ +|+++|+++.+|+. .     . ....++.++|+
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~-~-----~-~~~~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-V-----A-DPRTRVAEIMN   72 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHT-T-----S-CTTCBSTTTSB
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhh-h-----c-ccccchHHhcc
Confidence            57889985  8999999999999999998774     67899999 89999999999996 2     1 12578999999


Q ss_pred             cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ++++++++++++.+|++.|.+++++++||||++|+++|+||..||++++.
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998643

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.9e-20  Score=149.48  Aligned_cols=122  Identities=18%  Similarity=0.184  Sum_probs=105.3

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc------------------
Q 019128          119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ------------------  179 (346)
Q Consensus       119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~------------------  179 (346)
                      .++.++|.  ++++++.+++++.+|++.|.+++++++||+| +|+++|++|..|++......                  
T Consensus         4 ~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           4 VEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             CBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            46888997  4899999999999999999999999999998 89999999999986211110                  


Q ss_pred             -----------CCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          180 -----------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       180 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                                 .......++.++|++++.++++++++.++++.|.+++++++||+|++|+++|+||++||++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                       011124588999999999999999999999999999999999999999999999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.81  E-value=1.3e-19  Score=139.04  Aligned_cols=108  Identities=22%  Similarity=0.364  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHH
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV  206 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~  206 (346)
                      +++++++++++.+|+++|.+++++++||+|   +++++|++|.+|++ ......    ......+|..+++++++++++.
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~   80 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FISDYN----APISEHMTSEHLVTAAVGTDLE   80 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HCSCSS----SBTTTSCCCSCCCCEETTCCHH
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHH-HhhccC----CceeeeeeccceeecCCCCCHH
Confidence            578999999999999999999999999998   57899999999997 432221    2234455677889999999999


Q ss_pred             HHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128          207 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  242 (346)
Q Consensus       207 ~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~  242 (346)
                      +++++|.+++++++||||++|+++|+||+.||+++.
T Consensus        81 ~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          81 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            999999999999999999999999999999999973

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.81  E-value=1.3e-19  Score=144.05  Aligned_cols=125  Identities=14%  Similarity=0.157  Sum_probs=104.3

Q ss_pred             ccccccC-CCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCcccccccccc-----
Q 019128          121 LSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVM-----  192 (346)
Q Consensus       121 v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~v~~~m-----  192 (346)
                      +++++.. .++++++.+++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+.. .......++.++|     
T Consensus         3 l~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~-~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVM-HLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             GGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHH-HHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             HHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeee-ehhccccccccccchhhheeeeec
Confidence            4555542 35799999999999999999999999999999 88999999999997 54443 3222345565555     


Q ss_pred             -ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128          193 -TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       193 -~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i  246 (346)
                       ..+++++++++++.++++.|.+++++++||||++|+++|+||+.|++++++...
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~  136 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  136 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCT
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCc
Confidence             356789999999999999999999999999999999999999999999876543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=6.8e-20  Score=143.66  Aligned_cols=125  Identities=21%  Similarity=0.417  Sum_probs=106.1

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      .+|+++|+++++++++++|+.+|+++|.+++++++||+| +++++|+++..|+++.+........               
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~---------------   66 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLD---------------   66 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTC---------------
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccc---------------
Confidence            579999999999999999999999999999999999999 7899999999999876543221100               


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  175 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~  175 (346)
                                      .......+++++|.+  +++++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+++.
T Consensus        67 ----------------~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          67 ----------------PDYFYGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             ----------------THHHHTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ----------------cccccCCCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHH
Confidence                            011234567888874  788999999999999999999999999998 8999999999999843

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.5e-19  Score=140.22  Aligned_cols=124  Identities=15%  Similarity=0.148  Sum_probs=97.2

Q ss_pred             CCcccc-ccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-Ccccccc------c
Q 019128          119 PSLSTI-IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLV------E  189 (346)
Q Consensus       119 ~~v~~i-m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~-~~~~~~v------~  189 (346)
                      .++.++ +....+++++.+++++.+|++.|.+++++++||++ +|+++|++|..|++ +++.... ......+      .
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~-~~~~~~~~~~~~~~~~~~~~~~   84 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGEALMRR   84 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHTC----CCSBHHHHHHHC
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHH-HHHhhccccccccchhhhhhhh
Confidence            445554 22236899999999999999999999999999999 88999999999998 4444332 2112222      2


Q ss_pred             cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       190 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      ..+..+++++++++++.++++.|.+++++++||||++|+++|+||.+||+++++
T Consensus        85 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          85 SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             C------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            344567899999999999999999999999999999999999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.9e-19  Score=137.22  Aligned_cols=115  Identities=19%  Similarity=0.154  Sum_probs=102.6

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+++|++++.++++++|+.+|++.|.+++++++||+| +|+++|+++..|+++.                        
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~------------------------   56 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL------------------------   56 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS------------------------
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh------------------------
Confidence            578999999999999999999999999999999999998 8999999999998542                        


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  175 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~  175 (346)
                                         ....++.++|..  +++++++++++.++++.|.+++..++||++ +|+++|+||..|+++.
T Consensus        57 -------------------~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~  115 (121)
T d1vr9a3          57 -------------------DLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEA  115 (121)
T ss_dssp             -------------------CTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             -------------------hccccccccccC--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHH
Confidence                               123457888874  778899999999999999999999999999 8999999999999844


Q ss_pred             HH
Q 019128          176 VI  177 (346)
Q Consensus       176 ~~  177 (346)
                      +.
T Consensus       116 l~  117 (121)
T d1vr9a3         116 LI  117 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=7.4e-20  Score=140.61  Aligned_cols=114  Identities=16%  Similarity=0.259  Sum_probs=100.2

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhC-----Ccceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~-----~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      +++.+|+++++++++++|+.+|++.|.++     +++++||+| +|+++|+++..+++..                    
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~--------------------   61 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------------   61 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------------
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc--------------------
Confidence            68899999999999999999999999876     478999999 8999999999887532                    


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                                             ....++.++|.+  +++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~D  116 (127)
T d2ouxa2          62 -----------------------DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  116 (127)
T ss_dssp             -----------------------CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             -----------------------cccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHH
Confidence                                   123457888874  788999999999999999999999999998 899999999999


Q ss_pred             HHHHHHh
Q 019128          172 ILMRVIS  178 (346)
Q Consensus       172 ll~~~~~  178 (346)
                      ++ .++.
T Consensus       117 il-~~i~  122 (127)
T d2ouxa2         117 II-DVID  122 (127)
T ss_dssp             HH-HHHH
T ss_pred             HH-HHHH
Confidence            98 5543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=8.2e-20  Score=143.27  Aligned_cols=118  Identities=20%  Similarity=0.215  Sum_probs=103.5

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK   96 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (346)
                      ++|+|+|+++++++++++|+.+|++.|.+++++.+||+| +|+++|++|..|+++.+...                    
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~--------------------   62 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR--------------------   62 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG--------------------
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhh--------------------
Confidence            689999999999999999999999999999999999998 79999999999998753210                    


Q ss_pred             ccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           97 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                        +              ......+++++|..  +++++.+++++.++++.|.+++.+++||+| +|+++|++|..|++
T Consensus        63 --~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil  122 (142)
T d1pvma4          63 --N--------------KKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS  122 (142)
T ss_dssp             --C--------------CCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHT
T ss_pred             --c--------------cccccccccccccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHH
Confidence              0              00123457888874  789999999999999999999999999999 88999999999998

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.4e-19  Score=144.87  Aligned_cols=131  Identities=18%  Similarity=0.169  Sum_probs=109.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcC----CCc------
Q 019128          116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQN----LPA------  183 (346)
Q Consensus       116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~----~~~------  183 (346)
                      +...++.|+|.+..++++++.++++.+|++.|.+++++++||++  +++++|++|.+|++..+....    ...      
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            44567999998777899999999999999999999999999998  689999999999983332210    000      


Q ss_pred             ----cccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEc-CCCcEEEEEehHHHHHHHHHHc
Q 019128          184 ----DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHAAVATV  246 (346)
Q Consensus       184 ----~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~~Giit~~Di~~~~~~~i  246 (346)
                          ......++|.++++++++++++.+++++|.+++++++||+| ++|+++|+||.+||++++...+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2          90 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             hcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence                01234578888999999999999999999999999999998 5789999999999999876655

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.79  E-value=4.8e-19  Score=136.92  Aligned_cols=117  Identities=21%  Similarity=0.348  Sum_probs=102.2

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  196 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  196 (346)
                      +++++|.+  +++++++++++.+|++.|.+++++++||++   +++++|+++..|+. +.+..+...  ......+..++
T Consensus         2 ~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~-~~~~~~~~~--~~~~~~~~~~~   76 (131)
T d2riha1           2 RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL--DGPAMPIANSP   76 (131)
T ss_dssp             BGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT--TSBSGGGCBCC
T ss_pred             CHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccc-ccccccccc--ccccccccccc
Confidence            57899974  789999999999999999999999999994   57899999999998 555544332  23445566888


Q ss_pred             eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      .++.+++++.+++++|.+++++++||+|++|+++|+||..||+++
T Consensus        77 ~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          77 ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             eeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999999999999975

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=1.7e-19  Score=140.23  Aligned_cols=118  Identities=26%  Similarity=0.323  Sum_probs=104.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------ccccccc
Q 019128          120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVE  189 (346)
Q Consensus       120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~  189 (346)
                      +++++|.+  +++++++++++.+|++.|.+++++++||+| ++++|+++..|++ +++.....          ....+++
T Consensus         2 ~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-~~lvg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~   77 (135)
T d3ddja2           2 NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLL-STVESYCKDSCSQGDLYHISTTPII   77 (135)
T ss_dssp             SGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHH-GGGTTCC---CCHHHHHHHHTSBGG
T ss_pred             EeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEe-cceeceeeccchh-hhhccccccchhhhhccccccCCHH
Confidence            57899985  788999999999999999999999999996 4699999999997 44332211          1256899


Q ss_pred             cccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          190 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       190 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      ++|++++.++++++++.+|++.|.+++++++||+|++|+++|+||.+|++++
T Consensus        78 ~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~  129 (135)
T d3ddja2          78 DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL  129 (135)
T ss_dssp             GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGG
T ss_pred             HHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999985

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=4.3e-19  Score=139.69  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=103.9

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      .+.++|+++|+++++++|+.+|++.|.+++++++||+| +|+++|++|..|+++...........               
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~---------------   69 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP---------------   69 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC---------------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc---------------
Confidence            56778999999999999999999999999999999998 89999999999998865432211000               


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                             ...........+...++.++|.   +++++.+++++.+|++.|.+++.+++||+| +|+++|+||.+|++ ++
T Consensus        70 -------~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil-~~  138 (145)
T d1o50a3          70 -------KEELIRSSMKRLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL-LA  138 (145)
T ss_dssp             --------------CCCCCSSCBHHHHCB---CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HH
T ss_pred             -------hhHHHHhhhhhccccCHHHHcC---CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHH-HH
Confidence                   0000000001123344566665   478899999999999999999999999998 89999999999999 55


Q ss_pred             Hhc
Q 019128          177 ISQ  179 (346)
Q Consensus       177 ~~~  179 (346)
                      +..
T Consensus       139 l~~  141 (145)
T d1o50a3         139 LWK  141 (145)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.78  E-value=2.7e-19  Score=146.06  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             HHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhc----CCC
Q 019128          109 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ----NLP  182 (346)
Q Consensus       109 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~----~~~  182 (346)
                      .+.+..++...++.|+|.+..++++++++.++.+|++.|.+++++++||+|  +++++|++|..|++..+...    ...
T Consensus        10 ~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~   89 (179)
T d2ooxe1          10 LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFP   89 (179)
T ss_dssp             HHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCG
T ss_pred             HHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccch
Confidence            445666667778999999877899999999999999999999999999998  47999999999998433321    100


Q ss_pred             c--------------cccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCC-----cEEEEEehHHHHHHHH
Q 019128          183 A--------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG-----DVVDVVDVIHITHAAV  243 (346)
Q Consensus       183 ~--------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-----~~~Giit~~Di~~~~~  243 (346)
                      .              ........|.++++++++++++.+++..|.+++++++||+|++|     +++|+||.+||++++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1          90 EAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             GGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            0              01123456788999999999999999999999999999999765     6999999999999987


Q ss_pred             HHccC
Q 019128          244 ATVGN  248 (346)
Q Consensus       244 ~~i~~  248 (346)
                      ..+.+
T Consensus       170 ~~~~~  174 (179)
T d2ooxe1         170 MNCKE  174 (179)
T ss_dssp             TTCGG
T ss_pred             HhhhH
Confidence            77654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.3e-19  Score=142.45  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=100.4

Q ss_pred             cccccccCCCeeecCCccHHHHHHHHHhCC-----cceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~-----~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      +|+.+|+++++++++++|+.+|++.|.+++     ++.+||+| +|+++|+++.+|+...                    
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~--------------------   61 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------------   61 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS--------------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc--------------------
Confidence            689999999999999999999999998774     78999999 7999999999998542                    


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                                             ....++.++|.+  +++++.+++++.+|++.|.+++++++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          62 -----------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             -----------------------CTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             -----------------------ccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence                                   123467888884  788999999999999999999999999999 799999999999


Q ss_pred             HHHHHH
Q 019128          172 ILMRVI  177 (346)
Q Consensus       172 ll~~~~  177 (346)
                      ++ +++
T Consensus       117 il-~~l  121 (144)
T d2yvxa2         117 VL-DVL  121 (144)
T ss_dssp             HH-HHH
T ss_pred             HH-HHH
Confidence            98 444

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.1e-18  Score=135.71  Aligned_cols=122  Identities=21%  Similarity=0.317  Sum_probs=101.9

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc--------------CCCccc
Q 019128          121 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ--------------NLPADS  185 (346)
Q Consensus       121 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~--------------~~~~~~  185 (346)
                      +.++|.  .+++++.+++++.+|++.|.+++++++||+| +|+++|++|..|++......              ......
T Consensus         6 v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (145)
T d1o50a3           6 VCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   83 (145)
T ss_dssp             HTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             hHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccc
Confidence            556676  4789999999999999999999999999999 89999999999997332211              011123


Q ss_pred             cccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHH
Q 019128          186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  245 (346)
Q Consensus       186 ~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~  245 (346)
                      .+++++| .+++++++++++.+|++.|.+++++++||||++|+++|+||..||++++...
T Consensus        84 ~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          84 KNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             CBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            4556666 5678999999999999999999999999999999999999999999986543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=2.3e-19  Score=139.53  Aligned_cols=130  Identities=18%  Similarity=0.245  Sum_probs=105.5

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH   97 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
                      ++|+++|+++++++++++|+.+|++.|.+++++++||+|+ +++|+++..++++.+.....                   
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~-------------------   60 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCK-------------------   60 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC--------------------
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhccccc-------------------
Confidence            5799999999999999999999999999999999999974 69999999998765321000                   


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128           98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                              ..............+++++|.+  +++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|++ ++
T Consensus        61 --------~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil-~~  129 (135)
T d3ddja2          61 --------DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL-LL  129 (135)
T ss_dssp             ----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHG-GG
T ss_pred             --------cchhhhhccccccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHH-HH
Confidence                    0000111222334678999985  888999999999999999999999999998 89999999999998 54


Q ss_pred             Hh
Q 019128          177 IS  178 (346)
Q Consensus       177 ~~  178 (346)
                      +.
T Consensus       130 ~~  131 (135)
T d3ddja2         130 YK  131 (135)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.78  E-value=8e-19  Score=140.39  Aligned_cols=123  Identities=14%  Similarity=0.049  Sum_probs=104.7

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhc---C-----------
Q 019128          118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQ---N-----------  180 (346)
Q Consensus       118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~---~-----------  180 (346)
                      ..+++++|++  +++++++++++.++++.|.+++++++||++   ++.++|+++..|++..+...   .           
T Consensus        10 ~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~   87 (160)
T d2d4za3          10 NIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL   87 (160)
T ss_dssp             SCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred             ceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcccc
Confidence            3578999985  899999999999999999999999999998   36899999999997333221   0           


Q ss_pred             ----------CCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          181 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       181 ----------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                                .......+.++|.++++++++++++.++++.|.+++++++||+| +|+++|+||++||++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          88 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             chhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                      01113446678999999999999999999999999999999998 699999999999999864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.2e-18  Score=137.09  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCccccc------cccccccCCeeec
Q 019128          129 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTL------VEKVMTPNPECAT  200 (346)
Q Consensus       129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~------v~~~m~~~~~~v~  200 (346)
                      ++++++.+++++.+|++.|.+++++++||++ +|+++|++|..|++ ..+... ......+      ....|..+++++.
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~-~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~   98 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI-NLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY   98 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTG-GGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEEC
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhh-hhhhcccccchhhhhhhccchhhhccCCCeEEC
Confidence            4689999999999999999999999999999 88999999999997 444432 2222222      3345667889999


Q ss_pred             CCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128          201 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  243 (346)
Q Consensus       201 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~  243 (346)
                      +++++.++++.|.+++++++||+|++|+++|+||.+||+++++
T Consensus        99 ~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          99 LHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999999999865

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=3.2e-18  Score=131.20  Aligned_cols=112  Identities=20%  Similarity=0.304  Sum_probs=92.9

Q ss_pred             cccCCCeeecCCccHHHHHHHHHhCCcceeeeee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccC
Q 019128           23 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG   99 (346)
Q Consensus        23 im~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   99 (346)
                      -|..+|+++++++|+.+|+++|.+++++++||+|   +|+++|+||.+|+.+..                          
T Consensus         2 gmi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~--------------------------   55 (126)
T d1zfja4           2 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--------------------------   55 (126)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------------
T ss_pred             CCEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh--------------------------
Confidence            3777899999999999999999999999999998   47899999999986531                          


Q ss_pred             CCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHh
Q 019128          100 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  178 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~  178 (346)
                                      .........|.. .+++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|++ +...
T Consensus        56 ----------------~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil-~~~~  117 (126)
T d1zfja4          56 ----------------DYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE-KVIE  117 (126)
T ss_dssp             ----------------CSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHH-HHHH
T ss_pred             ----------------ccCCceeeeeec-cceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHH-HHhh
Confidence                            011122233332 4678899999999999999999999999998 89999999999998 4443

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.76  E-value=4.1e-18  Score=131.61  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=96.7

Q ss_pred             ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      ++|+|+|+++++++++++|+.+|++.|.+++++++||++   +++++|+++..|+++.+...                  
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~------------------   62 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR------------------   62 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT------------------
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc------------------
Confidence            479999999999999999999999999999999999994   48899999999997653210                  


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                           .........+.  .+++++.+++++.++++.|.+++++++||+| +|+++|+||..|++
T Consensus        63 ---------------------~~~~~~~~~~~--~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll  119 (131)
T d2riha1          63 ---------------------LDLDGPAMPIA--NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC  119 (131)
T ss_dssp             ---------------------CCTTSBSGGGC--BCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             ---------------------ccccccccccc--ccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHH
Confidence                                 01111222222  3577899999999999999999999999998 88999999999998

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=2.9e-19  Score=138.36  Aligned_cols=124  Identities=14%  Similarity=0.192  Sum_probs=101.4

Q ss_pred             ccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128           17 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG   93 (346)
Q Consensus        17 ~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~   93 (346)
                      +.+|+++|.  ++++++++++|+.+|++.|.+++++++||+| +|+++|+++..|+++++.....               
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~---------------   65 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER---------------   65 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS---------------
T ss_pred             CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccc---------------
Confidence            368999995  6899999999999999999999999999998 7999999999999876421100               


Q ss_pred             hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128           94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  172 (346)
Q Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl  172 (346)
                            .           ..+.....+++++|.+  ++.++.+++++.+++..|.+++  .+||+| +|+++|+||.+|+
T Consensus        66 ------~-----------~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~di  124 (132)
T d1yava3          66 ------I-----------EFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVV  124 (132)
T ss_dssp             ------B-----------CGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHH
T ss_pred             ------c-----------cccccccccccccccc--cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHH
Confidence                  0           0011334567788874  7889999999999999998764  599998 8999999999999


Q ss_pred             HHHHH
Q 019128          173 LMRVI  177 (346)
Q Consensus       173 l~~~~  177 (346)
                      + +.+
T Consensus       125 l-~~l  128 (132)
T d1yava3         125 L-KEL  128 (132)
T ss_dssp             H-HHH
T ss_pred             H-HHH
Confidence            8 444

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.6e-18  Score=135.97  Aligned_cols=127  Identities=13%  Similarity=0.163  Sum_probs=103.6

Q ss_pred             CccccccCCCc----eeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhc-------------
Q 019128          120 SLSTIIPEKSK----VVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQ-------------  179 (346)
Q Consensus       120 ~v~~im~~~~~----~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~-------------  179 (346)
                      .++|+|.|...    .+.+.++.|+.++.++|.+++++++||++   +++++|++|.+|++..+...             
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~   83 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   83 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhh
Confidence            46788887432    24567888999999999999999999994   67899999999998433211             


Q ss_pred             ----------CCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128          180 ----------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  247 (346)
Q Consensus       180 ----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~  247 (346)
                                .......+++++|.++++++++++++.++++.|.+++.+++||+| +|+++|+||+.||++++...-.
T Consensus        84 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~~  160 (169)
T d2j9la1          84 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN  160 (169)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC
T ss_pred             hhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHhc
Confidence                      011123568899999999999999999999999999999999987 7999999999999998766543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=7.4e-20  Score=139.16  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=59.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe----CCEEEEEeeHHHHHHHHHhcCCCcccccccccc--ccCCeeecCCC
Q 019128          130 KVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVM--TPNPECATIDT  203 (346)
Q Consensus       130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d----~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m--~~~~~~v~~~~  203 (346)
                      +++++++++++.+|+++|.+++++++||++    +++++|++|.+|+. .......   ..++..+|  .++++++++++
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~-~~~~~~~---~~~~~~~~~~~~~~~~v~~~~   80 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID-FLKEEEH---DRFLEEIMTKREDLVVAPAGI   80 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETTC
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee-ehhcccc---CceeEEEEeeccCceEECCCC
Confidence            578999999999999999999999999997    46899999999985 4433332   34555555  34689999999


Q ss_pred             CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128          204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  241 (346)
Q Consensus       204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~  241 (346)
                      ++.+|++.|.+++++++||||++|+++|+||+.||+++
T Consensus        81 ~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          81 TLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             CHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             CHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            99999999999999999999999999999999999985

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4.7e-18  Score=135.77  Aligned_cols=139  Identities=15%  Similarity=0.146  Sum_probs=104.1

Q ss_pred             CCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           15 LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        15 ~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      +...+++|+|.  .+++++++++|+.+|++.|.+++++++||++  +++++|+++..|++................    
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~----   85 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYE----   85 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCC----
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhh----
Confidence            35679999995  5679999999999999999999999999997  489999999999988765432211110000    


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEee
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILT  168 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit  168 (346)
                                  ....... ...     ....++|.  .+++++++++++.++++.|.+++.+++||+|  +|+++|+||
T Consensus        86 ------------~~~~~~~-~~~-----~~~~~~~~--~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT  145 (159)
T d2v8qe2          86 ------------LEEHKIE-TWR-----EVYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILT  145 (159)
T ss_dssp             ------------GGGCBHH-HHH-----HHHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEEC
T ss_pred             ------------hhhhhcc-ccc-----ceeeeeec--cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEe
Confidence                        0000000 000     11344555  3789999999999999999999999999997  579999999


Q ss_pred             HHHHHHHHHh
Q 019128          169 SKDILMRVIS  178 (346)
Q Consensus       169 ~~dll~~~~~  178 (346)
                      .+|++ +++.
T Consensus       146 ~~dil-k~l~  154 (159)
T d2v8qe2         146 HKRIL-KFLK  154 (159)
T ss_dssp             HHHHH-HHHH
T ss_pred             HHHHH-HHHH
Confidence            99999 5543

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.2e-17  Score=128.90  Aligned_cols=122  Identities=19%  Similarity=0.199  Sum_probs=92.4

Q ss_pred             cccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCC
Q 019128           23 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  101 (346)
Q Consensus        23 im~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  101 (346)
                      +|.++++++++++|+.+|++.|.+++++++||+| +|+++|++|..|+++.+.........                   
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~-------------------   74 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLS-------------------   74 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CC-------------------
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccc-------------------
Confidence            5778999999999999999999999999999999 79999999999998864322111000                   


Q ss_pred             CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128          102 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  176 (346)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~  176 (346)
                          ......+.       ....+.  .+++++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus        75 ----~~~~~~~~-------~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          75 ----LSVGEALM-------RRSDDF--EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ----SBHHHHHH-------HCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ----cchhhhhh-------hhhhcc--cccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                00001110       111121  3578899999999999999999999999998 99999999999998444

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.72  E-value=2.2e-19  Score=136.52  Aligned_cols=110  Identities=9%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             ccCCCeeecCCccHHHHHHHHHhCCcceeeeee----CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccC
Q 019128           24 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE----NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG   99 (346)
Q Consensus        24 m~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd----~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   99 (346)
                      |.++|+++++++|+.+|+++|.+++++++||+|    +++++|++|.+|+......                        
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~------------------------   57 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE------------------------   57 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc------------------------
Confidence            667889999999999999999999999999997    3689999999997532110                        


Q ss_pred             CCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128          100 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                      ....++..+|..+.+++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|++
T Consensus        58 ----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~  116 (120)
T d1jr1a4          58 ----------------EHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK  116 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHH
T ss_pred             ----------------ccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhh
Confidence                            01123444555445789999999999999999999999999999 89999999999998

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.70  E-value=7e-17  Score=127.97  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=96.6

Q ss_pred             ccccccc---CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128           19 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV   94 (346)
Q Consensus        19 ~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~   94 (346)
                      ++++++.   ++++++.+++|+.+|+++|.+++++++||+| +|+++|+++..|+++.+.....                
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~----------------   65 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY----------------   65 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG----------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc----------------
Confidence            4566654   5899999999999999999999999999998 7999999999999775321100                


Q ss_pred             hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128           95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  173 (346)
Q Consensus        95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll  173 (346)
                                 ......+.+.+.   ....+.  .+++++.+++++.++++.|.+++.+++||+| +|+++|++|.+|++
T Consensus        66 -----------~~~~~~v~~~~~---~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil  129 (153)
T d2ooxe2          66 -----------SNLDLSVGEALL---KRPANF--DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL  129 (153)
T ss_dssp             -----------GGGGSBHHHHHH---TSCCCS--SCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHH
T ss_pred             -----------cccccchhhhee---eeeccc--CCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHH
Confidence                       000001111111   112222  3678899999999999999999999999998 89999999999999


Q ss_pred             HHHH
Q 019128          174 MRVI  177 (346)
Q Consensus       174 ~~~~  177 (346)
                      +.++
T Consensus       130 ~~~~  133 (153)
T d2ooxe2         130 NYII  133 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.9e-17  Score=131.73  Aligned_cols=147  Identities=14%  Similarity=0.157  Sum_probs=103.9

Q ss_pred             cccccccccC----CC--eeecCCccHHHHHHHHHhCCcceeeee--e-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhH
Q 019128           17 ETPVSKVMTR----NP--TFVLSDTLAVEALQKMVQGKFRHLPVV--E-NGEVIALLDIAKCLYDAIARMERAAEKGKAI   87 (346)
Q Consensus        17 ~~~v~dim~~----~~--i~v~~~~~l~ea~~~m~~~~~~~lpVv--d-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~   87 (346)
                      ++.++|+|.+    ++  +.+.+++|+.+|+++|.+++++++||+  + +++++|++|.+|+++++.........     
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~-----   76 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDG-----   76 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSC-----
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccc-----
Confidence            5678999973    22  445788899999999999999999999  3 57899999999999865432110000     


Q ss_pred             hhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEe
Q 019128           88 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL  167 (346)
Q Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Gii  167 (346)
                       ...... ..++.....      .........+++++|.+  +++++.+++++.+++++|.+++.+++||.++|+++|+|
T Consensus        77 -~~~~~~-~~~~~~~~~------~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiI  146 (169)
T d2j9la1          77 -VVSTSI-IYFTEHSPP------LPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGII  146 (169)
T ss_dssp             -CCTTCE-EECSSSCCC------CCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred             -cccchh-hhhcccchh------hhhccccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEE
Confidence             000000 000000000      00001223457899985  78999999999999999999999999999999999999


Q ss_pred             eHHHHHHHHHhc
Q 019128          168 TSKDILMRVISQ  179 (346)
Q Consensus       168 t~~dll~~~~~~  179 (346)
                      |.+|++ +++.+
T Consensus       147 t~~Dil-~~l~~  157 (169)
T d2j9la1         147 TKKDVL-KHIAQ  157 (169)
T ss_dssp             EHHHHH-HHHHH
T ss_pred             EHHHHH-HHHHH
Confidence            999999 55443

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=4.2e-17  Score=132.78  Aligned_cols=145  Identities=15%  Similarity=0.139  Sum_probs=105.2

Q ss_pred             CCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhh
Q 019128           15 LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA   90 (346)
Q Consensus        15 ~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~   90 (346)
                      +...++.|+|.  .+++++++++|+.+|++.|.+++++++||+| + ++++|++|..|+++.+............... .
T Consensus        17 l~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~-~   95 (179)
T d2ooxe1          17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAE-I   95 (179)
T ss_dssp             HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGG-G
T ss_pred             HcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhh-h
Confidence            36678999997  5789999999999999999999999999998 4 7999999999999876543322111000000 0


Q ss_pred             hhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC-----EEE
Q 019128           91 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN-----KPR  164 (346)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~-----~~~  164 (346)
                              .      ......+..   ......+|.  .+++++++++++.+++..|.+++++++||+| +|     +++
T Consensus        96 --------~------~~~~~~~~~---~~~~~~~~~--~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vv  156 (179)
T d2ooxe1          96 --------D------KFRLLGLRE---VERKIGAIP--PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIV  156 (179)
T ss_dssp             --------G------GSBHHHHHH---HHHHTTCSC--SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEE
T ss_pred             --------h------ccchhhhcc---cceeeeecc--cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEE
Confidence                    0      000000100   011233454  4789999999999999999999999999998 33     799


Q ss_pred             EEeeHHHHHHHHHhcC
Q 019128          165 GILTSKDILMRVISQN  180 (346)
Q Consensus       165 Giit~~dll~~~~~~~  180 (346)
                      |++|.+||+ +++..+
T Consensus       157 giiT~~dIl-k~l~~~  171 (179)
T d2ooxe1         157 SVLTQYRIL-KFISMN  171 (179)
T ss_dssp             EEEEHHHHH-HHHHTT
T ss_pred             EEEeHHHHH-HHHHHh
Confidence            999999999 565543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.3e-16  Score=125.26  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=98.4

Q ss_pred             cccccccc---cCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128           17 ETPVSKVM---TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE   92 (346)
Q Consensus        17 ~~~v~dim---~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~   92 (346)
                      ..++++++   .++++++.+++|+.+|++.|.+++++++||+| +|+++|++|..|+++.+...                
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~----------------   71 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK----------------   71 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS----------------
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc----------------
Confidence            34566664   36789999999999999999999999999999 88999999999986542100                


Q ss_pred             hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHH
Q 019128           93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  171 (346)
Q Consensus        93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~d  171 (346)
                              .......   .+.+.+   .....|.  .+++++.+++++.++++.|.+++++++||+| +|+++|+||.+|
T Consensus        72 --------~~~~~~~---~v~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~d  135 (145)
T d2v8qe1          72 --------TYNNLDV---SVTKAL---QHRSHYF--EGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD  135 (145)
T ss_dssp             --------CCCCCSS---BHHHHG---GGCCSCC--CSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             --------cccchhh---hhhhcc---chhhhcc--CCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHH
Confidence                    0000000   011111   1233444  3688999999999999999999999999998 899999999999


Q ss_pred             HHHHHHh
Q 019128          172 ILMRVIS  178 (346)
Q Consensus       172 ll~~~~~  178 (346)
                      +++.++.
T Consensus       136 ii~~lv~  142 (145)
T d2v8qe1         136 ILQALVL  142 (145)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHh
Confidence            9955554

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=97.72  E-value=4.1e-06  Score=56.52  Aligned_cols=53  Identities=6%  Similarity=0.045  Sum_probs=43.8

Q ss_pred             HHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEE
Q 019128          266 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRF  326 (346)
Q Consensus       266 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~  326 (346)
                      ++.+.+..|+++|+|++|++...++++|..|+.+.+.++.        |+|.++++ ++.+.
T Consensus        20 ~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V   73 (78)
T d2o1ra1          20 NKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLL--------ITILEVGDNMIKQA   73 (78)
T ss_dssp             HHHHCCCCCCSSCSBHHHHHHHHCSSCCCTTCEEEETTEE--------EEEEEEETTEEEEE
T ss_pred             HHHHCCCCCCccchHHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCeEEEE
Confidence            3344556677789999999999999999999999999999        99999876 44333

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=97.45  E-value=1.8e-05  Score=54.06  Aligned_cols=52  Identities=10%  Similarity=0.041  Sum_probs=42.9

Q ss_pred             hhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC-eEEEe
Q 019128          268 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL-MHRFT  327 (346)
Q Consensus       268 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~~  327 (346)
                      .+.+..|+++|+|++|++...++++|..|+.+.+.++.        |+|.+++++ +++++
T Consensus        27 ~~~~~l~~~~~~TigG~i~~~l~~iP~~g~~v~~~~~~--------f~V~~~~~~rI~~V~   79 (84)
T d2plia1          27 FFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQ--------FTVARADNRRLHTLM   79 (84)
T ss_dssp             HHCCCCCCSSCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEECSSCEEEEE
T ss_pred             HhCCCCCccccHHHHHHHHHHhCccccCCcEEEECCEE--------EEEEEccCCeEEEEE
Confidence            34455677789999999999999999999999999999        999998754 44433

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=97.41  E-value=1.7e-05  Score=53.86  Aligned_cols=46  Identities=9%  Similarity=0.200  Sum_probs=39.2

Q ss_pred             CCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEe
Q 019128          274 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  327 (346)
Q Consensus       274 ~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~  327 (346)
                      ++++|+|++|++...++++|..|+.+.+.++.        |+|.++++ ++.+++
T Consensus        30 ~~~~~~TlgG~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V~   76 (82)
T d2p4pa1          30 RDENYETIGGFMMYMLRKIPKKTDFVLYDKYK--------FEIIDTENFRIDQLM   76 (82)
T ss_dssp             CSCSSCBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             cccCccCHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeecCeEEEEE
Confidence            45678999999999999999999999999999        99999865 444443

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=97.31  E-value=1.9e-05  Score=52.78  Aligned_cols=52  Identities=12%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             hhcCCCCC--CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC-eEEEe
Q 019128          268 AMALSPND--DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL-MHRFT  327 (346)
Q Consensus       268 ~~~~~~~~--~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~~  327 (346)
                      .+.+..++  .+|+|++|++...++++|..|+.+.+.++.        |+|.+++|+ +.+++
T Consensus        17 ~l~~~~~~~~~~~~Ti~G~vl~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V~   71 (76)
T d2o3ga1          17 QLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWR--------FEVVEKEGQRIERVK   71 (76)
T ss_dssp             TTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             HHCcCCCccccccccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            34444443  358999999999999999999999999999        999999654 43433

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.29  E-value=2.9e-05  Score=52.97  Aligned_cols=55  Identities=5%  Similarity=0.037  Sum_probs=42.3

Q ss_pred             HHhhcCCCCCCccccccccccccccCCCCCccc--ccCCCCCCCCCCceeEEEecCCC-CeEEEec
Q 019128          266 DSAMALSPNDDEEDNRSEGSLKFASEGADTARY--LSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC  328 (346)
Q Consensus       266 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~~  328 (346)
                      ++.+.+..|+++|+|++|++...++++|..|+.  +.+.++.        |+|.++++ ++.++++
T Consensus        23 ~~~l~~~l~~~~~~TigG~i~~~lg~iP~~Ge~~~i~~~~~~--------f~V~~~~~~rI~~v~v   80 (84)
T d2r2za1          23 NEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIK--------LTAEEMEGTRLLVLRV   80 (84)
T ss_dssp             HHHHTCCCCCTTCCBHHHHHHHHHSSCCCTTCCCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             HHHHCcCCCCccchhHHHHHHHHhCcCCCCCCEEEEEECCEE--------EEEEEccCCeEEEEEE
Confidence            334455667778999999999999999999995  4467788        99999865 4544443

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.28  E-value=4e-05  Score=52.37  Aligned_cols=41  Identities=5%  Similarity=-0.131  Sum_probs=37.2

Q ss_pred             CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCCe
Q 019128          275 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  323 (346)
Q Consensus       275 ~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~~  323 (346)
                      +++|+|++|++...++++|..|+.+.+.++.        |+|.+++++-
T Consensus        36 ~~~~~TlgG~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~r   76 (85)
T d2p13a1          36 AERYSTLGGYLLWQFGYIPAAGEQITVDGLI--------FEIVSVNKHN   76 (85)
T ss_dssp             TCCCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEECCBCSSS
T ss_pred             cccceEHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCE
Confidence            4578999999999999999999999999999        9999997653

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=97.25  E-value=2.7e-05  Score=53.49  Aligned_cols=44  Identities=11%  Similarity=0.065  Sum_probs=38.1

Q ss_pred             CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC-eEEE
Q 019128          275 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL-MHRF  326 (346)
Q Consensus       275 ~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~  326 (346)
                      +++|+|++|++...++++|..|+.+.+.++.        |+|.+++++ +.++
T Consensus        37 ~~~~~TlgG~il~~lg~iP~~Ge~v~~~~~~--------f~V~~~d~~rI~~V   81 (87)
T d3deda1          37 GGNIHTLAGVMLYQLGRVPSVTDRFEWNGFS--------FEVVDMDRTRVDKI   81 (87)
T ss_dssp             GTCCCBHHHHHHHHHCSSCCTTCEEEETTEE--------EEEEEEETTEEEEE
T ss_pred             cccccCHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCeEEEE
Confidence            4578999999999999999999999999999        999999754 4343

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=97.19  E-value=5.5e-05  Score=51.59  Aligned_cols=54  Identities=9%  Similarity=0.004  Sum_probs=40.9

Q ss_pred             HhhcCCCCCCccccccccccccccCCCCCcccccCC------CCCCCCCCceeEEEecCC-CCeEEEec
Q 019128          267 SAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYP------SPSPGVPSAFAFKVQDNK-GLMHRFTC  328 (346)
Q Consensus       267 ~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~V~d~~-g~~~~~~~  328 (346)
                      ..+.+..++++|+|++|++...+|++|..|+.++++      .+.        |+|.+++ .++.|.++
T Consensus        21 ~~l~~~l~~~~~dTlgG~v~~~lg~iP~~Ge~~~~~~~~~~~~~~--------~~v~~~~~~rI~~v~v   81 (84)
T d2rk5a1          21 EYFETDLESDNVDTIAGFYLTGVGTIPSQEEKEHFEVESNGKHLE--------LINDKVKDGRVTKLKI   81 (84)
T ss_dssp             HHHTCCCCCTTCCBHHHHHHHHHCSCCCSSSCCEEEEEETTEEEE--------EEEEEEETTEEEEEEE
T ss_pred             HHhCCCcccccchhHHHHHHHHhCcCCCCCCEEEEecccccCcEE--------EEEEEcccCEEEEEEE
Confidence            334556677789999999999999999999998875      444        7777764 45555443

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.10  E-value=5.6e-05  Score=51.51  Aligned_cols=44  Identities=9%  Similarity=-0.031  Sum_probs=37.8

Q ss_pred             CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC-eEEEe
Q 019128          276 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL-MHRFT  327 (346)
Q Consensus       276 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~~  327 (346)
                      ++|+|++|++...++++|..|+.+.+.++.        |+|.+++++ +.+++
T Consensus        35 ~~~~Tl~G~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~v~   79 (84)
T d2plsa1          35 GVYHTLSGMIMWLLGRLPQTGDITFWENWR--------LEVIDMDSKRIDKVL   79 (84)
T ss_dssp             CSCCBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             ccccCHHHHHHHHhCccCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            358999999999999999999999999999        999999654 43433

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=97.07  E-value=5.1e-05  Score=52.06  Aligned_cols=44  Identities=7%  Similarity=0.208  Sum_probs=37.9

Q ss_pred             CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC-eEEEe
Q 019128          276 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL-MHRFT  327 (346)
Q Consensus       276 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~~  327 (346)
                      .+|+|++|++...++++|..|+.+.+.++.        |+|.+++++ +.+++
T Consensus        38 ~~~~Tl~G~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~v~   82 (87)
T d2oaia1          38 NNYHTLAGMCISYFGRIPHVGEYFDWAGWR--------IEIVDLDGARIDKLL   82 (87)
T ss_dssp             CCCSBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             cccccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            468999999999999999999999999999        999999654 44443

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=96.96  E-value=6.2e-05  Score=51.65  Aligned_cols=45  Identities=20%  Similarity=0.144  Sum_probs=38.9

Q ss_pred             CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEe
Q 019128          275 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT  327 (346)
Q Consensus       275 ~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~  327 (346)
                      +++|+|++|++...++++|+.|+.+.+.++.        |+|.+++ .++.+++
T Consensus        37 ~~~~~Ti~G~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V~   82 (87)
T d2nqwa1          37 GDEVDTLSGLFLEIKQELPHVGDTAVYEPFR--------FQVTQMDKRRIIEIK   82 (87)
T ss_dssp             HTTCSBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEECSSSEEEEE
T ss_pred             ccceeeHHHHHHHHhCccccCCeEEEECCEE--------EEEEEccCCeEEEEE
Confidence            4578999999999999999999999999999        9999986 4555544

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.59  E-value=0.0011  Score=46.10  Aligned_cols=34  Identities=12%  Similarity=0.106  Sum_probs=28.9

Q ss_pred             hcCCCCCCccccccccccccccCCCCCcccccCC
Q 019128          269 MALSPNDDEEDNRSEGSLKFASEGADTARYLSYP  302 (346)
Q Consensus       269 ~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~  302 (346)
                      +.+..|+++|+|++|++...+|++|..|+.+++.
T Consensus        26 l~~~l~~~~~~Tl~G~~~~~lg~iP~~Ge~v~i~   59 (98)
T d2p3ha1          26 IGYELPEGDYETISGLLFDHANALLKTGDVIEIP   59 (98)
T ss_dssp             HTSCCCCSSCCBHHHHHHHHHCSCCCTTCEEEEE
T ss_pred             HCCCCCCCCccCHHHHHHHHHCcCCCCCCEEEEe
Confidence            3455677789999999999999999999998753

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=85.99  E-value=0.0068  Score=48.38  Aligned_cols=75  Identities=11%  Similarity=-0.017  Sum_probs=59.3

Q ss_pred             CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHH
Q 019128          160 ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  239 (346)
Q Consensus       160 ~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~  239 (346)
                      .+++.|+.+..++.....       ...+.++|...+.++..+++-..+...|.+...+.+||++++++..|.||..|+.
T Consensus       118 ~~~l~~f~dl~~l~~~~~-------~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die  190 (213)
T d1lkvx_         118 RRRMFVFEDILKLDDRSI-------QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVE  190 (213)
T ss_dssp             HHHHCCGGGGGGSCHHHH-------HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred             hhhccccccHHHHccccH-------hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHH
Confidence            344555555555432211       3567788888888999999999999999999999999999999999999999986


Q ss_pred             HH
Q 019128          240 HA  241 (346)
Q Consensus       240 ~~  241 (346)
                      .+
T Consensus       191 ~A  192 (213)
T d1lkvx_         191 EA  192 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            64