Citrus Sinensis ID: 019141

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
cEEHHHcHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHEEHHHcccccccccccccccHHHHHHHHHHHHHcccEEEcccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cEEEEEcHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEHHHHHEEHccccEEccHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccEEEEcccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MMLLVHTRRKLetihgfskinsfgdlgytvcgSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTIlgflspkalyiwgcfpfqlglnsiptlthlaplsifADIVDLGAMGLVMVEDVMISMkqrpalkafgdfsvfsYGIGVAVYAFEgvgmilplesetrNKQRFGRILGWCMAFISLLYGsfgalgyfafgeetKDIITTNFGAGLVSTLVNVGLCVNLfltfplmmnpvyevvERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
MMLLVHTRRKLEtihgfskinsfgdLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWavvlgvslvallvPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
***LVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIV****
MMLLVHTRRKLE**H**SK**SFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAP**
MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAP**
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MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
Q7Z2H8476 Proton-coupled amino acid yes no 0.886 0.642 0.285 2e-27
Q4KL91522 Proton-coupled amino acid N/A no 0.898 0.593 0.297 3e-27
Q924A5475 Proton-coupled amino acid yes no 0.889 0.646 0.295 8e-26
Q8K4D3475 Proton-coupled amino acid yes no 0.889 0.646 0.289 4e-25
Q495N2470 Proton-coupled amino acid no no 0.884 0.648 0.277 1e-24
Q811P0477 Proton-coupled amino acid no no 0.869 0.628 0.288 5e-24
Q4V8B1477 Proton-coupled amino acid no no 0.881 0.637 0.257 1e-23
Q10074656 Vacuolar amino acid trans yes no 0.826 0.434 0.282 9e-22
Q6YBV0504 Proton-coupled amino acid no no 0.892 0.611 0.267 2e-20
Q8CH36500 Proton-coupled amino acid no no 0.878 0.606 0.263 6e-20
>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 Back     alignment and function desciption
 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 23/329 (6%)

Query: 35  GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI-------NNSTTSQTILGFLSP---KAL 84
           GR  VD  +++ Q GFC  Y +F+A+    +I       NN   ++T++  L+P     L
Sbjct: 139 GRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVI--LTPTMDSRL 196

Query: 85  YIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPA-LKAFGD 143
           Y+    PF + L  I  L  L+  S+ A+I  L  + LVM+   ++     P+ L     
Sbjct: 197 YMLSFLPFLVLLVFIRNLRALSIFSLLANITML--VSLVMIYQFIVQRIPDPSHLPLVAP 254

Query: 144 FSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAF 203
           +  +    G A+++FEG+GM+LPLE++ ++ ++F  IL   M  +++LY S G LGY  F
Sbjct: 255 WKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQF 314

Query: 204 GEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRF-------CDYRY 256
           G   +  IT N     +   V +   + +F T+ L      E++   F       C+   
Sbjct: 315 GANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHCELVV 374

Query: 257 CLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE-LGWNGI 315
            L++R  +V    ++A+L+P     +SLVGS     L  ++P L  +  F  E +    I
Sbjct: 375 DLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLTI 434

Query: 316 VMDAALLVFGVVIGISGTWSSLMEIVAPK 344
             DA + + G V  + GT+ +L E++ P 
Sbjct: 435 FKDALISILGFVGFVVGTYEALYELIQPS 463
Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.
Homo sapiens (taxid: 9606)
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description
>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description
>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2 Back     alignment and function description
>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1 Back     alignment and function description
>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1 Back     alignment and function description
>sp|Q10074|AVT3_SCHPO Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1 Back     alignment and function description
>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1 Back     alignment and function description
>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
224084123401 aromatic and neutral amino acid transpor 0.982 0.845 0.805 1e-160
225438450422 PREDICTED: proton-coupled amino acid tra 0.994 0.812 0.753 1e-152
255561435426 amino acid transporter, putative [Ricinu 0.997 0.807 0.756 1e-142
296082558402 unnamed protein product [Vitis vinifera] 0.936 0.803 0.715 1e-140
255572413433 amino acid transporter, putative [Ricinu 0.985 0.785 0.715 1e-139
449444417427 PREDICTED: proton-coupled amino acid tra 0.994 0.803 0.691 1e-137
147806138394 hypothetical protein VITISV_038750 [Viti 0.913 0.799 0.692 1e-135
224132448427 aromatic and neutral amino acid transpor 1.0 0.807 0.662 1e-133
225428310426 PREDICTED: proton-coupled amino acid tra 0.994 0.805 0.703 1e-132
297827867413 amino acid transporter family protein [A 0.973 0.813 0.677 1e-132
>gi|224084123|ref|XP_002307218.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222856667|gb|EEE94214.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/340 (80%), Positives = 309/340 (90%), Gaps = 1/340 (0%)

Query: 1   MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIAN 60
           MMLLVHTRRKLE++ GFSKI SFGDLG+TVCG +GR AVD MIVLAQAGFCVSYLIFIAN
Sbjct: 62  MMLLVHTRRKLESLEGFSKIASFGDLGFTVCGPIGRFAVDIMIVLAQAGFCVSYLIFIAN 121

Query: 61  TLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAM 120
           TL +++N+ +  + ILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFAD+VDLGAM
Sbjct: 122 TLAYVVNHQSGDR-ILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADVVDLGAM 180

Query: 121 GLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRI 180
           G+VMVEDVM+ +K RPAL+AFG FSVF YG+GVAVYAFEG+GM+LPLE+E ++K  FGR+
Sbjct: 181 GVVMVEDVMVFLKNRPALEAFGGFSVFFYGLGVAVYAFEGIGMVLPLETEAKHKDNFGRV 240

Query: 181 LGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMM 240
           LG CMAFISLLYG FG LGYFAFGE+TKDIITTN G GL+S LV +GLCVNLF TFPLMM
Sbjct: 241 LGLCMAFISLLYGGFGVLGYFAFGEDTKDIITTNLGPGLLSNLVQIGLCVNLFFTFPLMM 300

Query: 241 NPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPAL 300
           NPVYEVVERRFCD RY +WLRW VVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPAL
Sbjct: 301 NPVYEVVERRFCDSRYSIWLRWVVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPAL 360

Query: 301 FHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEI 340
           FHL+VFK+ELGWNG+++D A +VFGV+I ++GTWSSLMEI
Sbjct: 361 FHLLVFKEELGWNGLLLDGAFVVFGVIIAVTGTWSSLMEI 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438450|ref|XP_002277064.1| PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561435|ref|XP_002521728.1| amino acid transporter, putative [Ricinus communis] gi|223539119|gb|EEF40715.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296082558|emb|CBI21563.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572413|ref|XP_002527144.1| amino acid transporter, putative [Ricinus communis] gi|223533504|gb|EEF35246.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444417|ref|XP_004139971.1| PREDICTED: proton-coupled amino acid transporter 3-like [Cucumis sativus] gi|449475703|ref|XP_004154528.1| PREDICTED: proton-coupled amino acid transporter 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147806138|emb|CAN70007.1| hypothetical protein VITISV_038750 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132448|ref|XP_002328275.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222837790|gb|EEE76155.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428310|ref|XP_002282927.1| PREDICTED: proton-coupled amino acid transporter 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297827867|ref|XP_002881816.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297327655|gb|EFH58075.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:504955913413 AT2G42005 "AT2G42005" [Arabido 0.971 0.811 0.637 9.8e-119
TAIR|locus:2121733436 AT4G38250 [Arabidopsis thalian 0.997 0.788 0.649 6.9e-118
TAIR|locus:2156862427 AT5G65990 [Arabidopsis thalian 0.991 0.800 0.626 2.7e-116
TAIR|locus:2081471432 ANT1 "AT3G11900" [Arabidopsis 0.692 0.553 0.367 2.3e-48
UNIPROTKB|F1MEI6480 SLC36A3 "Uncharacterized prote 0.892 0.641 0.273 1.1e-27
UNIPROTKB|Q7Z2H8476 SLC36A1 "Proton-coupled amino 0.881 0.638 0.279 6.6e-27
RGD|619801475 Slc36a1 "solute carrier family 0.881 0.64 0.291 1.1e-26
UNIPROTKB|Q495N2470 SLC36A3 "Proton-coupled amino 0.892 0.655 0.270 1.7e-26
MGI|MGI:2445299475 Slc36a1 "solute carrier family 0.889 0.646 0.279 1.9e-26
ZFIN|ZDB-GENE-061117-1468 slc36a1 "solute carrier family 0.884 0.651 0.288 2.2e-26
TAIR|locus:504955913 AT2G42005 "AT2G42005" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 220/345 (63%), Positives = 268/345 (77%)

Query:     1 MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIAN 60
             MMLLVH RRKL    G S I SFGDLG+  CG++GR  VD +I+L+QAGFCV YLIFI N
Sbjct:    71 MMLLVHIRRKL----GVSNIGSFGDLGFAACGNLGRFVVDILIILSQAGFCVGYLIFIGN 126

Query:    61 TLTHMINNSTTSQTILGF-----LSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIV 115
             TL ++ +  T S T++       +SPK+LYIWGCFPFQLGLNSI TLTHLAPLSIFAD+V
Sbjct:   127 TLANL-SKPTKSTTLMSLRHLMGVSPKSLYIWGCFPFQLGLNSIKTLTHLAPLSIFADVV 185

Query:   116 DLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ 175
             DLGAM +V+VED+ I++ QRP + AFG  SVF YG+GVAVYAFEGVGM+LPLESET++K 
Sbjct:   186 DLGAMAVVIVEDIKITVVQRPQVVAFGGMSVFFYGMGVAVYAFEGVGMVLPLESETKDKD 245

Query:   176 RFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLT 235
             +FG++L   M FI+++YGSFG LGY AFG++T DIIT N GAG+VS+LV +GLC+NLF T
Sbjct:   246 KFGKVLALSMLFIAVMYGSFGVLGYMAFGDDTMDIITANLGAGVVSSLVQLGLCINLFFT 305

Query:   236 FPLMMNPVYEVVERRFCDYRYCLWLRWXXXXXXXXXXXXXPNFADFLSLVGSSVCCILGF 295
             FPLMMNPV+E+VERRF    YC+WLRW             PNFADFLSLVGSSVCC LGF
Sbjct:   306 FPLMMNPVFEIVERRFWSGMYCVWLRWLLVLAVTLVALLVPNFADFLSLVGSSVCCALGF 365

Query:   296 VLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEI 340
             VLP+LFHL+VFK E+ W    +D  +L+ GV++G+SGTWSSL EI
Sbjct:   366 VLPSLFHLMVFKDEMEWKQRALDVGILLLGVILGVSGTWSSLTEI 410
GO:0005275 "amine transmembrane transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2121733 AT4G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156862 AT5G65990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081471 ANT1 "AT3G11900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MEI6 SLC36A3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z2H8 SLC36A1 "Proton-coupled amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619801 Slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q495N2 SLC36A3 "Proton-coupled amino acid transporter 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2445299 Slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061117-1 slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrANT1
aromatic and neutral amino acid transporter (401 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-46
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 6e-09
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 0.001
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  162 bits (411), Expect = 2e-46
 Identities = 93/362 (25%), Positives = 170/362 (46%), Gaps = 30/362 (8%)

Query: 1   MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIAN 60
           + LLV   + ++ + G  +  S+GDLGY + G  G++ +   I++   G C+SYLIF  +
Sbjct: 51  LHLLVQCSKYVDKVKG-KRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGD 109

Query: 61  TLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAM 120
            L  + ++   +  I         +I       + L+ IP L+ L+ LS+ A +  L  +
Sbjct: 110 NLPAIFDSFFDTCHI-----SLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIV 164

Query: 121 GLVMVEDVMISMKQRP----ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR 176
            LV+    +  +  +       K     +     IG+ V+AFEG  ++LP+++  ++  +
Sbjct: 165 ILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSK 224

Query: 177 FG---RILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVST-LVNVGLCVNL 232
           F    ++L   +  +++LY   G +GY AFG   K  I  N         + N+ L ++L
Sbjct: 225 FKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHL 284

Query: 233 FLTFPLMMNPVYEVVERRFCDYRYC-----------LWLRWAVVLGVSLVALLVPNFADF 281
            L++PL   P+ ++VE                    + +R  +V+   L+A+ VP   DF
Sbjct: 285 LLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDF 344

Query: 282 LSLVGSSVCCILGFVLPALFHLIVFKQELG-----WNGIVMDAALLVFGVVIGISGTWSS 336
           LSLVG++    L F+LP LFHL + K +       W   ++D   +V G+++   G    
Sbjct: 345 LSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGL 404

Query: 337 LM 338
           ++
Sbjct: 405 II 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.92
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.79
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.76
PRK15132403 tyrosine transporter TyrP; Provisional 99.74
PRK10483414 tryptophan permease; Provisional 99.72
PRK09664415 tryptophan permease TnaB; Provisional 99.68
PRK13629443 threonine/serine transporter TdcC; Provisional 99.51
TIGR00814397 stp serine transporter. The HAAAP family includes 99.5
TIGR00909429 2A0306 amino acid transporter. 99.1
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.06
PRK11021410 putative transporter; Provisional 99.02
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.99
PRK10655438 potE putrescine transporter; Provisional 98.94
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.86
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.83
TIGR00906 557 2A0303 cationic amino acid transport permease. 98.82
PRK10746461 putative transport protein YifK; Provisional 98.78
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 98.78
PRK10644445 arginine:agmatin antiporter; Provisional 98.77
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.75
KOG1287479 consensus Amino acid transporters [Amino acid tran 98.75
TIGR00913478 2A0310 amino acid permease (yeast). 98.72
PRK10249458 phenylalanine transporter; Provisional 98.71
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.71
PRK11357445 frlA putative fructoselysine transporter; Provisio 98.67
PRK10238456 aromatic amino acid transporter; Provisional 98.63
PRK15049499 L-asparagine permease; Provisional 98.62
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.61
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.59
PRK11387471 S-methylmethionine transporter; Provisional 98.58
TIGR00930 953 2a30 K-Cl cotransporter. 98.56
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.56
PRK10580457 proY putative proline-specific permease; Provision 98.53
TIGR00911501 2A0308 L-type amino acid transporter. 98.48
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.47
COG0531466 PotE Amino acid transporters [Amino acid transport 98.42
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.4
PRK10836489 lysine transporter; Provisional 98.34
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.28
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.28
PF03845320 Spore_permease: Spore germination protein; InterPr 98.14
COG1457442 CodB Purine-cytosine permease and related proteins 98.03
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 97.97
PRK15238496 inner membrane transporter YjeM; Provisional 97.96
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 97.85
COG3949349 Uncharacterized membrane protein [Function unknown 97.38
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.31
PRK11375484 allantoin permease; Provisional 97.25
PRK11017404 codB cytosine permease; Provisional 97.18
COG0833541 LysP Amino acid transporters [Amino acid transport 96.88
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 96.85
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.8
PRK12488 549 acetate permease; Provisional 96.75
TIGR00813407 sss transporter, SSS family. have different number 96.58
PRK09442483 panF sodium/panthothenate symporter; Provisional 96.47
KOG1289550 consensus Amino acid transporters [Amino acid tran 96.39
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.19
PRK00701439 manganese transport protein MntH; Reviewed 96.13
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.01
KOG3832319 consensus Predicted amino acid transporter [Genera 95.7
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.64
COG0591493 PutP Na+/proline symporter [Amino acid transport a 95.44
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 95.16
PRK09395 551 actP acetate permease; Provisional 94.96
PRK15419502 proline:sodium symporter PutP; Provisional 94.66
PF01566358 Nramp: Natural resistance-associated macrophage pr 94.45
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 93.67
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 90.53
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 87.81
PRK10484523 putative transporter; Provisional 87.35
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 86.61
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 85.85
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 85.16
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 82.04
COG4147529 DhlC Predicted symporter [General function predict 80.24
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-54  Score=394.16  Aligned_cols=332  Identities=34%  Similarity=0.536  Sum_probs=302.6

Q ss_pred             CeeeecchhhhhhhcCCCCcCChhhhhHHh----------hccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccC
Q 019141            1 MMLLVHTRRKLETIHGFSKINSFGDLGYTV----------CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNST   70 (345)
Q Consensus         1 ~~~L~~c~~~~~~~~~~~~~~~y~~l~~~~----------~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~   70 (345)
                      ||+|++|.+++..+.+++ ..+|+|.++.+          +|+++|.+++..+.++++|.|++|+++++++++++.+...
T Consensus        95 ~~~LVk~~~~L~~~~~~~-~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~  173 (449)
T KOG1304|consen   95 MHLLVKCSHKLCKRFRGP-SLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS  173 (449)
T ss_pred             hHHHHHHHHHHHHhcCCc-cccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC
Confidence            799999999998876544 47888888776          5788999999999999999999999999999999999544


Q ss_pred             CcccccccccchhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccCCccccccCcchhhHH
Q 019141           71 TSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYG  150 (345)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (345)
                      ..      ..+.+.++++..++.+|++++|++|+|+.+|.++.++++..+++++++...+.. +.++.+.++++.+++..
T Consensus       174 ~~------~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~~~~~~~~lf  246 (449)
T KOG1304|consen  174 PG------VLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDLPAVTGWSGLPLF  246 (449)
T ss_pred             CC------CccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccccchhhhHHH
Confidence            33      267788988889999999999999999999999999999999999988877655 55677778789999999


Q ss_pred             Hhhhhhhhcceeeeccchhhcccchhhh---hhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHHHHHHHH
Q 019141          151 IGVAVYAFEGVGMILPLESETRNKQRFG---RILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVG  227 (345)
Q Consensus       151 ~~~~~faf~~~~~~~~i~~~m~~p~~~~---~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~~~~~  227 (345)
                      +|+.+|||+|+.++.|++++||+||+|+   +++..++.++.++|..+|++||++|||++++.+++|+|++++.+.+|++
T Consensus       247 ~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~  326 (449)
T KOG1304|consen  247 FGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLL  326 (449)
T ss_pred             HHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHH
Confidence            9999999999999999999999999999   9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccchhhHHHHHHhhhcc----cc---cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHH
Q 019141          228 LCVNLFLTFPLMMNPVYEVVERRFCD----YR---YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPAL  300 (345)
Q Consensus       228 ~~i~~~~s~pl~~~p~~~~l~~~~~~----~~---~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l  300 (345)
                      ++++++++||+|++|..+++|+.+++    +|   ...+.|..+++.+..+|..+|+++.+++++||++++.+++++|++
T Consensus       327 ~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~l  406 (449)
T KOG1304|consen  327 LAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPL  406 (449)
T ss_pred             HHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHH
Confidence            99999999999999999999997743    23   224599999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc---CChhhHhhhhhhhhhhHHHHHHHHHHHHHHh
Q 019141          301 FHLIVFKQE---LGWNGIVMDAALLVFGVVIGISGTWSSLMEI  340 (345)
Q Consensus       301 ~~~~~~~~~---~~~~~~~~~~~~i~~g~~~~v~g~~~si~~i  340 (345)
                      ++++.++++   +.+|+++.+.+++++|+++++.|||++++++
T Consensus       407 iel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  407 IELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999998854   3478899999999999999999999999875

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.27
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.05
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.01
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.9
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.58
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 94.98
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 89.92
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.27  E-value=6e-10  Score=105.66  Aligned_cols=292  Identities=9%  Similarity=-0.013  Sum_probs=162.6

Q ss_pred             chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHH
Q 019141            7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYI   86 (345)
Q Consensus         7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   86 (345)
                      |+.++..+  .++....-+..++.+||+..++..+...+.......++....++.+...++...++       .....+.
T Consensus        59 ~~~el~~~--~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  129 (445)
T 3l1l_A           59 VYAKMSFL--DPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------WVLTITC  129 (445)
T ss_dssp             HHHHHHHH--CCCTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-------HHHHHHH
T ss_pred             HHHHHHcc--CCCCCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-------HHHHHHH
Confidence            45555555  34556777888999999999999999888888777788888887776554432111       1112222


Q ss_pred             HHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc--CCcccc--ccCcchhhHHHhhhhhhhccee
Q 019141           87 WGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ--RPALKA--FGDFSVFSYGIGVAVYAFEGVG  162 (345)
Q Consensus        87 ~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~faf~~~~  162 (345)
                      ++.. ...-....+..|..+.+..+.....+..++.+++.......++  .++...  ..++.++..++....|+|.|..
T Consensus       130 ~~~~-~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e  208 (445)
T 3l1l_A          130 VVVL-WIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVE  208 (445)
T ss_dssp             HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTT
T ss_pred             HHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHH
Confidence            2111 1222233445566666655444433332222221111111110  011111  1135578889999999999999


Q ss_pred             eeccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhhhhheecCccc----ccee---cccCCchHHHHHHHHHHHHHHh
Q 019141          163 MILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFGEETK----DIIT---TNFGAGLVSTLVNVGLCVNLFL  234 (345)
Q Consensus       163 ~~~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~----~~i~---~n~~~~~~~~~~~~~~~i~~~~  234 (345)
                      ......+|+||| |+.+|+...+..+..++|...........+.+..    ++..   .+...++...+..+...+..+.
T Consensus       209 ~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~  288 (445)
T 3l1l_A          209 SASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLG  288 (445)
T ss_dssp             HHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999999999998 5689999999999999999988776666554321    1111   1111223445555555666555


Q ss_pred             hcccchhhHHHHHHhhhccc----------ccchHHHHHHH--HHHHHHHhh--cC----CccchhhhcchhhHHHHHHH
Q 019141          235 TFPLMMNPVYEVVERRFCDY----------RYCLWLRWAVV--LGVSLVALL--VP----NFADFLSLVGSSVCCILGFV  296 (345)
Q Consensus       235 s~pl~~~p~~~~l~~~~~~~----------~~~~~~r~~~v--~~~~~vA~~--vp----~~~~i~~l~Ga~~~~~l~fi  296 (345)
                      +.--..+...+.+...-+++          |++.-.+..++  +++.++...  .|    .++.+.++.  ..+..+.|.
T Consensus       289 ~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~y~  366 (445)
T 3l1l_A          289 SLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVS--VIFTLVPYL  366 (445)
T ss_dssp             THHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHHHH
Confidence            55444554555444333221          11111122211  122222222  22    245555553  356678999


Q ss_pred             HHHHHHHHHhcccC
Q 019141          297 LPALFHLIVFKQEL  310 (345)
Q Consensus       297 lP~l~~~~~~~~~~  310 (345)
                      ++++.+++.||+++
T Consensus       367 ~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          367 YTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHhhcCc
Confidence            99999999987543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 81.53
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.53  E-value=17  Score=32.05  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=25.7

Q ss_pred             CcchhhHHHhhhhhhhcc-eeeeccchhhcccchhhhhhH
Q 019141          143 DFSVFSYGIGVAVYAFEG-VGMILPLESETRNKQRFGRIL  181 (345)
Q Consensus       143 ~~~~~~~~~~~~~faf~~-~~~~~~i~~~m~~p~~~~~~~  181 (345)
                      +..-...+.+-..|+++. +..+...-+.+++.++..|..
T Consensus       236 ~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda  275 (509)
T d2a65a1         236 DPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSG  275 (509)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHH
T ss_pred             ChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccc
Confidence            444456788888888854 666666666677666655533