Citrus Sinensis ID: 019145
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | 2.2.26 [Sep-21-2011] | |||||||
| P35249 | 363 | Replication factor C subu | yes | no | 0.802 | 0.763 | 0.580 | 1e-92 | |
| Q99J62 | 364 | Replication factor C subu | yes | no | 0.802 | 0.760 | 0.577 | 5e-92 | |
| Q54MD4 | 347 | Probable replication fact | yes | no | 0.834 | 0.829 | 0.524 | 7e-86 | |
| P40348 | 353 | Replication factor C subu | yes | no | 0.797 | 0.779 | 0.528 | 2e-82 | |
| Q09843 | 340 | Replication factor C subu | yes | no | 0.828 | 0.841 | 0.484 | 3e-79 | |
| P0C7N7 | 411 | Replication factor C subu | N/A | no | 0.791 | 0.664 | 0.487 | 2e-78 | |
| O28219 | 319 | Replication factor C smal | yes | no | 0.773 | 0.836 | 0.456 | 6e-65 | |
| Q9YBS7 | 325 | Replication factor C smal | yes | no | 0.721 | 0.766 | 0.484 | 3e-64 | |
| A3DNV9 | 329 | Replication factor C smal | yes | no | 0.715 | 0.750 | 0.461 | 3e-62 | |
| Q46C63 | 334 | Replication factor C smal | yes | no | 0.762 | 0.787 | 0.439 | 3e-61 |
| >sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 340 bits (871), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/284 (58%), Positives = 209/284 (73%), Gaps = 7/284 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
GVIP E ++G+FA C+SG FD V ++I EG+ A+ L++Q+
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQL 310
|
The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit may be involved in the elongation of the multiprimed DNA template. Homo sapiens (taxid: 9606) |
| >sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 164/284 (57%), Positives = 209/284 (73%), Gaps = 7/284 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
GVIP ++G+F C SG FD V N+I EG+ A+ L++Q+
Sbjct: 267 GVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQL 310
|
The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit may be involved in the elongation of the multiprimed DNA template. Mus musculus (taxid: 10090) |
| >sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 152/290 (52%), Positives = 196/290 (67%), Gaps = 2/290 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP+++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQHSRQ 335
+ L C+ FD V +IIA+GYP S ++SQ L +VL + Q
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQ--LFDYVLTTKDLNQ 294
|
The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1. This subunit may be involved in the elongation of the multiprimed DNA template. Dictyostelium discoideum (taxid: 44689) |
| >sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 195/282 (69%), Gaps = 7/282 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
+P +++ + +SGDFD K VN + G+ A+ +++Q+
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
|
Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair. RFC2 binds ATP and single-stranded DNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/297 (48%), Positives = 203/297 (68%), Gaps = 11/297 (3%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSIT 269
FKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLF 326
+ ++G +P ++ L + + ++ AEGY ++LSQ+ +L
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLL 295
|
The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1. Subunit 2 binds ATP and single-stranded DNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 210/326 (64%), Gaps = 53/326 (16%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT- 269
FK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T
Sbjct: 213 FKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTA 272
Query: 270 ----------------------SKDLIS------VSGVIPPEVV----EGLF--AVCRSG 295
SK IS ++GVIP + + LF + +S
Sbjct: 273 GRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSI 332
Query: 296 DFDLANKEVNNIIAEGYPASLLLSQV 321
++ K V N+IAEG+ AS +SQ+
Sbjct: 333 RYNEIAKVVENMIAEGWSASQTVSQL 358
|
The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. Subunit 2 binds ATP and single-stranded DNA. Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614) |
| >sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rfcS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 127/278 (45%), Positives = 177/278 (63%), Gaps = 11/278 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +EG+ + + L L IS GD R+AI LQGAA + G + + + ++ PE
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEE 230
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQV 321
+ L G+F A + ++ ++ E G +++Q+
Sbjct: 231 MTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQL 268
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. The complex possesses DNA-dependent ATPase activity which is further stimulated by PCNA. Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) |
| >sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rfcS PE=3 SV=3 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 166/260 (63%), Gaps = 11/260 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGINV+R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVLLDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ + R+ +I E
Sbjct: 120 AQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++ + EAL + IS+GD+R+AI LQ A+ L +T + V G+ P V + A
Sbjct: 180 GVDYEEEALDAIYEISEGDMRKAINVLQAASYL--GKVTVDAVYRVVGMAKPREVREMLA 237
Query: 291 VCRSGDFDLANKEVNNIIAE 310
GDF A + I+ E
Sbjct: 238 TALKGDFTAARSLLRKIMIE 257
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) |
| >sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 166/258 (64%), Gaps = 11/258 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +D EAL + +S+GD+RRAI LQ AA L +T + V G+ P + +
Sbjct: 184 KVEIDEEALEAIHDLSEGDMRRAINILQAAAAL--GKVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 291 VCRSGDFDLANKEVNNII 308
+ +G+F+ A +++ ++
Sbjct: 242 LALAGNFNDAREKLRELM 259
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) (taxid: 399550) |
| >sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 170/273 (62%), Gaps = 10/273 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T D
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS+E + R+ +I ++
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLF 289
L++ + L +SQGD+R+A+ LQ AA + SI+ + + PE + L
Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLI 242
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQV 321
G+F +A KE+N ++ EG ++ Q+
Sbjct: 243 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQI 275
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| 255558610 | 342 | replication factor C / DNA polymerase II | 0.814 | 0.821 | 0.914 | 1e-153 | |
| 225459625 | 341 | PREDICTED: replication factor C subunit | 0.814 | 0.824 | 0.907 | 1e-151 | |
| 147858312 | 341 | hypothetical protein VITISV_019805 [Viti | 0.814 | 0.824 | 0.903 | 1e-150 | |
| 224084964 | 342 | predicted protein [Populus trichocarpa] | 0.831 | 0.839 | 0.865 | 1e-149 | |
| 449449767 | 336 | PREDICTED: replication factor C subunit | 0.814 | 0.836 | 0.879 | 1e-148 | |
| 18395021 | 339 | replication factor C subunit 2/4 [Arabid | 0.814 | 0.828 | 0.879 | 1e-148 | |
| 334182756 | 341 | replication factor C subunit 2/4 [Arabid | 0.814 | 0.824 | 0.879 | 1e-147 | |
| 297845144 | 339 | EMB1968 [Arabidopsis lyrata subsp. lyrat | 0.814 | 0.828 | 0.875 | 1e-147 | |
| 388505532 | 342 | unknown [Lotus japonicus] | 0.814 | 0.821 | 0.871 | 1e-146 | |
| 357463531 | 339 | Replication factor C subunit [Medicago t | 0.814 | 0.828 | 0.861 | 1e-145 |
| >gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/281 (91%), Positives = 269/281 (95%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFF+CNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SRVLHIC EEGLNLDAEALSTLS +SQGDLRRAITYLQGAARL+GS+I+SKDLISVSGVI
Sbjct: 181 SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P E V L+A CRSGDFD+ANKEVNNIIAEGYP S +L Q+
Sbjct: 241 PQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQL 281
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera] gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/281 (90%), Positives = 267/281 (95%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L Q+
Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQL 281
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/281 (90%), Positives = 266/281 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L Q+
Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQL 281
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/291 (86%), Positives = 273/291 (93%), Gaps = 4/291 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQ WVEKYRPKQ+KDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR+G YPCPPYKIII
Sbjct: 61 AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL LD EALSTLSS+SQGDLRRAITYLQGAARLFGSSI+SKDLISVSG I
Sbjct: 181 NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331
P EV E ++A C++GDFDLANKEVN++IAEGYP S +L+Q LF ++V+
Sbjct: 241 PREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQ----LFEVVVE 287
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/281 (87%), Positives = 267/281 (95%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+LHI NEEGL+LD EALSTLSSISQGDLRRAITYLQ AARLFGSSI+SKDL++VSG+I
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P EVV+ LF C+SG+FD ANK+VNN++AEGYP + +LSQ+
Sbjct: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQI 281
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana] gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana] gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana] gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana] gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana] gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/281 (87%), Positives = 266/281 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++Q+
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQL 281
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana] gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/281 (87%), Positives = 266/281 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++Q+
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQL 281
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata] gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/281 (87%), Positives = 264/281 (93%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+L EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL+ VSGV+
Sbjct: 181 NRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++Q+
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQL 281
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/281 (87%), Positives = 266/281 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQVKDVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+ICNEEGL+LDAE LSTLSSISQGDLRRAITYLQ +ARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P VVE + C+SG+FDLANKEVNN IAEGYPAS LL+Q+
Sbjct: 241 PENVVEAILKACKSGNFDLANKEVNNFIAEGYPASQLLTQL 281
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula] gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula] gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula] gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula] gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula] gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/281 (86%), Positives = 264/281 (93%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QS+QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ + + GYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+++IC EEG+ LDAE LSTLS+ISQGDLRRAITYLQ AARLFGSSI+SKDLISVSG++
Sbjct: 181 SRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
P EVVE L CRSG+FDLANKEVNN IAEGYP S +L+Q+
Sbjct: 241 PAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQL 281
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| UNIPROTKB|P35249 | 363 | RFC4 "Replication factor C sub | 0.837 | 0.796 | 0.558 | 9.4e-82 | |
| MGI|MGI:2146571 | 364 | Rfc4 "replication factor C (ac | 0.797 | 0.755 | 0.583 | 2e-81 | |
| RGD|1310142 | 364 | Rfc4 "replication factor C (ac | 0.811 | 0.769 | 0.579 | 3.2e-81 | |
| UNIPROTKB|F1NEW1 | 362 | RFC4 "Uncharacterized protein" | 0.776 | 0.740 | 0.581 | 5.2e-81 | |
| UNIPROTKB|F1NIY0 | 359 | RFC4 "Uncharacterized protein" | 0.776 | 0.746 | 0.581 | 5.2e-81 | |
| UNIPROTKB|E2R2M6 | 363 | RFC4 "Uncharacterized protein" | 0.765 | 0.727 | 0.597 | 5.2e-81 | |
| UNIPROTKB|F1SFI3 | 366 | RFC4 "Uncharacterized protein" | 0.768 | 0.724 | 0.584 | 4.7e-80 | |
| ZFIN|ZDB-GENE-040824-3 | 358 | rfc4 "replication factor C (ac | 0.846 | 0.815 | 0.540 | 1.6e-79 | |
| ASPGD|ASPL0000039105 | 387 | AN2969 [Emericella nidulans (t | 0.701 | 0.625 | 0.572 | 5.2e-77 | |
| DICTYBASE|DDB_G0286027 | 347 | rfc4 "replication factor C sub | 0.776 | 0.772 | 0.541 | 5.7e-75 |
| UNIPROTKB|P35249 RFC4 "Replication factor C subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 167/299 (55%), Positives = 210/299 (70%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPA 314
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAA 303
|
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| MGI|MGI:2146571 Rfc4 "replication factor C (activator 1) 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 165/283 (58%), Positives = 205/283 (72%)
Query: 33 SEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
S E K K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPG
Sbjct: 28 SSGETK-KVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPG 81
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G P
Sbjct: 82 TGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKP 140
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFK
Sbjct: 141 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK 200
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
PLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D
Sbjct: 201 PLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSED 260
Query: 273 LIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPA 314
+I+ ++GVIP ++G+F C SG FD V N+I EG+ A
Sbjct: 261 VITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAA 303
|
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| RGD|1310142 Rfc4 "replication factor C (activator 1) 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 167/288 (57%), Positives = 206/288 (71%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
SS S E K K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 23 SSSAGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 76
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 77 YGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSR 135
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+
Sbjct: 136 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 195
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
KFRFKPLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G
Sbjct: 196 KFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGK 255
Query: 268 ITSKDLIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPA 314
S+D+I+ ++GVIP +EG+ C SG FD + N+I EG+ A
Sbjct: 256 EISEDVITDIAGVIPAATIEGIVTACHSGSFDKLEAVLKNLIDEGHAA 303
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| UNIPROTKB|F1NEW1 RFC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 160/275 (58%), Positives = 199/275 (72%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGY 312
GVIP E ++GL + C SG F+ N+I EGY
Sbjct: 265 GVIPRETIDGLLSACSSGSFEKLETVAKNLINEGY 299
|
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| UNIPROTKB|F1NIY0 RFC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 160/275 (58%), Positives = 199/275 (72%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGY 312
GVIP E ++GL + C SG F+ N+I EGY
Sbjct: 265 GVIPRETIDGLLSACSSGSFEKLETVAKNLINEGY 299
|
|
| UNIPROTKB|E2R2M6 RFC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 159/266 (59%), Positives = 199/266 (74%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++
Sbjct: 157 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADK 216
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGL 288
E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++GVIP ++G+
Sbjct: 217 EHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGI 276
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPA 314
FA C+SG FD V ++I EG+ A
Sbjct: 277 FAACQSGSFDKLEAVVKDLIDEGHAA 302
|
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| UNIPROTKB|F1SFI3 RFC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 156/267 (58%), Positives = 198/267 (74%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPPYKIIILDEADSMT 168
EL++ RVLELNASD+RGI VVR K+K FA + V GS G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMT 158
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 159 SAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAD 218
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEG 287
+E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++GV+P E ++G
Sbjct: 219 KEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDG 278
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPA 314
+ A C+SG FD V ++I EG+ A
Sbjct: 279 VLAACQSGSFDKLEAVVKDLIDEGHAA 305
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| ZFIN|ZDB-GENE-040824-3 rfc4 "replication factor C (activator 1) 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 159/294 (54%), Positives = 203/294 (69%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K S++QS + Q + PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GP+LY+ RVLELNASD+RGI VVR K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRIIEP
Sbjct: 126 V-AGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEP 184
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPL+ +V R+L IC +E L E + L +S+GDLR+AIT+LQ A
Sbjct: 185 LTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGA 244
Query: 262 RLFGS-SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPA 314
RL IT + +I ++GV+PP+V++ L +C G F+ V ++I +GY A
Sbjct: 245 RLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAA 298
|
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| ASPGD|ASPL0000039105 AN2969 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 146/255 (57%), Positives = 183/255 (71%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
FS+++ P + ++E R QPWVEKYRPK + DVA Q+ +VL TL+ +N
Sbjct: 16 FSSSKQKPTEGKEEQSRL--------QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNL 67
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR K+K FA V +
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQL 127
Query: 143 G--SG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+G + YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 128 SHPTGLDAEYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 187
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
IIEPLASRC+KFRFKPL R+ I E L+L+ + L S S GDLRRAITYL
Sbjct: 188 IIEPLASRCSKFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYL 247
Query: 258 QGAARLFGSSITSKD 272
Q AARL G++ +KD
Sbjct: 248 QSAARLVGAAKAAKD 262
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| DICTYBASE|DDB_G0286027 rfc4 "replication factor C subunit 4" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 145/268 (54%), Positives = 185/268 (69%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP+++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYP 313
+ L C+ FD V +IIA+GYP
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYP 274
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q09843 | RFC2_SCHPO | No assigned EC number | 0.4848 | 0.8289 | 0.8411 | yes | no |
| P40348 | RFC2_YEAST | No assigned EC number | 0.5283 | 0.7971 | 0.7790 | yes | no |
| P35249 | RFC4_HUMAN | No assigned EC number | 0.5809 | 0.8028 | 0.7630 | yes | no |
| Q99J62 | RFC4_MOUSE | No assigned EC number | 0.5774 | 0.8028 | 0.7609 | yes | no |
| Q54MD4 | RFC4_DICDI | No assigned EC number | 0.5241 | 0.8347 | 0.8299 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00015431001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (341 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00024178001 | RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa) | • | • | • | • | • | 0.975 | |||
 | GSVIVG00027060001 | SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (354 aa) | • | • | • | • | • | • | 0.905 | ||
 | GSVIVG00006013001 | RecName- Full=DNA polymerase; EC=2.7.7.7; (1126 aa) | • | • | • | • | 0.879 | ||||
 | GSVIVG00022496001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (330 aa) | • | • | 0.852 | ||||||
 | GSVIVG00022150001 | RecName- Full=DNA ligase; EC=6.5.1.1; (783 aa) | • | • | • | 0.826 | |||||
 | GSVIVG00001122001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (326 aa) | • | • | • | • | • | • | 0.818 | ||
 | GSVIVG00015413001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (360 aa) | • | • | • | • | • | • | 0.811 | ||
 | GSVIVG00002439001 | RecName- Full=DNA primase; EC=2.7.7.-; (457 aa) | • | • | • | 0.766 | |||||
 | GSVIVG00017275001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (854 aa) | • | • | • | • | 0.741 | ||||
 | GSVIVG00022048001 | RecName- Full=DNA polymerase; EC=2.7.7.7; (2224 aa) | • | • | • | • | 0.724 | ||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 345 | |||
| PRK00440 | 319 | PRK00440, rfc, replication factor C small subunit; | 1e-109 | |
| PLN03025 | 319 | PLN03025, PLN03025, replication factor C subunit; | 1e-80 | |
| PRK12402 | 337 | PRK12402, PRK12402, replication factor C small sub | 5e-62 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 4e-57 | |
| PHA02544 | 316 | PHA02544, 44, clamp loader, small subunit; Provisi | 1e-38 | |
| TIGR02397 | 355 | TIGR02397, dnaX_nterm, DNA polymerase III, subunit | 6e-36 | |
| PRK14953 | 486 | PRK14953, PRK14953, DNA polymerase III subunits ga | 1e-35 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 5e-34 | |
| PRK14962 | 472 | PRK14962, PRK14962, DNA polymerase III subunits ga | 6e-34 | |
| COG2812 | 515 | COG2812, DnaX, DNA polymerase III, gamma/tau subun | 1e-32 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 1e-26 | |
| PRK06305 | 451 | PRK06305, PRK06305, DNA polymerase III subunits ga | 1e-25 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 2e-25 | |
| PRK07133 | 725 | PRK07133, PRK07133, DNA polymerase III subunits ga | 2e-24 | |
| PRK14963 | 504 | PRK14963, PRK14963, DNA polymerase III subunits ga | 6e-23 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 1e-22 | |
| TIGR00678 | 188 | TIGR00678, holB, DNA polymerase III, delta' subuni | 3e-20 | |
| PRK14956 | 484 | PRK14956, PRK14956, DNA polymerase III subunits ga | 1e-19 | |
| PRK05563 | 559 | PRK05563, PRK05563, DNA polymerase III subunits ga | 1e-19 | |
| PRK14965 | 576 | PRK14965, PRK14965, DNA polymerase III subunits ga | 2e-18 | |
| pfam13177 | 161 | pfam13177, DNA_pol3_delta2, DNA polymerase III, de | 3e-18 | |
| PRK14961 | 363 | PRK14961, PRK14961, DNA polymerase III subunits ga | 3e-18 | |
| PRK14970 | 367 | PRK14970, PRK14970, DNA polymerase III subunits ga | 3e-18 | |
| PRK05896 | 605 | PRK05896, PRK05896, DNA polymerase III subunits ga | 8e-18 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 1e-17 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 1e-17 | |
| PRK08451 | 535 | PRK08451, PRK08451, DNA polymerase III subunits ga | 2e-17 | |
| PRK06647 | 563 | PRK06647, PRK06647, DNA polymerase III subunits ga | 2e-17 | |
| PRK14969 | 527 | PRK14969, PRK14969, DNA polymerase III subunits ga | 8e-17 | |
| PRK14955 | 397 | PRK14955, PRK14955, DNA polymerase III subunits ga | 1e-16 | |
| PRK08691 | 709 | PRK08691, PRK08691, DNA polymerase III subunits ga | 2e-16 | |
| PRK06645 | 507 | PRK06645, PRK06645, DNA polymerase III subunits ga | 5e-16 | |
| PRK14964 | 491 | PRK14964, PRK14964, DNA polymerase III subunits ga | 5e-16 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 1e-15 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 4e-15 | |
| PRK14960 | 702 | PRK14960, PRK14960, DNA polymerase III subunits ga | 1e-13 | |
| PRK14957 | 546 | PRK14957, PRK14957, DNA polymerase III subunits ga | 2e-13 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 2e-13 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-13 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 9e-13 | |
| PRK09112 | 351 | PRK09112, PRK09112, DNA polymerase III subunit del | 2e-12 | |
| COG0470 | 230 | COG0470, HolB, ATPase involved in DNA replication | 2e-12 | |
| PRK05564 | 313 | PRK05564, PRK05564, DNA polymerase III subunit del | 5e-12 | |
| PRK07399 | 314 | PRK07399, PRK07399, DNA polymerase III subunit del | 5e-12 | |
| PRK09111 | 598 | PRK09111, PRK09111, DNA polymerase III subunits ga | 6e-12 | |
| PRK14952 | 584 | PRK14952, PRK14952, DNA polymerase III subunits ga | 6e-12 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 3e-11 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 6e-11 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 3e-10 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 4e-10 | |
| PRK13341 | 725 | PRK13341, PRK13341, recombination factor protein R | 5e-10 | |
| PRK14958 | 509 | PRK14958, PRK14958, DNA polymerase III subunits ga | 6e-10 | |
| PRK07471 | 365 | PRK07471, PRK07471, DNA polymerase III subunit del | 6e-10 | |
| TIGR02902 | 531 | TIGR02902, spore_lonB, ATP-dependent protease LonB | 2e-09 | |
| TIGR00602 | 637 | TIGR00602, rad24, checkpoint protein rad24 | 2e-08 | |
| pfam03215 | 490 | pfam03215, Rad17, Rad17 cell cycle checkpoint prot | 3e-08 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 2e-07 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 3e-07 | |
| PRK08058 | 329 | PRK08058, PRK08058, DNA polymerase III subunit del | 5e-07 | |
| COG1474 | 366 | COG1474, CDC6, Cdc6-related protein, AAA superfami | 5e-07 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 6e-07 | |
| PRK06090 | 319 | PRK06090, PRK06090, DNA polymerase III subunit del | 1e-06 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 1e-06 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 2e-06 | |
| pfam08542 | 89 | pfam08542, Rep_fac_C, Replication factor C C-termi | 9e-06 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 2e-05 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 1e-04 | |
| TIGR02903 | 615 | TIGR02903, spore_lon_C, ATP-dependent protease, Lo | 1e-04 | |
| pfam13086 | 220 | pfam13086, AAA_11, AAA domain | 2e-04 | |
| PRK06964 | 342 | PRK06964, PRK06964, DNA polymerase III subunit del | 2e-04 | |
| pfam09848 | 348 | pfam09848, DUF2075, Uncharacterized conserved prot | 2e-04 | |
| PRK05707 | 328 | PRK05707, PRK05707, DNA polymerase III subunit del | 3e-04 | |
| PRK08699 | 325 | PRK08699, PRK08699, DNA polymerase III subunit del | 3e-04 | |
| PRK07993 | 334 | PRK07993, PRK07993, DNA polymerase III subunit del | 4e-04 | |
| COG1466 | 334 | COG1466, HolA, DNA polymerase III, delta subunit [ | 5e-04 | |
| TIGR03345 | 852 | TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp | 6e-04 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 8e-04 | |
| PRK07940 | 394 | PRK07940, PRK07940, DNA polymerase III subunit del | 8e-04 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.001 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 0.002 | |
| TIGR02881 | 261 | TIGR02881, spore_V_K, stage V sporulation protein | 0.002 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 0.003 | |
| CHL00181 | 287 | CHL00181, cbbX, CbbX; Provisional | 0.003 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 0.003 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 0.004 | |
| PRK08769 | 319 | PRK08769, PRK08769, DNA polymerase III subunit del | 0.004 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 0.004 |
| >gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-109
Identities = 120/262 (45%), Positives = 173/262 (66%), Gaps = 10/262 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WVEKYRP+ + ++ QEE+V L + ++ N PH+LF GPPGTGKTT ALA+A +L+G
Sbjct: 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG- 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ LELNASD+RGI+V+R KIK FA A GG P +KII LDEAD++T
Sbjct: 65 EDWRENFLELNASDERGIDVIRNKIKEFARTAPV-----GGAP---FKIIFLDEADNLTS 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME YS+ TRF CNY S+II+P+ SRCA FRF PL +E ++ R+ +I
Sbjct: 117 DAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN 176
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +S+GD+R+AI LQ AA G +T + + ++G PE + +
Sbjct: 177 EGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPEEIREMI 235
Query: 290 AVCRSGDFDLANKEVNNIIAEG 311
+ +GDF A +++ +++ +
Sbjct: 236 ELALNGDFTEAREKLRDLMIDY 257
|
Length = 319 |
| >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 1e-80
Identities = 116/266 (43%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 62 -NYKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTS 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 114 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ FG + +++ V P V+ +
Sbjct: 174 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG-FVNQENVFKVCDQPHPLHVKNIV 232
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPAS 315
C G FD A + + GY +
Sbjct: 233 RNCLKGKFDDACDGLKQLYDLGYSPT 258
|
Length = 319 |
| >gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 5e-62
Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP ++D+ Q+EVV L+ +++ N PH+L GPPG+GKT A+A +L+G +
Sbjct: 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-D 63
Query: 111 LYKSRVLELNASD--DRGINVVRTKIKTFAAVAVGSGQRR--------------GGYPCP 154
+++ E N +D D+G + FA + R Y P
Sbjct: 64 PWENNFTEFNVADFFDQGKKYLVED-PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR-P 121
Query: 155 ---PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
YK I+LD A+++ EDAQ ALRR ME YS+ RF S++I P+ SRC F
Sbjct: 122 LSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFF 181
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
+ +++ + + I EG++ D + L ++ + GDLR+AI LQ AA L IT +
Sbjct: 182 RAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA-LAAGEITME 240
Query: 272 DLISVSGVIP-PEVVEGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQV 321
G + EV+E L +GDF A K +++ +I EG +L ++
Sbjct: 241 AAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEEL 292
|
Length = 337 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 4e-57
Identities = 97/215 (45%), Positives = 134/215 (62%), Gaps = 10/215 (4%)
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT ALA+A +LFG E ++ LELNASD+RGINV+R K+K FA G
Sbjct: 580 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGA--------S 630
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KII LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL
Sbjct: 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 690
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E ++ R+ +I EGL L E L + I++GD+RRAI LQ AA L IT +++
Sbjct: 691 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DDKITDENVFL 749
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE 310
V+ PE + + + G+F A +++ I+ +
Sbjct: 750 VASRARPEDIREMMLLALKGNFLKAREKLREILLK 784
|
Length = 846 |
| >gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-38
Identities = 85/271 (31%), Positives = 120/271 (44%), Gaps = 33/271 (12%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP-PGTGKTTTALAIAHQLFGP 109
W +KYRP + + + ++ P+ML + P PGTGKTT A A+ +++
Sbjct: 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--- 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA-VAVGSGQRRGGYPCPPYKIIILDEAD-SM 167
+ VL +N SD R I+ VR ++ FA+ V++ K+II+DE D
Sbjct: 68 ---GAEVLFVNGSDCR-IDFVRNRLTRFASTVSL----------TGGGKVIIIDEFDRLG 113
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEE---VMSS-- 221
DAQ LR ME YSK F N + IIEPL SRC F P EE +M
Sbjct: 114 LADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMI 173
Query: 222 -RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R I EG+ +D + L+ L + D RR I LQ A I + L V+
Sbjct: 174 VRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--TGKIDAGILSEVTNSD 231
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
+VVE L ++ DF N +
Sbjct: 232 IDDVVEAL----KAKDFKAVRALAPNYANDY 258
|
Length = 316 |
| >gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 6e-36
Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 33/298 (11%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY 112
KYRP+ +DV QE +V+ L N ++ H LF GP GTGKT+ A A L
Sbjct: 7 KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP 66
Query: 113 KSR------------------VLELNASDDRGINVVRTKIKT--FAAVAVGSGQRRGGYP 152
V+E++A+ + G++ +R + +A SG+
Sbjct: 67 DGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPS---SGK------ 117
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
YK+ I+DE +++ A NAL +T+E + F +I + SRC +F FK
Sbjct: 118 ---YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFK 174
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+ E + R+ I ++EG+ ++ EAL ++ + G LR A++ L +IT +D
Sbjct: 175 RIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYED 234
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330
+ + G++ E + L + D A K ++ I+ G L + +L L++
Sbjct: 235 VNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLL 292
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355 |
| >gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 84/288 (29%), Positives = 132/288 (45%), Gaps = 41/288 (14%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--------- 99
P+ KYRPK K+V QE VVR+L N ++ H +F GP GTGKTT A
Sbjct: 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64
Query: 100 ---------------LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+ I F P+L E++A+ +RGI+ +R ++ +
Sbjct: 65 LNPQEGEPCGKCENCVEIDKGSF-PDLI-----EIDAASNRGIDDIRA-LRDAVSYTPIK 117
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G+ YK+ I+DEA +T++A NAL +T+E T F +I + S
Sbjct: 118 GK---------YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS 168
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +F F ++E + + ICNEE + + +AL L+ S+G +R A + L A+
Sbjct: 169 RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG 228
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGY 312
+T K + G++ E V + D D A K + + +GY
Sbjct: 229 EGKVTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGY 276
|
Length = 486 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 5e-34
Identities = 77/240 (32%), Positives = 105/240 (43%), Gaps = 31/240 (12%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET--ANCPH--MLFYGPPGTGKTTTALAIAHQ 105
PWVEKYRPK + DV E+ L +E+ P +L YGPPG GKT+ A A+A+
Sbjct: 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
Y V+ELNASD R I+ A G G K+I+LDE D
Sbjct: 63 ------YGWEVIELNASDQRT----ADVIERVA----GEAATSGSLFGARRKLILLDEVD 108
Query: 166 SM--TEDA--QNALRRTMETYSKVTRFFFIC---NYISRIIEPLASRCAKFRFKPLSEEV 218
+ ED A+ + K + I + + L + C FK LS
Sbjct: 109 GIHGNEDRGGARAILELI----KKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRS 164
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ + IC +EG+ D EAL ++ S GDLR AI LQ A G + + + G
Sbjct: 165 IVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE--GYGKLTLEDVKTLG 222
|
Length = 482 |
| >gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-34
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 29/286 (10%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL------ 106
KYRPK +V Q+ V +++ N L+ + H +F GP GTGKTT A +A L
Sbjct: 7 KYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRK 66
Query: 107 FGPELYKSR------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
+ R V+EL+A+ +RGI+ +R KI+ AVG G Y
Sbjct: 67 GVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRD----AVGYRPMEGKY--- 118
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
K+ I+DE +T++A NAL +T+E F + ++ + SRC F+ +
Sbjct: 119 --KVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNI 176
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
S+E++ R+ + EG+ +D EALS ++ + G LR A+T L+ + IT + +
Sbjct: 177 SDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVH 236
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
G+IP EVV +GD ++++ G +L+ Q
Sbjct: 237 EALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQ 282
|
Length = 472 |
| >gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 86/307 (28%), Positives = 140/307 (45%), Gaps = 34/307 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-- 103
S Q KYRPK DV QE VV+ L+N LE H LF GP G GKTT A +A
Sbjct: 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKA 61
Query: 104 -------HQLFGPELYKSR---------VLELNASDDRGINVVRTKIKT--FAAVAVGSG 145
+ + V+E++A+ + G++ +R I+ +A
Sbjct: 62 LNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR-- 119
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
YK+ I+DE +++ A NAL +T+E +F +I + SR
Sbjct: 120 ----------YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR 169
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C +F FK L E ++ + I ++EG+N++ +ALS ++ ++G LR A++ L A
Sbjct: 170 CQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE 229
Query: 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGY-PASLLLSQVTLL 324
IT + + + G+ E + L GD A + +N +I EG P + L + L
Sbjct: 230 GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFL 289
Query: 325 LFVLMVQ 331
+L+ +
Sbjct: 290 RDLLLFK 296
|
Length = 515 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 53 EKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
E+ RPK + +V QE ++ + L +E M+ +GPPGTGKTT A IA
Sbjct: 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT--- 60
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ L+A G+ +R I+ A +G+R I+ +DE +
Sbjct: 61 ---DAPFEALSAVTS-GVKDLREVIEE-ARQRRSAGRR---------TILFIDEIHRFNK 106
Query: 170 DAQNALRRTMETYSKVTRFFFIC----N-YISRIIEPLASRCAKFRFKPLSEEVMSS--- 221
Q+AL +E +T I N + L SR F KPLSEE +
Sbjct: 107 AQQDALLPHVEDG-TIT---LIGATTENPSFE-VNPALLSRAQVFELKPLSEEDIEQLLK 161
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R L + LD EAL L+ ++ GD RRA+ L+ AA SIT + L
Sbjct: 162 RALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQ 217
|
Length = 413 |
| >gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 31/312 (9%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA 103
+ S Q KYRP+ ++ Q+ VV VL N L H LF G GTGKTT A A
Sbjct: 1 MTSYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60
Query: 104 HQLFGPELYKSR-------------------VLELNASDDRGINVVRTKIKTFAAVAVGS 144
L + + VLE++ + RGI +R +T
Sbjct: 61 KALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPS-K 119
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ YKI I+DE +T++A N+L +T+E + +FF I +I + S
Sbjct: 120 SR---------YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC K K + EE + ++ I +EG+ EAL ++ +QG LR A + LF
Sbjct: 171 RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLF 230
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLL 324
S+ + G++ + + L + ++ A + V + + G + L +TL
Sbjct: 231 PKSLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLF 290
Query: 325 L-FVLMVQHSRQ 335
+L+ Q+++Q
Sbjct: 291 FRNILLKQYNKQ 302
|
Length = 451 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-25
Identities = 49/149 (32%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125
QEE + L LE ++L YGPPGTGKTT A AIA++LF P + L LNASD
Sbjct: 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLL 59
Query: 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
VV F + + ++ +DE DS++ AQNAL R +ET + +
Sbjct: 60 EGLVVAELFGHFLVRLLFELAEKA-----KPGVLFIDEIDSLSRGAQNALLRVLETLNDL 114
Query: 186 T------RFFFICNYIS--RIIEPLASRC 206
R N + L R
Sbjct: 115 RIDRENVRVIGATNRPLLGDLDRALYDRL 143
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 26/286 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA------ 103
KYRPK D+ Q+ +V+ L N +++ H LF GP GTGKT+ A A
Sbjct: 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67
Query: 104 HQ--LFGP------ELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
H+ L P + S ++E++A+ + G++ +R I+ + S
Sbjct: 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS---------- 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YKI I+DE +++ A NAL +T+E K F + +I + SR +F F+ +
Sbjct: 118 KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
SE+ + SR+ I +E ++ + AL ++ +S G LR A++ + + + IT K++
Sbjct: 178 SEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
+ G++ E + L + S D +N I +G LLL
Sbjct: 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLIS 283
|
Length = 725 |
| >gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 6e-23
Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 33/287 (11%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--LAIAHQLFGP 109
++ RP +V QE V VL L H LF GP G GKTTTA +A+A G
Sbjct: 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE 65
Query: 110 ---------------ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
VLE++A+ + + VR ++ +A G R
Sbjct: 66 DPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVR-DLREKVLLAPLRGGR------- 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
K+ ILDEA M++ A NAL +T+E + F ++ + SR FRF+ L
Sbjct: 118 --KVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKD 272
+EE ++ ++ + EG + EAL ++ ++ G +R A + L+ RL G+ +T K
Sbjct: 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLE---RLLALGTPVTRKQ 232
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
+ G+ P E + G+ A GD A + +G+ A L+
Sbjct: 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVE 279
|
Length = 504 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 1e-22
Identities = 68/235 (28%), Positives = 94/235 (40%), Gaps = 41/235 (17%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
P E+ RPK + +V QE ++ + L +E + M+ +GPPGTGKTT A IA
Sbjct: 10 FRMPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIA 69
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
+ L+A G+ +R I+ A G+R I+ LDE
Sbjct: 70 GTT------NAAFEALSAVTS-GVKDLREIIEE-ARKNRLLGRR---------TILFLDE 112
Query: 164 ADSMTEDAQNALRRTMETYSKVTRF-------FFICNYISRIIEPLASRCAKFRFKPLSE 216
+ Q+AL +E + F N L SR F KPLS
Sbjct: 113 IHRFNKAQQDALLPHVENG-TIILIGATTENPSFELN------PALLSRARVFELKPLSS 165
Query: 217 EVMSSRVLHICN--EEGL-----NLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + + E GL LD EAL L +S GD RRA+ L+ AA
Sbjct: 166 EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSA 220
|
Length = 436 |
| >gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 3e-20
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 36/203 (17%)
Query: 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKS----------RVLEL 119
+ L LE H LF GP G GK ALA+A L + +
Sbjct: 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG 61
Query: 120 NASDDR---------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
N D ++ VR ++ + SG +++I+++A+ M E
Sbjct: 62 NHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESG----------RRVVIIEDAERMNEA 111
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
A NAL +T+E T F I +++ + SRC F PLSEE + + L
Sbjct: 112 AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL-LQWL-----I 165
Query: 231 GLNLDAEALSTLSSISQGDLRRA 253
+ EA L +++ G A
Sbjct: 166 RQGISEEAAELLLALAGGSPGAA 188
|
This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188 |
| >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-19
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 29/226 (12%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
KYRP+ +DV HQ+ + L N L++ H +F+GP G GKTT A +A +L
Sbjct: 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPI 70
Query: 107 ---------FGPELYK---SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
E+ K S VLE++A+ +RGI +R +G
Sbjct: 71 GNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGG---------- 120
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YK+ I+DE +T+ + NAL +T+E F +I E + SRC F FK +
Sbjct: 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKV 180
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
V+ +C E + D E L ++ G +R +++++ A
Sbjct: 181 PLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226
|
Length = 484 |
| >gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 1e-19
Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 73/299 (24%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTA--LAIA----HQL 106
K+RP+ +DV QE + + L N ++ H LF GP GTGKT+ A A A +
Sbjct: 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP 68
Query: 107 FG-P----ELYKS-------RVLELNASDDRGINVVRT---KIKTFAAVAVGSGQRRGGY 151
G P E+ K+ V+E++A+ + G++ +R K+K +A
Sbjct: 69 DGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVK-YAPSEA--------- 118
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP-------LA- 203
YK+ I+DE ++ A NAL +T+E EP LA
Sbjct: 119 ---KYKVYIIDEVHMLSTGAFNALLKTLE-------------------EPPAHVIFILAT 156
Query: 204 -----------SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
SRC +F FK +S E + R+ +I ++EG+ + EAL ++ ++G +R
Sbjct: 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRD 216
Query: 253 AITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
A++ L A +T +D + V+G + E ++ L GD A K + ++ EG
Sbjct: 217 ALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEG 275
|
Length = 559 |
| >gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-18
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 29/246 (11%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
KYRP+ D+ QE V R L N ++T H LF G G GKT+TA +A L G
Sbjct: 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
E+ + R V E++ + + G++ +R + + S R
Sbjct: 69 TAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRE--NVKYLPSRSR------- 119
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YKI I+DE ++ +A NAL +T+E +F F ++ + SRC +F F+ +
Sbjct: 120 -YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+ + R+ +I ++EG+++ AL+ ++ G +R +++ L G ++ D+
Sbjct: 179 PLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVA 238
Query: 275 SVSGVI 280
+ GV+
Sbjct: 239 ELLGVV 244
|
Length = 576 |
| >gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-18
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 30/170 (17%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLF----------GPELYKS 114
Q +V+++L N+++ H LF GP G GK AL A LF G
Sbjct: 2 QPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFCENPQDDEPCGECKSCK 61
Query: 115 RVLELN-------ASDDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
R+ N + + I + +R I+ F+ K+ I+++A+
Sbjct: 62 RIENGNHPDVIIIEPEGKSIKIDQIRELIEEFSKKPFEGK----------KKVYIIEDAE 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
MTE A NAL +T+E + T F + + ++++ + SRC FKPLS
Sbjct: 112 KMTESAANALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161
|
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161 |
| >gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-18
Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
K+RP+ +D+ Q+ +V ++N L H L G G GKTT A +A L
Sbjct: 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI 68
Query: 107 ---------FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY- 156
E+ K L+L D RTK++ + Y P
Sbjct: 69 TSNPCRKCIICKEIEKGLCLDLIEID----AASRTKVEEMREIL------DNIYYSPSKS 118
Query: 157 --KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
K+ ++DE ++ + NAL +T+E + +F + +I + + SRC +F+ K +
Sbjct: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKII 178
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
SEE + + + +I +E ++ D AL ++ + G +R A+ L+ A L +I K++
Sbjct: 179 SEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVT 238
Query: 275 SVSGVIPPE 283
+ G++ +
Sbjct: 239 DMLGLLNEK 247
|
Length = 363 |
| >gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 3e-18
Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 17/294 (5%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGP--- 109
KYRP+ DV Q + L N +E + +LF GP G GKTT A +A ++ P
Sbjct: 10 KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYD 69
Query: 110 ---ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
E + + EL+A+ + ++ +R I + +G+ YKI I+DE
Sbjct: 70 DPNEDFSFNIFELDAASNNSVDDIRNLIDQ-VRIPPQTGK---------YKIYIIDEVHM 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
++ A NA +T+E F +II + SRC F FK ++ + + + I
Sbjct: 120 LSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
+EG+ + +AL ++ + G LR A++ G +IT + + ++ +
Sbjct: 180 AVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYI 239
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQHSRQCLYII 340
+ + N I+ +G+ ++ + LMV + + ++
Sbjct: 240 NVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALL 293
|
Length = 367 |
| >gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 8e-18
Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 31/298 (10%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL 111
KYRP K + QE + ++L N + H +F GP G GKT+ A A +
Sbjct: 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNP 67
Query: 112 YKSRV------------------LELNASDDRGINVVRTKIKT-FAAVAVGSGQRRGGYP 152
+EL+A+ + G++ +R I
Sbjct: 68 KDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFK-------- 119
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
YK+ I+DEA ++ A NAL +T+E K F F +I + SRC ++ FK
Sbjct: 120 ---YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFK 176
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L+ + + I +E + ++ A+ ++ ++ G LR ++ L + S I +D
Sbjct: 177 KLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIED 236
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330
+ G++ L + + D + +N + ++G + LL L+V
Sbjct: 237 INKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLV 294
|
Length = 605 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 30/285 (10%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--LAIA 103
+ Q K+R + ++ QE VV+ L N + H LF GP G GKT+TA LA A
Sbjct: 2 TVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKA 61
Query: 104 HQLFGPE--------------LYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
+ + + V+E++A+ ++ R I+ V
Sbjct: 62 VNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIER---VQFRPAL 118
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
R YK+ I+DE ++ A NAL +T+E F + ++ + SRC
Sbjct: 119 AR-------YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRC 171
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+F F S M++ + I EG+NL+ AL ++ + G +R A LQ A +G
Sbjct: 172 QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGG 231
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
I+ + S+ G+ E V+ L + D A + +N + A+G
Sbjct: 232 EISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADG 276
|
Length = 585 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-17
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 41/151 (27%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV------VRTKIKTFA 138
+L YGPPGTGKTT A A+A +L + +E++ S+ V +R + F
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKEL------GAPFIEISGSELVSKYVGESEKRLR---ELFE 51
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY-SKVT 186
A + PC +I +DE D++ + N L ++ + S ++
Sbjct: 52 AAKKLA-------PC----VIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLS 100
Query: 187 RFFFIC--NYISRIIEPL-ASRCAKFRFKPL 214
+ I N ++ L R + PL
Sbjct: 101 KVIVIAATNRPDKLDPALLRGRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 86/334 (25%), Positives = 143/334 (42%), Gaps = 82/334 (24%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF---GP 109
KYRPK ++ QE V + L+ L+ H LF G G+GKT++A A L GP
Sbjct: 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGP 66
Query: 110 ELYKSR------------------VLELNASDDRGINVVR-----TKIK-TFAAVAVGSG 145
S ++E++A+ +RGI+ +R TK K + A
Sbjct: 67 ---SSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMAR------ 117
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME---TYSKVTRFFFICNYISRIIEPL 202
+KI I+DE +T++A NAL +T+E +Y K +I +PL
Sbjct: 118 ----------FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK---------FILATTDPL 158
Query: 203 A------SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
SR FRFK + + + S + I +EG++ + EAL L+ G LR +T
Sbjct: 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218
Query: 257 LQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-----IAEG 311
L A ++IT + + G++ P +E F + N++ + E
Sbjct: 219 LDQAIIYCKNAITESKVADMLGLLDPSKLEDFFQA-------ILNQDKEKLFELLKELED 271
Query: 312 YPASLLLSQVTLLLFVLMVQHSRQCLYIIYSLLI 345
Y A ++L ++ L L + + +S+L+
Sbjct: 272 YEAEMVLDEMMLFLKEKFLSKDSE-----FSILL 300
|
Length = 535 |
| >gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 29/269 (10%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S + K RP+ + Q+ VV L +++E+ + +F GP G GKT++A A A
Sbjct: 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61
Query: 106 L---FGP------ELYKSR---------VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L GP E + V+E++ + + + VR +IK S +
Sbjct: 62 LNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVR-QIKEEIMFPPASSR- 119
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
Y++ I+DE ++ A NAL +T+E F F + ++ + SRC
Sbjct: 120 --------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
F F+ LS E + + + +C E+ + + EAL ++ S G +R A T S
Sbjct: 172 HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSD 231
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGD 296
IT + + S G+ E +E L + + D
Sbjct: 232 ITLEQIRSKMGLTGDEFLEKLASSILNED 260
|
Length = 563 |
| >gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 8e-17
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 29/253 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q K+RPK ++ QE VVR LTN LE H LF G G GKTT A +A
Sbjct: 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS 61
Query: 106 L-------FGP--------ELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L P E+ R ++E++A+ + ++ +R + A A G+
Sbjct: 62 LNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDN-AQYAPTRGR- 119
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
+K+ I+DE +++ A NA+ +T+E + +F +I + SRC
Sbjct: 120 --------FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+F K + ++ S + HI +E + DA AL L+ + G +R A++ L A G +
Sbjct: 172 QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGT 231
Query: 268 ITSKDLISVSGVI 280
+ ++ ++ G I
Sbjct: 232 VNESEVRAMLGAI 244
|
Length = 527 |
| >gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 68/234 (29%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQ 105
S Q KYRPK+ D+ QE + R + N+L H +F G G GKTT A A
Sbjct: 2 SYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKA 61
Query: 106 LFGPEL-----YKSRVLE----------------LNASD-DRGINVVRTKIKTFAAVAVG 143
+ + Y V E LN S+ D N I+ V
Sbjct: 62 VNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRE-NVR 120
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
G ++G Y++ I+DE ++ A NA +T+E F F + +I +A
Sbjct: 121 YGPQKG-----RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
SRC +F FK + E + ++ IC EG+++DA+AL + +QG +R A + L
Sbjct: 176 SRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229
|
Length = 397 |
| >gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 79.8 bits (196), Expect = 2e-16
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 29/253 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
+ Q K+RPK D+ QE VV+ L N L+ H L G G GKTT A +A
Sbjct: 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61
Query: 106 L---------------FGPELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L ++ R +LE++A+ + GI+ +R ++ A A +G+
Sbjct: 62 LNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN-AQYAPTAGK- 119
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
YK+ I+DE +++ A NA+ +T+E + +F ++ + SRC
Sbjct: 120 --------YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCL 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+F + ++ + ++ + H+ + E + + AL L + G +R A++ L A L
Sbjct: 172 QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231
Query: 268 ITSKDLISVSGVI 280
+ D+ + G +
Sbjct: 232 VAENDVRQMIGAV 244
|
Length = 709 |
| >gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 42/269 (15%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFG 108
P+ KYRP ++ QE +V+VL+ T+ L G G GKTT+A IA +
Sbjct: 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69
Query: 109 PELY----------------------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
L ++E++A+ ++ +R I++ +
Sbjct: 70 SALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG-- 127
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+KI I+DE +++ A NAL +T+E F F + +I + SRC
Sbjct: 128 --------KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRC 179
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
++ + LS E + + +I +E L D EAL ++ S+G R A++ L AA +
Sbjct: 180 QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASM--- 236
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSG 295
S S ++IS P+V+ + + S
Sbjct: 237 SAKSDNIIS------PQVINQMLGLVDSS 259
|
Length = 507 |
| >gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 35/245 (14%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
KYRP KD+ Q+ +VR+L N P +L G G GKTT A I+ L GP
Sbjct: 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGP 65
Query: 110 ---------------ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
V+E++A+ + ++ ++ ++ + + S
Sbjct: 66 TSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISS---------- 115
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
+K+ I+DE ++ A NAL +T+E + +F + +I + SRC +F + +
Sbjct: 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKI 175
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+ + ++ I +E + D E+L ++ S G +R A+ L+ AA I S + I
Sbjct: 176 PTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAA------IYSNNKI 229
Query: 275 SVSGV 279
S V
Sbjct: 230 SEKSV 234
|
Length = 491 |
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 1e-15
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-- 103
S Q KYRP + D+ QE + + N+L H +F G G GKTT A A
Sbjct: 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKA 61
Query: 104 ---HQLFGPELYKSRVLE----------------LNASD-DRGINVVRTKIKTFAAVAVG 143
++ +Y V E LN S+ D N I+ V
Sbjct: 62 VNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRE-NVR 120
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
G ++G Y++ I+DE ++ A NA +T+E F F + +I +A
Sbjct: 121 YGPQKG-----RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
SRC +F FK + + + S++ IC EG+ +DA+AL ++ +QG +R A + L
Sbjct: 176 SRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSIL 229
|
Length = 620 |
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (186), Expect = 4e-15
Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 29/242 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S +YRP+ +VA QE V +L+ E P LF G G GKTT A A
Sbjct: 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61
Query: 106 LFGPELYKSR------------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L V+E++ + +RGI+ + ++K A+G
Sbjct: 62 LNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK-RLKE----AIGYAPM 116
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G YK+ I+DEA +T +A NAL +T+E F + + SRC
Sbjct: 117 EG-----RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
F F LSE + + + + EG++ D A+ ++ + G +R +++ L L S
Sbjct: 172 HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231
Query: 268 IT 269
+T
Sbjct: 232 LT 233
|
Length = 624 |
| >gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF 107
Q KYRP+ ++ Q V R L++ LE H LF G G GKTT A +A L
Sbjct: 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62
Query: 108 GPELYKSRVLELNAS-----DDRGINVV------RTKIKT----FAAVAVGSGQRRGGYP 152
S E+ A+ + R I+++ RTK++ V Q R
Sbjct: 63 CETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGR---- 118
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
+K+ ++DE ++ + NAL +T+E + +F F ++ + SRC +F +
Sbjct: 119 ---FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLR 175
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR-------RAITYLQGA 260
PL+ + ++ + I +E + D +A+ ++ +QG LR +AI Y QGA
Sbjct: 176 PLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGA 230
|
Length = 702 |
| >gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 2e-13
Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 29/310 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q KYRP+ +VA Q+ + L + LET H LF G G GKTT +A
Sbjct: 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC 61
Query: 106 LFGPELYKSR------------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L + ++E++A+ G+ + + + Q
Sbjct: 62 LNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETK---EILDNIQYMPSQG 118
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
R YK+ ++DE +++ + NAL +T+E + +F +I + SRC
Sbjct: 119 R-------YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+ K +S+ + ++ I +E +N D ++L ++ ++G LR A++ L A G
Sbjct: 172 QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE 231
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327
+ + + G+I E V + D + N+ A +L ++ + F
Sbjct: 232 LKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFA 291
Query: 328 LMVQHSRQCL 337
+ Q L
Sbjct: 292 CCIYSFTQSL 301
|
Length = 546 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 34/233 (14%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--LAIA 103
S Q K+RP+ + QE VVR LT+ LE H LF G G GKTT + LA +
Sbjct: 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKS 61
Query: 104 HQLFGP------------------ELYKSRV---LELNASDDRGINVVRTKIKTFAAVAV 142
G E+ R +E++A+ +RG++ + ++ A A
Sbjct: 62 LNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEM-AQLLDKAVYAP 120
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+G+ +K+ ++DE +T A NA+ +T+E + +F +I +
Sbjct: 121 TAGR---------FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
SRC +F K + + S + I EEG+ + AL L+ +QG +R A++
Sbjct: 172 LSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALS 224
|
Length = 700 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 6e-13
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
+L GPPG+GKTT A A+A +L P V+ ++ D + + +
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 144 SGQRRGG--------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV--------TR 187
P ++ILDE S+ + Q AL +E +
Sbjct: 61 GSGELRLRLALALARKLKP--DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
Query: 188 FFFICNYISRIIEPLASRCAKFRF 211
N + L R R
Sbjct: 119 VILTTNDEKDLGPALLRRRFDRRI 142
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-13
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GK T
Sbjct: 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56
|
Length = 846 |
| >gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 26/222 (11%)
Query: 57 PKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLF---GPELY 112
P + + EE L H +LF GP G GK T A +A+ + P
Sbjct: 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEA 78
Query: 113 KSRVL--ELNASDDRGI------NV------VRTKIKTFAAVAVGSGQRRGGY------P 152
+ + + R I N+ K F RR G+
Sbjct: 79 PETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSG 138
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
++I+I+D AD M +A NA+ +T+E F I + R++ + SRC K
Sbjct: 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLK 198
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
PL ++ + + H+ D E L S+G +R+A+
Sbjct: 199 PLDDDELKKALSHL--GSSQGSDGEITEALLQRSKGSVRKAL 238
|
Length = 351 |
| >gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
K TRF I N S+I+ + SRC + RFKP S I E + L
Sbjct: 39 TAPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRL------EAIAWLE-----DQGL 87
Query: 240 STLSSISQGDLRRAITYLQGAARL 263
++++++GD R+AI LQ A L
Sbjct: 88 EEIAAVAEGDARKAINPLQALAAL 111
|
Length = 230 |
| >gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 67 EEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYKSRV--LELNASD 123
E + + N++ H + G G GK+ A IA ++ G + V +E +
Sbjct: 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69
Query: 124 DRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPY----KIIILDEADSMTEDAQNALRR 177
+ I V +R I+ PY K+II+ ++ MTE AQNA +
Sbjct: 70 KKSIGVDDIRNIIEEVNK--------------KPYEGDKKVIIIYNSEKMTEQAQNAFLK 115
Query: 178 TMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237
T+E K +C + +I++ + SRC ++ LS+E + + + + ++ E
Sbjct: 116 TIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI----SYKYNDIKEE 171
Query: 238 ALSTLSSISQG 248
+ + S G
Sbjct: 172 EKKSAIAFSDG 182
|
Length = 313 |
| >gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-12
Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 31/222 (13%)
Query: 66 QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLF----GPELYKSRVLELN 120
Q + +LT ++ P LF GP G G+ AL L + + R+ E N
Sbjct: 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68
Query: 121 ASDDRGIN---VVRTKIKTFAAVAVGSGQRRGGYPC---------------PPY----KI 158
D + + K+ T A+ A +G +R P PP K+
Sbjct: 69 HPDLLWVEPTYQHQGKLIT-ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKV 127
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+++++A++M E A NAL +T+E T I ++ + SRC F LS+E
Sbjct: 128 VVIEDAETMNEAAANALLKTLEEPGNGT-LILIAPSPESLLPTIVSRCQIIPFYRLSDEQ 186
Query: 219 MSSRVLHIC-NEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ VL +EE LN++ L L+ S G I LQ
Sbjct: 187 LEQ-VLKRLGDEEILNINFPELLALAQGSPGAAIANIEQLQS 227
|
Length = 314 |
| >gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 40/214 (18%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQL----- 106
KYRP+ D+ QE +VR LTN ET ML G G GKTTTA +A L
Sbjct: 17 KYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFML-TGVRGVGKTTTARILARALNYEGP 75
Query: 107 ---FGPEL------------YKSR---VLELNASDDRGINVVRTKIKT--FAAVAVGSGQ 146
GP + + R VLE++A+ G++ +R I++ + V
Sbjct: 76 DGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV-----S 130
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
R YK+ I+DE ++ A NAL +T+E +F F I ++ + SRC
Sbjct: 131 AR-------YKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRC 183
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS 240
+F + + +V+++ + I +EG+ ++ EAL+
Sbjct: 184 QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALA 217
|
Length = 598 |
| >gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
KYRP +V QE V L++ L+ H LF GP G GKT++A +A L
Sbjct: 6 KYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP 65
Query: 107 -------------FGPELYKS-RVLELNASDDRGINVVRT-KIKTFAAVAVGSGQRRGGY 151
P S V+EL+A+ G++ R + + F A A Q R
Sbjct: 66 TATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA----QSR--- 118
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
Y+I I+DEA +T NAL + +E + F F +++ + SR + F
Sbjct: 119 ----YRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPF 174
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL-QGAARLFGSSITS 270
+ L M + + IC +EG+ +D + G R ++ L Q A + +T
Sbjct: 175 RLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTY 234
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGY 312
+ + + G +++ + D + ++I G+
Sbjct: 235 QRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGH 276
|
Length = 584 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 36/244 (14%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAH----QLFG 108
KYRP + V QE + L N + T H LF GP G GKTT A A Q
Sbjct: 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69
Query: 109 PE------------LYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
+ + R + EL+A+ + ++ +R I+ Q R P
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIE----------QVR--IP- 116
Query: 154 PP---YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
P YKI I+DE +++ A NA +T+E F +I+ + SRC F
Sbjct: 117 PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD 176
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
F + + + + ++ ++EG+ + EAL+ ++ + G +R A++ G +IT
Sbjct: 177 FNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITY 236
Query: 271 KDLI 274
K +I
Sbjct: 237 KSVI 240
|
Length = 614 |
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 35/231 (15%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAH 104
+ +P KYRP++ ++ QE + L N L + P LF GP GTGKT++A +A
Sbjct: 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60
Query: 105 QLF-----GP--------ELYKS-------RVLELNASDDRGINVVRTKIK--TFAAVAV 142
L P EL ++ V+E++A+ + G++ +R I+ FA V
Sbjct: 61 SLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV-- 118
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
Q R +K+ ++DE ++ A NAL +T+E F R++ +
Sbjct: 119 ---QAR-------WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253
SRC +F F+ + E M + I +E + ++ EAL+ ++ SQG LR A
Sbjct: 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDA 219
|
Length = 620 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 35/237 (14%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL--FGP- 109
KYRP+ ++ QE VV+ LTN L H LF G G GKTT + +A L GP
Sbjct: 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68
Query: 110 -----------------ELYKSRVL---ELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
++ R + EL+A+ +RG++ V+ ++ AV R
Sbjct: 69 GQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQ--AVYKPVQGR-- 124
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
+K+ ++DE +T A NA+ +T+E + +F ++ + SRC +F
Sbjct: 125 ------FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQF 178
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+P++ E + + + E + + +AL L+ ++G +R A++ L A FGS
Sbjct: 179 NLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS-LTDQAIAFGS 234
|
Length = 618 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
K+RPK + QE VVR LT+ L+ H LF G G GKTT + A L
Sbjct: 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV 68
Query: 107 -FGP--------ELYKSRVL---ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
P E+ + R + E++A+ +RG++ + ++ AV R
Sbjct: 69 TSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDAR------- 119
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
+K+ ++DE +T A NA+ +T+E +F +I + SRC +F K +
Sbjct: 120 -FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
+ S + I EE + + +AL L+ +QG +R A++
Sbjct: 179 PAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALS 219
|
Length = 830 |
| >gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 42/234 (17%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
QS P ++ RP+ +++ Q+ ++ R+L ++ ++ YGPPG GKTT A
Sbjct: 12 SQSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
IA+ ++ LNA G+ +R ++ + +R + I+ +
Sbjct: 72 IANH------TRAHFSSLNAV-LAGVKDLRAEVDR-------AKERLERH--GKRTILFI 115
Query: 162 DEADSMTEDAQNAL-----RRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPL 214
DE + Q+AL T+ T +F + + L SR FR K L
Sbjct: 116 DEVHRFNKAQQDALLPWVENGTITLIGATTENPYF-------EVNKALVSRSRLFRLKSL 168
Query: 215 SEEVMSS---RVLHICNEEG-----LNLDAEALSTLSSISQGDLRRAITYLQGA 260
S+E + R L E G ++L+ EA L ++ GD R + L+ A
Sbjct: 169 SDEDLHQLLKRALQDK-ERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELA 221
|
Length = 725 |
| >gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 6e-10
Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 39/303 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
+ Q K+RP+ ++V Q VVR L+N L+ H LF G G GKTT + +A
Sbjct: 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKC 61
Query: 106 L-------FGP--------ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
L P E+ + R +L D RTK++ + +
Sbjct: 62 LNCEKGVSANPCNDCENCREIDEGRFPDLFEVD----AASRTKVED-------TRELLDN 110
Query: 151 YPCPP----YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
P P +K+ ++DE ++ + NAL +T+E +F ++ + SRC
Sbjct: 111 IPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+F L +++ H+ EE + + AL L+ + G +R A++ L +
Sbjct: 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNG 230
Query: 267 SITSKDLISVSGVIPP----EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVT 322
+ D+ ++ G I P +++E L A ++GD L V ++ +G S L+ +
Sbjct: 231 KVLIADVKTMLGTIEPLLLFDILEALAA--KAGDRLLGC--VTRLVEQGVDFSNALADLL 286
Query: 323 LLL 325
LL
Sbjct: 287 SLL 289
|
Length = 509 |
| >gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA-----HQLFGP 109
P++ + L + + H L GP G GK T A +A G
Sbjct: 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGG 73
Query: 110 ELYKSRV--LELNASD-----------------DRGIN----VVRTKI--------KTFA 138
+ L ++ +R N +RT I +F
Sbjct: 74 DGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFF 133
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+ G R ++I+D AD M +A NAL + +E + F + + +R+
Sbjct: 134 GLTAAEGGWR---------VVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARL 184
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+ + SRC K R +PL+ E + L G +L + + L+++++G + RA+
Sbjct: 185 LPTIRSRCRKLRLRPLAPEDVID-ALA---AAGPDLPDDPRAALAALAEGSVGRALRLAG 240
Query: 259 GAA 261
G
Sbjct: 241 GDG 243
|
Length = 365 |
| >gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 73/294 (24%), Positives = 117/294 (39%), Gaps = 63/294 (21%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K + + S K E E KM + + ++P EK RPK ++ QEE ++ L L
Sbjct: 27 TNKITIDKES--KKELEKLNKMRAI-RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG 83
Query: 80 ANCPHMLFYGPPGTGKTTTA-----LAIAHQLFGPELYKSRVLELNAS----DDRGI--- 127
N H++ YGPPG GKT A A + P + +E++A+ D+RGI
Sbjct: 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNP-ASPFKEGAAFVEIDATTARFDERGIADP 142
Query: 128 --NVVRTKIKTFAAVAVGSGQRRGGYPCPPY--------KIIILDEADSMTEDAQNALRR 177
V I A +G G P P ++ +DE + N L +
Sbjct: 143 LIGSVHDPIYQGAG-PLGI----AGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLK 197
Query: 178 TMETYSKV---TRFFF-----ICNYISRIIE----------------------PLASRCA 207
+E KV + ++ I ++I I + L SRC
Sbjct: 198 VLED-RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV 256
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ F+PL +E + + + G+NL+ AL + + R A+ +Q AA
Sbjct: 257 EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNG-REAVNIVQLAA 309
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 531 |
| >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24 | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 46/255 (18%)
Query: 49 QPWVEKYRPKQVKDVA-HQEEVVRV----LTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+PWVEKY+P+ ++A H++++ V LE A +L GP G GK+TT ++
Sbjct: 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS 131
Query: 104 HQL-------FGPELYKSRVLELNASDDRGINVVR--TKIKTFAAV---AVGSGQRRGGY 151
+L P L + + + ++I+ F+ A Q G
Sbjct: 132 KELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDD 191
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISRIIEPLAS------ 204
KII++++ + AL + Y + R + I+ +E +
Sbjct: 192 LMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVF-IITESLEGDNNQRRLLF 250
Query: 205 --------------RCAKFRFKPLSEEVMSSRVLHICNEEGLNL-------DAEALSTLS 243
R + F P++ +M + I E ++ L
Sbjct: 251 PAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLC 310
Query: 244 SISQGDLRRAITYLQ 258
GD+R AI LQ
Sbjct: 311 QGCSGDIRSAINSLQ 325
|
All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637 |
| >gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 44/252 (17%)
Query: 49 QPWVEKYRPKQVKDVA-HQEEVVRV----LTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ W EKY+P++ ++A H++++ V LE+ +L GP G GK+TT ++
Sbjct: 7 ELWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLS 66
Query: 104 HQL-------FGPELYKSRVLELNASDDRGINVVR-----TKIKTFAAVAVGSGQRRGGY 151
+L PE + E D RG +V + + F G +GG
Sbjct: 67 KELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGG 126
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI------CNYISRIIEP---- 201
K+I+++E + R + + + CN +
Sbjct: 127 --LKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFG 184
Query: 202 ------------LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-- 247
+ R F P++ M ++ I +EG ++ S L I Q
Sbjct: 185 IDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEA 244
Query: 248 -GDLRRAITYLQ 258
GDLR AI LQ
Sbjct: 245 GGDLRSAINSLQ 256
|
Length = 490 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA----NCP- 83
SPEK E+E+K + + RPK + + QE+V L ++ A
Sbjct: 6 SPEKQEEEMKIERSL------------RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALD 53
Query: 84 HMLFYGPPGTGKTTTALAIAHQL 106
H+L +GPPG GKTT A IA++L
Sbjct: 54 HVLLFGPPGLGKTTLAHIIANEL 76
|
Length = 332 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 48/229 (20%), Positives = 76/229 (33%), Gaps = 47/229 (20%)
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT--KIKTFAA 139
+L YGPPGTGKT A A+A + +SR + + S+ V + I+
Sbjct: 276 PKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKNIRELFE 329
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETYSKVTRF 188
A R P II +DE DS+ L ++ K
Sbjct: 330 KA------RKLAPS----IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379
Query: 189 FFIC--NYISRIIEPLASRCAKFRFK---PLSEEVMSSRVLHICNEEGL-----NLDAEA 238
I N ++P R +F PL + + I + ++D E
Sbjct: 380 LVIAATNRP-DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEE 438
Query: 239 LSTLSSISQG-----DLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
L+ ++ G +R A L+ +T D + I P
Sbjct: 439 LAEITEGYSGADIAALVREAA--LEALREARRREVTLDDFLDALKKIKP 485
|
Length = 494 |
| >gnl|CDD|181214 PRK08058, PRK08058, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKS---------- 114
Q VV++L N++ H LF G GTGK TAL +A LF E
Sbjct: 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70
Query: 115 RVLELN-------ASDDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
R+ N A D + I +R + F+ V S + K+ I++ AD
Sbjct: 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNK----------KVYIIEHAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
MT A N+L + +E S T + +I+ + SRC F+PL E + R+
Sbjct: 121 KMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ- 179
Query: 226 ICNEEGLNLDAEALSTL 242
EEG+ +E+L+TL
Sbjct: 180 ---EEGI---SESLATL 190
|
Length = 329 |
| >gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 55/261 (21%), Positives = 89/261 (34%), Gaps = 46/261 (17%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA- 141
+++ YGP GTGKT T + +L V+ +N +RT + + +
Sbjct: 43 SNIIIYGPTGTGKTATVKFVMEELEES-SANVEVVYINC------LELRTPYQVLSKILN 95
Query: 142 -VGSGQRRGGYPCPPYK-------------IIILDEADSMTEDAQNALR---RTMETYSK 184
+G G K I+ILDE D++ + L R
Sbjct: 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKV 155
Query: 185 VTRFFFICN---YISRIIEPLASRCAKFR--FKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
+ N ++ + + S F P + E + +L EEG +
Sbjct: 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYD-ILRERVEEGFSAGVIDD 214
Query: 240 STLSSISQ------GDLRRAITYLQGAARLF---GSSITSKDLIS-VSGVIPPEVVEGLF 289
L I+ GD R+AI L+ A + GS S+D + I +V+E +
Sbjct: 215 DVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVL 274
Query: 290 AVCRSGDFDLANKEVNNIIAE 310
L K V I E
Sbjct: 275 K-----TLPLHQKIVLLAIVE 290
|
Length = 366 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 22/120 (18%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
+ G G+GKTT +A Q L RV+ + A + KI A+G
Sbjct: 6 IGVLTGESGSGKTTLLRRLARQ-----LPNRRVVYVEAPSLGTPKDLLRKI----LRALG 56
Query: 144 SGQRRGGYP------------CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191
G ++I+DEA ++ +A LR + K + +
Sbjct: 57 LPLSGGTTAELLEAILDALKRR-GRPLLIIDEAQHLSLEALEELRDLYDLSEKGIQVILV 115
|
Length = 124 |
| >gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
Y++ +++ AD+M E A NAL +T+E + F + + R++ + SRC ++ P S
Sbjct: 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPS 168
Query: 216 EEVMSSRVLHICNEEGLNLDAEAL--------STLSSISQGDL 250
+ +G+ + A AL TL+ + +G L
Sbjct: 169 TAQAMQWL----KGQGITVPAYALKLNMGSPLKTLAMMKEGGL 207
|
Length = 319 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-06
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETA---NCP--HMLFYGPPGTGKTTTALAIAHQL 106
RP+++ + QE+V L +E A H+L YGPPG GKTT A IA+++
Sbjct: 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 74
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAIAHQL 106
RPK + + QE+V L +E A H+L YGPPG GKTT A IA+++
Sbjct: 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75
|
Length = 328 |
| >gnl|CDD|203973 pfam08542, Rep_fac_C, Replication factor C C-terminal domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 9e-06
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQHSRQCL 337
G PPE ++ + GDFD A + + ++ EG A +L Q+ +L L + S +
Sbjct: 1 GWPPPEDIKEILDSILKGDFDEARETLYELLVEGISAEDILKQLHEVLIRLDIPDSLKLE 60
Query: 338 YIIY 341
I
Sbjct: 61 IIKE 64
|
This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A. Length = 89 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
HMLF GPPGTGKTT A +A G L K V E++ +D G + ++ KT +
Sbjct: 314 HMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNEIIDS 373
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTE 169
G ++ LDEA ++ E
Sbjct: 374 ALG-----------GVLFLDEAYTLVE 389
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQL 106
H+L YGPPG GKTT A IA+++
Sbjct: 32 HLLLYGPPGLGKTTLAHIIANEM 54
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
| >gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
RP+ ++ QE ++ L + + H++ YGPPG GKTT A
Sbjct: 149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAA 192
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 615 |
| >gnl|CDD|221912 pfam13086, AAA_11, AAA domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 35/186 (18%), Positives = 58/186 (31%), Gaps = 44/186 (23%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVL-------------ELNASDDRGINVVRT 132
L GPPGTGKTTT + I QL +VL E G+ +VR
Sbjct: 21 LIQGPPGTGKTTTIVEIIKQLLSN-APGKKVLVCAPSNSAVDNILERLLEQKFGLKIVR- 78
Query: 133 KIKTFAAVAVGSGQRRGGYPCPPYKI--IILDEADSMTEDAQNALRRTMETYSKVTRFFF 190
+GS R Y + ++ + + + + + E
Sbjct: 79 ---------IGSPAREIHEDVLQYSLEYLLEAKFEQLLKRIRKLKSLLEEKSKLKRERRK 129
Query: 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDL 250
+ + I ++ + L R E + + V +C +TLS L
Sbjct: 130 LRSEIKKLKKELERL----RKSIRKEILDEADV--VC------------TTLSGAGSSLL 171
Query: 251 RRAITY 256
+
Sbjct: 172 EGLKKF 177
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Length = 220 |
| >gnl|CDD|235898 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 49/171 (28%)
Query: 83 PH-MLFYGPPGTGKTTTALAIAHQL--------------------FG----PELYKSR-- 115
PH +L +G G GK A +A L F P+ R
Sbjct: 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPE 80
Query: 116 VLELNAS----------DDRGINVVRT-----KIKTFAAV--AVGSGQRRGGYPCPPYKI 158
L A D G + KI+ A+ G G RGG ++
Sbjct: 81 ALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGA-----RV 135
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
++L A+++ A NAL +T+E T F + I R++ + SRC +F
Sbjct: 136 VVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQF 186
|
Length = 342 |
| >gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 25/127 (19%)
Query: 83 PHMLF-YGPPGTGKTTTALAIAHQLFGPELYKSRVLEL-NASDDRGINVVRTKIK----- 135
+ G PGTGKT AL + +L +L ++ V N + V+ +
Sbjct: 1 KAVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPL---VLVLYEALAGDLKV 57
Query: 136 TFAAVAVGSGQRRGGY--PCPPYKIIILDEA----------DSMTEDAQNALRRTMETYS 183
+ P ++I+DEA + + Q L M+ +
Sbjct: 58 RKKKLFRKPTSFINNLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQ--LDEIMKR-A 114
Query: 184 KVTRFFF 190
KV FF
Sbjct: 115 KVVVFFI 121
|
This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function. Length = 348 |
| >gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
K+++++ A++M +A NAL +++E S T I + SR++ + SRC + PL
Sbjct: 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC-PLP 165
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSS 244
S + L E + L TL+
Sbjct: 166 SNEESLQWLQQALPESDERERIELLTLAG 194
|
Length = 328 |
| >gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 41/162 (25%)
Query: 86 LFYGPPGTGKTTTALAIAHQL--------------------FG----PELYKSRVLELNA 121
LF G G GKT A A L FG P+ Y + L+
Sbjct: 25 LFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY--EITPLSD 82
Query: 122 SDDRGINVVRTKIKT------FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
+ G +++ KI + G R +I++ A+SM A N+L
Sbjct: 83 EPENGRKLLQIKIDAVREIIDNVYLTSVRGGLR---------VILIHPAESMNLQAANSL 133
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
+ +E F + + +++ + SRC K S E
Sbjct: 134 LKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHE 175
|
Length = 325 |
| >gnl|CDD|181190 PRK07993, PRK07993, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
K++ L +A +T+ A NAL +T+E + T FF C +R++ L SRC
Sbjct: 110 KVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159
|
Length = 334 |
| >gnl|CDD|224383 COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 16/196 (8%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI--CNYISRI------IEPLASRCAK 208
++++L A+ +N + T + N + + ++ LA
Sbjct: 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVV- 134
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267
KPL E + + E GL +D EA+ L G+L ++ A
Sbjct: 135 VECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKE 194
Query: 268 ITSKDLIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLL----SQVT 322
IT +D+ VS V + + A+ + GD A + + +++ EG LL Q
Sbjct: 195 ITLEDVEEVVSDVAEFNIFDLADALLK-GDVKKALRLLRDLLLEGEEPLKLLAALTRQFR 253
Query: 323 LLLFVLMVQHSRQCLY 338
LLL + + + L
Sbjct: 254 LLLQLKALAEKGKSLQ 269
|
Length = 334 |
| >gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPE 110
L GP G GKT TALA+A L+G E
Sbjct: 600 LLVGPSGVGKTETALALAELLYGGE 624
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 86 LFYGPPGTGKTTTALAIAHQ 105
L YGPPGTGKT A A+AH+
Sbjct: 169 LLYGPPGTGKTLLAKAVAHE 188
|
Length = 389 |
| >gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 38/147 (25%)
Query: 62 DVAHQEEVVRVLTN------TLETANCPHM----LFYGPPGTGKTTTALAIAHQLFGPEL 111
D+ QE VV L A M LF GPPG+G++ A A A L +
Sbjct: 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP 65
Query: 112 YK---------SRVLELNASDDR---------GINVVRTKIKTFAAVAVGSGQRRGGYPC 153
+ VL D R G++ VR + AA +G
Sbjct: 66 DEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTI-AARRPSTG-------- 116
Query: 154 PPYKIIILDEADSMTEDAQNALRRTME 180
++I+++++AD +TE A NAL + +E
Sbjct: 117 -RWRIVVIEDADRLTERAANALLKAVE 142
|
Length = 394 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
+L GPPGTGK+ A +A L P Y + D +G + ++ +
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
R G +I +LDE + D N+L
Sbjct: 61 VRAAREG-------EIAVLDEINRANPDVLNSL 86
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQ-------LFGPEL 111
L YGPPGTGKT A A+A+Q + G EL
Sbjct: 189 LLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221
|
Length = 406 |
| >gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
HM+F G PGTGKTT A + L K ++E+ +D G + T KT +
Sbjct: 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIK- 102
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYS 183
+ GG ++ +DEA S+ ++A + L + ME
Sbjct: 103 ---KALGG-------VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR 141
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group [Cellular processes, Sporulation and germination]. Length = 261 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL---ELNASDDRGINVVRTKIKTFAAV 140
H+L GPPG GKT A A+A + G R+ +L SD G +
Sbjct: 45 HVLLEGPPGVGKTLLARALA-RALGLPF--VRIQCTPDLLPSDLLGTYAYAALLL----- 96
Query: 141 AVGSGQRR---GGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
G+ R G I++LDE + + QNAL +E
Sbjct: 97 --EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137
|
Length = 329 |
| >gnl|CDD|177083 CHL00181, cbbX, CbbX; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLF 107
HM F G PGTGKTT AL +A L+
Sbjct: 61 HMSFTGSPGTGKTTVALKMADILY 84
|
Length = 287 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K L+
Sbjct: 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLT 179
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
++ + +++ HI +E L +AEAL+ L+ + G +R A++ L A FG
Sbjct: 180 QDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALS-LTDQAIAFGG 229
|
Length = 944 |
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTA 99
K+RP+ +V QE V+ L N L+ H LF G G GKTT A
Sbjct: 9 KWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIA 55
|
Length = 647 |
| >gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNAS----DDRGINVV--RT--K 133
+L GP G GK ALA+A + R +L A+ D + ++ + RT K
Sbjct: 29 LLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88
Query: 134 IKTFAAVAVGSGQRRGGYPCPPY---KIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190
++T + + P Y +++I+D AD++ A NAL +T+E S +
Sbjct: 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWL 148
Query: 191 ICNYISRIIEPLASRCAKFRFK-PLSEEVMS 220
I +R+ + SRC + FK P + E ++
Sbjct: 149 ISAQPARLPATIRSRCQRLEFKLPPAHEALA 179
|
Length = 319 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.004
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
DV QE+ R L + A ++L GPPG+GKT A
Sbjct: 3 ADVKGQEQAKRALE--IAAAGGHNLLMIGPPGSGKTMLA 39
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 100.0 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 100.0 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 100.0 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 100.0 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 100.0 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 100.0 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 100.0 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 100.0 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 100.0 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 100.0 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 100.0 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 100.0 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 100.0 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 99.98 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 99.97 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.97 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.97 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.95 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.94 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.93 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.93 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.93 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.93 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.93 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.93 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.93 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.91 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.91 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.9 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.9 | |
| PRK05629 | 318 | hypothetical protein; Validated | 99.9 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 99.89 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.89 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 99.89 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 99.89 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.89 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 99.88 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 99.88 | |
| PRK05907 | 311 | hypothetical protein; Provisional | 99.88 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.88 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.87 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 99.87 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.87 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.87 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 99.87 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.87 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.87 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.87 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.86 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.86 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 99.86 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.86 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.86 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.86 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 99.85 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.85 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.84 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.84 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 99.84 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 99.83 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.83 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.82 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.82 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.81 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 99.81 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 99.81 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.8 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.8 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.8 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.79 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.79 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.79 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 99.79 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.79 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.78 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.78 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.78 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.77 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.77 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.77 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.77 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.77 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.77 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 99.77 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.76 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.76 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 99.76 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.75 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 99.74 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.74 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.74 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 99.73 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 99.72 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 99.71 | |
| PRK06526 | 254 | transposase; Provisional | 99.71 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.71 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.71 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.71 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.71 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.7 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 99.69 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.68 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.67 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.67 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.66 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.66 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.66 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.66 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.66 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.66 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 99.66 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.65 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.65 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.65 | |
| PRK08181 | 269 | transposase; Validated | 99.65 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.64 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.64 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 99.64 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.64 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.64 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.63 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.63 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.63 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.63 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.62 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.62 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 99.62 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.62 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 99.62 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.62 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 99.62 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.61 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.61 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.61 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.61 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.6 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.6 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 99.6 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.6 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 99.59 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.59 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.58 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.58 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.58 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.58 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.58 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.58 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 99.57 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.57 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.56 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 99.56 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 99.55 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.54 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.54 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 99.53 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 99.53 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.53 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.53 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 99.53 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.52 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.52 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.49 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.48 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.48 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.48 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.48 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 99.46 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.46 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.45 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.45 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 99.44 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.43 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.41 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.41 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.39 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.38 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.38 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.38 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.37 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.37 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.36 | |
| PHA02244 | 383 | ATPase-like protein | 99.36 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 99.35 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.34 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.34 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 99.34 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.34 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.33 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 99.33 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.32 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.3 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 99.3 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 99.3 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 99.3 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 99.29 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.26 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 99.25 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.25 | |
| PRK12377 | 248 | putative replication protein; Provisional | 99.23 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.22 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 99.22 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.2 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 99.19 | |
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 99.17 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 99.16 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 99.15 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 99.14 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.13 | |
| PRK08116 | 268 | hypothetical protein; Validated | 99.13 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 99.12 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 99.12 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 99.11 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.09 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 99.08 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.08 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 99.08 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 99.07 | |
| PF13173 | 128 | AAA_14: AAA domain | 99.05 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 99.03 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 99.02 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.99 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.99 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.95 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 98.93 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.91 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.9 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.9 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.89 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 98.87 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.86 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 98.84 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 98.83 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 98.82 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.8 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.79 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.77 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 98.76 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.75 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 98.7 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.68 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.63 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 98.62 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 98.59 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 98.58 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 98.56 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.54 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 98.54 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 98.52 | |
| PHA02774 | 613 | E1; Provisional | 98.52 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 98.52 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.52 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 98.49 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 98.48 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 98.46 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 98.45 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 98.44 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.42 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 98.39 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 98.36 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 98.29 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 98.29 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 98.28 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 98.28 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 98.26 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.26 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 98.26 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 98.23 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 98.17 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.13 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 98.13 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 98.12 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.12 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 98.11 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 98.09 | |
| PTZ00202 | 550 | tuzin; Provisional | 98.07 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 98.06 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.04 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.02 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.99 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 97.99 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.99 | |
| PF12169 | 143 | DNA_pol3_gamma3: DNA polymerase III subunits gamma | 97.98 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.97 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.95 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.95 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 97.94 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.91 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 97.9 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.88 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.88 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 97.87 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.87 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 97.87 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.87 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.86 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.85 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.85 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 97.84 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 97.82 | |
| PF05272 | 198 | VirE: Virulence-associated protein E; InterPro: IP | 97.8 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.8 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.8 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.79 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.76 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 97.75 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.73 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.71 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 97.7 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 97.69 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 97.67 | |
| PF00519 | 432 | PPV_E1_C: Papillomavirus helicase; InterPro: IPR00 | 97.65 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.64 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.64 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.62 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.62 | |
| COG2842 | 297 | Uncharacterized ATPase, putative transposase [Gene | 97.59 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 97.56 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.55 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.54 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.53 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.53 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.52 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 97.52 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.51 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 97.5 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 97.5 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.49 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 97.47 | |
| KOG1808 | 1856 | consensus AAA ATPase containing von Willebrand fac | 97.46 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 97.45 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.45 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 97.44 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.43 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 97.43 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 97.43 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.43 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 97.42 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.41 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 97.41 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.41 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.4 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 97.39 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.39 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.38 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 97.38 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.37 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 97.37 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.37 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.36 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.36 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 97.36 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 97.36 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 97.35 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.35 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 97.35 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.34 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 97.32 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.32 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.31 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.31 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.3 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.3 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 97.3 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.3 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 97.3 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.3 | |
| KOG3928 | 461 | consensus Mitochondrial ribosome small subunit com | 97.29 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 97.29 | |
| PF08303 | 168 | tRNA_lig_kinase: tRNA ligase kinase domain; InterP | 97.29 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.28 | |
| PF13337 | 457 | Lon_2: Putative ATP-dependent Lon protease | 97.26 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 97.26 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.26 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.26 | |
| PF13479 | 213 | AAA_24: AAA domain | 97.25 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 97.25 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.23 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 97.23 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.22 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 97.22 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 97.2 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 97.19 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.18 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.18 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.18 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 97.17 | |
| PLN02674 | 244 | adenylate kinase | 97.17 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 97.17 | |
| PRK06696 | 223 | uridine kinase; Validated | 97.16 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.15 | |
| TIGR00174 | 287 | miaA tRNA isopentenyltransferase (miaA). Catalyzes | 97.14 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 97.14 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 97.14 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 97.14 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.13 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 97.12 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.12 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.11 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 97.1 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.1 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.1 | |
| TIGR01613 | 304 | primase_Cterm phage/plasmid primase, P4 family, C- | 97.09 | |
| KOG2383 | 467 | consensus Predicted ATPase [General function predi | 97.09 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 97.09 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 97.09 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 97.08 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.07 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 97.07 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 97.07 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.06 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 97.06 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 97.06 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 97.06 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 97.05 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.04 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.03 | |
| PRK03731 | 171 | aroL shikimate kinase II; Reviewed | 97.02 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 97.01 | |
| PF10923 | 416 | DUF2791: P-loop Domain of unknown function (DUF279 | 97.01 | |
| PRK13946 | 184 | shikimate kinase; Provisional | 97.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 97.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 97.0 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.0 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 96.97 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 96.97 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 96.96 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 96.96 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.96 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 96.96 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 96.95 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 96.94 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 96.94 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 96.93 | |
| TIGR01663 | 526 | PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | 96.93 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 96.93 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.93 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 96.92 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 96.91 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 96.9 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 96.88 | |
| KOG3354 | 191 | consensus Gluconate kinase [Carbohydrate transport | 96.87 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.86 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.85 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 96.85 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.85 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 96.85 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 96.84 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 96.84 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 96.84 | |
| PLN02200 | 234 | adenylate kinase family protein | 96.84 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 96.83 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 96.82 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.82 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 96.81 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 96.81 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.78 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 96.77 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 96.77 | |
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 96.76 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 96.76 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.75 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 96.75 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 96.75 | |
| PF05872 | 502 | DUF853: Bacterial protein of unknown function (DUF | 96.75 |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=318.11 Aligned_cols=280 Identities=53% Similarity=0.829 Sum_probs=257.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
..+.|++||+|++|++++||+.+++.|.+.+.....|++|||||||||||++|.+++++++|++.....+.+.++++.++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 34459999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...++..++.+........ ...+....+++|+|+||+|.++.+.|+.|++.+|+++.+++||++||...++++.+.+||
T Consensus 102 isvvr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ccchhhhhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 9999999988887755433 333445567899999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHhhCCCCHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-SKDLISVSGVIPPEVV 285 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it-~~~v~~~~~~~~~~~~ 285 (345)
..+.|+++..+++...|+.+|.++|+.++++++..|++.|+||+|+|+..||.++. .|++|| ...++.+.|..+++.+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~GvVp~~~l 259 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELAGVVPDEKL 259 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 578899 4555666668999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 286 ~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
.++++.+..+|..+..+..+++.+.|++|.+++++|...+...
T Consensus 260 ~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~ 302 (346)
T KOG0989|consen 260 LDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDI 302 (346)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888887766
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=321.58 Aligned_cols=276 Identities=25% Similarity=0.385 Sum_probs=249.3
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
...++|++||||.+|++++||++++..|..++..++.++ +||+||+|||||++|+.+++.++|...
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 467899999999999999999999999999999999887 799999999999999999999987532
Q ss_pred -----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
...+++++++....+.+.+++........+. .++++|+||||+|.++...++.|++.+|+++.++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~----------~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM----------GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhh----------cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCce
Confidence 2336778887766777888777666543221 2367899999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.||++|+...++.+++++||..+.|.+++.+++.+++++++..+|+.++++++..|++.++|++|.+++.|+.+..+.++
T Consensus 153 iFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~ 232 (484)
T PRK14956 153 VFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDS 232 (484)
T ss_pred EEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777667
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~-~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.||.+.|.++++..+++.++++++++.+++. .+++.++.+|++.|+||..++..|...+|.+++-
T Consensus 233 ~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~ 298 (484)
T PRK14956 233 KLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLI 298 (484)
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999875 6899999999999999999999999999998753
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=312.22 Aligned_cols=271 Identities=42% Similarity=0.659 Sum_probs=243.6
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.||++||||.+|++++|+++++..|..++..+..++++|+||||||||++|+++++++.+... ...++++++++..+.+
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 489999999999999999999999999999999999999999999999999999999977543 3468889998888888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcccee
Q 019145 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~ 208 (345)
.+++.+..+...... ...+++++++|||+|.++...++.|+++++.++..+.+|++||...++.+++++||..
T Consensus 80 ~vr~~i~~~~~~~~~-------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 80 VVRNKIKMFAQKKVT-------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHHHhcccc-------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 888777765443211 1123578999999999999999999999999888899999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHH
Q 019145 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288 (345)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l 288 (345)
+.|++++.+++..++..+++++|+.+++++++.+++.++||+|.+++.|+.+... .+.||.++|.++.+...++.++.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~-~~~i~~~~v~~~~~~~~~~~i~~~ 231 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG-FGFVNQENVFKVCDQPHPLHVKNI 231 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999965532 457999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 289 ~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
++++..++.+.++..+.+|+..|++|..|+..|.+.+...
T Consensus 232 i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~ 271 (319)
T PLN03025 232 VRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY 271 (319)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998777644
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=284.58 Aligned_cols=279 Identities=40% Similarity=0.637 Sum_probs=258.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
-..||++||||..+.|++|+++.+..+.-..+.+..||++|.|||||||||.+.++|+++.++.. ...+.++|+++.++
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeRG 91 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDERG 91 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCccccc
Confidence 34579999999999999999999999999999999999999999999999999999999976543 34688999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
++.++..++.|++.... .+.++.+++|+||+|.++...|.+|.+.+|-++..++|.++||...++.+++.|||
T Consensus 92 IDvVRn~IK~FAQ~kv~-------lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRC 164 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVT-------LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRC 164 (333)
T ss_pred cHHHHHHHHHHHHhhcc-------CCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhh
Confidence 99999999999877544 23457789999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~ 286 (345)
.++.|..+++.++...+..+++.+++.++++.++.++.-+.||+|.++|+||...... +.|+.+.|-.+.+..++..+.
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~-g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991|consen 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGF-GLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccc-cccchhhhhhccCCCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999887544 459999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhh
Q 019145 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQHSR 334 (345)
Q Consensus 287 ~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~ 334 (345)
+++.++..++++.|.+++..+.+.|++|.+|+..++|..+++-++++.
T Consensus 244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~ 291 (333)
T KOG0991|consen 244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESL 291 (333)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999999999888555543
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=326.34 Aligned_cols=274 Identities=22% Similarity=0.336 Sum_probs=251.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||+++++.|.+++..++.+| +||+||+|||||++|+.+++.++|...
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 57899999999999999999999999999999999998 599999999999999999999988532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+.+.+++.+......+ ..++++|+||||+|+++...++.|++++|+++.++.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p----------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP----------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc----------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 223578888877788888888777654332 234788999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.++++.+.+||..++|.+++.+++..++..+++++|+.++++++..|++.++|++|.+++.++++..+.++.
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~ 231 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGK 231 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776678
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++...+..+|++++++..++.+.++..++.|...|+++..++..|...++++++
T Consensus 232 It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~ 294 (509)
T PRK14958 232 VLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAI 294 (509)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998865
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=315.58 Aligned_cols=275 Identities=24% Similarity=0.348 Sum_probs=250.3
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
+.+.||+++|||.+|++++||++++..|...+..++.++ +||+||+|||||++|+++++.++|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 678899999999999999999999999999998888765 799999999999999999999987431
Q ss_pred ---------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...+++++++....+.+.+++.++.....+ ..++++|+||||+|.++...++.|+++++++
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P----------~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP----------LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc----------ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 234677888877778888888877654332 2357889999999999999999999999999
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.++.+|++++...++++++.+||..+.|.+++.+++..++..+++++|+.++++++..|++.++||+|.+++.|++++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhC---CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 263 LFG---SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 263 ~~~---~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+++ +.||.++|.++++...+..+|++++++..++...|+..+++|+..|++|..++..|..+++.++.
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~ 306 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNK 306 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 764 36999999999999999999999999999999999999999999999999999999999997764
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=320.69 Aligned_cols=275 Identities=24% Similarity=0.332 Sum_probs=250.6
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+++.|.+||||++|++++||+++++.|.+++..++.+|. ||+||+|||||++++.+++.++|...
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 577899999999999999999999999999999998885 99999999999999999999987532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...++++++..+..+.+.+++.++...... ..++++|+||||+|+|+...++.|++.||+++.++.
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P----------~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP----------VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhcc----------ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 123578888887778888888776654322 224678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++||...++.+.|+|||..+.|.+++.+++.++|.++++.+++.++++++..|++.++||+|++++.++.+..+.++.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~ 231 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE 231 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|+.+.|..+++......++.+++++..++...++..+++|...|.+...++..|...+++++..
T Consensus 232 It~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~ 295 (830)
T PRK07003 232 VTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWA 295 (830)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987653
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=313.53 Aligned_cols=270 Identities=23% Similarity=0.401 Sum_probs=248.3
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|++||||.+|++++||+++++.|.+++..++.++ +||+||+|+||||+|+.+|+.++|...
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 37899999999999999999999999999999886 899999999999999999999987432
Q ss_pred -CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 019145 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
...+++++++.+..+.+.+++.+......+ ..++++++||||+|.++...++.|++++|++++++.+|+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P----------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLP----------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhcc----------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 356789999988888999988887755432 235789999999999999999999999999999999999
Q ss_pred ecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCH
Q 019145 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~ 270 (345)
+++...++.+++++||..+.|.+++.+++..++..+++++|+.++++++..|++.++|++|.+++.++++..+.++.||.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~ 231 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 271 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
++|.++++......+|++++++.+++..+++..+.+|+..| +|..++..|...++.+..
T Consensus 232 e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~ 290 (491)
T PRK14964 232 KSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICY 290 (491)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 788999999999887754
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=318.18 Aligned_cols=273 Identities=22% Similarity=0.330 Sum_probs=248.9
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|.+||||.+|++++||+++++.|.+++..++.+| +||+||+|||||++|+++++.++|...
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 47799999999999999999999999999999999 599999999999999999999987431
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++....+++.+++........+ ..++++|+||||+|.++.+.++.|++++|+++.++.|
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P----------~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAP----------AQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhh----------hcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 235677888877678888887765544332 2246789999999999999999999999999999999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CCC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~~ 267 (345)
|++|+...++.+++++||..+.|.+++.+++.+++.++++++|+.++++++..+++.++||+|.++++|++++.+. ++.
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~ 231 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876 567
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.++++......++++++++..++...++..+.+++..|.++..++..|.+++|+++.-+
T Consensus 232 It~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k 296 (584)
T PRK14952 232 VTYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQ 296 (584)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999997543
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=318.01 Aligned_cols=274 Identities=23% Similarity=0.350 Sum_probs=250.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+++.|++||||.+|++++||++++..|.+++..++.+|. ||+||+|+|||++++.+++.++|...
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 578899999999999999999999999999999999885 99999999999999999999987421
Q ss_pred ---------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...+++++++....+++.+++.++.....+ ..++++|+||||+|+++...++.|++.+|++
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p----------~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP----------VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc----------ccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 223677888877778888888876643322 2346889999999999999999999999999
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.++.||++|+.+.++...+++||..++|.+++.+++..++++++.++|+.++++++..|++.++||+|.+++.++++..
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia 231 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA 231 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+.++.||.++|.++++......+|++++++..++...++..+.+|...|+++..++..|...++++++
T Consensus 232 ~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~ 299 (618)
T PRK14951 232 FGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAV 299 (618)
T ss_pred hcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999999999999999999999998874
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=302.08 Aligned_cols=275 Identities=23% Similarity=0.306 Sum_probs=244.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++++|++||||.+|++++||+++++.+.+.+..++.+| ++|+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 56799999999999999999999999999999998888 4999999999999999999999764321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++......+.++..+...... +..++++++||||+|.++...++.|++.+++++.++.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~----------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYS----------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcC----------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1245556655445556666555543321 1234678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+...++.+++.+||..++|.|++.+++.+++..+++.+|+.+++++++.+++.++||+|.+++.+++++.+..+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~ 231 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGN 231 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999998876678
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
||.++|.++++...+..+|++++++..++...++..+.++...|++|..++..|...++.++.-
T Consensus 232 It~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~ 295 (363)
T PRK14961 232 INIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMS 295 (363)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988753
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=311.93 Aligned_cols=273 Identities=23% Similarity=0.349 Sum_probs=248.1
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~--------------- 111 (345)
+++|++||||.+|++++||+++.+.|.+++..++.++ +||+||+|+|||++|+++|+.++|...
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 5689999999999999999999999999999998887 599999999999999999999987431
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++.+..+.+.+++.+......+ ..++++|+||||+|+++...++.|++.+++++.++.|
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P----------~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP----------TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhh----------hcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 233678888887778888888776654332 1246789999999999999999999999999999999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~i 268 (345)
|++|+.+.++...+++||..+.|.+++.+++.+++.++++++|+.++++++..|++.++||+|.+++.++++..+.++.|
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~I 231 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAV 231 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887767789
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 269 t~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
|.++|.++++......+|++++++..++...++..+.++...|.++..++..|...++.++.
T Consensus 232 T~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll 293 (702)
T PRK14960 232 HHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELAL 293 (702)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998764
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=307.97 Aligned_cols=270 Identities=29% Similarity=0.437 Sum_probs=242.5
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|.++|||.+|++++||+++...|...+..+..++ ++|+|||||||||+|+++++.+.|...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58999999999999999999999999999999877 799999999999999999999976432
Q ss_pred -CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 019145 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
....++++++....+.+.++.........+ ..+++++|||||+|.++...++.|++.+++++..+.+|+
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p----------~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRP----------MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhCh----------hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 123678888876677777776554433221 224678999999999999999999999999988999998
Q ss_pred ecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCH
Q 019145 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~ 270 (345)
+++.+.++.+++.+||..+.|.+++.+++..+++.+++.+|+.++++++..|++.++||+|.+++.|+.++.+.++.||.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~ 232 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITL 232 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 88878899999999999999999999999999999999999999999999999999999999999999988877767999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 271 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
++|.++++....+.++++++++.+++.++|+.++.+|+..|++|..|++.|.......+
T Consensus 233 e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi 291 (472)
T PRK14962 233 ETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL 291 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999888665
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=318.18 Aligned_cols=276 Identities=25% Similarity=0.402 Sum_probs=252.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
+++.|++||||.+|++++||+++++.|.+++..+..+| +||+||+|+|||++++++++.++|....
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 56789999999999999999999999999999999888 5999999999999999999999876432
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.+++.+......+ ..++++|+||||+|.++...++.|++++|+++.++.
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p----------~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP----------SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc----------ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 44677888777677888877766654322 235789999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.++++++++||..+.|.+++.+++..++..+++++|+.++++++..+++.++||+|.+++.|+++..+.++.
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~ 231 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDA 231 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.++++....+.++++++++..++...++..+.++...|.++..++..|.++||+++.-+
T Consensus 232 It~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k 296 (576)
T PRK14965 232 VGDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLR 296 (576)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997433
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=310.09 Aligned_cols=274 Identities=24% Similarity=0.420 Sum_probs=248.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
+..+|+++|||.+|++++||+.++..|.+++..++.++ +||+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45789999999999999999999999999999988877 7899999999999999999999875422
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.++..+..+...+. .++++|+||||+|.++...++.|++++++++..+.
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~----------~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tv 151 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT----------TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVV 151 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchh----------hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEE
Confidence 235677777665677778877766544322 24578999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+.+.++.+++++||..+.|.+++.+++..++..++.++|+.++++++..+++.++||+|.+++.++.++.+.+..
T Consensus 152 fIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~ 231 (605)
T PRK05896 152 FIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSE 231 (605)
T ss_pred EEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
|+.++|.++++......+|.+++++..++...++.++.+|...|++|..++..|...+|.++.
T Consensus 232 It~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~ 294 (605)
T PRK05896 232 IDIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLV 294 (605)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999889899999999999999999999999999999999999999999998874
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=317.76 Aligned_cols=275 Identities=24% Similarity=0.360 Sum_probs=247.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||++++..|++++..++.+|. ||+||+|||||++|+++++.++|...
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 578999999999999999999999999999999999996 89999999999999999999988532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
....++++++.+..+.+.++.++..+...+ ..++++|+||||+|+|+...++.|++.||+++.+++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P----------~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP----------SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhh----------hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 122356677665567777887776654332 124678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+...++.+.|++||..+.|.+++.+++..+|.+++..+++.++++++..|++.++|++|.+++.++.+..+.++.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~ 231 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQ 231 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666678
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
++.+.|.++++......+..+++++.+++...++..+..|+..|.++..|++.|...+|.+++-
T Consensus 232 It~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~ 295 (944)
T PRK14949 232 VMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLT 295 (944)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888899999999999999999999999999999999999999999988753
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=312.79 Aligned_cols=275 Identities=24% Similarity=0.361 Sum_probs=249.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++++|.+||||.+|++++||+++++.|.+++..++.++ +||+||+|+|||++|+++++.++|....
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 57789999999999999999999999999999998887 6999999999999999999999875321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.+++.+......+ ..++++|+||||+|.++...++.|++.+++++.++.
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P----------~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP----------TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhh----------hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 23567778777778888888776543332 124678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+...++...+++||..+.|.+++.+++..+|.++++++|+.++++++..|++.++||+|.+++.|+++..+.++.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~ 231 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776677
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|+.++|..+++......+|++++++..++...++..+.+|...|.++..++..|...++++++-
T Consensus 232 It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~ 295 (709)
T PRK08691 232 VAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALI 295 (709)
T ss_pred cCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998653
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=312.93 Aligned_cols=275 Identities=27% Similarity=0.427 Sum_probs=251.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------- 110 (345)
+++.|.++|||.+|++++||+++++.|.+++..++.+| +||+||+|||||++|+.+++.++|..
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 46789999999999999999999999999999998888 58999999999999999999998754
Q ss_pred ---CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
+...+++++++....+.+.++.........+ ..++++|+||||+|.++...++.|++.+++++.++.
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p----------~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP----------SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc----------ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 2345788888877777887877766644322 235789999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+.+.++++++++||..+.|.+++.+++..++..+++++|+.++++++..+++.++|++|.+++.|+++..+.++.
T Consensus 152 fIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~ 231 (559)
T PRK05563 152 FILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGK 231 (559)
T ss_pred EEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
||.++|.++++....+.++++++++..++...++..+..+...|.++..++..|.+++|.++.-
T Consensus 232 It~~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~ 295 (559)
T PRK05563 232 VTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLV 295 (559)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998643
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=304.03 Aligned_cols=275 Identities=29% Similarity=0.427 Sum_probs=247.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
.+++|+++|||.+|++++||+.++..|.+++..+..++ +||+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 57889999999999999999999999999999998877 699999999999999999999987531
Q ss_pred -----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
...+++++++....+.+.++.........+ ..++++++||||+|.++.+.++.|++++++++..+
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~----------~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP----------SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh----------hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 234677777665566777766554433222 12467899999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.+|++++...++.+++++||..+.|.+++.+++..|+..+++++|+.++++++..|++.++||+|.+++.+++++.+.++
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~ 232 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPK 232 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.|+.++|.++++...++++|++++++..++...++..+..|...|++|..++..|.++||.++.-
T Consensus 233 ~It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~v 297 (451)
T PRK06305 233 SLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLK 297 (451)
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998743
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=306.36 Aligned_cols=276 Identities=30% Similarity=0.431 Sum_probs=247.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++.||+++|||.+|++++||++++..|.+++..+..+|. ||+||+|+|||++|+.+++.++|....
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 567999999999999999999999999999999988885 899999999999999999999863211
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.++.........+ ..++++|+||||+|.++.+.++.|++++++++..+.
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P----------~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP----------IKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc----------ccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 12466676666667777766555443322 235778999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++...++.+++.+||..+.|.+++.+++..|+..+++.+|+.+++++++.+++.++||+|.+++.|++++.+.++.
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~ 231 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK 231 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999998887778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.++++......+|++++++..++...++.++..|...|+++..+++.|.+++++++.-+
T Consensus 232 It~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k 296 (486)
T PRK14953 232 VTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNK 296 (486)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=308.64 Aligned_cols=274 Identities=24% Similarity=0.342 Sum_probs=249.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|.+||||.+|++++||+++++.|.+++..++.+|. ||+||+|+|||++++.+++.++|...
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 578999999999999999999999999999999999984 99999999999999999999988321
Q ss_pred ---------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...+++++++.+..+++.+++.++...... ..++++|+||||+|+|+...+|.|++.||++
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P----------~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP----------TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch----------hcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 123678888887788888888877654332 2246789999999999999999999999999
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.++.||++|+...++.++|+|||..+.|.+++.+++.+++++++..+|+.++++++..|++.++|++|.+++.++.+..
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+.++.|+.++|.++++......++.+++.+..++...++..+..+...|.++..++..|...++++.+
T Consensus 232 ~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l 299 (700)
T PRK12323 232 YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIAL 299 (700)
T ss_pred hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999999999999999999999888754
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=312.15 Aligned_cols=275 Identities=26% Similarity=0.410 Sum_probs=251.0
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
..+++|++||||.+|++++||+.+++.|.+++..++.++ +||+||+|+|||++|+.+++.++|...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 567899999999999999999999999999999999887 899999999999999999999987532
Q ss_pred ----------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh
Q 019145 112 ----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (345)
Q Consensus 112 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~ 181 (345)
.+.+++++++....+++.+++.+......+ ..++++|+||||+|.++...++.|++++|+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P----------~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP----------VSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhch----------hcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 123567777776678888888776654332 235788999999999999999999999999
Q ss_pred cCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
++.++.||++++...++.+.+++||..+.|.+++.+++..|+.++++++|+.++++++..|++.++|++|.+++.++++.
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAI 238 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 262 RLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 262 ~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.+..+.||.++|.++++......+|++++++..++...++..+..++..|++|..+++.|.++++.++.
T Consensus 239 ~~g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~ 307 (598)
T PRK09111 239 AHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTR 307 (598)
T ss_pred hhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 776678999999999999999999999999999999999999999999999999999999999998864
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=311.41 Aligned_cols=274 Identities=24% Similarity=0.369 Sum_probs=248.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+++.++++|||.+|++++||+.++..|++++..++.+| +||+||+|||||++|+.+++.++|...
T Consensus 2 ~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 46678999999999999999999999999999999888 799999999999999999999988431
Q ss_pred ------------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHH
Q 019145 112 ------------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (345)
Q Consensus 112 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~l 179 (345)
.+.++.++++....+.+.+++....+...+ ..++++|+||||+|.++...++.|++++
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P----------~~~~~KVvIIdEad~Lt~~a~naLLK~L 151 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP----------QKGRYRVYIIDEVHMLSTAAFNAFLKTL 151 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh----------hcCCCEEEEEeChhhcCHHHHHHHHHHH
Confidence 234666777655566778877766654332 2357789999999999999999999999
Q ss_pred hhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 019145 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (345)
Q Consensus 180 e~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~ 259 (345)
++++..+.+|++++...++.+++.+||..++|.+++.+++..|+.++++.+|+.+++++++.|++.++||+|.+++++++
T Consensus 152 EePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 152 EEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 260 AARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 260 ~~~~~-----~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+..+. ++.||.++|.++++...++.+|++++++..++...++..+..|...|++|..|+..|.++||+++.
T Consensus 232 L~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~ 307 (620)
T PRK14954 232 VIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLV 307 (620)
T ss_pred HHHhccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99887 467999999999999999999999999999999999999999999999999999999999999864
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=305.63 Aligned_cols=270 Identities=28% Similarity=0.380 Sum_probs=243.3
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCC-----------------CC
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPE-----------------LY 112 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~-----------------~~ 112 (345)
+.+||||.+|++++||++++..|..++..+..+|. ||+||||||||++|+++++.+.|.+ ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 45999999999999999999999999999998886 9999999999999999999997643 22
Q ss_pred CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
..+++++++.+..+.+.+++........+ ..+++++|||||++.++...++.|++.+++++..+.+|+++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p----------~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAP----------LRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcc----------ccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 34678888876677777777654443321 22467899999999999999999999999998899999999
Q ss_pred CcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 019145 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272 (345)
Q Consensus 193 n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~ 272 (345)
+.+.++.+.+.+||..+.|.+++.+++..++.++++++|+.++++++..|++.++||+|.+++.|+++..+ ++.||.++
T Consensus 154 ~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~ 232 (504)
T PRK14963 154 TEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQ 232 (504)
T ss_pred CChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHH
Confidence 98899999999999999999999999999999999999999999999999999999999999999998765 66799999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 273 v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|.++++....+++|++++++..++...|+..+.+|+..|++|..|++.|.+++++++..
T Consensus 233 V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~ 291 (504)
T PRK14963 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYA 291 (504)
T ss_pred HHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999977653
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=319.77 Aligned_cols=271 Identities=25% Similarity=0.366 Sum_probs=246.4
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|.+||||.+|++++||+++++.|.+++..++.+| +||+||+|||||++++.|++.++|...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47899999999999999999999999999999988 699999999999999999999987532
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++....+++.++++........ ..++++|+||||+|+|+...++.|+++||+++.++.|
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p----------~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAP----------AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhch----------hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 235677888766677888887665543222 2246889999999999999999999999999999999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SS 267 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~-~~ 267 (345)
||+++..+++.+.|++||..+.|.+++.+++.+||.++++.+|+.++++++..|++.++||+|.++++|++++.+.+ +.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~ 233 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEG 233 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999987754 56
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++......++++++++..++...++..+.+|+..|+++..++..|.++|+++++
T Consensus 234 IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~ 296 (824)
T PRK07764 234 VTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIV 296 (824)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999864
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=311.69 Aligned_cols=274 Identities=24% Similarity=0.373 Sum_probs=251.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------- 110 (345)
....|++||||.+|++++||+++...|..++..++.++ +||+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred hhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 46689999999999999999999999999999999988 69999999999999999999998642
Q ss_pred ----CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 111 ----LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 111 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
..+.++.++++.+..+.+.++..+..+...+ ..++++|+||||+|.++...++.|++++|+++.++
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P----------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPP----------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCc----------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 2346788888876666777877776654332 23578999999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.+|++++...++.+++++||.++.|.+++.+++..|+.+++.++|+.+++++++.|++.++||+|.+++++++++.+.++
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~ 232 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGG 232 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.|+.++|.+.+.....+++|++++++..++...++..+.+|+..|++|..|+..|.++||+++.
T Consensus 233 ~It~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~ 296 (614)
T PRK14971 233 NITYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLV 296 (614)
T ss_pred CccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999976
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=307.13 Aligned_cols=274 Identities=24% Similarity=0.348 Sum_probs=248.1
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------- 110 (345)
++..+++||||.+|++++||++++..|..++..++.++ +||+||+|+|||++|+++++.+.|..
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 46678999999999999999999999999999999888 69999999999999999999998752
Q ss_pred ---CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
....+++++++....+.+.++.........+ ..++++++||||+|.++...++.|++.+++++..+.
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p----------~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP----------ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch----------hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 1234677777665566677776655443322 235778999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++...++.+++++||..++|.+++.+++.+++...++.+|+.++++++..|++.++||+|.+++.+++++.+.++.
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~ 231 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSD 231 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++......++++++++..++...++..+..+...|+++..++..+.++||+++.
T Consensus 232 It~e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~ 294 (563)
T PRK06647 232 ITLEQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLF 294 (563)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999874
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=299.49 Aligned_cols=273 Identities=26% Similarity=0.384 Sum_probs=245.4
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~--------------- 111 (345)
...++++|||.+|++++||+.++..|.+++..++.+| +||+||||+|||++|+++++.+.|...
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 4578999999999999999999999999999999888 799999999999999999999988431
Q ss_pred -----------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh
Q 019145 112 -----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (345)
Q Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le 180 (345)
.+.+++++++....+.+.+++....+...+ ..++++++||||+|.++...++.|+++++
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p----------~~~~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGP----------QKGRYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhch----------hcCCeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 123566677655566777777665554332 23577899999999999999999999999
Q ss_pred hcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 181 TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 181 ~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
++++.+.+|++++...++.+++.+||..++|.+++.+++..|+...++.+|+.+++++++.+++.++||+|.+++.++++
T Consensus 153 ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl 232 (397)
T PRK14955 153 EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQV 232 (397)
T ss_pred cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-----CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 261 ARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 261 ~~~~-----~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
..++ ++.||.++|.++++...++++|++++++..++...++.++..|...|++|..|+..|.++||+++.
T Consensus 233 ~~~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~ 307 (397)
T PRK14955 233 IAFSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLV 307 (397)
T ss_pred HHhccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 8875 347999999999999999999999999999999999999999999999999999999999999864
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=309.32 Aligned_cols=275 Identities=27% Similarity=0.433 Sum_probs=248.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
+++.+|+++|||.+|++++||+.+++.|..++..++.+|. ||+||+|+|||++|+++|+.+.|...
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 6788999999999999999999999999999999988885 89999999999999999999988542
Q ss_pred --CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 019145 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii 189 (345)
.+..++++++....+.+.++..+......+ ..++++|+||||+|.++...++.|++.+|+++..+.+|
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P----------~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLP----------TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhch----------hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 123456666655566777777776654432 23577899999999999999999999999999999999
Q ss_pred EecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCC
Q 019145 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (345)
Q Consensus 190 ~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it 269 (345)
++|+.+.++++++++||..+.|.+++.+++..++..++.++|+.++++++..+++.++|++|.+++.+++++.+.++.|+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It 232 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKIT 232 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766799
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.++|.++++....+.++.+++++..++...++..+..|...|++|..++..|...+|.+++
T Consensus 233 ~e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl 293 (725)
T PRK07133 233 LKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFII 293 (725)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998864
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=307.21 Aligned_cols=274 Identities=24% Similarity=0.345 Sum_probs=247.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||++++..|.+.+..++.+|. ||+||+|+|||++|+.+++.++|...
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 578999999999999999999999999999999999885 89999999999999999999988532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+.+.+++.+..+...+. .++++|+||||+|+|+...++.|++.+|+++.++.
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~----------~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA----------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh----------cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 1225677777665677888877766543321 24678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.++.+.++|||..++|.+++.+++..+|.+++..+++.++++++..|+..++|++|.+++.++.+..+.++.
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~ 231 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQ 231 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666677
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
|+.++|..+.+....+.++++++++..++...++..+..|...|.++..++..|...+++++.
T Consensus 232 it~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~ 294 (647)
T PRK07994 232 VTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAM 294 (647)
T ss_pred cCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998888889999999999999999999999999999999999999999998864
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=300.92 Aligned_cols=272 Identities=28% Similarity=0.434 Sum_probs=244.4
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC----------------
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~---------------- 111 (345)
++|++||||.+|++++||+++++.|..++..+..+|+ ||+||+|+|||++|+++++.+.|...
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4699999999999999999999999999999999885 89999999999999999999987543
Q ss_pred --CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 019145 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii 189 (345)
.+..++++++.+..+.+.+++.+...... +..++++|+||||+|.++.+.++.|++.+|+++.++.||
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~----------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYK----------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhC----------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 23467778777666788888877653322 123578899999999999999999999999999999999
Q ss_pred EecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCC
Q 019145 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (345)
Q Consensus 190 ~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it 269 (345)
++|+.+.++.+++++||..++|.+++.+++..++..+++.+|+.++++++..|++.++||+|.+++.|+++..++++.||
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It 231 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAIT 231 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999988877899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
.++|.++++......++.+++++..++...++..+..+ .|.++..++..|...++..++.+
T Consensus 232 ~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~ 292 (535)
T PRK08451 232 ESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSK 292 (535)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999 47888899988888888665433
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=301.61 Aligned_cols=273 Identities=23% Similarity=0.370 Sum_probs=244.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||++++..|..++..++.++ +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 57899999999999999999999999999999998888 689999999999999999999987422
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+.+.++..+..+...+ ..++++|+||||+|.++...++.|++++|+++..+.
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p----------~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMP----------SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhh----------hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 123566677656667777777776654332 224678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+...++.+++++||..++|.+++.+++..++..+++++|+.++++++..|++.++||+|.+++.+++++.+.++.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~ 231 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE 231 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
|+.++|.++++....+.++++++++..++...++..+..+...|.+...++..|.+.+.+++
T Consensus 232 It~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~ 293 (546)
T PRK14957 232 LKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACC 293 (546)
T ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999985555443
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=302.91 Aligned_cols=275 Identities=24% Similarity=0.350 Sum_probs=244.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+.++|++||||.+|++++||++++..|.+++..++..+ +||+||+|||||++|+.+++.++|...
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 56799999999999999999999999999999987555 789999999999999999999987521
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+++.++.+.+.+.... ..++++||||||+|.++...++.|++++|+++..+.
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p----------~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP----------MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhh----------hcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 234577787766667777776554443322 224678999999999999999999999999888999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+...++.+.+++||..++|.+++.+++..+|..+++.+++.++++++..|++.++||+|.+++.|++++...++.
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~ 231 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886544567
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
||.++|.++++....+.++++++++..++...++.++..|+..|+++..++..|...|++++.-
T Consensus 232 It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~ 295 (624)
T PRK14959 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFML 295 (624)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998753
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=300.70 Aligned_cols=273 Identities=31% Similarity=0.452 Sum_probs=254.9
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
.++++..||||++|++++||+++...|.+.+..++..| .+|+||.|||||++|+.+|+.++|.+.
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 45678999999999999999999999999999999988 599999999999999999999998642
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+++++++..+..... +..++++|+||||+|+|++..+++|++.+|++|.++.
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~----------P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~ 151 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYA----------PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVK 151 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccC----------CccccceEEEEecHHhhhHHHHHHHhcccccCccCeE
Confidence 23577888888888999999888875443 3346889999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.+++..++|||+.+.|..++.+++...|..++.++++.++++++..+++.++|.+|+++..|+.+..+.++.
T Consensus 152 FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~ 231 (515)
T COG2812 152 FILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGE 231 (515)
T ss_pred EEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
||.+.|.++++......+..+++++..+|...++..++++.+.|.++..++..+..+++.++
T Consensus 232 It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l 293 (515)
T COG2812 232 ITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLL 293 (515)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998843
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=292.02 Aligned_cols=274 Identities=28% Similarity=0.424 Sum_probs=245.1
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~--------------- 111 (345)
++||+++|+|.+|++++|+++.+..+..++..+..++ +||+||||+|||++++.+++.+.|...
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3699999999999999999999999999999998887 699999999999999999999976532
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++....+.+.++..+...... +..+++++|+|||++.++...++.|++.+++++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYA----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcC----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 13467777776555555666666554322 22356789999999999999999999999998889999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~i 268 (345)
|++++...++.+++.+||..+.|.+++.+++..|+..+++++|+.++++++..+++.++||+|.+.+.+++++.+.++.|
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~i 230 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNI 230 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999998887789
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 269 t~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|.++|+++++......++++++++..++...++..+..+...|++|..+++.|.+++++++.-
T Consensus 231 t~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~ 293 (355)
T TIGR02397 231 TYEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLI 293 (355)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998643
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=302.09 Aligned_cols=276 Identities=25% Similarity=0.366 Sum_probs=248.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++++|++||||.+|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|....
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 57789999999999999999999999999999999888 5899999999999999999999875321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.+++.+...... +..++++|+||||+|.++...++.|++.+|+++.++.
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYA----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhC----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 2256677766666777787776654322 2235788999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+.+.++.+.+++||..++|.+++.+++.+++.++++++|+.++++++..|++.++||+|.+++.++++..+.++.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~ 231 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGT 231 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999988899989999999999999999999999999999999999999999999999999999999999998887788
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
|+.++|.++++....+.+|++++++..++...++..+.+|...|+++..++..|...+++++.-+
T Consensus 232 I~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~ 296 (527)
T PRK14969 232 VNESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQ 296 (527)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998899999999999999999999999999999999999999999999887543
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=290.52 Aligned_cols=276 Identities=24% Similarity=0.391 Sum_probs=244.9
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------CCCceeee
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLEL 119 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------~~~~~~~~ 119 (345)
.+.+|++||||.+|++++||+.+++.+.+++..+..++ ++||||||+|||++++++++.+.+... .+..++++
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 46789999999999999999999999999999987764 799999999999999999999876321 24455666
Q ss_pred ecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccc
Q 019145 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (345)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~ 199 (345)
++....+.+.++..+...... +..+++++|+|||++.++...++.|++.+++++..+.+|++++...++.
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIP----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhc----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 665545556666666554322 1234678999999999999999999999999888888999998889999
Q ss_pred hhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC
Q 019145 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (345)
Q Consensus 200 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (345)
+++.+||..++|.+++.+++..++...+.++|+.+++++++.+++.++||+|.+++.+++++.+.++.||.++|.++++.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~ 232 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNI 232 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988777999999999999
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
...+.+|++++++..++...++..++.+...|++|..|+..|.++|++++.-+
T Consensus 233 ~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k 285 (367)
T PRK14970 233 LDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSK 285 (367)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999987533
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=279.18 Aligned_cols=261 Identities=28% Similarity=0.338 Sum_probs=227.2
Q ss_pred chhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.|++++.||+++++++||++++ ..|.+.+..+..++++|||||||||||+|+.++... +..|..+++.. .
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~-~ 84 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVT-S 84 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEecccc-c
Confidence 4899999999999999999999 789999999999999999999999999999999998 78899999877 6
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhh
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~ 203 (345)
+..+++..++........ +++.||||||+|.|++.+|+.|+..+|+ +.+.+|-+| |+.+.+.++|+
T Consensus 85 gvkdlr~i~e~a~~~~~~----------gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 GVKDLREIIEEARKNRLL----------GRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALL 152 (436)
T ss_pred cHHHHHHHHHHHHHHHhc----------CCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHh
Confidence 788888888887554321 3567999999999999999999999997 344444443 78889999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHH--HhCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CCCHHHHH
Q 019145 204 SRCAKFRFKPLSEEVMSSRVLHICN--EEGLN-----LDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLI 274 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~--~~~~~-----i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~--~it~~~v~ 274 (345)
|||.++.|+|++.+++...+++.+. ..|+. +++++.+.++..++||.|.++|.|+.++..+.. .++.+.++
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 9999999999999999999999544 34554 789999999999999999999999999977633 34577777
Q ss_pred Hhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 275 SVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 275 ~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
+.+ ++.+++.++.++++++++|.++|+.++.+|++.|+||..|.+.|.+.-..-
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsED 296 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASED 296 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 665 456788999999999999999999999999999999999999998876644
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=299.33 Aligned_cols=275 Identities=26% Similarity=0.389 Sum_probs=246.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+.+.|.+||||.+|++++||++++..|..++..++.++ +||+||+|+|||++++.+++.++|...
T Consensus 2 ~~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 2 TVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred ccHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 35568999999999999999999999999999988877 599999999999999999999976432
Q ss_pred -----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
.+.+++++++....+.+.+++.+...... +..++++||||||+|.++.+.++.|++++++++..+
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~----------p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFR----------PALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA 151 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC----------cccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence 12356677766556677777666543322 223567899999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.||++++..+++.+.+.+||..+.|.+++..++..++..++.++|+.++++++..|++.++||+|.+++.|++++.+.++
T Consensus 152 v~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~ 231 (585)
T PRK14950 152 IFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGG 231 (585)
T ss_pred EEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.||.++|.++++...+..+|++++++..++...++..+..|...|+++..+++.|.++|++++.-
T Consensus 232 ~It~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~l 296 (585)
T PRK14950 232 EISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLL 296 (585)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998643
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=292.26 Aligned_cols=275 Identities=25% Similarity=0.403 Sum_probs=245.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~-~lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
.+.||.++|+|.+|++++|+++++..|..++..++.. .+||+||+|+|||++|+++++.+.|...
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 4679999999999999999999999999999998764 5899999999999999999999987432
Q ss_pred ------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCc
Q 019145 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (345)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~ 185 (345)
...++++++.....+.+.+++.+......+ ..++++|+||||+|.|+...++.|++++|+++..
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p----------~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP----------VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh----------hcCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 123566777665567778888776654332 2246789999999999999999999999999999
Q ss_pred eEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 019145 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~ 265 (345)
+.||++++.+.++.+++++||..+.|.+++.+++..++.+++.++|+.++++++..+++.++|++|.+++++++++.+.
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~- 230 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP- 230 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-
Confidence 9999999988899999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 266 ~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
+.||.++|+++++...+..++++++++..++...++..+..|...|+++..++..|.++++.++.-+
T Consensus 231 ~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K 297 (620)
T PRK14948 231 GPITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAK 297 (620)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999999987543
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=270.77 Aligned_cols=268 Identities=44% Similarity=0.776 Sum_probs=234.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...+|.++|+|.+|++++|+++++..+..++..+..++++|+||||||||++++.+++++.+... ...++++++++..+
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~~ 81 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDERG 81 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEeccccccc
Confidence 45689999999999999999999999999999988888999999999999999999999866543 45677777766555
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...+...+..+....+. ....+++|+|||++.++.+.++.|+++++.++..+.+|+++|...++.+++.+||
T Consensus 82 ~~~~~~~i~~~~~~~~~--------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 82 IDVIRNKIKEFARTAPV--------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred hHHHHHHHHHHHhcCCC--------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 55554555444332211 1134679999999999999999999999998888999999998889999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~ 286 (345)
..++|.+++.+++..+++.++.++|+.+++++++.+++.++||+|.+++.++.++.+ ++.||.++|.++++...+.++|
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~~v~~~~~~~~~~~i~ 232 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPEEIR 232 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988865 5679999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Q 019145 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLL 324 (345)
Q Consensus 287 ~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~ 324 (345)
++++++..++...++..+.+|+. .|.++..|+..+...
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~ 271 (319)
T PRK00440 233 EMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHRE 271 (319)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999984 899999998888653
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=264.06 Aligned_cols=266 Identities=34% Similarity=0.569 Sum_probs=222.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG-- 126 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-- 126 (345)
.+|.+||+|.+|++++|++.++..+..++..+..++++|+||||||||++|+++++++.+... ...++.+++.+...
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQG 81 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcc
Confidence 479999999999999999999999999999988888999999999999999999999865431 23455666543210
Q ss_pred ------------------------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 127 ------------------------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 127 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...++..+...... .+..+.+++|||||++.++.+.++.|..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASY---------RPLSADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhc---------CCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 01111111111111 012245679999999999999999999999988
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+..+.+|++++.+..+.+.+.+||..+.|.|++.+++..++...+.++|+.+++++++.+++.++||+|.+++.+++++.
T Consensus 153 ~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~ 232 (337)
T PRK12402 153 SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL 232 (337)
T ss_pred cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888999988888888999999999999999999999999999999999999999999999999999999999998773
Q ss_pred HhCCCCCHHHHHHhhCC-CCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHH
Q 019145 263 LFGSSITSKDLISVSGV-IPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQVTLLL 325 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~ 325 (345)
.++.||.++|.++++. ..+.++|++++++..++...++..+.+|+ ++|.++..|+..|....
T Consensus 233 -~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~ 296 (337)
T PRK12402 233 -AAGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVA 296 (337)
T ss_pred -cCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3457999999999987 55889999999999999999999999997 79999999999886543
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=255.81 Aligned_cols=259 Identities=28% Similarity=0.354 Sum_probs=217.2
Q ss_pred hhhhhhCCCCCccccccHHHHHH---HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~---l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
||+++|||.+|++++|+++.+.. +..++..+..++++|+||||||||++|+.+++.. +..++.+++.. .+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~-~~ 73 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVT-SG 73 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccc-cc
Confidence 79999999999999999999766 9999999988899999999999999999999987 56788888765 34
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhhc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLAS 204 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~~ 204 (345)
...++..+........ .+...+|+|||+|.++...++.|+..+++ ..+.+|.++ |....+.+++.+
T Consensus 74 ~~~ir~ii~~~~~~~~----------~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 74 VKDLREVIEEARQRRS----------AGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHHHHHHHHHHHhhh----------cCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhc
Confidence 5555555555433211 12457999999999999999999999986 334445443 445678899999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC--
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEE--GL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV-- 279 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~--~~-~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~-- 279 (345)
||.++.|.+++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.++.. +..|+.+++.++++.
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQKRA 220 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHhhhh
Confidence 99999999999999999999987653 54 8999999999999999999999999998866 667999999988764
Q ss_pred --------CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 280 --------IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 280 --------~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
...+.+..+++++.+++.++++..+..|++.|+||..|++.|......-
T Consensus 221 ~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 221 ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred hccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2355677888889999999999999999999999999999998877543
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=240.66 Aligned_cols=268 Identities=22% Similarity=0.287 Sum_probs=224.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+.++.||++++|.+||++++ ..|+..+++++.++++||||||||||++|+.++...... ...|+++++.
T Consensus 123 ~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelSAt 199 (554)
T KOG2028|consen 123 LQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELSAT 199 (554)
T ss_pred hccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEecc
Confidence 4677999999999999999999988 578889999999999999999999999999999886332 3678888887
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccch
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIE 200 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~ 200 (345)
. .+..+++..++........ ..++.|+||||+|.+.+.+|+.|+..+|.. .+.+|-+| |+.+.+..
T Consensus 200 ~-a~t~dvR~ife~aq~~~~l---------~krkTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 200 N-AKTNDVRDIFEQAQNEKSL---------TKRKTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNA 267 (554)
T ss_pred c-cchHHHHHHHHHHHHHHhh---------hcceeEEEeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhH
Confidence 6 4667788888876655322 235679999999999999999999999873 33344433 77788999
Q ss_pred hhhccceeEEecCCCHHHHHHHHHHHHH------Hh--C-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---
Q 019145 201 PLASRCAKFRFKPLSEEVMSSRVLHICN------EE--G-----LNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264 (345)
Q Consensus 201 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~------~~--~-----~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~--- 264 (345)
++.+||.++.+.+++.+.+..+|.+... +. + +.+++.+++.++..|.||.|.++|.|+......
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTR 347 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988543 11 1 236788999999999999999999999774332
Q ss_pred -C----CCCCHHHHHHhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 265 -G----SSITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 265 -~----~~it~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
| ..++.+||++.+ +..+++.++.+.++++++|..+++.+|.+|++.|+||+.+.+.|.+.-..-
T Consensus 348 ~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASED 426 (554)
T KOG2028|consen 348 SGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASED 426 (554)
T ss_pred cCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcc
Confidence 2 248999998775 567789999999999999999999999999999999999999999887644
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=266.83 Aligned_cols=263 Identities=22% Similarity=0.319 Sum_probs=214.5
Q ss_pred CcchhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
...||+++|||.+|++++|+++.+ ..+.+.+..+..++++|+|||||||||+|+++++.. ...++.+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~ 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT------RAHFSSLNAVL 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh------cCcceeehhhh
Confidence 445999999999999999999988 478888999988999999999999999999999987 45666777654
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchh
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEP 201 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~ 201 (345)
.+...++..+........ ....+.+|||||+|.+++..++.|+..+++ ..+.+|.++ |....+.++
T Consensus 88 -~~i~dir~~i~~a~~~l~---------~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 88 -AGVKDLRAEVDRAKERLE---------RHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -hhhHHHHHHHHHHHHHhh---------hcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhH
Confidence 344444444444322111 112456999999999999999999999986 234444433 444578899
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----C--CC
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICN-------EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----S--SI 268 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~-------~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~--~i 268 (345)
+.+||.++.|+|++.+++..++++.+. .+++.+++++++.|++.++||+|.+++.|+.++.... . .|
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~I 235 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDI 235 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceec
Confidence 999999999999999999999999887 4568899999999999999999999999998775431 1 27
Q ss_pred CHHHHHHhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 269 TSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 269 t~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
|.+.+.+.+ +..+++.++.+++++.++|+++|+.++..|++.|+||..|++.|......
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asE 304 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASE 304 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777776654 45788999999999999999999999999999999999999999888774
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=251.75 Aligned_cols=259 Identities=29% Similarity=0.360 Sum_probs=210.8
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcC---C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA---N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~---~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|++||+|.++++++|+++.+..+..|+... . .++++|+||||||||++|+++++++ +..++++++++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~ 75 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQ 75 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEccccc
Confidence 47999999999999999999999999998642 2 4568999999999999999999998 678999999887
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----HHHHHHHHHHhhcCCceEEEEecCcccccch
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~ 200 (345)
.....+...+......... ...++++|||||+|.++. ..++.|+++++. ....+|+++|....+..
T Consensus 76 r~~~~i~~~i~~~~~~~sl--------~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 76 RTADVIERVAGEAATSGSL--------FGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSL 145 (482)
T ss_pred ccHHHHHHHHHHhhccCcc--------cCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccch
Confidence 7666666555543322110 012568999999999975 567888999885 34567888888877766
Q ss_pred -hhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC
Q 019145 201 -PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (345)
Q Consensus 201 -~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (345)
.++++|..+.|++++.+++..++..++..+|+.+++++++.|++.++||+|.+++.|+.++. ..+.|+.+++..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~-~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE-GYGKLTLEDVKTLGRR 224 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCcHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999998542 2356999999998877
Q ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 280 IPPEVVEGLFAVCRS-GDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 280 ~~~~~~~~l~~~~~~-~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
.....+|++++++.. ++...++..+.. ..++|..++..|...+..
T Consensus 225 d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~ 270 (482)
T PRK04195 225 DREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENIPK 270 (482)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhcccc
Confidence 778889999998886 777777665443 456777766666555543
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=229.61 Aligned_cols=258 Identities=29% Similarity=0.397 Sum_probs=207.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
....+|.+||||.+|++++|+++....+..++..+..+++ +|+||||+|||++++++++++ +.++.++++.+
T Consensus 6 ~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~- 78 (316)
T PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSD- 78 (316)
T ss_pred CCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCc-
Confidence 4567899999999999999999999999999999888886 559999999999999999987 45677788776
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
...+.++..+..+..... ..+.+++|+|||+|.+ ....++.|..+++.++..+.+|+++|....+.++++
T Consensus 79 ~~~~~i~~~l~~~~~~~~---------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 79 CRIDFVRNRLTRFASTVS---------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred ccHHHHHHHHHHHHHhhc---------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 234444444444332211 1135679999999999 667788888999998889999999999999999999
Q ss_pred ccceeEEecCCCHHHHHHHHH-------HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHh
Q 019145 204 SRCAKFRFKPLSEEVMSSRVL-------HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~-------~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~ 276 (345)
+||..+.|++|+.++...++. ..+..+|++++++++..+++.+.||.|.+++.++..+ .+..++.+++...
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~--~~~~i~~~~l~~~ 227 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYA--STGKIDAGILSEV 227 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH--ccCCCCHHHHHHh
Confidence 999999999999888775544 3455689999999999999999999999999999766 3467998888775
Q ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 277 SGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
. ...++.+++++...+...+.. .... -+.++..++..+...+...
T Consensus 228 ~----~~~~~~l~~~l~~~d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~ 272 (316)
T PHA02544 228 T----NSDIDDVVEALKAKDFKAVRA-LAPN--YANDYASFVGKLYDELYPQ 272 (316)
T ss_pred h----HHHHHHHHHHHHcCCHHHHHH-HHHH--hccCHHHHHHHHHHHHHHh
Confidence 5 567889999999998887776 3332 2778888888876555443
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=211.88 Aligned_cols=265 Identities=31% Similarity=0.521 Sum_probs=212.9
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC------------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------------------ 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~------------------ 111 (345)
.|.++|+|++++.+.++++....+......+..||+++|||+|+||.|.+.++.+++.+.+-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999999888888999999999999999999999999976321
Q ss_pred -----CCCceeeeecCCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC
Q 019145 112 -----YKSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~ 184 (345)
.+...++++++|....+ .+.+.++..++...-.. .....+++++|.|+|.++++.|.+|.+.+|.+..
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 13356677777654333 45666776655432111 1223789999999999999999999999999999
Q ss_pred ceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 019145 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~ 264 (345)
++++|++||+..++.+++++||-.+.++.|+++|+...+...++++|+.++.+.+..|++.|+||+|+++-+++.+....
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887442
Q ss_pred C------CCCCHHHHHHhhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 265 G------SSITSKDLISVSGVIPPEVVEGLFAVCRS----GDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 265 ~------~~it~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
. ..|...|- +..+.++.+.+.. ...-+.+..|.+|+.++++|.-|+..|.+.+..
T Consensus 237 ~~~~a~~~~i~~~dW--------e~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~ 301 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDW--------EIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL 301 (351)
T ss_pred ccccccCCCCCCccH--------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Confidence 1 11211111 1223333333322 233445778899999999999999988877654
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=218.72 Aligned_cols=284 Identities=35% Similarity=0.506 Sum_probs=249.1
Q ss_pred ccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 45 ~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
....+||.++|+|..+.+++++++++..+.+....++.+|+|+|||||+|||+.+.+.++.+.++......+.++++++.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 36778999999999999999999999999999999999999999999999999999999999887666667889999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
++.+.++..+..+........ ......++++|+||+|.++.+.|++|.+.++.+..+++|++++|.+.++.+++.+
T Consensus 105 rgid~vr~qi~~fast~~~~~----fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qs 180 (360)
T KOG0990|consen 105 RGIDPVRQQIHLFASTQQPTT----YSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQS 180 (360)
T ss_pred cCCcchHHHHHHHHhhcccee----ccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhc
Confidence 999999988888766532100 0112467899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhCCC
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGVI 280 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~~~ 280 (345)
||..+.|.|++..+....+..+++.+....+++....++..+.||+|.++|.|+..+...+ ..++.++|..-.+..
T Consensus 181 Rctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p 260 (360)
T KOG0990|consen 181 RCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAP 260 (360)
T ss_pred ccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999887763 236667788888888
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhhh
Q 019145 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
...++..+++.+..+....++.-+..+.. .|.+..+++..+...+..+..+.
T Consensus 261 ~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~ 313 (360)
T KOG0990|consen 261 QPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKT 313 (360)
T ss_pred ChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 88899999999999998777777777765 68888888888888887776555
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=207.20 Aligned_cols=197 Identities=24% Similarity=0.309 Sum_probs=143.8
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
....++.+++||.+|+|++||++++..+.-.++. ...+|++||||||+||||+|+.+|+++ +.++..++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~s 82 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITS 82 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEE
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEecc
Confidence 3456789999999999999999999887665542 346789999999999999999999998 67777788
Q ss_pred cCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------------
Q 019145 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------- 183 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------------- 183 (345)
++......++...+..+ .+..||||||+|.+++.+++.|+..+|+..
T Consensus 83 g~~i~k~~dl~~il~~l----------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNL----------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CCC--SCHHHHHHHHT------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred chhhhhHHHHHHHHHhc----------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 76544444444444332 134699999999999999999999999643
Q ss_pred -CceEEEEecCcccccchhhhcccee-EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
+...+|-+|+....+..++++||.+ .++..++.+++.+++.+.+...++.++++++..|+.+|.|.+|-|.+.|..+.
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1234555667778899999999996 47999999999999999999999999999999999999999999999998876
Q ss_pred HHh
Q 019145 262 RLF 264 (345)
Q Consensus 262 ~~~ 264 (345)
.++
T Consensus 227 D~a 229 (233)
T PF05496_consen 227 DFA 229 (233)
T ss_dssp CCC
T ss_pred HHH
Confidence 543
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=235.00 Aligned_cols=234 Identities=44% Similarity=0.686 Sum_probs=210.5
Q ss_pred EEEeC--CCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 85 MLFYG--PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 85 lll~G--~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
-+..| |.+.||||+|+++++++++. ..+.+++++|+++..+.+.++..++.+....... ..+++|+|||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~--------~~~~KVvIID 637 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIG--------GASFKIIFLD 637 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC--------CCCCEEEEEE
Confidence 36678 99999999999999998764 3457899999999889999999888776443211 1256899999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 019145 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (345)
Q Consensus 163 E~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 242 (345)
|+|.++.+.++.|++.+|+++.++.||++||.+.++.++++|||..+.|.+++.+++...+..+++++|+.++++++..|
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~I 717 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 019145 243 SSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQV 321 (345)
Q Consensus 243 ~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l 321 (345)
+..++||+|.++|.|+.++.. ...||.++|..+.+....+.++++++.+..++...++..+.+++ ..|.++..++..+
T Consensus 718 a~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l 796 (846)
T PRK04132 718 LYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQM 796 (846)
T ss_pred HHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999988754 45699999999999999999999999999999999999999987 7899999999999
Q ss_pred HHHHHHH
Q 019145 322 TLLLFVL 328 (345)
Q Consensus 322 ~~~~~~~ 328 (345)
...+...
T Consensus 797 ~~~l~~~ 803 (846)
T PRK04132 797 HREVFNL 803 (846)
T ss_pred HHHHHhc
Confidence 9888654
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=206.01 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=199.6
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceeeeec--CCccchHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNA--SDDRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~ 133 (345)
+|++++||+++++.+..++..++.+|+ +|+||+|+|||++|+.+++.+.|... ...++..+.. ....+.+.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 688999999999999999999998885 89999999999999999999987532 2334545543 233456667776
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecC
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~ 213 (345)
...+... +..++++|+|||++|.++...++.|++.+|++|+++.+|++|+.++++.++++|||..+.|.+
T Consensus 82 ~~~~~~~----------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~ 151 (313)
T PRK05564 82 IEEVNKK----------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNR 151 (313)
T ss_pred HHHHhcC----------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCC
Confidence 6554332 233578899999999999999999999999999999999999989999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 019145 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCR 293 (345)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~ 293 (345)
++.+++..|+...+. .++++.+..++..++|++..+........ .. ...+.++.+++++.
T Consensus 152 ~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~--------~~--------~~~~~~~~~~~~l~ 211 (313)
T PRK05564 152 LSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS--------LK--------NIRNMSLEILKDIK 211 (313)
T ss_pred cCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH--------HH--------HHHHHHHHHHHHHH
Confidence 999999999976542 46788899999999999888765542211 00 11346788999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 294 SGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 294 ~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.++...++..+..+...+.++..++..|.+.+++++.
T Consensus 212 ~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~ 248 (313)
T PRK05564 212 KSNINILLKYENFLIKYKENWEEILTCILSYIRDSLL 248 (313)
T ss_pred cCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998874
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=199.40 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=166.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
....|..+|||.+|++++|+++.+..+..++.. ...++++|+||||||||++|+++++++ +..+...++
T Consensus 11 ~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l------~~~~~~~~~ 84 (328)
T PRK00080 11 EEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM------GVNIRITSG 84 (328)
T ss_pred ccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh------CCCeEEEec
Confidence 334677899999999999999999888877753 334579999999999999999999998 344444444
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------ 183 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------ 183 (345)
+.......+...+... ....+|+|||+|.++....+.++..+++..
T Consensus 85 ~~~~~~~~l~~~l~~l----------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 85 PALEKPGDLAAILTNL----------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred ccccChHHHHHHHHhc----------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 3322222222222211 134699999999999888888888887542
Q ss_pred CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+...+|.+++....+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..|++.|+|++|.+.+.++.+..
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 235677788888889999999985 7899999999999999999999999999999999999999999999999988765
Q ss_pred Hh----CCCCCHHHHHHhhC
Q 019145 263 LF----GSSITSKDLISVSG 278 (345)
Q Consensus 263 ~~----~~~it~~~v~~~~~ 278 (345)
++ ...|+.+++.....
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHH
Confidence 54 35699988887764
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=192.60 Aligned_cols=195 Identities=24% Similarity=0.409 Sum_probs=157.9
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----C--------------
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----Y-------------- 112 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-----~-------------- 112 (345)
..++|..+.+++||+++...|...+..++.+| +||+||+|+|||++|+.+++.+.|... .
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 35799999999999999999999999999888 799999999999999999999987310 0
Q ss_pred -----CCceeeeecC---------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHH
Q 019145 113 -----KSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRT 178 (345)
Q Consensus 113 -----~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~ 178 (345)
..++..+..+ ...+++.++.....+...+ ..+.++|+||||+|.++...++.|++.
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~----------~~g~~rVviIDeAd~l~~~aanaLLk~ 164 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS----------GDGNWRIVIIDPADDMNRNAANAILKT 164 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc----------ccCCceEEEEEchhhcCHHHHHHHHHH
Confidence 0112223211 1123455554444333221 234678999999999999999999999
Q ss_pred HhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 179 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 179 le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+|+++.++.+|++++.+..+.+++++||..+.|.|++.+++..++...+...+ ++++++..+++.++|++|.+++.++
T Consensus 165 LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~ 242 (351)
T PRK09112 165 LEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLN 242 (351)
T ss_pred HhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988554333 7799999999999999999999885
Q ss_pred H
Q 019145 259 G 259 (345)
Q Consensus 259 ~ 259 (345)
.
T Consensus 243 ~ 243 (351)
T PRK09112 243 Y 243 (351)
T ss_pred c
Confidence 4
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=179.06 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=166.7
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
....||+.|++++||++++..+.-.++. ....|+||+||||.||||+|+.+|+++ +.++-..+++....
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gvn~k~tsGp~leK 90 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL------GVNLKITSGPALEK 90 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh------cCCeEecccccccC
Confidence 3568999999999999999888777654 345679999999999999999999999 55666555554444
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceEE
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRF 188 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~i 188 (345)
..++...+..+ .+.+|+||||+|.+++..-+.|+..||++. +..-+
T Consensus 91 ~gDlaaiLt~L----------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 PGDLAAILTNL----------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hhhHHHHHhcC----------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 44444444432 255799999999999999999999999653 23335
Q ss_pred EEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---
Q 019145 189 FFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~--- 264 (345)
|-+|+....+..++++||. +.++..++.+|+..++.+.+..-++.+++++...|+++|.|.+|-+.+.|..+..++
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHh
Confidence 5566777889999999998 678999999999999999999999999999999999999999999999998887665
Q ss_pred -CCCCCHHHHHHhhC
Q 019145 265 -GSSITSKDLISVSG 278 (345)
Q Consensus 265 -~~~it~~~v~~~~~ 278 (345)
...|+.+.+.+++.
T Consensus 235 ~~~~I~~~ia~~aL~ 249 (332)
T COG2255 235 GDGDIDRDIADKALK 249 (332)
T ss_pred cCCcccHHHHHHHHH
Confidence 35577776666553
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=204.36 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=181.3
Q ss_pred hHHHhhhccccccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC---C
Q 019145 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP---E 110 (345)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~---~ 110 (345)
+.+.-++++.. .-..||.++|||.+|++++|++..++.++..+......+++|+||||||||++|+++++..... .
T Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~ 117 (531)
T TIGR02902 39 ELEKLNKMRAI-RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP 117 (531)
T ss_pred HHHHHHHhhhh-hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC
Confidence 33334444421 3367999999999999999999999999988877777889999999999999999998765321 1
Q ss_pred C-CCCceeeeecCCcc-chHHHH-HHHHHH----HH-h---hhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHH
Q 019145 111 L-YKSRVLELNASDDR-GINVVR-TKIKTF----AA-V---AVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRR 177 (345)
Q Consensus 111 ~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~----~~-~---~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~ 177 (345)
+ .+..+++++|.... ....+. ..+... .. . .... ..+.+....+..++|+|||++.++...++.|++
T Consensus 118 ~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~ 197 (531)
T TIGR02902 118 FKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLK 197 (531)
T ss_pred cCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHH
Confidence 1 24678888875311 110010 111100 00 0 0000 011222334567899999999999999999999
Q ss_pred HHhhc----------------------------CCceEEEEe-cCcccccchhhhccceeEEecCCCHHHHHHHHHHHHH
Q 019145 178 TMETY----------------------------SKVTRFFFI-CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228 (345)
Q Consensus 178 ~le~~----------------------------~~~~~ii~~-~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 228 (345)
.+++. +.++++|++ ++.+..+++++++||..+.|++++.+++..+++..++
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 99752 123455554 4677889999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhCCCC
Q 019145 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGVIP 281 (345)
Q Consensus 229 ~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~~~~ 281 (345)
+.++.+++++++.|..++. |.|.+.|.++.++..+. ..|+.+|+..++....
T Consensus 278 k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 278 KIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 9999999999999988776 89999999998876552 3599999999987543
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=189.28 Aligned_cols=200 Identities=20% Similarity=0.245 Sum_probs=156.7
Q ss_pred CCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
++|++++|+++.+..+..++.. +..++++|+||||||||++++++++++ +..+...+++.......+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~------~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM------GVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeccchhcCchhHHH
Confidence 4788999999999999988863 445679999999999999999999998 33444444332222222322
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceEEEEecCc
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFFICNY 194 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~ii~~~n~ 194 (345)
.+... ....+++|||++.++.+.++.|+.++++.. +...+|.+++.
T Consensus 75 ~l~~~----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 75 ILTNL----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHHhc----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 22221 123599999999999998888988886433 22556777788
Q ss_pred ccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh----CCCCC
Q 019145 195 ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSIT 269 (345)
Q Consensus 195 ~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~----~~~it 269 (345)
...+.+++.+||. .+.|.+++.+++.+++.+.+...++.+++++++.|++.++|++|.+.+.+..++.++ ...|+
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it 218 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN 218 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcC
Confidence 8889999999996 679999999999999999999999999999999999999999999999998876553 34589
Q ss_pred HHHHHHhhCC
Q 019145 270 SKDLISVSGV 279 (345)
Q Consensus 270 ~~~v~~~~~~ 279 (345)
.+.+.+.+..
T Consensus 219 ~~~v~~~l~~ 228 (305)
T TIGR00635 219 RDIALKALEM 228 (305)
T ss_pred HHHHHHHHHH
Confidence 8888877643
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=186.59 Aligned_cols=184 Identities=26% Similarity=0.390 Sum_probs=150.0
Q ss_pred CCccccccHHHHHHHHHHHHcCC---------CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETAN---------CPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|++++||+++++.|++++..+. .++ +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999999999999875 555 799999999999999999999988631
Q ss_pred CCCceeeeecC-CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 019145 112 YKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
...++..+.+. ...+++.++..+......+ ..++++|+||||+|.++...++.|++.+|+++.++.+|+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p----------~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRP----------STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCc----------ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 11223333222 2345666776665554332 224678999999999999999999999999999999999
Q ss_pred ecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 019145 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l 257 (345)
+|+.+..+.++++|||..+.|++|+.+++..++.. ..+ ++++.+..++..++|+++.++..+
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999999863 224 678889999999999999887765
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=195.77 Aligned_cols=215 Identities=30% Similarity=0.431 Sum_probs=175.4
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc--------------------------------CCCC--cEEEeCCCCCCH
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET--------------------------------ANCP--HMLFYGPPGTGK 95 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~--------------------------------~~~~--~lll~G~~G~GK 95 (345)
.|+++|+|+.|.|++|.+..-+.+..|++. ++++ .+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 799999999999999999998888888853 1111 279999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHH
Q 019145 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175 (345)
Q Consensus 96 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l 175 (345)
||+|+.+|++. ++.++++|++|.++...+.+.+..........+ ...++.+|||||||.-++...+.+
T Consensus 340 TTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~------adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 340 TTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD------ADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred hHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc------cCCCcceEEEecccCCcHHHHHHH
Confidence 99999999998 999999999999999999988888665432210 124567999999999998888888
Q ss_pred HHHHhh------cC---------------CceEEEEecCcccc-cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 019145 176 RRTMET------YS---------------KVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 176 ~~~le~------~~---------------~~~~ii~~~n~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (345)
+.++.. ++ -...||++||.... -...|+..+.++.|.+++..-+.+.|+.+|..+|+.
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 888861 11 12458888987543 245566678899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHh
Q 019145 234 LDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---ITSKDLISV 276 (345)
Q Consensus 234 i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~---it~~~v~~~ 276 (345)
.+..++..|++.+.+|+|.++|.||.++...... +...++.+.
T Consensus 488 ~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 488 ADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAK 533 (877)
T ss_pred CCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhh
Confidence 9999999999999999999999999999765432 555555433
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-23 Score=179.80 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=172.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------CCCceeeeecCC--
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------YKSRVLELNASD-- 123 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------~~~~~~~~~~~~-- 123 (345)
.|++++||++++..+...+..++.++ +||+||+|+||+++|.++++.+.|... ...++..+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999999998766 799999999999999999999987641 122223332210
Q ss_pred ---------------------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 124 ---------------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 124 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...++.+++....+... +..+.++|+|||++|.++...++.|++.+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~----------p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP----------PLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccC----------cccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 11233444443333222 23357899999999999999999999999998
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+ ++.+|++++.+.++.++++|||..+.|.+++.+++.+++......++.. .....++..++|+++.+++.++....
T Consensus 152 p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~ 227 (314)
T PRK07399 152 G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS 227 (314)
T ss_pred C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8 7889999999999999999999999999999999999998765433222 23578899999999999998875432
Q ss_pred HhCCCCCHHHHHHhhC-CCCHHHHHHHHHHHH-cCCHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 019145 263 LFGSSITSKDLISVSG-VIPPEVVEGLFAVCR-SGDFDL---ANKEVNNIIAEGYPASLLLSQVTLLLF 326 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~-~~~~~~~~~l~~~~~-~~~~~~---a~~~l~~l~~~g~~~~~i~~~l~~~~~ 326 (345)
+..+.+..... ......+..+.+.+. ..+... .+.++..+..+......++..+...-+
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~~~~~~~~~~l~~a~~ 291 (314)
T PRK07399 228 -----IPPELLQKLEQPPKSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQKTKNRQLLKQLEKLRK 291 (314)
T ss_pred -----HHHHHHHHHHhcccCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 12222222221 112334445555555 445444 344444444433333444444444433
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=186.06 Aligned_cols=191 Identities=24% Similarity=0.396 Sum_probs=154.8
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCC-------------------
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYK------------------- 113 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~------------------- 113 (345)
..+|.++.+++||+++++.|.+.+..++.+| +||+||+|+||+++|..+++.++|.....
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 3799999999999999999999999999998 79999999999999999999998754211
Q ss_pred ---------CceeeeecC---------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHH
Q 019145 114 ---------SRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175 (345)
Q Consensus 114 ---------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l 175 (345)
.++..+... ....++.++.....+... ...+.++|+||||+|.++...++.|
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----------~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----------AAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----------cccCCCEEEEEechHhcCHHHHHHH
Confidence 122333221 112345555554443322 1234678999999999999999999
Q ss_pred HHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 019145 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 176 ~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
++.+++++..+.+|++|+.+..+.+.+++||..+.|.+++.+++..++... +...+++.+..++..++|+++.++.
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALR 237 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999653 3445566668899999999999998
Q ss_pred HHH
Q 019145 256 YLQ 258 (345)
Q Consensus 256 ~l~ 258 (345)
.++
T Consensus 238 ll~ 240 (365)
T PRK07471 238 LAG 240 (365)
T ss_pred Hhc
Confidence 875
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=179.79 Aligned_cols=183 Identities=27% Similarity=0.393 Sum_probs=145.8
Q ss_pred CCccccc-cHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceee
Q 019145 59 QVKDVAH-QEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLE 118 (345)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~ 118 (345)
.|+.++| |+.+++.|...+..++.+|. ||+||+|+||+++|+.+++.+.|.... ..++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4667888 89999999999999999995 999999999999999999999876421 112322
Q ss_pred eec-CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccc
Q 019145 119 LNA-SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (345)
Q Consensus 119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~ 197 (345)
+.. ....+.+.+++....+...+ ..+.++|+||||++.++...++.|++.+|+++.++.+|++++.+.+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~----------~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSG----------VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCC----------cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 222 12244566776666554332 2346789999999999999999999999999999999999999999
Q ss_pred cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 198 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+.++++|||..++|.+++.+++..++. ++| ++++....++..+ |+++.++..++
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~ 206 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSE 206 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhc
Confidence 999999999999999999999988884 345 5566666666664 68988887664
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=168.52 Aligned_cols=166 Identities=29% Similarity=0.443 Sum_probs=133.3
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC--------------------CCCCceeeeecCCccchHH
Q 019145 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------------LYKSRVLELNASDDRGINV 129 (345)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------------~~~~~~~~~~~~~~~~~~~ 129 (345)
+.|.+.+..+..++ +||+||+|+|||++++.+++.+.+.. ..++.++..+.. ..+.+.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~ 80 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQ 80 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHH
Confidence 45677888888876 79999999999999999999997751 111222222222 244566
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeE
Q 019145 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209 (345)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i 209 (345)
++..+..+...+ ..+.++++||||+|.++.+.++.|++++++++..+.+|++++...++.+++++||..+
T Consensus 81 i~~i~~~~~~~~----------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~ 150 (188)
T TIGR00678 81 VRELVEFLSRTP----------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVL 150 (188)
T ss_pred HHHHHHHHccCc----------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEe
Confidence 666555543322 2356789999999999999999999999999999999999988889999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHH
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~ 253 (345)
.|.|++.+++..|+... | ++++++..+++.++||+|.+
T Consensus 151 ~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred eCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999999999765 4 78999999999999999864
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=177.87 Aligned_cols=185 Identities=39% Similarity=0.594 Sum_probs=151.9
Q ss_pred cccccHHHHHHHHHHHH-cCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeec
Q 019145 62 DVAHQEEVVRVLTNTLE-TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA 121 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~ 121 (345)
++++++.....+..+.. .+..++ +||+||||+|||++|.++++.+.|... ...+++++++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57788888888888887 566888 999999999999999999999987543 3468999999
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchh
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~ 201 (345)
++....+...+.+..+.......+ ..+++++++|||+|.++.+.++.+++.+|+++.++.+|++||.+.++.++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 987775444455555444432211 13567899999999999999999999999999999999999999999999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
+++||..+.|.|++......+.. ++++..+++.+.||+|.+++.++..+..
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999955544444442 7788999999999999999999998865
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=168.87 Aligned_cols=199 Identities=15% Similarity=0.155 Sum_probs=146.1
Q ss_pred CCcccc-c-cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVA-H-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~-g-~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
+|++++ | +..++..+..+......++++|+||+||||||+++++++++... .....++.++.... ...+..+.
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~----~~~~~~~~ 94 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW----FVPEVLEG 94 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh----hhHHHHHH
Confidence 677776 3 67788888888877776789999999999999999999987432 12222333322110 11111111
Q ss_pred HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcC--CceEEEEecCcc-cc---cchhhhccc--
Q 019145 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS--KVTRFFFICNYI-SR---IIEPLASRC-- 206 (345)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~--~~~~ii~~~n~~-~~---l~~~l~~r~-- 206 (345)
+ ...++|+|||++.+. +..+..|+.++.... ++..+|++++.+ .. +.+.+++|+
T Consensus 95 ~----------------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~ 158 (235)
T PRK08084 95 M----------------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDW 158 (235)
T ss_pred h----------------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhC
Confidence 1 123599999999985 344555666665432 334677777644 33 579999999
Q ss_pred -eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hCCCCCHHHHHHhhC
Q 019145 207 -AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDLISVSG 278 (345)
Q Consensus 207 -~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~---~~~~it~~~v~~~~~ 278 (345)
.++.+.+|+.+++..++++.+...|+.+++++++.|+++++||+|.+++.++.+... .++.||.+.++++++
T Consensus 159 g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 599999999999999999989889999999999999999999999999999887533 257799999988764
|
|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=171.92 Aligned_cols=232 Identities=11% Similarity=0.064 Sum_probs=193.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
+..+|||+.-.-.......+.+.+......++++..+++.+.. ...+.+ .... +..+++++|+|+
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~~----~~t~----------slF~~~rlV~v~ 71 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELLD----ALSP----------SLFGEDRVIVLT 71 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHHH----hhCc----------CccCCceEEEEe
Confidence 3469999987666667676777765666667889999877632 232222 1111 344677899999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCceEEEEecCc---ccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 019145 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY---ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239 (345)
Q Consensus 163 E~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~---~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 239 (345)
+.+...+...+.+..++.++++.+.+|+++.. ..++.+.+...+.++.|.+++..++..|+..+++..|+.++++++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~ 151 (318)
T PRK05629 72 NMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVV 151 (318)
T ss_pred ChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 98877666778889999988888777777642 233556788888899999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHH
Q 019145 240 STLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319 (345)
Q Consensus 240 ~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~ 319 (345)
+.+++.+++|+..+.+++++++.+.+++||.++|++++....+.++|+++|++..++...|+.++..|+..|++|..|++
T Consensus 152 ~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~ 231 (318)
T PRK05629 152 HALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAA 231 (318)
T ss_pred HHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 99999999999999999999987777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 019145 320 QVTLLLFVLM 329 (345)
Q Consensus 320 ~l~~~~~~~~ 329 (345)
.|.++++++.
T Consensus 232 ~l~~~~r~l~ 241 (318)
T PRK05629 232 ALSMKVGQIA 241 (318)
T ss_pred HHHHHHHHHH
Confidence 9998876653
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=168.56 Aligned_cols=178 Identities=23% Similarity=0.328 Sum_probs=148.5
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeecC---C
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS---D 123 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~~---~ 123 (345)
+....+.+.+.+..++.+| +||+||+|+||+++|.++|+.+.|... ...++..+.+. .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 5677888999999999888 589999999999999999999988532 22344445433 2
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
..+++.+++..+.+...+ ..+.++|+|||++|.++....|.|++.+|++++++.||++|+.+..+.++++
T Consensus 87 ~I~idqiR~l~~~~~~~~----------~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHA----------RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cCCHHHHHHHHHHHhhcc----------ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 356778888777665543 2357899999999999999999999999999999999999999999999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
|||..+.|++++.+++..|+... ..++++.+..++..++|++..++..++
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999532 236677788889999999999988764
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=166.08 Aligned_cols=203 Identities=13% Similarity=0.178 Sum_probs=141.4
Q ss_pred hCCCCCccccccHHH--HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 55 YRPKQVKDVAHQEEV--VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~--~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
..+.+|+++++++.. ...+.........+.++|+|||||||||+++++++++... .....++..+...... ..
T Consensus 10 ~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~~~----~~ 84 (229)
T PRK06893 10 IDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQYFS----PA 84 (229)
T ss_pred CCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhhhh----HH
Confidence 456699999965433 2333333333344558999999999999999999997432 2233333332111111 11
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC--ceEEEEecCc-ccc---cchhhhc
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK--VTRFFFICNY-ISR---IIEPLAS 204 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~--~~~ii~~~n~-~~~---l~~~l~~ 204 (345)
.+..+ .+.++|+|||++.+. ......|+.+++.... ...+|++++. +.. ..+.+.+
T Consensus 85 ~~~~~----------------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s 148 (229)
T PRK06893 85 VLENL----------------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS 148 (229)
T ss_pred HHhhc----------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH
Confidence 11111 234699999999874 3344567777765433 3344566654 332 3488999
Q ss_pred cce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH--h-CCCCCHHHHHHhhC
Q 019145 205 RCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--F-GSSITSKDLISVSG 278 (345)
Q Consensus 205 r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~--~-~~~it~~~v~~~~~ 278 (345)
|+. .+.+++|+.++...++++.+...++.++++++++|+++++||+|.+.+.++.+... . ++.||.+.|+++++
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 986 89999999999999999999999999999999999999999999999999877532 2 56799999988764
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=170.61 Aligned_cols=235 Identities=15% Similarity=0.152 Sum_probs=190.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
+.++|||+....+...++.+.+.+..+....+++..+++.+... +...+...... +..+++++|+|+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~---~~~~~~~~~t~----------pff~~~rlVvv~ 68 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQ---AIQALNEAMTP----------PFGSGGRLVWLK 68 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchH---HHHHHHHhcCC----------CCCCCceEEEEe
Confidence 45799999999999999999888766555567777777665322 22333332211 234577899999
Q ss_pred CCCCC---CHHHHHHHHHHHhhcCCceEEEEec-Ccc---cccchhhhccceeEEecCC---CHHHHHHHHHHHHHHhCC
Q 019145 163 EADSM---TEDAQNALRRTMETYSKVTRFFFIC-NYI---SRIIEPLASRCAKFRFKPL---SEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 163 E~~~l---~~~~~~~l~~~le~~~~~~~ii~~~-n~~---~~l~~~l~~r~~~i~~~~~---~~~~~~~~l~~~~~~~~~ 232 (345)
+++.+ +++..+.|..+++++++.+.+|+++ +.. .+..+.+.+.+.+..|.++ +.+++..|++.++++.|+
T Consensus 69 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~ 148 (326)
T PRK07452 69 NSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGV 148 (326)
T ss_pred CchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCC
Confidence 98655 5677889999999988888888764 322 3455667777778887665 467799999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 019145 233 NLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIA 309 (345)
Q Consensus 233 ~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~ 309 (345)
.+++++++.|++.+++|++.+.+++++++.++ +++||.++|.++++.. ..++|++++++..++...|+..++.|..
T Consensus 149 ~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~ 227 (326)
T PRK07452 149 KLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLD 227 (326)
T ss_pred CCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 3469999999999876 5789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q 019145 310 EGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 310 ~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.|++|..|++.|.++++.++.-
T Consensus 228 ~g~~p~~il~~l~~~~r~l~~~ 249 (326)
T PRK07452 228 ANEPALRIVATLTGQFRTWLWV 249 (326)
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988643
|
|
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=169.26 Aligned_cols=234 Identities=11% Similarity=0.066 Sum_probs=196.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilii 161 (345)
+..+|+|+.-.........+.+.+.. +++.++++..+++.+... . . +...... +..+++++|+|
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~---~-i~~~~t~----------plF~~rRlV~v 70 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-Y---E-LAELLSP----------SLFAEERVVVL 70 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-H---H-HHHhcCC----------CCCCCceEEEE
Confidence 34699999999999888998887754 356678888888866422 2 2 2222211 34567899999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc---ccccchhhhccc-eeEEecCC-CHHHHHHHHHHHHHHhCCCCCH
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY---ISRIIEPLASRC-AKFRFKPL-SEEVMSSRVLHICNEEGLNLDA 236 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~---~~~l~~~l~~r~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~i~~ 236 (345)
++...+.++..+.|..+++++++.+.+|++++. ..++.+.+.+.. .++.|.++ +..++..|+..+++..|+.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~ 150 (320)
T PRK07914 71 EAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDD 150 (320)
T ss_pred eChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 998777777778899999998887777776532 223456777665 48899998 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Q 019145 237 EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASL 316 (345)
Q Consensus 237 ~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~ 316 (345)
++++.|++.++||+..+.+++++++.+.++.||.++|.++++...+.++|+++|++..++...|+..+..|...|++|..
T Consensus 151 ~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 151 DTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHH
Confidence 99999999999999999999999987667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 019145 317 LLSQVTLLLFVLMVQ 331 (345)
Q Consensus 317 i~~~l~~~~~~~~~~ 331 (345)
|++.|.++|+++..-
T Consensus 231 il~~l~~~~r~L~~~ 245 (320)
T PRK07914 231 LADALAEAVHTIARV 245 (320)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998643
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-21 Score=167.99 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=137.9
Q ss_pred HHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceeeeecC---CccchHHHH
Q 019145 74 TNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS---DDRGINVVR 131 (345)
Q Consensus 74 ~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~~~~~---~~~~~~~~~ 131 (345)
.+++..++.+| +||+||+|+|||++|+.+|+.+.|.... +.++..+... ...+++.++
T Consensus 13 ~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 13 QQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred HHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 33455577777 7899999999999999999999885321 2244555432 335678888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEe
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~ 211 (345)
+....+...+. .+.++|+|||++|.++...++.|++.+|++++++.||++|+.+..+.++++|||..+.|
T Consensus 93 ~l~~~~~~~~~----------~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 93 ELVSFVVQTAQ----------LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred HHHHHHhhccc----------cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 87766554432 24678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
.+++.+++..++.... ...+++.+..++..++|++..++..++
T Consensus 163 ~~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 163 PLPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred CCcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 9999999999996543 134567777888999999999887654
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=179.83 Aligned_cols=211 Identities=24% Similarity=0.367 Sum_probs=143.9
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCC-----CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~-----~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
....||+++|+|.+.+|++.+++.+..++.|+.... ...++|+||+||||||+++.+++++ +..+.++.
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~ 77 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWI 77 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEec
Confidence 467799999999999999999999999999998632 1237999999999999999999998 45555543
Q ss_pred cCCc-----------c----chHHHHHHHHHHHHhhhcCCCC-----CCCCCCCCeEEEEEcCCCCCCH----HHHHHHH
Q 019145 121 ASDD-----------R----GINVVRTKIKTFAAVAVGSGQR-----RGGYPCPPYKIIILDEADSMTE----DAQNALR 176 (345)
Q Consensus 121 ~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~iliiDE~~~l~~----~~~~~l~ 176 (345)
.+.. . ...........+..+....... .+.....+.+||+|+|+..... ...+.|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 2211 0 0001112222333221111111 1112235678999999998643 2344555
Q ss_pred HHHhhcCC-ceEEEEec-------Ccc--------cccchhhhcc--ceeEEecCCCHHHHHHHHHHHHHHh-----CC-
Q 019145 177 RTMETYSK-VTRFFFIC-------NYI--------SRIIEPLASR--CAKFRFKPLSEEVMSSRVLHICNEE-----GL- 232 (345)
Q Consensus 177 ~~le~~~~-~~~ii~~~-------n~~--------~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~- 232 (345)
+++..... .++||++- +.. ..+.+.+... +..|.|+|.+..-+++.|.+++..+ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 66654433 44455541 111 1355666664 4589999999999999999999987 32
Q ss_pred CC--CHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 233 NL--DAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 233 ~i--~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
.. ..++++.|++.++||+|.|++.||+++.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 22 2456999999999999999999999996
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=161.86 Aligned_cols=178 Identities=21% Similarity=0.289 Sum_probs=145.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeec--CCc
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA--SDD 124 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~--~~~ 124 (345)
+....+.+.+.+..++.+| +||+||+|+||+++|..+++.+.|... .+.++..+.+ ...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 5677788999999999888 589999999999999999999988542 1224444543 234
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
.+++.+++..+.+...+ ..++++|+|||++|.++...+|+|++.+|++++++.+|++|+.+..+.++++|
T Consensus 87 I~id~iR~l~~~~~~~~----------~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 87 IGVDQVREINEKVSQHA----------QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCHHHHHHHHHHHhhcc----------ccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 56778887766655443 23567899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
||..+.|.+++.+++.++|.... ..++..+..++..++|.+..++..++
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 99999999999999999997643 23454567778899999988877664
|
|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-20 Score=160.47 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=182.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
...+.+.++.+. +..+++|..- ....+.+.+.+..++. ..+++.+ .+.+. .+......
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-----~~fdg~~-~~~~~---ii~~aetl--------- 64 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-----SEFDGQG-LLQQE---LLSWTEHF--------- 64 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-----ceecCCC-CCHHH---HHHHHhcC---------
Confidence 345556677777 7789999887 6566667666543322 2244443 23333 33333322
Q ss_pred CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEE-EecC--cccccchhhhccceeE----EecCCCHHHHHHH
Q 019145 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF-FICN--YISRIIEPLASRCAKF----RFKPLSEEVMSSR 222 (345)
Q Consensus 150 ~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii-~~~n--~~~~l~~~l~~r~~~i----~~~~~~~~~~~~~ 222 (345)
+..+.+++|++.+.+.++....+.|..+++++++.+.+| ++.+ ...++.+.+.. +..+ .|.++...++..|
T Consensus 65 -PfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~W 142 (311)
T PRK05907 65 -GLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQL 142 (311)
T ss_pred -CcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh-cceeccccccCCCCHHHHHHH
Confidence 345678899998887777667889999999988865555 4442 11223344443 4444 8999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhC--CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHH
Q 019145 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (345)
Q Consensus 223 l~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~~--~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (345)
+..++++.|+.+++++++.+++.+ +||+..+.+++++++.+.+ +.||.++|++++..+.+.++|+++|++..++...
T Consensus 143 i~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~ 222 (311)
T PRK05907 143 LIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVE 222 (311)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHH
Confidence 999999999999999999999999 6999999999999999864 5699999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 019145 300 ANKEVNNIIAE-GYPASLLLSQVTLLL 325 (345)
Q Consensus 300 a~~~l~~l~~~-g~~~~~i~~~l~~~~ 325 (345)
|++++..|..+ |++|..|++.|.+||
T Consensus 223 Al~il~~Ll~~~ge~p~~ILall~rQf 249 (311)
T PRK05907 223 GHSLLRSLLSDMGEDPLGIIAFLRSQC 249 (311)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999999 999999999999999
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=160.35 Aligned_cols=200 Identities=18% Similarity=0.226 Sum_probs=142.7
Q ss_pred CCccccc-cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHH
Q 019145 59 QVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (345)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (345)
+|+++++ .......+...........++|+||+||||||+++++++++... +..+..++..+. ...+...+..+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~~--~~~~~~~~~~l 91 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQAA--AGRLRDALEAL 91 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHHh--hhhHHHHHHHH
Confidence 7887775 44455555544433333458999999999999999999987432 223333332211 11111222221
Q ss_pred HHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCccc----ccchhhhcc---ce
Q 019145 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASR---CA 207 (345)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~l~~r---~~ 207 (345)
....+|+|||++.+. ...+..++.+++.... ...+|++++.+. .+.+.+.+| +.
T Consensus 92 ----------------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~ 155 (233)
T PRK08727 92 ----------------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI 155 (233)
T ss_pred ----------------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc
Confidence 134599999999985 3455677777765432 345788876443 246899999 66
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHhhCC
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVSGV 279 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~---~~~~~it~~~v~~~~~~ 279 (345)
.+.|++|+.+++..++++++...++.+++++++.|++.++||+|.+++.++.+.. ..++.||.+.+++++..
T Consensus 156 ~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 156 RIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998887753 33667999988887654
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=177.31 Aligned_cols=274 Identities=18% Similarity=0.143 Sum_probs=176.6
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHH----HcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcC----CCCCCCceeeee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL----ETANCPH-MLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELN 120 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l----~~~~~~~-lll~G~~G~GKT~la~~la~~l~~----~~~~~~~~~~~~ 120 (345)
.+...|.| +.+.|++..+..|...+ ......+ ++|+|+||||||++++.+.+++.. .....+.+++++
T Consensus 747 vL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 747 MMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred HcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 34445555 46778877776665554 4344444 479999999999999999988742 122236788999
Q ss_pred cCCccchHHHHHHHH-HHHHhhhcCCCC--------CC--CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---CCce
Q 019145 121 ASDDRGINVVRTKIK-TFAAVAVGSGQR--------RG--GYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVT 186 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~--~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---~~~~ 186 (345)
|........+...+. .+....+..+.. .. ........||||||+|.|....++.|+.+++.. ...+
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKL 903 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKL 903 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeE
Confidence 966444433322222 111110000000 00 001123459999999999876777777777643 2345
Q ss_pred EEEEecCc---ccccchhhhccce--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---hcCCCHHHHHHHHH
Q 019145 187 RFFFICNY---ISRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---ISQGDLRRAITYLQ 258 (345)
Q Consensus 187 ~ii~~~n~---~~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~s~g~~r~~~~~l~ 258 (345)
.+|.++|. +..+.+.+.+|+. .+.|+|++.+++.++|..++......+++++++.+++ ..+||+|.|++.|.
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 66777765 4456788888886 5899999999999999999986544589999999998 67899999999999
Q ss_pred HHHHHh-CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHH--HHHHHc-CCCHHHHHHHHHHHHHHHHh
Q 019145 259 GAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV--NNIIAE-GYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 259 ~~~~~~-~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l--~~l~~~-g~~~~~i~~~l~~~~~~~~~ 330 (345)
.++... +..|+.++|.++...... ..+.+++..-....-+-++ -.+... |..+ .-+..+...++.++.
T Consensus 984 rAgEikegskVT~eHVrkAleeiE~---srI~e~IktLPlHqKLVLlALIlLlk~tg~~~-i~TGEVYerYk~Lce 1055 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLFD---SPLTNAINYLPWPFKMFLTCLIVELRMLNDFI-IPYKKVLNRYKVLVE 1055 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHHh---hhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCc-eeHHHHHHHHHHHHH
Confidence 888665 346999999988764433 3355556555555433322 222233 3323 334555555555543
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=166.89 Aligned_cols=210 Identities=21% Similarity=0.304 Sum_probs=144.6
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHH-----cCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----TANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
....+|.++|+|.+.+++..+++.+.+++.|+. ....++ +||+||+||||||+++.+++++ +..+.+
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel------g~~~~E 140 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL------GYQLIE 140 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh------Cceeee
Confidence 567799999999999999999999999999998 444443 7999999999999999999998 555555
Q ss_pred eecCCc-------------cc--hHHHHHHHHHHHHhhhc--CCCCCCCCCCCCeEEEEEcCCCCCCHH-H----HHHHH
Q 019145 119 LNASDD-------------RG--INVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTED-A----QNALR 176 (345)
Q Consensus 119 ~~~~~~-------------~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iliiDE~~~l~~~-~----~~~l~ 176 (345)
...+.. .. ...-...++.|...... .-...+.......++|+|||+...... . ++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 542110 00 11112233334443322 112233344456679999999876432 2 33334
Q ss_pred HHHhhcCCceEEEEec-------Ccccccchhhhc--cceeEEecCCCHHHHHHHHHHHHHHhCCCCC------HHHHHH
Q 019145 177 RTMETYSKVTRFFFIC-------NYISRIIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLNLD------AEALST 241 (345)
Q Consensus 177 ~~le~~~~~~~ii~~~-------n~~~~l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~------~~~~~~ 241 (345)
.+...+...+++|+|- |......+.+.. |...+.|+|....-+++.|..+|..++...+ ...++.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL 300 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH
Confidence 3333322233333331 112223344433 4558999999999999999999999887776 677999
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 019145 242 LSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 242 l~~~s~g~~r~~~~~l~~~~ 261 (345)
++..++||+|.|++.||..+
T Consensus 301 i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 301 ICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHhcCccHHHHHhHhhhhc
Confidence 99999999999999999886
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=181.67 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=136.4
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-----EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee-
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-----MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL- 119 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-----lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~- 119 (345)
....||++||+|..+++++|+++.+..+..|+.....+. ++|+||||+|||++++.+++.+. ..+.++
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~------~~~~Ew~ 142 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG------IQVQEWS 142 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh------hHHHHHh
Confidence 455799999999999999999999999999998654322 89999999999999999999872 222111
Q ss_pred ec---C---C---------------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH---HHHHH
Q 019145 120 NA---S---D---------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---AQNAL 175 (345)
Q Consensus 120 ~~---~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~---~~~~l 175 (345)
++ . . ......+...+.... ......+.....+..||+|||++.+... .+..+
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~----~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~l 218 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRAT----NKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEI 218 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHH----hhhcccccccCCceeEEEeecchhhchhhHHHHHHH
Confidence 00 0 0 001111222222211 0000001111246679999999776432 23333
Q ss_pred HH--HHhhcCCceEEEEecCcc-c--------c------cchhhhc--cceeEEecCCCHHHHHHHHHHHHHHhCCC---
Q 019145 176 RR--TMETYSKVTRFFFICNYI-S--------R------IIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLN--- 233 (345)
Q Consensus 176 ~~--~le~~~~~~~ii~~~n~~-~--------~------l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--- 233 (345)
+. +.+. ..+.+|++++.. . . +.+++++ ++.+|.|+|++..++.+.|.++++.++..
T Consensus 219 Lr~~~~e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 219 LRWKYVSI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHHhhcC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 33 3332 344455554321 1 1 2368877 55689999999999999999999876432
Q ss_pred ---C-CHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 234 ---L-DAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 234 ---i-~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+ +++++..|+..++||+|.|++.|+.++.
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 2 5689999999999999999999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-20 Score=159.50 Aligned_cols=178 Identities=23% Similarity=0.333 Sum_probs=142.7
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC---------------CCceeeee--cCC---
Q 019145 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY---------------KSRVLELN--ASD--- 123 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~---------------~~~~~~~~--~~~--- 123 (345)
-+...++.+...+..++.+| +||+||+|+||+++|.++++.+.|.... ..++..+. +.+
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 36778889999999999998 7999999999999999999999885421 12344342 211
Q ss_pred ----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccc
Q 019145 124 ----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (345)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~ 199 (345)
...++.+++..+.+...+ ..++++|+|||++|.++....|+|++.+|++++++.||++++.+..+.
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p----------~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTP----------QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred cccccccHHHHHHHHHHHhhCc----------ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 123556665555443332 234678999999999999999999999999999999999999999999
Q ss_pred hhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 200 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
++++|||..+.|.+++.+++..||.. .+ ++++.+..++..++|++..++..++
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999953 34 4566677789999999998887663
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=163.52 Aligned_cols=235 Identities=16% Similarity=0.141 Sum_probs=187.2
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEE
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ili 160 (345)
..+.++|||+........+..+.+.+......++++..+++.+... .....+...... +..+++++|+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~--~~~~~~~~~~t~----------slF~~~rlVi 86 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDA--DPARLEDEANAI----------SLFGGRRLIW 86 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhc--CHHHHHHHHhCC----------CCCCCceEEE
Confidence 4455799999999999999999988755444456667666543210 122333333222 3345778999
Q ss_pred EcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc---cccchhhh--ccceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 019145 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI---SRIIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235 (345)
Q Consensus 161 iDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~---~~l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~ 235 (345)
|.+.+ +...+.|..+++.+++.+.+|+.+... .++.+.+. ..+..+.|.+++..++..|+..+++..|+.++
T Consensus 87 v~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~ 163 (343)
T PRK06585 87 VRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRIT 163 (343)
T ss_pred EECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCC
Confidence 99653 345567888888877777777765432 22334332 23447889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 019145 236 AEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYP 313 (345)
Q Consensus 236 ~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~--~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~ 313 (345)
+++++.+++.++||++.+.+++++++.+++ +.||.++|.++++...+.++|++++++..++...|+..+..|+.+|++
T Consensus 164 ~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~g~~ 243 (343)
T PRK06585 164 PDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAEGTA 243 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999974 469999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019145 314 ASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 314 ~~~i~~~l~~~~~~~~~ 330 (345)
|..|++.|.+++++++.
T Consensus 244 p~~il~~L~~~~r~L~~ 260 (343)
T PRK06585 244 PVLILRAALRHFQRLHI 260 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999853
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=162.29 Aligned_cols=201 Identities=21% Similarity=0.277 Sum_probs=146.9
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.-+++++-|-++.++.+++.+.- ..+..+|||||||||||.+|+++|++. +..|+.+.++.
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSE 220 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSE 220 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHH
Confidence 34788999999999999998854 234459999999999999999999998 78899888764
Q ss_pred c------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh-----
Q 019145 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET----- 181 (345)
Q Consensus 124 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~----- 181 (345)
. .+...+++.+.-.... .+.||||||+|.+. .++|-.+++++.+
T Consensus 221 lVqKYiGEGaRlVRelF~lArek--------------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREK--------------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhc--------------CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 2 3334455555443332 34699999999873 3567778877764
Q ss_pred cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH-
Q 019145 182 YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL- 257 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l- 257 (345)
+..++.+|++||.++-++|+|++ |++ .|+|+.|+.+...++++-..++..+. ++-.++.|++.+.|--..-+..+
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHH
Confidence 34689999999999999999998 555 89999999999999998888765542 22337778877755333333333
Q ss_pred HHHHHHh----CCCCCHHHHHHhhC
Q 019145 258 QGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~ 278 (345)
..+..++ ...||.+|..+++.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHH
Confidence 3333333 34588888776654
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=154.09 Aligned_cols=205 Identities=24% Similarity=0.258 Sum_probs=145.1
Q ss_pred hhhCCCCCccccccHHHHH---HHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 53 EKYRPKQVKDVAHQEEVVR---VLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~---~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
+-....+|+|++||+.++. -+.+.++. -.+.|+|||||||||||++|+++++++ +.+++.+.+..
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~ 186 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATE 186 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHH
Confidence 4556668999999988874 34445544 246689999999999999999999998 77788777765
Q ss_pred ccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC------------HHHHHHHHHHHhhcC--
Q 019145 124 DRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETYS-- 183 (345)
Q Consensus 124 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~------------~~~~~~l~~~le~~~-- 183 (345)
..+. ..+.+........ .+.|++|||+|.+. .+..|+|+.-++...
T Consensus 187 liGehVGdgar~Ihely~rA~~~--------------aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en 252 (368)
T COG1223 187 LIGEHVGDGARRIHELYERARKA--------------APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN 252 (368)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhc--------------CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC
Confidence 3332 2233333333222 34699999999873 235677777776443
Q ss_pred CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAA 261 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l~~~~ 261 (345)
..++.|.+||.+..+++++++|+. .++|..|+.++...++...+++.-++++.. ++.+++.++| +-|.+..-.-+.+
T Consensus 253 eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 253 EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 457788899999999999999998 899999999999999999999877777665 7888877755 3333333332222
Q ss_pred HH-----hCCCCCHHHHHHhhC
Q 019145 262 RL-----FGSSITSKDLISVSG 278 (345)
Q Consensus 262 ~~-----~~~~it~~~v~~~~~ 278 (345)
.. ..+.|+.+|++.++.
T Consensus 332 Lh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 332 LHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHHhchhhhhHHHHHHHHH
Confidence 11 123466666665544
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=156.69 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=149.7
Q ss_pred hCCCCCcccc--ccHHHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 55 YRPKQVKDVA--HQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 55 ~~p~~~~~~~--g~~~~~~~l~~~l~~-~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
-+|.+|++++ ++......+..+... ....+++|+||+||||||+++++++++... +..++.+++.....
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~~~~~~~----- 83 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLDAASPLL----- 83 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEehHHhHH-----
Confidence 3456888887 346777888887763 334569999999999999999999987332 34555555543211
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC--ceEEEEecCccc---ccchhhhccc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK--VTRFFFICNYIS---RIIEPLASRC 206 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~~---~l~~~l~~r~ 206 (345)
.+. .....++|+|||++.++...+..|+.+++.... ...++++++... .+.+.+.+|+
T Consensus 84 -~~~----------------~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 84 -AFD----------------FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred -HHh----------------hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 010 011346999999999998888889888875432 223555554332 2457777786
Q ss_pred ---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHhhCC
Q 019145 207 ---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGV 279 (345)
Q Consensus 207 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~ 279 (345)
..+.++|++.++...++...+...++.+++++++.|++.+.||+|.+.+.++.+..++ +..||.+.++++++.
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 5899999999999999999998999999999999999999999999999998876544 677999999998764
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=160.76 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=135.3
Q ss_pred CccccccHHHHHHHHHHHHc---------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceeeeecCC
Q 019145 60 VKDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASD 123 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~ 123 (345)
+++++|.+.+++.+.+.... +...+++|+||||||||++|+.+++.+..... ....++++++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 56788988888666543211 23456899999999999999999998743221 233566665544
Q ss_pred ccchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHhhcCCceEEEEecC
Q 019145 124 DRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 124 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
..+... ....+...... +..+||||||+|.+. .+.++.|++.+++......+|+++.
T Consensus 85 l~~~~~g~~~~~~~~~~~~-------------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKK-------------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred hhhhhccchHHHHHHHHHh-------------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 221100 01111111111 123599999999875 4567889999998777777777764
Q ss_pred cc-----cccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----------cCCCHHHHHHHH
Q 019145 194 YI-----SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----------SQGDLRRAITYL 257 (345)
Q Consensus 194 ~~-----~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----------s~g~~r~~~~~l 257 (345)
.. ..+.+++.+|+. .+.|++++.+++.+++++++...+..++++++..+.+. +.||.|.+.|.+
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 246789999995 79999999999999999999998999999999888543 369999999999
Q ss_pred HHHHHH
Q 019145 258 QGAARL 263 (345)
Q Consensus 258 ~~~~~~ 263 (345)
+.+...
T Consensus 232 e~a~~~ 237 (261)
T TIGR02881 232 EKAIRR 237 (261)
T ss_pred HHHHHH
Confidence 887643
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-19 Score=161.00 Aligned_cols=273 Identities=18% Similarity=0.201 Sum_probs=176.8
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeec
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNA 121 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~ 121 (345)
..+...|.|. +++|++..++.|..++.. +..++++|+||||||||++++.+++++.... .....++.++|
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3456778886 578998888877777653 4556799999999999999999999873211 11256788888
Q ss_pred CCccchH-HHHHHHHHHHHhhhcCCCCCCC--------------CCCCCeEEEEEcCCCCCCHH---HHHHHHHH--Hhh
Q 019145 122 SDDRGIN-VVRTKIKTFAAVAVGSGQRRGG--------------YPCPPYKIIILDEADSMTED---AQNALRRT--MET 181 (345)
Q Consensus 122 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~iliiDE~~~l~~~---~~~~l~~~--le~ 181 (345)
....+.. .+......+... +...+..+ ....+..+|+|||+|.+... ....|+++ ...
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGS--GEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhc--CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 6644432 233333332110 00000000 01234568999999999532 23344444 122
Q ss_pred cC-CceEEEEecCccc---ccchhhhccce--eEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHH---hcCCCH
Q 019145 182 YS-KVTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSS---ISQGDL 250 (345)
Q Consensus 182 ~~-~~~~ii~~~n~~~---~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~---~s~g~~ 250 (345)
.+ .++.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++..+++.+++. ....+++++++.+++ .++||+
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 22 4577888887764 46777888874 7999999999999999999863 223478888777654 557999
Q ss_pred HHHHHHHHHHHHHh----CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHH--HHHHHHHHHcCCCHHHHHHHHHHH
Q 019145 251 RRAITYLQGAARLF----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLA--NKEVNNIIAEGYPASLLLSQVTLL 324 (345)
Q Consensus 251 r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a--~~~l~~l~~~g~~~~~i~~~l~~~ 324 (345)
|.+++.+..++..+ ...||.++|.++..... .....+.+.+-+.... +..+..+...+.. ......+...
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~---~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~-~~~~~~~~~~ 316 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE---KDRLLELIRGLPTHSKLVLLAIANLAANDED-PFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC-CccHHHHHHH
Confidence 99999999887655 24599999998876542 2334556666555554 5555555554433 3455666666
Q ss_pred HHHHHh
Q 019145 325 LFVLMV 330 (345)
Q Consensus 325 ~~~~~~ 330 (345)
+..+..
T Consensus 317 y~~~~~ 322 (365)
T TIGR02928 317 YKEVCE 322 (365)
T ss_pred HHHHHH
Confidence 666543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-20 Score=159.45 Aligned_cols=175 Identities=16% Similarity=0.283 Sum_probs=141.7
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------CCCceeeeecC---Cc
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----------------YKSRVLELNAS---DD 124 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-----------------~~~~~~~~~~~---~~ 124 (345)
+....+.+.+.+..++.+| +||+||.|+||+++|..+++.+.|... ...++..+.+. ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 5677888899999999888 699999999999999999999988542 12345555442 23
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
.+++.+++........+ ..+.++|+|||++|.++....|+|++.+|++++++.+|++|+.+..+.++++|
T Consensus 88 I~vdqiR~l~~~~~~~~----------~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 88 ITVEQIRQCNRLAQESS----------QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CCHHHHHHHHHHHhhCc----------ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 56677776554443322 23467899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
||..+.|++++.+++.+|+.. .|+. ....++..++|++..++..++
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 999999999999999999953 4543 235667889999999887763
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=150.26 Aligned_cols=141 Identities=38% Similarity=0.615 Sum_probs=110.3
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-----------------CCceeeeecCCc--
Q 019145 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNASDD-- 124 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~-----------------~~~~~~~~~~~~-- 124 (345)
||+.+++.|.+.+..++.++ +||+||+|+||+++|..+++.+.|.... ..++..++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999998 6999999999999999999999886543 456666666543
Q ss_pred -cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
...+.+++....+...+ ..+.++|+||||+|.++.+.+++|++.+|+++.++.+|++|+....+.++++
T Consensus 81 ~i~i~~ir~i~~~~~~~~----------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSP----------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-----------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHH----------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 56677776655543332 2256899999999999999999999999999999999999999999999999
Q ss_pred ccceeEEecCCC
Q 019145 204 SRCAKFRFKPLS 215 (345)
Q Consensus 204 ~r~~~i~~~~~~ 215 (345)
|||..+.|.+++
T Consensus 151 SRc~~i~~~~ls 162 (162)
T PF13177_consen 151 SRCQVIRFRPLS 162 (162)
T ss_dssp TTSEEEEE----
T ss_pred hhceEEecCCCC
Confidence 999999998874
|
... |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=172.88 Aligned_cols=232 Identities=21% Similarity=0.265 Sum_probs=166.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~~~ 124 (345)
.+..+.+||.+|++++|+...+..+...+......+++|+||||||||++|+.+++....... .+..++.+++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 467888999999999999999998888887777778999999999999999999877632111 2456788887542
Q ss_pred cc-hHHHHH-HH--------HHHHH--hhhc-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--------
Q 019145 125 RG-INVVRT-KI--------KTFAA--VAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------- 183 (345)
Q Consensus 125 ~~-~~~~~~-~~--------~~~~~--~~~~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------- 183 (345)
.. ...+.. .+ ..... ...+ .....+.......++||+||++.++...++.|++++++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeeccee
Confidence 10 111100 00 00000 0000 0011111222345699999999999999999999997531
Q ss_pred ------------------Cc--eEEEEe-cCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 019145 184 ------------------KV--TRFFFI-CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (345)
Q Consensus 184 ------------------~~--~~ii~~-~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 242 (345)
.. +.+|.+ ++.+..+.+++++||..+.|.|++.+++..++++.+.+.++.+++++++.|
T Consensus 302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L 381 (615)
T TIGR02903 302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELI 381 (615)
T ss_pred ccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11 233332 345667889999999999999999999999999999988888999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHh--------C----CCCCHHHHHHhhCCCC
Q 019145 243 SSISQGDLRRAITYLQGAARLF--------G----SSITSKDLISVSGVIP 281 (345)
Q Consensus 243 ~~~s~g~~r~~~~~l~~~~~~~--------~----~~it~~~v~~~~~~~~ 281 (345)
.+++. +.|++++.|+.+..+. + ..|+.++|.++++...
T Consensus 382 ~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 382 ARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 99876 6799999997665432 1 1488999999988654
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=156.79 Aligned_cols=201 Identities=16% Similarity=0.195 Sum_probs=147.8
Q ss_pred CCCCCcccc--ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 56 RPKQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 56 ~p~~~~~~~--g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+.+|++++ ++...+..+..++......+++|+||+|||||++++.+++.+... +..++.+++...... ....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~~ 84 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQA--DPEV 84 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHh--HHHH
Confidence 455777777 367788999999877777789999999999999999999987422 234555555432111 0111
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH--HHHHHHHHhhcC-CceEEEEecCccc-c--c-chhhhccc
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYS-KVTRFFFICNYIS-R--I-IEPLASRC 206 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~--~~~l~~~le~~~-~~~~ii~~~n~~~-~--l-~~~l~~r~ 206 (345)
+... ...++|+|||++.++... ++.|..+++... ....+|++++... . . .+.+.+|+
T Consensus 85 ~~~~----------------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 LEGL----------------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred Hhhc----------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1110 123599999999997633 777887776532 2346777776432 2 2 26777776
Q ss_pred e---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHhh
Q 019145 207 A---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVS 277 (345)
Q Consensus 207 ~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~---~~~~~it~~~v~~~~ 277 (345)
. .+.+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+.. ..++.||.+.+.+++
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 3 7999999999999999999888899999999999999999999999999876654 336779999888764
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-19 Score=157.11 Aligned_cols=237 Identities=18% Similarity=0.172 Sum_probs=185.9
Q ss_pred HHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 72 VLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 72 ~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
.+...++.+..++ .+|+|..-.-....+..+.+.+..++. ..+ +..+. .+ +.+.+......
T Consensus 5 ~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~~~-~~~~~---~~---~~~i~~~~~t~---------- 66 (328)
T PRK08487 5 ELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-LKT-LYFDE---YD---FEQAKDFLSQS---------- 66 (328)
T ss_pred HHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-hhh-hchhh---cc---HHHHHHHHhcc----------
Confidence 5566677776655 599999999999999999887643322 111 22221 22 23333333322
Q ss_pred CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc---ccchhhhcc--ceeEEecCCCHHHHHHHHHH
Q 019145 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASR--CAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~---~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~ 225 (345)
+..+++++|+|.+...+.....+.|..+++++++.+.+|++.+... ++.+.+... +..+.|.+++..++..|+..
T Consensus 67 plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~ 146 (328)
T PRK08487 67 SLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQE 146 (328)
T ss_pred cccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHH
Confidence 3446778999998877776677889999998777666665443332 222333322 45789999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 019145 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVN 305 (345)
Q Consensus 226 ~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~ 305 (345)
++++.|+.+++++++.+++.+++|+..+.+++++++.+.+ .||.++|.+++....+.++|++++++..++ .+...+.
T Consensus 147 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~ 223 (328)
T PRK08487 147 RAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-PITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLE 223 (328)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-CCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHH
Confidence 9999999999999999999999999999999999999865 799999999999999999999999999999 5788999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 306 NIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 306 ~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
.|..+|++|..|++.|.++|+++.
T Consensus 224 ~L~~~g~~pi~Il~~L~r~~~~L~ 247 (328)
T PRK08487 224 KLLEEGFNEIALLNSLERFFYQLF 247 (328)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=149.16 Aligned_cols=190 Identities=13% Similarity=0.153 Sum_probs=131.8
Q ss_pred hhhhhhCCCCCcccc-c--cHHHHHHHHHHHHcCC--C--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 50 PWVEKYRPKQVKDVA-H--QEEVVRVLTNTLETAN--C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~-g--~~~~~~~l~~~l~~~~--~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++..+| +|++++ | +..+...+..|..... + +.++||||||+||||+++++++.. +..++ ...
T Consensus 8 ~~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~------~~~~~--~~~ 76 (214)
T PRK06620 8 TTSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS------NAYII--KDI 76 (214)
T ss_pred CCCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc------CCEEc--chh
Confidence 344444 556555 4 4566777777775321 2 458999999999999999988775 22111 110
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc---ccc
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RII 199 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~---~l~ 199 (345)
. .. .... ...++++|||+|.+.....-.+++.+.+. + ..++++++.+. .+
T Consensus 77 ~-~~--------~~~~---------------~~~d~lliDdi~~~~~~~lf~l~N~~~e~-g-~~ilits~~~p~~l~l- 129 (214)
T PRK06620 77 F-FN--------EEIL---------------EKYNAFIIEDIENWQEPALLHIFNIINEK-Q-KYLLLTSSDKSRNFTL- 129 (214)
T ss_pred h-hc--------hhHH---------------hcCCEEEEeccccchHHHHHHHHHHHHhc-C-CEEEEEcCCCccccch-
Confidence 0 00 0000 12359999999977533333333333332 2 24556654222 24
Q ss_pred hhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hCCCCCHHHH
Q 019145 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDL 273 (345)
Q Consensus 200 ~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~---~~~~it~~~v 273 (345)
+.+++|+. ++.+++|+.+++..++++.+...++.+++++++.|+++++||+|.+++.++.+... .++.||.+.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~ 209 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLV 209 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999998 89999999999999999999989999999999999999999999999999887543 2556999988
Q ss_pred HHhh
Q 019145 274 ISVS 277 (345)
Q Consensus 274 ~~~~ 277 (345)
++++
T Consensus 210 ~~~l 213 (214)
T PRK06620 210 KEVL 213 (214)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-19 Score=154.91 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------------CCceeeeecC---
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------------KSRVLELNAS--- 122 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~-------------------~~~~~~~~~~--- 122 (345)
+...++.+... .++.+| +||+||+|+||+++|..+++.++|.... ..++..+...
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 34455555553 346666 6899999999999999999999885421 1233333221
Q ss_pred --------------------------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHH
Q 019145 123 --------------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (345)
Q Consensus 123 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~ 176 (345)
...+++.+++........ +..++++|+|||++|.++....|.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~----------~~~~~~kV~iI~~ae~m~~~AaNaLL 153 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVG----------THRGGARVVVLYPAEALNVAAANALL 153 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccC----------CccCCceEEEEechhhcCHHHHHHHH
Confidence 123445666555443322 22356789999999999999999999
Q ss_pred HHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 177 ~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
+.+|++++++.||++|+.+..+.++++|||..+.|.+++.+++.+++... ++ ++. ..++..++|++..++..
T Consensus 154 KtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 154 KTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPLAALAL 225 (342)
T ss_pred HHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999542 43 232 33567789999988876
Q ss_pred H
Q 019145 257 L 257 (345)
Q Consensus 257 l 257 (345)
+
T Consensus 226 ~ 226 (342)
T PRK06964 226 A 226 (342)
T ss_pred H
Confidence 5
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=150.11 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=141.0
Q ss_pred CCCcccc-cc-HHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVA-HQ-EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~-g~-~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+|++++ |. ..++..+..+.... ..++++|+||+|+||||+++++++++... +..++.++..+... ....
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~~--~~~~ 90 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELLD--RGPE 90 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHHh--hhHH
Confidence 3788777 43 33444555554331 12458999999999999999999987322 23444444432111 0111
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCccc----ccchhhhcc
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASR 205 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~l~~r 205 (345)
.++.+ .+.++|+|||++.+. ...+..|+.+++.... ...+|++++... ...+.+.+|
T Consensus 91 ~~~~~----------------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SR 154 (234)
T PRK05642 91 LLDNL----------------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSR 154 (234)
T ss_pred HHHhh----------------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHH
Confidence 11111 123599999999875 3446678888876543 456777775422 236899999
Q ss_pred c---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHhhC
Q 019145 206 C---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (345)
Q Consensus 206 ~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~ 278 (345)
+ .++.+.+|+.++...+++..+...++.+++++++.|++.++||+|.+.+.++.+...+ +++||.+.++++++
T Consensus 155 l~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 155 LTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHhc
Confidence 8 5899999999999999998888889999999999999999999999999998775432 57799999988764
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=154.17 Aligned_cols=218 Identities=16% Similarity=0.154 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHH
Q 019145 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRR 177 (345)
Q Consensus 99 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~ 177 (345)
+..+.+.+..+.+.+.+++.+++.+. ..+.+.+.+.. . +..+++++++|++++.+. +...+.|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l~~~~~~---~----------slf~~~kliii~~~~~~~~~~~~~~L~~ 69 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEEF-DWNQLLEEAQT---L----------PLFSERRLVELRNPEGKPGAKGLKALEE 69 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCCC-CHHHHHHHhhc---c----------CcccCCeEEEEECCCCCCCHHHHHHHHH
Confidence 45555555555566778888887753 33333222222 1 223466899999999986 466789999
Q ss_pred HHhhcCCceEEEEecCcccc---cchhhh--ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 019145 178 TMETYSKVTRFFFICNYISR---IIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (345)
Q Consensus 178 ~le~~~~~~~ii~~~n~~~~---l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~ 252 (345)
+++++++++.+|++++..+. +.+.+. ++|.++.|.+++..++..++...++..|+.+++++++.+++.++||++.
T Consensus 70 ~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 70 YLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 99998888888888764332 223343 3899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 253 AITYLQGAARLFG-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 253 ~~~~l~~~~~~~~-~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+.+++++++.+.+ +.||.++|...+....+..+|++++++..++...++..++.|...|++|..|++.|.+++++++.
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~ 228 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQ 228 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999998863 57999999999999999999999999999999999999999999999999999999999998864
|
subunit around DNA forming a DNA sliding clamp. |
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-18 Score=153.19 Aligned_cols=245 Identities=18% Similarity=0.162 Sum_probs=189.9
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
.+...++.+-.+.++|+|+.-.-+...+..+.+.+..+...+.++..+++.+. +...+.+.+.. . +
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~l~~~~~t---~----------~ 72 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDDVLEACQS---L----------P 72 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHHHHHHhhc---c----------C
Confidence 44455665533446999998777777778887766444555667777777643 33333222222 2 2
Q ss_pred CCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhcCC--ceEEEEecCcc---ccc---chhhhccceeEEecCCCHHHH
Q 019145 152 PCPPYKIIILDEADSMTED----AQNALRRTMETYSK--VTRFFFICNYI---SRI---IEPLASRCAKFRFKPLSEEVM 219 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~~~--~~~ii~~~n~~---~~l---~~~l~~r~~~i~~~~~~~~~~ 219 (345)
..+++++|+|++++.+... ....+..++ ++++ ...+++.++.. .++ .+.+.+++..+.|.+++..++
T Consensus 73 lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~ 151 (340)
T PRK05574 73 LFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAEL 151 (340)
T ss_pred ccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHH
Confidence 3356789999999998654 333444555 3333 34445554432 223 567778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHH
Q 019145 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFD 298 (345)
Q Consensus 220 ~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~-~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~ 298 (345)
..|+...++..|+.+++++++.|++.++||++.+.+++++++.+++ +.||.++|.++++...+.++|++++++..++..
T Consensus 152 ~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~ 231 (340)
T PRK05574 152 PQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIK 231 (340)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999873 449999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 299 LANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 299 ~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.++..+..|..+|++|..|++.|.+++++++.-
T Consensus 232 ~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~ 264 (340)
T PRK05574 232 RALRILDGLRLEGEEPIKLLAALQREFRLLLQL 264 (340)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988643
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-19 Score=152.14 Aligned_cols=190 Identities=23% Similarity=0.217 Sum_probs=133.8
Q ss_pred ccccccHHHHHHHHHHHHc---------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceeeeecCCc
Q 019145 61 KDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~---------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~ 124 (345)
++++|.+.+++.+.+++.. ....+++|+||||||||++|+++++.+...... ...+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4688988888766555311 123458999999999999999999987432221 224666654321
Q ss_pred cchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEEEEecC
Q 019145 125 RGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 125 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
.+... ........... +..++|||||++.+ ..+.++.|+..+++....+++|++++
T Consensus 103 ~~~~~g~~~~~~~~~l~~-------------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~ 169 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK-------------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY 169 (287)
T ss_pred HHHHhccchHHHHHHHHH-------------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11000 00000111110 12359999999986 45678899999998777788888775
Q ss_pred ccc-----ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHH
Q 019145 194 YIS-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (345)
Q Consensus 194 ~~~-----~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------s~g~~r~~~~~l~~ 259 (345)
... ...|.+.+|+. .+.|++++.+++..++..++++.+..+++++...+.++ ..||.|.+.+.++.
T Consensus 170 ~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 170 KDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred cHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 321 23589999998 89999999999999999999999999999988777664 24899999999988
Q ss_pred HHHH
Q 019145 260 AARL 263 (345)
Q Consensus 260 ~~~~ 263 (345)
+...
T Consensus 250 ~~~~ 253 (287)
T CHL00181 250 ARMR 253 (287)
T ss_pred HHHH
Confidence 7754
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=148.82 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=135.5
Q ss_pred CCccccc---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 59 QVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
+|++++. +..+...+.++. ....+.++|+||+|+||||+++++++.. ...+ ++... ...+ .+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~------~~~~--i~~~~-~~~~----~~~ 84 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS------DALL--IHPNE-IGSD----AAN 84 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc------CCEE--ecHHH-cchH----HHH
Confidence 7887773 445566665554 2233448999999999999999998765 2222 22211 1111 111
Q ss_pred HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC-ceEEEEecCccc----ccchhhhccc---e
Q 019145 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASRC---A 207 (345)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~l~~r~---~ 207 (345)
.. ..++|+|||++.+.. .+..|+.+++.... ...+|++++... ...+.+++|+ .
T Consensus 85 ~~-----------------~~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 85 AA-----------------AEGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred hh-----------------hcCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 10 113899999998753 34567777765433 455777775432 2468899998 5
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHhhCC
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVSGV 279 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~---~~~~~it~~~v~~~~~~ 279 (345)
++.+.+|+.+++..++++.++..++.+++++++.|++.+.|+++.++..+..+.. ..+..||.+.+++++..
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986665543 34778999999888754
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-18 Score=154.96 Aligned_cols=230 Identities=22% Similarity=0.260 Sum_probs=154.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHH----HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL----ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l----~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...++...|.| +.++|++..+..|...+ ..+..++++|+||||+|||++++.+++.+.... ....++.+++.
T Consensus 19 ~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~ 94 (394)
T PRK00411 19 DEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQ 94 (394)
T ss_pred ChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECC
Confidence 34455556655 35778888877776665 334556799999999999999999999874322 24677888886
Q ss_pred CccchHH-HHHHHHHHHHhh-hcCCCCCC---------CCCCCCeEEEEEcCCCCCC----HHHHHHHHHHHhhcCC-ce
Q 019145 123 DDRGINV-VRTKIKTFAAVA-VGSGQRRG---------GYPCPPYKIIILDEADSMT----EDAQNALRRTMETYSK-VT 186 (345)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~iliiDE~~~l~----~~~~~~l~~~le~~~~-~~ 186 (345)
...+... +......+.... ...+.... ......+.+|+|||+|.+. .+....|+++++..+. ++
T Consensus 95 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v 174 (394)
T PRK00411 95 IDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence 5444322 222222221100 00000000 0012345689999999986 3455566666654433 56
Q ss_pred EEEEecCccc---ccchhhhccce--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---CCCHHHHHHH
Q 019145 187 RFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---QGDLRRAITY 256 (345)
Q Consensus 187 ~ii~~~n~~~---~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~s---~g~~r~~~~~ 256 (345)
.+|+++|... .+.+.+.+++. .+.|+|++.+++.++++.+++.. ...+++++++.+++.+ .||+|.+++.
T Consensus 175 ~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~l 254 (394)
T PRK00411 175 GVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDL 254 (394)
T ss_pred EEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence 7888887653 45677777764 78999999999999999988653 2358999999998887 8999999999
Q ss_pred HHHHHHHh----CCCCCHHHHHHhhCCC
Q 019145 257 LQGAARLF----GSSITSKDLISVSGVI 280 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~~~ 280 (345)
|..++..+ ...|+.++|.++....
T Consensus 255 l~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 255 LRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 98876554 2459999999887765
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=158.96 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=144.5
Q ss_pred CCCCccccccHHHHHHHHHHHHc----------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc--
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET----------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-- 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~----------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 124 (345)
+.+|+++.|.+.++..+...... ..+..+||+||||||||.+|+++++++ +.+++.++++..
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~ 297 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFG 297 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhcc
Confidence 34788999988877666543211 223459999999999999999999998 677888876432
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhhcCCceEE
Q 019145 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~~~~~~~i 188 (345)
.+...++..+...... .+.||+|||+|.+.. .....++.++++....+.+
T Consensus 298 ~~vGese~~l~~~f~~A~~~--------------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEAL--------------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred cccChHHHHHHHHHHHHHhc--------------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1223344444332221 235999999997632 2345677777776667778
Q ss_pred EEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhcCC----CHHHHHHHHHHH
Q 019145 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQG----DLRRAITYLQGA 260 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~s~g----~~r~~~~~l~~~ 260 (345)
|.+||.++.+++++.+ |++ .+.++.|+.++..++++..+.+.+.. .++..++.+++.+.| |++.++......
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~ 443 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYI 443 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 8899999999999987 776 78999999999999999998875533 335557788877644 555555544444
Q ss_pred HHHhCCCCCHHHHHHhhCCCCH
Q 019145 261 ARLFGSSITSKDLISVSGVIPP 282 (345)
Q Consensus 261 ~~~~~~~it~~~v~~~~~~~~~ 282 (345)
+...+..++.+++..++....+
T Consensus 444 A~~~~~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 444 AFYEKREFTTDDILLALKQFIP 465 (489)
T ss_pred HHHcCCCcCHHHHHHHHHhcCC
Confidence 4444677999998887755433
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-17 Score=142.28 Aligned_cols=175 Identities=17% Similarity=0.246 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC-------CCCceeeeec-CCccchHHHHHHHHHHH
Q 019145 68 EVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------YKSRVLELNA-SDDRGINVVRTKIKTFA 138 (345)
Q Consensus 68 ~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (345)
.+++.+.+.++.+..+|+ ||+|++|+||+.++..+++.+.|... ...++..++. ....+.+.+++..+.+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 467788999999988886 79999999999999999999977431 1124444541 23355667776666654
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHH
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~ 218 (345)
..+.. .++++|+|||+++.++...++.|++++|++|+++.+|++++.+.++.++++|||.++.|.+++.++
T Consensus 83 ~~~~~---------~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 83 FSSFV---------QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred cCCcc---------cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 33211 137789999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 219 ~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+.+++... + ++++....++..++| +..++..+.
T Consensus 154 l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~~ 186 (299)
T PRK07132 154 ILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYIN 186 (299)
T ss_pred HHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHHh
Confidence 99998532 3 667777777777775 888887653
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=145.96 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC----------CCCCceeeeecCC---ccchHHHHH
Q 019145 67 EEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE----------LYKSRVLELNASD---DRGINVVRT 132 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~----------~~~~~~~~~~~~~---~~~~~~~~~ 132 (345)
...++.+...+..++.+| +||+||+|+||+++|..+++.+.|.. ..+.++..+.+.. ..+++.+++
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 346788899999999888 58999999999999999999999853 2234455453322 245777777
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEec
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~ 212 (345)
....+...+ ..++++|+|||++|.++.+.+++|++.+|++|+++.+|++|+.+..+.++++|||..+.|+
T Consensus 83 l~~~~~~~p----------~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~ 152 (290)
T PRK05917 83 IKKQIWIHP----------YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIP 152 (290)
T ss_pred HHHHHhhCc----------cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEcc
Confidence 666655443 2357889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHH
Q 019145 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR 251 (345)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r 251 (345)
++. ...++++.+..++..++|+++
T Consensus 153 ~~~---------------~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 153 MEE---------------KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred chh---------------ccCCCHHHHHHHHHHhCCChh
Confidence 862 123678888888888888875
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=168.68 Aligned_cols=218 Identities=19% Similarity=0.221 Sum_probs=161.3
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCC
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (345)
..+++++.+|..+++++|+++.+..+...+.....+|++|+||||||||++++.+++.+.... ..+..++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 347889999999999999999999999999888889999999999999999999999974322 2355666666432
Q ss_pred cc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEEE
Q 019145 124 DR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 124 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii~ 190 (345)
.. ....+.+.++........ ....||||||+|.+. .+..+.|...+++ +...+|.
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~Ig 316 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEK----------EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIG 316 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhc----------cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEE
Confidence 11 111222333332222111 123599999999884 3456778888875 4567777
Q ss_pred ecCc-----ccccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHH
Q 019145 191 ICNY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAIT 255 (345)
Q Consensus 191 ~~n~-----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~ 255 (345)
+||. ....++++.+||..+.+++|+.++...+++..... +++.++++++..+++.+.. -+++++.
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 7764 23568999999999999999999999999976653 4578999999999988854 3888999
Q ss_pred HHHHHHHHh--------CCCCCHHHHHHhh
Q 019145 256 YLQGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 256 ~l~~~~~~~--------~~~it~~~v~~~~ 277 (345)
.++.++... ...|+.++|.+++
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHH
Confidence 998776532 1238888887764
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=148.36 Aligned_cols=231 Identities=21% Similarity=0.308 Sum_probs=156.1
Q ss_pred hhhCCCCCccccccHHHHH----HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 53 EKYRPKQVKDVAHQEEVVR----VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~----~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
+.|.|.. +.+++..+. .+..++.++.+.|++++|+||||||++++.+.+++..... ...++.+||....+..
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~~~~t~~ 87 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeeeeCCCHH
Confidence 4455555 556555554 4556667788888999999999999999999999854322 2237889997765554
Q ss_pred HHHH-HHHHHHHhhhcCCCCCC---------CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh---cCCceEEEEecCcc
Q 019145 129 VVRT-KIKTFAAVAVGSGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYI 195 (345)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~---~~~~~~ii~~~n~~ 195 (345)
.+.. .+..+...+. .+.... .......-+|++||+|.|.....+.|..++.. ....+.+|+++|..
T Consensus 88 ~i~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 88 QVLSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 4333 3332221111 110000 01124567999999999976644555555543 32335567777765
Q ss_pred ---cccchhhhccce--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhC
Q 019145 196 ---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSS---ISQGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 196 ---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~---~s~g~~r~~~~~l~~~~~~~~ 265 (345)
..+.+.+.++.. .+.|+|++.+|+..+|..+++.. .-.+++++++.++. ..+||.|.++..|..++..+.
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 357788888765 68899999999999999998753 23388999888875 458899999999999988773
Q ss_pred ----CCCCHHHHHHhhCCCCHHHHHHH
Q 019145 266 ----SSITSKDLISVSGVIPPEVVEGL 288 (345)
Q Consensus 266 ----~~it~~~v~~~~~~~~~~~~~~l 288 (345)
..++.++|..+..........+.
T Consensus 247 ~~~~~~v~~~~v~~a~~~~~~~~~~~~ 273 (366)
T COG1474 247 REGSRKVSEDHVREAQEEIERDVLEEV 273 (366)
T ss_pred hhCCCCcCHHHHHHHHHHhhHHHHHHH
Confidence 56999999998554444443333
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=147.93 Aligned_cols=186 Identities=21% Similarity=0.198 Sum_probs=134.9
Q ss_pred cccccHHHHHHHHHHHHc----------C-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceeeeecCCcc
Q 019145 62 DVAHQEEVVRVLTNTLET----------A-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDDR 125 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~----------~-----~~~~lll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~ 125 (345)
+++|.+++++.+.+++.. + ...+++|+||||||||++|+++++.+...... ...++.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 578988887766554321 1 12369999999999999999999987432221 2356666653211
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEEEE
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
+ .......+.. ...++|||||++.+ +...++.|++.+++....+++|+
T Consensus 103 ~~~~g~~~~~~~~~~~~-----------------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~ 165 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKR-----------------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVIL 165 (284)
T ss_pred HhhcccchHHHHHHHHH-----------------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 0011111111 12359999999977 34567899999998777888888
Q ss_pred ecCcc--c---ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHH
Q 019145 191 ICNYI--S---RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITY 256 (345)
Q Consensus 191 ~~n~~--~---~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------s~g~~r~~~~~ 256 (345)
+++.. . .+.+++.+|+. .++|++++.+++..++..++++.+..++++++..+.++ ..||.|.+.|.
T Consensus 166 a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ 245 (284)
T TIGR02880 166 AGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNA 245 (284)
T ss_pred eCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 76532 2 24689999997 89999999999999999999999999999999988775 36999999999
Q ss_pred HHHHHHHh
Q 019145 257 LQGAARLF 264 (345)
Q Consensus 257 l~~~~~~~ 264 (345)
++.+....
T Consensus 246 ve~~~~~~ 253 (284)
T TIGR02880 246 IDRARLRQ 253 (284)
T ss_pred HHHHHHHH
Confidence 98887553
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=150.83 Aligned_cols=212 Identities=11% Similarity=0.168 Sum_probs=146.5
Q ss_pred CCCCCcccc-cc--HHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHH
Q 019145 56 RPKQVKDVA-HQ--EEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 56 ~p~~~~~~~-g~--~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
.+.+|+.++ |. ..+......+....+ .++++|+|++|+|||||++++++++... ..+..++.+++.+.. ..+
T Consensus 110 ~~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~~~~f~--~~~ 186 (450)
T PRK14087 110 NENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMSGDEFA--RKA 186 (450)
T ss_pred cccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHHHHH--HHH
Confidence 356888777 43 324455555554322 2459999999999999999999987321 123455555543211 111
Q ss_pred HHHHHH----HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCccc----ccc
Q 019145 131 RTKIKT----FAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RII 199 (345)
Q Consensus 131 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~ 199 (345)
...+.. ..... ......++|+|||++.+. ...++.|+.+++.... ...+|++++... .+.
T Consensus 187 ~~~l~~~~~~~~~~~---------~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~ 257 (450)
T PRK14087 187 VDILQKTHKEIEQFK---------NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFD 257 (450)
T ss_pred HHHHHHhhhHHHHHH---------HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhcc
Confidence 111110 00000 011245699999999986 5667788888775433 235778876543 356
Q ss_pred hhhhccce---eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-----CCCCC
Q 019145 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSIT 269 (345)
Q Consensus 200 ~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-----~~~it 269 (345)
+.+.+|+. .+.+.+|+.+++.++|++.++..|+ .+++++++.|++.++||+|.+.+.|..+..++ +..||
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it 337 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIIT 337 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 88899886 8999999999999999999998885 69999999999999999999999998876443 25799
Q ss_pred HHHHHHhhCC
Q 019145 270 SKDLISVSGV 279 (345)
Q Consensus 270 ~~~v~~~~~~ 279 (345)
.+.+.+++..
T Consensus 338 ~~~v~~~l~~ 347 (450)
T PRK14087 338 IEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHhh
Confidence 9999888753
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-18 Score=158.18 Aligned_cols=204 Identities=21% Similarity=0.184 Sum_probs=137.6
Q ss_pred hhCCCCCccccccHHHHHHHHHHHH------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.....+|++++|.++.+..+.+++. ...+.++||+||||||||++++++++++ +.+++.+++
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~ 121 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISG 121 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccH
Confidence 3445689999999888877766553 1233459999999999999999999997 667777766
Q ss_pred CCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhh
Q 019145 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMET 181 (345)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~ 181 (345)
++.. +...++..+...... .+.||+|||+|.+.. ...+.|+..++.
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~--------------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKN--------------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--------------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 4321 122333333332211 235999999998742 233455555654
Q ss_pred cC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CHHH
Q 019145 182 YS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRR 252 (345)
Q Consensus 182 ~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g----~~r~ 252 (345)
.. ..+.+|.+||.++.+++++.+ |++ .++++.|+.++..++++..+...... ++..+..+++.+.| |++.
T Consensus 188 ~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 188 FGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred ccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHH
Confidence 32 356788889999999999987 565 79999999999999999888654443 34456778877654 4444
Q ss_pred HHHHHHHHHHHh-CCCCCHHHHHHhhC
Q 019145 253 AITYLQGAARLF-GSSITSKDLISVSG 278 (345)
Q Consensus 253 ~~~~l~~~~~~~-~~~it~~~v~~~~~ 278 (345)
+++.....+... ...|+.+++.+++.
T Consensus 267 l~~eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 267 LLNEAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 444332222222 34599999987664
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=154.25 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=144.0
Q ss_pred CCCcccc-cc-HH-HHHHHHHHHHc-CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch--HHH
Q 019145 58 KQVKDVA-HQ-EE-VVRVLTNTLET-AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--NVV 130 (345)
Q Consensus 58 ~~~~~~~-g~-~~-~~~~l~~~l~~-~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~ 130 (345)
.+|++|+ |. .. .......+... +. .+.++|||++|+|||||++++++++.. ...+..++.+++.+.... ..+
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHHHHHHHHHHH
Confidence 4888777 43 22 33344444443 22 234899999999999999999999732 112345555554331100 000
Q ss_pred HH-HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEecCcc----cccchhh
Q 019145 131 RT-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI----SRIIEPL 202 (345)
Q Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~-~~~ii~~~n~~----~~l~~~l 202 (345)
.. ....+.. .....++|+|||++.+.. ..++.|+.+++.... ...+|++++.. ..+.+.|
T Consensus 364 ~~~~~~~f~~------------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL 431 (617)
T PRK14086 364 RDGKGDSFRR------------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRL 431 (617)
T ss_pred HhccHHHHHH------------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHH
Confidence 00 0111111 112457999999999843 346777788876544 34577788754 2467889
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (345)
.+|+. ++.+.+|+.+...++|++.++..++.++++++++|++...+|+|.+...|..+..++ +..||.+.++++
T Consensus 432 ~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~v 511 (617)
T PRK14086 432 RNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIV 511 (617)
T ss_pred HhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 99986 899999999999999999999999999999999999999999999999888776554 667888888776
Q ss_pred hC
Q 019145 277 SG 278 (345)
Q Consensus 277 ~~ 278 (345)
+.
T Consensus 512 L~ 513 (617)
T PRK14086 512 LR 513 (617)
T ss_pred HH
Confidence 64
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-17 Score=142.03 Aligned_cols=148 Identities=22% Similarity=0.306 Sum_probs=116.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------------CCCceeeeecCC--
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNASD-- 123 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------------~~~~~~~~~~~~-- 123 (345)
+....+.+... .++.+| +||+||+|+|||++|+.+++.+.|... .+.+++.+.+..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 34445555544 356666 799999999999999999999987432 124566665521
Q ss_pred --------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 124 --------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..+++.+++........+ ..+.++|+++|+++.++...++.|++.+++++..+.+|++|..+
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p----------~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~ 153 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTS----------VRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAA 153 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCc----------ccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCCh
Confidence 235677777665544332 22467899999999999999999999999988888899999999
Q ss_pred cccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 196 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
..+.+.+.+||..+.|.+++.+++..||..
T Consensus 154 ~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 154 DKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999953
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-18 Score=154.26 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=143.7
Q ss_pred CCCcccc-cc--HHHHHHHHHHHHc-----C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 58 KQVKDVA-HQ--EEVVRVLTNTLET-----A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~-----~-~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.+|++++ |. ..+......+... + ..++++||||+|+||||+++++++++... +..++.+++.... .
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~--~ 182 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFT--E 182 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHH--H
Confidence 3888777 53 3233455555432 1 22459999999999999999999998432 3445555443210 1
Q ss_pred HHHHHHHH--HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCcc----cccc
Q 019145 129 VVRTKIKT--FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRII 199 (345)
Q Consensus 129 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~~----~~l~ 199 (345)
.+...+.. ..... ......++|+|||++.+.. ..++.++.+++... ....+|++++.. ..+.
T Consensus 183 ~~~~~l~~~~~~~f~---------~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 183 HLVSAIRSGEMQRFR---------QFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred HHHHHHhcchHHHHH---------HHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH
Confidence 11111110 00000 0112457999999999853 45667777765432 345677777653 3467
Q ss_pred hhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---HHh---CCCCCH
Q 019145 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA---RLF---GSSITS 270 (345)
Q Consensus 200 ~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~---~~~---~~~it~ 270 (345)
+++.+|+. .+.+.+|+.+++..+|++.++..++.+++++++.|+....+|+|.+.+.+..++ .++ +..||.
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~ 333 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYV 333 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 89999984 899999999999999999999999999999999999999999999999999884 333 567999
Q ss_pred HHHHHhhC
Q 019145 271 KDLISVSG 278 (345)
Q Consensus 271 ~~v~~~~~ 278 (345)
+.+++++.
T Consensus 334 ~~~~~~l~ 341 (445)
T PRK12422 334 DDIKALLH 341 (445)
T ss_pred HHHHHHHH
Confidence 98887765
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=152.32 Aligned_cols=188 Identities=22% Similarity=0.250 Sum_probs=140.5
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
....+|+++-|+++++..|+..+.- ..+..+|||||||||||++|+++|++. ..+|+.+.+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkg 501 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKG 501 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccC
Confidence 3445899999999999999877633 234459999999999999999999998 778888766
Q ss_pred CC------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC-
Q 019145 122 SD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS- 183 (345)
Q Consensus 122 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~- 183 (345)
+. ..+...++..+......++ .|+|+||+|.+.. .+.+.|+.-|+...
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP--------------~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAP--------------CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCC--------------eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 43 3445566777766655432 5999999998843 34567777776433
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~l 257 (345)
.++.+|.+||.++.+++++.+ |++ ++++++|+.+-..++++..+++ .+++++ .++.|++.+.| +-..+.+.+
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVC 645 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHH
Confidence 467778889999999999999 777 8899999999999999888764 556666 58888887654 334445555
Q ss_pred HHHHHHh
Q 019145 258 QGAARLF 264 (345)
Q Consensus 258 ~~~~~~~ 264 (345)
+.++.++
T Consensus 646 q~A~~~a 652 (693)
T KOG0730|consen 646 QEAALLA 652 (693)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=153.44 Aligned_cols=207 Identities=15% Similarity=0.180 Sum_probs=141.2
Q ss_pred CCCcccc-cc--HHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 58 KQVKDVA-HQ--EEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+|++++ |. ..+......+..... .++++||||+|+||||+++++++++.... .+..++.+++.+. ...+...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f--~~~~~~~ 178 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF--LNDLVDS 178 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHHHH
Confidence 3788777 53 333345555554332 34599999999999999999999874321 2345555554321 0111111
Q ss_pred H-----HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCc-cc---ccchh
Q 019145 134 I-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RIIEP 201 (345)
Q Consensus 134 ~-----~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~-~~---~l~~~ 201 (345)
+ ..+.... ....++|+|||++.+. ...+..|+..++.... ...+|++++. +. .+.+.
T Consensus 179 ~~~~~~~~f~~~~-----------~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKEGKLNEFREKY-----------RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred HhcccHHHHHHHH-----------HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 1 1111100 0134699999999874 2345566666654332 2356666653 22 35678
Q ss_pred hhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHH
Q 019145 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (345)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~ 275 (345)
+.+|+. ++.+.+|+.+.+..++++.++..++.+++++++.|++.+.||+|.+...+..+..++ +.+||.+.+.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~ 327 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAIL 327 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 889887 899999999999999999999999999999999999999999999999888776544 67799988877
Q ss_pred hhC
Q 019145 276 VSG 278 (345)
Q Consensus 276 ~~~ 278 (345)
++.
T Consensus 328 ~L~ 330 (440)
T PRK14088 328 LLK 330 (440)
T ss_pred HHH
Confidence 664
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=149.57 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=133.9
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++++ +..++.++++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~ 200 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSE 200 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHH
Confidence 34778899999999888887632 234459999999999999999999998 56677777654
Q ss_pred ccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc----
Q 019145 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (345)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~---- 182 (345)
... ...++..+..... ..+.+|+|||+|.+. ...+..+..++...
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~--------------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELARE--------------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHh--------------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 211 1122222222111 134699999999873 33444555555322
Q ss_pred -CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHH
Q 019145 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYL 257 (345)
Q Consensus 183 -~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~l 257 (345)
..++.+|++||.++.+++++.+ |+. .+.|++|+.++..++++..++...+. .+..+..+++.+.|- .+.+...+
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAIC 345 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHH
Confidence 2467889999999999999986 665 79999999999999999887654432 123367777766442 23333333
Q ss_pred HHHHHHh----CCCCCHHHHHHhhCC
Q 019145 258 QGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
..++..+ ...|+.+|+.+++..
T Consensus 346 ~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 346 TEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3333322 245888888776543
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=137.72 Aligned_cols=192 Identities=19% Similarity=0.225 Sum_probs=125.9
Q ss_pred CCCcccc-c--cHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVA-H--QEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+|+.++ | ++.+............. ..++||||+|+|||||++++++++.... .+..++.+++.+... .+..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f~~--~~~~ 81 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEFIR--EFAD 81 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHHHH--HHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHHHH--HHHH
Confidence 3788776 5 34445555555444332 3489999999999999999999874311 134555555432110 0111
Q ss_pred H-----HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--HHHHHHHHHhhcC-CceEEEEecCcc----cccch
Q 019145 133 K-----IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYS-KVTRFFFICNYI----SRIIE 200 (345)
Q Consensus 133 ~-----~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--~~~~l~~~le~~~-~~~~ii~~~n~~----~~l~~ 200 (345)
. +..+... ....++|+||+++.+... .++.|+.+++... ....+|++++.. ..+.+
T Consensus 82 ~~~~~~~~~~~~~------------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRDGEIEEFKDR------------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHTTSHHHHHHH------------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHcccchhhhhh------------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 1 1111111 124569999999999754 4778888877542 234577777433 23578
Q ss_pred hhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 019145 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 201 ~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~ 264 (345)
.+.+|+. .+.+.+|+.++...++++.+...|+.+++++++.|++...+|+|.+...+..+..++
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Confidence 8989875 899999999999999999999999999999999999999999999999999887653
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=151.53 Aligned_cols=207 Identities=16% Similarity=0.196 Sum_probs=141.1
Q ss_pred CCcccc-ccH--HHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 59 QVKDVA-HQE--EVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~-g~~--~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
+|++++ |.. .+......+..... .+.++|+||+|+||||+++++++++... ..+..++.+++.+... ......
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~~~~~~-~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSSEKFTN-DFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEHHHHHH-HHHHHH
Confidence 677754 532 23445555554422 2348999999999999999999998432 1234556665533110 000000
Q ss_pred ----HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCcc----cccchhh
Q 019145 134 ----IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRIIEPL 202 (345)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~~----~~l~~~l 202 (345)
...+... ....++|+|||++.+.. ..++.|+.+++... ....+|++++.. ..+.+.+
T Consensus 186 ~~~~~~~~~~~------------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l 253 (405)
T TIGR00362 186 RNNKMEEFKEK------------YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERL 253 (405)
T ss_pred HcCCHHHHHHH------------HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhh
Confidence 0011110 01246999999998853 34566777776542 234567777643 2356788
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (345)
.+|+. .+.|++|+.+++..+++..++..++.+++++++.|++.+.||+|.+...+..+..++ +..||.+.+.++
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~ 333 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEA 333 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 89885 799999999999999999999999999999999999999999999777776665443 677999888887
Q ss_pred hCC
Q 019145 277 SGV 279 (345)
Q Consensus 277 ~~~ 279 (345)
+..
T Consensus 334 L~~ 336 (405)
T TIGR00362 334 LKD 336 (405)
T ss_pred HHH
Confidence 653
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=149.61 Aligned_cols=207 Identities=19% Similarity=0.224 Sum_probs=136.1
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
+.++..+.+|+++.|.+..++.+.+++.. ..+.+++|+||||||||++|+++++++ ...++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi 246 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET------SATFL 246 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCCEE
Confidence 34566667999999999999888887742 123459999999999999999999998 55677
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHH-
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM- 179 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~l- 179 (345)
.+.+++... ...++..+..... ..+.+|+|||+|.+. ...+..++.++
T Consensus 247 ~V~~seL~~k~~Ge~~~~vr~lF~~A~~--------------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAEE--------------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN 312 (438)
T ss_pred EEecchhhhhhcchHHHHHHHHHHHHHh--------------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Confidence 776554211 1112222222111 134599999998763 12233344444
Q ss_pred --hh--cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhc----C
Q 019145 180 --ET--YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSIS----Q 247 (345)
Q Consensus 180 --e~--~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s----~ 247 (345)
+. ....+.+|++||..+.+++++.+ |++ .+.|++|+.++...+++....+..+ +++ .+..++..+ +
T Consensus 313 ~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 313 QLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSG 390 (438)
T ss_pred HHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCH
Confidence 32 13467889999999999999875 665 8999999999999999988765543 332 345555444 3
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCHHHHHHhhCC
Q 019145 248 GDLRRAITYLQGAARLFG-SSITSKDLISVSGV 279 (345)
Q Consensus 248 g~~r~~~~~l~~~~~~~~-~~it~~~v~~~~~~ 279 (345)
.|++.++......|...+ ..|+.+|+.+++..
T Consensus 391 AdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 391 ADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 444444333333332223 45899988876543
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=149.57 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=137.8
Q ss_pred CCccccccHHHHHHHHHHHHc----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc--
Q 019145 59 QVKDVAHQEEVVRVLTNTLET----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-- 124 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~----------~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 124 (345)
.|.++-|.+..+..+...+-. | .+..+||+||||||||.+|+++|.++ +.+|+.++++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivS 261 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVS 261 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhc
Confidence 488999999988888776632 1 22349999999999999999999999 889998887542
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-----------HHHHHHHHHhhcC------
Q 019145 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMETYS------ 183 (345)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-----------~~~~l~~~le~~~------ 183 (345)
.+...+++.+....... +.|+||||+|.+.+. ....|+..|++..
T Consensus 262 GvSGESEkkiRelF~~A~~~a--------------PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNA--------------PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ccCcccHHHHHHHHHHHhccC--------------CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 34556777777755443 359999999998642 3456788887643
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
..+.+|-+||.++.++++|++ |++ .|.+.-|+.....++|+.+|+...+.- +-....|++.+.|-+..-+..|...
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~ 406 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCRE 406 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHH
Confidence 346778889999999999998 555 799999999999999999997544432 2237888999888776655555444
Q ss_pred H
Q 019145 261 A 261 (345)
Q Consensus 261 ~ 261 (345)
|
T Consensus 407 A 407 (802)
T KOG0733|consen 407 A 407 (802)
T ss_pred H
Confidence 4
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-17 Score=154.48 Aligned_cols=201 Identities=21% Similarity=0.214 Sum_probs=137.5
Q ss_pred CCCCccccccHHHHHHHHHHH---Hc---------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTL---ET---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+|+++.|.++.+..+...+ +. ..+.++||+||||||||++|++++.++ +.+++.+++++.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f 252 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEF 252 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHH
Confidence 358899999888887766654 21 123459999999999999999999987 667777776542
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------H---HHHHHHHHHhhc--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------D---AQNALRRTMETY-- 182 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~---~~~~l~~~le~~-- 182 (345)
.. ...++..+..... ..+.||+|||+|.+.. . ..+.|+..++..
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~--------------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKE--------------NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhc--------------CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 1122222222211 2345999999998832 2 234444444432
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l~ 258 (345)
...+.+|.+||.++.+++++.+ |++ .+.|.+|+.++...+++..++.... .++..+..+++.+.| +.+++.+.+.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2456788889999999999987 454 7999999999999999998876433 345568889988876 5555555555
Q ss_pred HHHHHh----CCCCCHHHHHHhhC
Q 019145 259 GAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~ 278 (345)
.++..+ ...||.+++.+++.
T Consensus 398 eAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 398 EAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHH
Confidence 444322 34599999987764
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=154.54 Aligned_cols=206 Identities=16% Similarity=0.191 Sum_probs=143.8
Q ss_pred CCcccc-c--cHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 59 QVKDVA-H--QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
+|++++ | +..+......+.... ..++++|+||+|+||||+++++++++.... .+..++.+++.+.. ..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~--~~~~~~ 196 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFT--NDFVNA 196 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHH--HHHHHH
Confidence 777765 4 344556666665542 224589999999999999999999984321 23455555554311 111111
Q ss_pred HH-----HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEecCccc----ccchh
Q 019145 134 IK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYIS----RIIEP 201 (345)
Q Consensus 134 ~~-----~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~ 201 (345)
+. .+... ....++|+|||++.+.. ..++.|+.+++.... ...+|++++.+. .+.+.
T Consensus 197 ~~~~~~~~~~~~------------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 197 LRNNTMEEFKEK------------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHcCcHHHHHHH------------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 11 11110 11346999999998853 345667776664332 234666766432 26688
Q ss_pred hhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHH
Q 019145 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (345)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~ 275 (345)
+.+|+. .+.|.+|+.+++..+++..+...++.+++++++.|++.++||+|.+...|..+..++ +..||.+.+++
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~ 344 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKE 344 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 999985 799999999999999999999999999999999999999999999888887776543 67799999888
Q ss_pred hhCC
Q 019145 276 VSGV 279 (345)
Q Consensus 276 ~~~~ 279 (345)
++..
T Consensus 345 ~l~~ 348 (450)
T PRK00149 345 ALKD 348 (450)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-17 Score=138.85 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=135.3
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeecC-Cc
Q 019145 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS-DD 124 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~~-~~ 124 (345)
.|+.+++.+...+..++.+| +||+|| +||+++|..+++.+.|... ...++..+.+. ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 47888999999999999988 599996 6899999999999987542 12344444332 22
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
..++.+++....+...+. .++++|+|||++|.++....|+|++.+|++++++.+|++|+.+..+.++++|
T Consensus 84 I~idqIR~l~~~~~~~p~----------~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGY----------EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred CCHHHHHHHHHHHhhCcc----------cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH
Confidence 456778877777655432 2467899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l 257 (345)
||..+.|++ +.+++.+++. .+|+ +.+....++..+ |++..++..+
T Consensus 154 Rcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 154 RTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred cceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHh
Confidence 999999976 7777777773 4564 344445555554 5788888776
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=145.49 Aligned_cols=202 Identities=21% Similarity=0.247 Sum_probs=133.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
.+.+|+++.|.+..++.+.+.+.. ..+.+++|+||||||||++++++++.+ +..++.+.++
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s 213 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGS 213 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehH
Confidence 345889999999999888877642 123459999999999999999999987 5566666553
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHH---HHHHhhc
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNAL---RRTMETY 182 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l---~~~le~~ 182 (345)
... +...++..+..... ..+.+|+|||+|.+. ...+..+ +..++..
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A~~--------------~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLARE--------------NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHHh--------------cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 211 11122222222111 234699999999763 1223333 4444432
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~ 256 (345)
..++.+|++||.++.+++++.+ |++ .++|++|+.++...+++..+...++. ++-.+..++..+.| +...+.+.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHH
Confidence 2467789999999999999987 665 79999999999999999888765543 22236677776644 44444444
Q ss_pred HHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 257 LQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 257 l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
+..++..+ + ..|+.+|+.+++.
T Consensus 359 ~~eA~~~A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 359 CQEAGMQAVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 44444333 2 3588888776643
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=159.29 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=150.0
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~ 124 (345)
.+++++.+|..++.++|+++.+..+..++..+..+|++|+||||||||++++.+++.+... ...+..++.++.+..
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 4788889999999999999999999999999999999999999999999999999987422 123345555544321
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEec
Q 019145 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
.....+.+.++......... ....||||||+|.+.. +..+.|...+++ +...+|.+|
T Consensus 255 ~ag~~~~ge~e~~lk~ii~e~~~~---------~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 255 QAGASVKGEFENRLKSVIDEVKAS---------PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred hcccccchHHHHHHHHHHHHHHhc---------CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 11212222333222221110 1346999999999853 233467777765 456677777
Q ss_pred Cc-----ccccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHH
Q 019145 193 NY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYL 257 (345)
Q Consensus 193 n~-----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~~l 257 (345)
+. ....+++|.+||..+.+++|+.++...+|+..... +++.++++++..+++.|.+ -+.+++..+
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdll 403 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLL 403 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHH
Confidence 54 34578999999999999999999999997665542 5688999999999999854 477899999
Q ss_pred HHHHHH
Q 019145 258 QGAARL 263 (345)
Q Consensus 258 ~~~~~~ 263 (345)
+.++..
T Consensus 404 dea~a~ 409 (852)
T TIGR03345 404 DTACAR 409 (852)
T ss_pred HHHHHH
Confidence 887654
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-16 Score=138.48 Aligned_cols=242 Identities=19% Similarity=0.218 Sum_probs=181.8
Q ss_pred HHHHHHcCCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 73 LTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 73 l~~~l~~~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
+...+..+.. +..++||+.-.-....+..+.+... .++........+..+ .... ..+...... +
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~s~----------~ 70 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDDSE-LDWA---DLLSELESP----------S 70 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHh-ccchhhHHhhccccc-CCHH---HHHHHhhcc----------c
Confidence 3444555433 4469999998888888888888774 222222222222222 1222 222222222 2
Q ss_pred CCCCeEEEEEcCCCCCC-HHHHHHHHHHHhhcC-CceEEEEecCcccc---cchhhhcc--ceeEEecCCCHHHHHHHHH
Q 019145 152 PCPPYKIIILDEADSMT-EDAQNALRRTMETYS-KVTRFFFICNYISR---IIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~-~~~~~~l~~~le~~~-~~~~ii~~~n~~~~---l~~~l~~r--~~~i~~~~~~~~~~~~~l~ 224 (345)
..++.++++|...+..+ .+....+.......+ ..+.+++.++..++ ..+.+..- +.++.+.+++..++.+|+.
T Consensus 71 lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 71 LFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIK 150 (334)
T ss_pred cccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHH
Confidence 23455799999888875 555566666666666 55555655644332 22333332 5589999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHH
Q 019145 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (345)
Q Consensus 225 ~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~-~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 303 (345)
.++++.|+.+++++++.++...+||++.+.+++++++.+.++ .||.++|..++......+.|++.+++.+++...|...
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~ 230 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRL 230 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999854 7999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 304 VNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
++.+..+|++|..|++.+.++|+++.
T Consensus 231 l~~L~~~ge~p~~il~~l~~~f~~~~ 256 (334)
T COG1466 231 LRDLLLEGEEPLKLLAALTRQFRLLL 256 (334)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999664
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-16 Score=134.05 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++|+||||+|+|.-+.+.+|.+.+|+. -...+|++|| .|+.++..|++|.-++...|++.++++.+|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 469999999999999999999999974 3345667765 356689999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
+.+++.+++.+++++++.+++.. ..++|.++++|.-+...+ +..|..+||+++..
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 99999999999999999999986 678999999997554444 45799999988743
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-16 Score=130.17 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=131.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCC----------------CCceeeeecC-CccchHHHHHHHHHHHHhhhcCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELY----------------KSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~----------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
+||+||+|+||..+|.++++.+.|.... ..++..+.+. ...+.+.+++....+...+..
T Consensus 10 ~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e---- 85 (261)
T PRK05818 10 LLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE---- 85 (261)
T ss_pred eeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh----
Confidence 7999999999999999999999876421 1233333222 234566677666665432211
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCC----------CHH
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL----------SEE 217 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~----------~~~ 217 (345)
.+.++|+||+++|.++....++|++.+|++|+++.+|++|+.+..+.++++|||..+.|+++ ++.
T Consensus 86 -----~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~ 160 (261)
T PRK05818 86 -----SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDR 160 (261)
T ss_pred -----cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChH
Confidence 13578999999999999999999999999999999999999999999999999999999888 555
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHH
Q 019145 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290 (345)
Q Consensus 218 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~ 290 (345)
++.+.+.... + +++ .++..++|++.++...++.+......-++..++..............++.
T Consensus 161 ~i~~~L~~~~---~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~ 224 (261)
T PRK05818 161 YFQYILLSFY---S--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLN 224 (261)
T ss_pred HHHHHHHHcc---C--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5555543222 2 344 66778899999999988854211111233344444444444444433433
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=146.05 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=133.5
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|+++-+.+++..+|...+-. ..+..+|||||||||||.+|+++|++. +.+|+.+-++.-
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPEL 581 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPEL 581 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHH
Confidence 3788888888888877776643 234459999999999999999999998 788988877542
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC--Cc
Q 019145 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KV 185 (345)
Q Consensus 125 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~--~~ 185 (345)
. +...++..+...... .+.|||+||+|.|. ....+.|+.-++... ..
T Consensus 582 lNkYVGESErAVR~vFqRAR~s--------------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARAS--------------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcC--------------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 2 223344555444333 34699999999983 245677887777543 45
Q ss_pred eEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhc------CCCHHHHHH
Q 019145 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS------QGDLRRAIT 255 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s------~g~~r~~~~ 255 (345)
+.+|.+||.++.+++++++ |++ .+.+.+|+.++...+|+...+..+.++++++ ++.|+... |-|+-.++.
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 6778889999999999998 555 6788899999999999999987777777776 78887643 345544444
Q ss_pred HHH
Q 019145 256 YLQ 258 (345)
Q Consensus 256 ~l~ 258 (345)
...
T Consensus 728 eAs 730 (802)
T KOG0733|consen 728 EAS 730 (802)
T ss_pred HHH
Confidence 433
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=142.13 Aligned_cols=206 Identities=15% Similarity=0.208 Sum_probs=145.6
Q ss_pred CCcccc-c--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-
Q 019145 59 QVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT- 132 (345)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (345)
+|++++ | +.-+......+-...+ .+.++||||+|.|||||++++++.+... ..+..++.+...+. ..+.+..
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~-~~~a~v~y~~se~f-~~~~v~a~ 162 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALAN-GPNARVVYLTSEDF-TNDFVKAL 162 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhh-CCCceEEeccHHHH-HHHHHHHH
Confidence 677666 4 3444455555555432 4559999999999999999999998432 22334554444331 1111111
Q ss_pred ---HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCCce-EEEEecCccc----ccchhh
Q 019145 133 ---KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVT-RFFFICNYIS----RIIEPL 202 (345)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~~~-~ii~~~n~~~----~l~~~l 202 (345)
.+..+.. .. ..++++|||++.+.. ..++.++..++...... .+|++++.+. .+.+.|
T Consensus 163 ~~~~~~~Fk~------------~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL 229 (408)
T COG0593 163 RDNEMEKFKE------------KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRL 229 (408)
T ss_pred HhhhHHHHHH------------hh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHH
Confidence 1111211 12 346999999999864 45777777777554332 5777775443 356899
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (345)
+||+. ++.+.||+.+....+|++.++..++.++++++..++.....|+|.+...+.++..++ +..||.+.|.++
T Consensus 230 ~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~ 309 (408)
T COG0593 230 RSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEI 309 (408)
T ss_pred HHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHH
Confidence 99986 899999999999999999999999999999999999999999999999888777665 567999988887
Q ss_pred hCC
Q 019145 277 SGV 279 (345)
Q Consensus 277 ~~~ 279 (345)
+..
T Consensus 310 L~~ 312 (408)
T COG0593 310 LKD 312 (408)
T ss_pred HHH
Confidence 643
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=133.65 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=124.1
Q ss_pred ceEEEEec--CcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 185 VTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 185 ~~~ii~~~--n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~------~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
.+.+|-+| |+.+.+.++|+|||.++.|.+++.+++..++++.+... .+.+++++++.|++.++||.|.++|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 34445444 77889999999999999999999999999999988742 36799999999999999999999999
Q ss_pred HHHHHHHh-C-C--CCCHHHHHHhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019145 257 LQGAARLF-G-S--SITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVT 322 (345)
Q Consensus 257 l~~~~~~~-~-~--~it~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~ 322 (345)
|+.+.... + . .||.+.|++.+ +..+++.++.++++++++|+++|+.+|..|++.|+||..|.+.|.
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi 167 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML 167 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99976533 2 1 28999998776 456889999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 019145 323 LLLFVL 328 (345)
Q Consensus 323 ~~~~~~ 328 (345)
..-..-
T Consensus 168 i~AsED 173 (300)
T PRK14700 168 CIASED 173 (300)
T ss_pred HHHHhh
Confidence 876644
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=134.54 Aligned_cols=180 Identities=23% Similarity=0.255 Sum_probs=122.3
Q ss_pred CCCccccccHHHHHHHHHHHHc---------CC---CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET---------AN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~---------~~---~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
..|+|+.|..++++-|++++-. +- -..+|++||||||||.+|+++|.+. +..|+.++.+.-.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstlt 282 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLT 282 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhh
Confidence 4788999999998888877632 11 2349999999999999999999998 6778888775432
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC------------HHHHHHHHHHHhhcC----
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETYS---- 183 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~------------~~~~~~l~~~le~~~---- 183 (345)
+ ...++-+++.....++ .+|||||||.+- ..+-+.|+..++...
T Consensus 283 SKwRGeSEKlvRlLFemARfyAP--------------StIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAP--------------STIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCC--------------ceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc
Confidence 2 2334434444333332 499999999882 234456666665322
Q ss_pred -Cc-eEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCCHHHHHHHHHH
Q 019145 184 -KV-TRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQG 259 (345)
Q Consensus 184 -~~-~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~l~~~s~g~~r~~~~~l~~ 259 (345)
.. +-++.+||-+..++.++++|++ .|.++.|+.+.....|+..+. ++.. ++-.++.|++.+.|.-..-+.++++
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR--SVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc--cccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 12 3344457999999999999998 778888888888877766553 3333 3444788888776654444444433
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=140.00 Aligned_cols=200 Identities=21% Similarity=0.199 Sum_probs=138.1
Q ss_pred hhCCCCCccccccHHHHHHHHHHH---Hc--------CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTL---ET--------AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l---~~--------~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
...-.+|+|+-|-++++++|.+.+ +. |+ +..+||+||||||||.+|+++|-+. +.+|+...+
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sG 370 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYASG 370 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEeccc
Confidence 334457999999888887776655 32 22 3459999999999999999999998 778877776
Q ss_pred CCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcCC
Q 019145 122 SDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK 184 (345)
Q Consensus 122 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~~ 184 (345)
+.. .+...+++.+......+ +.||||||+|... +...+.|+--++....
T Consensus 371 SEFdEm~VGvGArRVRdLF~aAk~~A--------------PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 371 SEFDEMFVGVGARRVRDLFAAAKARA--------------PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred cchhhhhhcccHHHHHHHHHHHHhcC--------------CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 542 23345566655544333 3599999999873 2345666666665443
Q ss_pred --ceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC-CHHHHHHHH
Q 019145 185 --VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 185 --~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g-~~r~~~~~l 257 (345)
.+++|.+||.++.++++|.+ ||+ .+..+.|+..-..+++..+..+ +.+++++ ...|++-+.| +--++.|++
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 45566678999999999988 666 7889999999999999888853 5555444 5667776654 233344555
Q ss_pred HHHHHHh----CCCCCHHHHHH
Q 019145 258 QGAARLF----GSSITSKDLIS 275 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~ 275 (345)
..++.++ ...+|+.+++-
T Consensus 515 NqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 515 NQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred HHHHHHHHhcCcccccHHHHhh
Confidence 5555444 24588887753
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-18 Score=144.45 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=130.9
Q ss_pred CcccccccccCCCCCCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCccccc-cHHHHHHHHHHH
Q 019145 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTL 77 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~~~~~l~~~l 77 (345)
|+++|+++...+....+++.+++.. +.|...+.++.+.++++ .+.+|+...+...+|+...+ ....+..+...-
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~lk---~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~ 93 (254)
T PRK06526 17 LAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIR---AARFPARKSLEEFDFDHQRSLKRDTIAHLGTLD 93 (254)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCChhhccCccCCCcchHHHHHHhcCc
Confidence 5677888888889999999999887 67888999999999998 78889887777777776555 344444443322
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
......+++|+||||||||+++.+++.++... +.. +...+. .. .+....................+.+
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~--v~f~t~------~~---l~~~l~~~~~~~~~~~~l~~l~~~d 161 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHR--VLFATA------AQ---WVARLAAAHHAGRLQAELVKLGRYP 161 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCc--hhhhhH------HH---HHHHHHHHHhcCcHHHHHHHhccCC
Confidence 22345689999999999999999999987322 111 111111 11 1111111000000000001123457
Q ss_pred EEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCcccc--------------cchhhhccceeEEecCCCHH
Q 019145 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPLSEE 217 (345)
Q Consensus 158 iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~~~~--------------l~~~l~~r~~~i~~~~~~~~ 217 (345)
+|||||++.++ ....+.|+++++.......+|+++|.+.. +.+.+..++.++.|...+..
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 99999999874 66677889998876656678888876532 23445555667777776543
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=160.88 Aligned_cols=201 Identities=22% Similarity=0.292 Sum_probs=136.5
Q ss_pred cccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH---
Q 019145 62 DVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT--- 132 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (345)
++.|++.+++.+.+++.. ...++++|+||||||||++|+++++.+ +..++.++.........+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEEEeCCCcccHHHHcCCCC
Confidence 577899999888876642 134568999999999999999999998 56677676543222211110
Q ss_pred ---------HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhc---------------CC
Q 019145 133 ---------KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETY---------------SK 184 (345)
Q Consensus 133 ---------~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~---------------~~ 184 (345)
....+... .....||+|||+|.+.++ ..+.|+++++.. ..
T Consensus 395 ~~~g~~~g~i~~~l~~~------------~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKA------------KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred ceeCCCCchHHHHHHHh------------CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 01111100 112349999999999653 346788887631 03
Q ss_pred ceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHH-----HHhC-----CCCCHHHHHHHHHhcC--CCHHH
Q 019145 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEEG-----LNLDAEALSTLSSISQ--GDLRR 252 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~~-----~~i~~~~~~~l~~~s~--g~~r~ 252 (345)
++.+|+|+|....+++++++||.++.|++++.++...+++..+ +..| +.++++++..|++... ...|.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred CEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 5678899999999999999999999999999999999887754 2233 5689999999987542 23444
Q ss_pred HHHHHHHHHH---H--h--C---------CCCCHHHHHHhhCCC
Q 019145 253 AITYLQGAAR---L--F--G---------SSITSKDLISVSGVI 280 (345)
Q Consensus 253 ~~~~l~~~~~---~--~--~---------~~it~~~v~~~~~~~ 280 (345)
+...++.++. . . + -.|+.+++.++++..
T Consensus 543 l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcc
Confidence 4444333321 1 1 1 257888888887754
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=147.07 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=167.9
Q ss_pred cCCCCchHHHhhhccccccCcchhhhhhCCC-C-------C-ccccccHHHHHHHHHHHHc------CCCCcEEEeCCCC
Q 019145 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPK-Q-------V-KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPG 92 (345)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~-------~-~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G 92 (345)
.++.+.+..+-|++-.| .-..||.++-... + + .+-.|-+++++.+.+.+.. -..+.++|+||||
T Consensus 282 m~~~SaE~~ViRnYlDw-ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPG 360 (782)
T COG0466 282 MSPMSAEATVIRNYLDW-LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPG 360 (782)
T ss_pred CCCCCchHHHHHHHHHH-HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCC
Confidence 45666666676766555 4566887654322 1 1 2456778888877776643 2345589999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH---
Q 019145 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--- 169 (345)
Q Consensus 93 ~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--- 169 (345)
+|||++++.+|+.+ +..|+.++-+..+....++..-..+....++.-............++++||+|.++.
T Consensus 361 VGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 361 VGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred CCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 99999999999999 788999988776666666544444333322211000001112345999999999965
Q ss_pred -HHHHHHHHHHhhc-------------C--CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHH-----H
Q 019145 170 -DAQNALRRTMETY-------------S--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----N 228 (345)
Q Consensus 170 -~~~~~l~~~le~~-------------~--~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~ 228 (345)
+...+|+.+++-- . ..+.||+|+|..+.++.+|++|.+++++..++.+|-.++.++++ +
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~ 514 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLK 514 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHH
Confidence 3456788777521 1 36778899999999999999999999999999999988877643 4
Q ss_pred HhC-----CCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHh------C---C--CCCHHHHHHhhCCCC
Q 019145 229 EEG-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAARLF------G---S--SITSKDLISVSGVIP 281 (345)
Q Consensus 229 ~~~-----~~i~~~~~~~l~~~s--~g~~r~~~~~l~~~~~~~------~---~--~it~~~v~~~~~~~~ 281 (345)
.+| +.++++++..|+++. ..-+|.+-..+.+++.-+ + . .|+..++.++++...
T Consensus 515 ~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 515 EHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcc
Confidence 445 458999999998764 222666666665555332 1 1 377778888877643
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=138.15 Aligned_cols=206 Identities=20% Similarity=0.219 Sum_probs=130.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+++.|.+..++.+...+... .+.+++|+||||||||++|+++++.+ ...++.+.+.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~ 190 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGS 190 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchH
Confidence 3447789999999998888877431 23459999999999999999999998 4456655543
Q ss_pred Cccch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh---c--CC
Q 019145 123 DDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---Y--SK 184 (345)
Q Consensus 123 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~---~--~~ 184 (345)
..... ......+........ ...+.+|+|||+|.+. ...+..+.+++.. . ..
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~----------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAK----------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH----------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 21110 000011111111110 0133599999999873 2334445555432 1 34
Q ss_pred ceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRRAITYL 257 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g----~~r~~~~~l 257 (345)
++.+|++||.++.+++++.+ |+. .+.|++|+.++..++++.......+. ++..+..+++.+.| |++.+++..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A 339 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEA 339 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67889999999999999986 555 79999999999999998877544332 11236677777654 444433333
Q ss_pred HHHHHHh-CCCCCHHHHHHhhC
Q 019145 258 QGAARLF-GSSITSKDLISVSG 278 (345)
Q Consensus 258 ~~~~~~~-~~~it~~~v~~~~~ 278 (345)
...+... ...|+.+|+.+++.
T Consensus 340 ~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 340 GMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred HHHHHHhCCCccCHHHHHHHHH
Confidence 2222222 34588888887754
|
Many proteins may score above the trusted cutoff because an internal |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-16 Score=134.75 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++|+||||+|+|+-+....|.+.+|.. -...+|++|| .++.++..+++||-++...|++.+++++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 469999999999999999999999974 3445677776 345578899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAA 261 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~ 261 (345)
.-+|+.+++.+++++++.+.+.. ...+|.+++++.-+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999999875 678999999886543
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=152.13 Aligned_cols=242 Identities=20% Similarity=0.234 Sum_probs=153.2
Q ss_pred CchHHHhhhccccccCcchhhhhhCCCCC----------ccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCH
Q 019145 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGK 95 (345)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GK 95 (345)
..+-.+-|.+-++ --.+||... .+..+ ++..|.+++++.+.+++.. ...+.++|+||||+||
T Consensus 285 ~~e~~~~~~yl~~-~~~~pw~~~-~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GK 362 (784)
T PRK10787 285 SAEATVVRGYIDW-MVQVPWNAR-SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGK 362 (784)
T ss_pred CchHHHHHHHHHH-HHhCCCCCC-CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCH
Confidence 3334444444333 345788553 33332 3577889999888877753 2345689999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH----
Q 019145 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA---- 171 (345)
Q Consensus 96 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~---- 171 (345)
|++++.+++.+ +.+++.++.+.......+......+.....+..............|+++||+|.++++.
T Consensus 363 Ttl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~ 436 (784)
T PRK10787 363 TSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDP 436 (784)
T ss_pred HHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCH
Confidence 99999999988 56677776655433333322111111000000000000001133599999999998764
Q ss_pred HHHHHHHHhhcC---------------CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHH-----Hh-
Q 019145 172 QNALRRTMETYS---------------KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN-----EE- 230 (345)
Q Consensus 172 ~~~l~~~le~~~---------------~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~- 230 (345)
.+.|+++++... .++.+|+|+|.. .+++++++|+.++.|.+++.++..+++++... +.
T Consensus 437 ~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~ 515 (784)
T PRK10787 437 ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNA 515 (784)
T ss_pred HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhC
Confidence 589999987411 456777778776 59999999999999999999999999887763 11
Q ss_pred ----CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHH------hC-----CCCCHHHHHHhhCCCCH
Q 019145 231 ----GLNLDAEALSTLSSISQ--GDLRRAITYLQGAARL------FG-----SSITSKDLISVSGVIPP 282 (345)
Q Consensus 231 ----~~~i~~~~~~~l~~~s~--g~~r~~~~~l~~~~~~------~~-----~~it~~~v~~~~~~~~~ 282 (345)
.+.++++++..|++.+. --.|.+-+.+++.+.. .+ -.|+.+++.++++....
T Consensus 516 l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 516 LKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred CCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 24589999999997542 1133333333333211 12 14899999999987544
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=142.22 Aligned_cols=205 Identities=25% Similarity=0.215 Sum_probs=145.6
Q ss_pred hhCCCCCccccccHHHHHHHHHHHH---c---------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLE---T---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.-.+-.|.|+.|-++++..|.+.+. + .-+..+||+||||||||.||+++|.+. +.+|+.+++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSG 377 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSG 377 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeech
Confidence 3345689999999999887777653 2 223459999999999999999999998 889998888
Q ss_pred CCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH---------------HHHHHHHHHHh
Q 019145 122 SDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---------------DAQNALRRTME 180 (345)
Q Consensus 122 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~---------------~~~~~l~~~le 180 (345)
++. .+...+++++...... .+.+++|||+|.+.. ..++.|+--++
T Consensus 378 SEFvE~~~g~~asrvr~lf~~ar~~--------------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 378 SEFVEMFVGVGASRVRDLFPLARKN--------------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred HHHHHHhcccchHHHHHHHHHhhcc--------------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 652 2233344444443322 345999999998742 23445555555
Q ss_pred hc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 019145 181 TY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 181 ~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
.. ...+.++.+||.++.+++++++ |++ .+.+..|+......++...++.-....++..+..++..+.|....-+.
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence 32 3456777789999999999998 555 789999999999999999887766665666677799998776665444
Q ss_pred HH-HHHHHHh----CCCCCHHHHHHhhC
Q 019145 256 YL-QGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 256 ~l-~~~~~~~----~~~it~~~v~~~~~ 278 (345)
++ ..++..+ ...|+..++..++.
T Consensus 524 n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 524 NLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred hhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 44 3333333 34577777766654
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=140.36 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=116.8
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCc
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSR 115 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~ 115 (345)
+.+.+.+|+++.|.+..++.++..+.. ..+.++|||||||||||++++++++++.... .....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 455667999999999999888887642 2344599999999999999999999984321 11223
Q ss_pred eeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHH
Q 019145 116 VLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRR 177 (345)
Q Consensus 116 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~ 177 (345)
++.+..+.. .....++..+....... ....+.||||||+|.+.. ...+.|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a----------~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA----------SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh----------hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 333333221 11122233333222211 012346999999998732 12356777
Q ss_pred HHhhcC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH
Q 019145 178 TMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237 (345)
Q Consensus 178 ~le~~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 237 (345)
.++... .++.+|.+||.++.+++++.+ |++ .|+|++|+.++...+++.++.. .++++++
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 776433 467788899999999999998 776 6999999999999999988754 4555433
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=148.26 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=125.4
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+.+++.+.+.+.. ..+..+||+||||||||++|+++++++ +.+++.+.+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~ 522 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPE 522 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHH
Confidence 34788999999999888877642 123348999999999999999999998 67788887654
Q ss_pred c------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhh--cC
Q 019145 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMET--YS 183 (345)
Q Consensus 124 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~--~~ 183 (345)
. .+...++..+...... .+.+|+|||+|.+.. ...+.|+..++. ..
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~--------------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQA--------------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhc--------------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 2 1222344444433222 346999999998731 245667777763 23
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCCCHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDLRR 252 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g~~r~ 252 (345)
.++.+|.+||.++.+++++.+ ||+ .+.|++|+.++..++++...+ +..++++ .+..+++.+.|-...
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~la~~t~g~sga 659 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEELAEMTEGYTGA 659 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHHHHHcCCCCHH
Confidence 567788899999999999986 887 789999999999999986654 3444433 478888887664433
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=124.22 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH---------HHHHH
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT---------KIKTF 137 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 137 (345)
..+.+.+..++..+. +++|+||||||||++|+++++.+ +.+++.+++........+.. ....+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 344566666666554 69999999999999999999977 66777777755333222111 01111
Q ss_pred HHhhhc----CCC--CCCCC--CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----------------CceEEEEecC
Q 019145 138 AAVAVG----SGQ--RRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFICN 193 (345)
Q Consensus 138 ~~~~~~----~~~--~~~~~--~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------------~~~~ii~~~n 193 (345)
...... ... ..+.. ......++++||++.++++.++.|+.++++.. +..++|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 000000 000 00000 01233599999999999999999999997532 3567888888
Q ss_pred cc-----cccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----------CCCHHHHHHHHH
Q 019145 194 YI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS----------QGDLRRAITYLQ 258 (345)
Q Consensus 194 ~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s----------~g~~r~~~~~l~ 258 (345)
+. ..+.+++.+||..+.+..|+.++..+++...+ .++++.++.+++.. .-.+|.++...+
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 65 24688999999999999999999999987654 35667766665432 112788887777
Q ss_pred HHHHHhC-CCCCHHHHHHhh
Q 019145 259 GAARLFG-SSITSKDLISVS 277 (345)
Q Consensus 259 ~~~~~~~-~~it~~~v~~~~ 277 (345)
.++.... ..++.+++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 235 VATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHcCCCCCCCcHHHHHHH
Confidence 7776542 336666666553
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=146.16 Aligned_cols=205 Identities=18% Similarity=0.193 Sum_probs=148.2
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~ 124 (345)
.+++++.+|..++.++|+++.+..+...+.....++++|+||||||||++++.+++.+... ...+..++.++....
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 3788999999999999999999999999988888899999999999999999999987321 122445555543221
Q ss_pred c----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEec
Q 019145 125 R----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
. ........+......... .....||||||+|.+.. +..+.|...++. ....+|.+|
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~---------~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaT 309 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTK---------SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGAT 309 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHh---------cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeC
Confidence 0 111122222222221110 01346999999998852 345666666654 456677777
Q ss_pred Ccc-----cccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHH
Q 019145 193 NYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYL 257 (345)
Q Consensus 193 n~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~~l 257 (345)
+.. ...++++.+||..+.+++|+.++...+++..... +++.++++++..++..+.+ -+.+++..+
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 644 3468999999999999999999999999876553 5677899999999988753 388899999
Q ss_pred HHHHHHh
Q 019145 258 QGAARLF 264 (345)
Q Consensus 258 ~~~~~~~ 264 (345)
+.++...
T Consensus 390 d~a~a~~ 396 (852)
T TIGR03346 390 DEAAARI 396 (852)
T ss_pred HHHHHHH
Confidence 9887653
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=129.96 Aligned_cols=213 Identities=21% Similarity=0.213 Sum_probs=151.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
....+++|+...++.+...+..-. ..+++|+|++||||..+|++|++.- ...+.+|+.+||... +.+.+.+.+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S---~R~~~PFVavNcaAi-p~~l~ESELF 213 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS---PRAKGPFIAVNCAAI-PENLLESELF 213 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC---cccCCCceeeecccC-CHHHHHHHhh
Confidence 356789999999998888886533 3359999999999999999998763 334679999999873 4444433222
Q ss_pred HHHH-hhhcCCC-CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------
Q 019145 136 TFAA-VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (345)
Q Consensus 136 ~~~~-~~~~~~~-~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~------- 195 (345)
.... ...+... ..+....++.+.||+||+..++-+.|..|++++++.. -+++||.+||..
T Consensus 214 GhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~ 293 (464)
T COG2204 214 GHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAA 293 (464)
T ss_pred cccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHc
Confidence 2111 1111111 2334456778899999999999999999999998532 357788888653
Q ss_pred cccchhhhccceeEEecCCCH----HHHH----HHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 019145 196 SRIIEPLASRCAKFRFKPLSE----EVMS----SRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (345)
Q Consensus 196 ~~l~~~l~~r~~~i~~~~~~~----~~~~----~~l~~~~~~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~ 263 (345)
..+-+.|..|..++.+.-|+- +++. .++++.++..|. .++++++..+..+. .||+|.+.|.++.++..
T Consensus 294 G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 294 GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 236677788888655544442 4443 344555555544 48999999998875 89999999999999877
Q ss_pred h-CCCCCHHHHH
Q 019145 264 F-GSSITSKDLI 274 (345)
Q Consensus 264 ~-~~~it~~~v~ 274 (345)
+ +..|+.+++.
T Consensus 374 ~~~~~i~~~~l~ 385 (464)
T COG2204 374 SEGPEIEVEDLP 385 (464)
T ss_pred CCccccchhhcc
Confidence 7 4457776644
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-14 Score=123.87 Aligned_cols=227 Identities=16% Similarity=0.181 Sum_probs=136.3
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
..||.....|..|-.-.++..+...+...+..+ .+.++|+||+|+|||++++.+++.+.... ..+..+........
T Consensus 10 ~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~---~~~~~~~~~~~~~~ 85 (269)
T TIGR03015 10 TKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER---VVAAKLVNTRVDAE 85 (269)
T ss_pred CCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC---eEEeeeeCCCCCHH
Confidence 345655555554433334566666666555433 34589999999999999999999874221 11111111111111
Q ss_pred HHHHHHHHHHHHhhhcCCCC-----------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---CCceEEEEecC
Q 019145 128 NVVRTKIKTFAAVAVGSGQR-----------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFICN 193 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---~~~~~ii~~~n 193 (345)
+.+......+ ......... ......+...+++|||++.++....+.+..+.+.. ...+.+++++.
T Consensus 86 ~~l~~i~~~l-G~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~ 164 (269)
T TIGR03015 86 DLLRMVAADF-GLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ 164 (269)
T ss_pred HHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC
Confidence 1111111110 000000000 00001234569999999999988777766554421 22344566654
Q ss_pred ccc--c----cchhhhccce-eEEecCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 194 YIS--R----IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEG----LNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 194 ~~~--~----l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~----~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
... . -...+.+|.. .+++++++.+++..++..++...| ..+++++++.|++.|+|++|.+...+..+..
T Consensus 165 ~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 165 PEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLL 244 (269)
T ss_pred HHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 321 1 1234666644 789999999999999999988665 3689999999999999999996666665544
Q ss_pred Hh----CCCCCHHHHHHhhCC
Q 019145 263 LF----GSSITSKDLISVSGV 279 (345)
Q Consensus 263 ~~----~~~it~~~v~~~~~~ 279 (345)
.+ .+.|+.++|..++..
T Consensus 245 ~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 245 SAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 33 356999999887654
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=143.25 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=146.2
Q ss_pred CCchHHHhhhccccccCcchhhhhhCCCCC----------ccccccHHHHHHHHHHHHcCC------CCcEEEeCCCCCC
Q 019145 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLETAN------CPHMLFYGPPGTG 94 (345)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~g~~~~~~~l~~~l~~~~------~~~lll~G~~G~G 94 (345)
+.++=++.|++-++ ...+||... .+..| ++-.|-+++++.+.+.+..+. .+.++|+||||+|
T Consensus 373 ~~sEfnvtrNYLdw-lt~LPWgk~-S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVG 450 (906)
T KOG2004|consen 373 SSSEFNVTRNYLDW-LTSLPWGKS-STENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVG 450 (906)
T ss_pred cccchhHHHHHHHH-HHhCCCCCC-ChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCC
Confidence 33344444554444 456777542 22232 355677888888888876543 2347999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----H
Q 019145 95 KTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----D 170 (345)
Q Consensus 95 KT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----~ 170 (345)
||++++.+|+.+ +..|+.++-+.-....+++..-..+....++.-..........+.+++|||+|++.. +
T Consensus 451 KTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGD 524 (906)
T KOG2004|consen 451 KTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGD 524 (906)
T ss_pred cccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCC
Confidence 999999999999 777888877655555444433322222211100000000112345999999999864 3
Q ss_pred HHHHHHHHHhhc------------C---CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHH-----HHh
Q 019145 171 AQNALRRTMETY------------S---KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEE 230 (345)
Q Consensus 171 ~~~~l~~~le~~------------~---~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~ 230 (345)
...+|+++++.- + ..+.||+|+|..+.++++|++|.++|++..|..+|-.++..+++ +.+
T Consensus 525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~ 604 (906)
T KOG2004|consen 525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDC 604 (906)
T ss_pred hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHc
Confidence 456777777521 1 35678889999999999999999999999999999988877754 344
Q ss_pred C-----CCCCHHHHHHHHHhc--CCCHHHHHHHHHHHH
Q 019145 231 G-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAA 261 (345)
Q Consensus 231 ~-----~~i~~~~~~~l~~~s--~g~~r~~~~~l~~~~ 261 (345)
| +.++++++..|+++. ..-+|.+...+++++
T Consensus 605 gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 605 GLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred CCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4 558999988887653 223666666665554
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=128.50 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=133.3
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC---CceeeeecC-C--------
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK---SRVLELNAS-D-------- 123 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~~~-~-------- 123 (345)
.|..|.+++|+++++..+.-.+-..+..++||+|+||||||++++++++.+.+..... ..+..+.+. +
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 4788999999999998887655434456799999999999999999999983211100 011000000 0
Q ss_pred -------------ccchHHHHHHHHHHHHhhhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------
Q 019145 124 -------------DRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------ 183 (345)
Q Consensus 124 -------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------ 183 (345)
..+.+.+...+.-......+. ...++....+..++|++||++.++.+.++.|++.+++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEEC
Confidence 000000000000000000000 011222233556799999999999999999999998642
Q ss_pred -------CceEEEEecCccc-ccchhhhccce-eEEecCCCH-HHHHHHHHHHHH-------------------------
Q 019145 184 -------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN------------------------- 228 (345)
Q Consensus 184 -------~~~~ii~~~n~~~-~l~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~~~------------------------- 228 (345)
..+.++.++|... .+.+++..||. .+.+.++.. ++..+++.+...
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG 242 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH
Confidence 2334444556533 57889999987 566666655 555555554211
Q ss_pred ----HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHh---C-CCCCHHHHHHhh
Q 019145 229 ----EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 229 ----~~~~~i~~~~~~~l~~~s---~-g~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~ 277 (345)
-..+.++++.++++++.+ + ..+|..+..+..+...+ | ..|+.+||.++.
T Consensus 243 a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 243 ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 123568898888887654 2 35777666555444333 4 459999998775
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=141.01 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=148.5
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCcc
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDDR 125 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~ 125 (345)
.+++.-+...++.++|++..+..+...+.....+|++|+||||||||++++.+++.+.... ..+..++.++.....
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll 254 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh
Confidence 3555557778889999999999999999888888999999999999999999998863221 123334433321100
Q ss_pred ----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEEEec
Q 019145 126 ----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
........+......... ....+|||||+|.+. .+..+.|..++.. ....+|.+|
T Consensus 255 aG~~~~Ge~e~rl~~l~~~l~~----------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgAT 322 (758)
T PRK11034 255 AGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST 322 (758)
T ss_pred cccchhhhHHHHHHHHHHHHHh----------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecC
Confidence 011122222222111100 123599999999872 2334556666654 456777777
Q ss_pred Cccc-----ccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcC------CCHHHHHHHH
Q 019145 193 NYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQ------GDLRRAITYL 257 (345)
Q Consensus 193 n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~------g~~r~~~~~l 257 (345)
+... ..++++.+||+.+.+++|+.++...+|+.... .+++.++++++..+++.+. .-+.+++..+
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence 6542 46899999999999999999999999987554 4678899999999887663 2467899999
Q ss_pred HHHHHHh--------CCCCCHHHHHHhh
Q 019145 258 QGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~--------~~~it~~~v~~~~ 277 (345)
+.++... ...|+.++|.+++
T Consensus 403 dea~a~~~~~~~~~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 403 DEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_pred HHHHHhhccCcccccccccChhhHHHHH
Confidence 8887533 1237777776664
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-15 Score=120.75 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=112.9
Q ss_pred CCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-
Q 019145 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (345)
++.++-|-+-.++.+++.+.- ..+..+|+|||||||||.+++++|+.. ...|+.+.++..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvvgsefv 226 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSEFV 226 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeeccHHHH
Confidence 667787776666666666543 344569999999999999999999987 667787776542
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh-----cC
Q 019145 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----YS 183 (345)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~-----~~ 183 (345)
.+...++..+...... ...++||||+|.+. .+++..|+.++.. ..
T Consensus 227 qkylgegprmvrdvfrlaken--------------apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKEN--------------APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHHhccCcHHHHHHHHHHhcc--------------CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 2233344444433222 33599999999873 3456666666653 23
Q ss_pred CceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCC
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (345)
.++.+|+++|..+.++|++.+-+. .++|+-++..+.+-++..++.+.++.
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 578999999999999999998443 79999999999888888888776654
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=150.53 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=136.9
Q ss_pred ccccccHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++||+.++..+.+.+... ..| .++|+||+|||||.+|+++++.+++. ...++.++++.......+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhhhhhc
Confidence 46789999999888887541 112 37999999999999999999998543 2356666654422221111
Q ss_pred HHHHHHHHhhhcC------CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~------~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+ ..+++. +.........++.||++||++.++++.++.|++++++.. .++.+|+|+|.
T Consensus 643 ~l~----g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLK----GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccc----CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 111 000000 000000112467899999999999999999999999765 67888999863
Q ss_pred c-----------------------------cccchhhhccceeEEecCCCHHHHHHHHHHHHHH-------h-CC--CCC
Q 019145 195 I-----------------------------SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE-------E-GL--NLD 235 (345)
Q Consensus 195 ~-----------------------------~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~-~~--~i~ 235 (345)
. ..+.|++.+|+.++.|.|++.+++.+++...+.. . |+ .++
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~ 798 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYS 798 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEEC
Confidence 1 0156788899999999999999999998876543 1 43 589
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHH
Q 019145 236 AEALSTLSSISQG---DLRRAITYLQGAA 261 (345)
Q Consensus 236 ~~~~~~l~~~s~g---~~r~~~~~l~~~~ 261 (345)
+++++.|++.+.+ ..|.+.+.++...
T Consensus 799 d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 799 EALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999999999876 7888888887643
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-15 Score=139.49 Aligned_cols=217 Identities=20% Similarity=0.244 Sum_probs=150.0
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+.+..+++.++|+...++.+.+.++.- ...+++|+|++||||+++|+.+++... ....+|+.++|..... ..+.
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~---r~~~pfv~i~c~~~~~-~~~~ 264 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP---RAKRPFVKVNCAALSE-TLLE 264 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeecCCCCH-HHHH
Confidence 455568899999988888877776543 334699999999999999999998742 2356899999986422 2222
Q ss_pred HHHHHHHHhhh-cC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc---
Q 019145 132 TKIKTFAAVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI--- 195 (345)
Q Consensus 132 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~--- 195 (345)
..+-....... +. ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++..
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 11100000000 00 011222334566799999999999999999999998632 146788887543
Q ss_pred ----cccchhhhccce--eEEecCCC--HHHHHHHHHHHHHH----hC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 019145 196 ----SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICNE----EG--LNLDAEALSTLSSIS-QGDLRRAITYLQGA 260 (345)
Q Consensus 196 ----~~l~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~~----~~--~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~ 260 (345)
..+.+.+..|+. .+.++|+. .+++..++..++.+ .+ +.+++++++.|..+. .||+|.+.+.++.+
T Consensus 345 ~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a 424 (534)
T TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERT 424 (534)
T ss_pred HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 234556667765 56777776 46776666665543 22 568999999999985 99999999999998
Q ss_pred HHHh-CCCCCHHHHH
Q 019145 261 ARLF-GSSITSKDLI 274 (345)
Q Consensus 261 ~~~~-~~~it~~~v~ 274 (345)
+..+ +..|+.+++.
T Consensus 425 ~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 425 ATLSRSGTITRSDFS 439 (534)
T ss_pred HHhCCCCcccHHHCc
Confidence 8765 4568888764
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=130.65 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=109.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
.++||||||||||.+++++++++ +.+++.+++++. .+...+++.+......... .....
T Consensus 150 gllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~---------~~aPc 214 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKK---------KGKMS 214 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhc---------cCCCe
Confidence 37999999999999999999999 778888877542 3344566666554432200 12456
Q ss_pred EEEEcCCCCCCHH-----------H-HHHHHHHHhh--------------cCCceEEEEecCcccccchhhhc--cceeE
Q 019145 158 IIILDEADSMTED-----------A-QNALRRTMET--------------YSKVTRFFFICNYISRIIEPLAS--RCAKF 209 (345)
Q Consensus 158 iliiDE~~~l~~~-----------~-~~~l~~~le~--------------~~~~~~ii~~~n~~~~l~~~l~~--r~~~i 209 (345)
||+|||+|.+... . ...|+..++. ....+.+|++||.++.++++|++ |++.+
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 9999999976321 1 2456666653 23457789999999999999999 88764
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~ 249 (345)
|..|+.++..++++..++..+ ++...+..|++...|-
T Consensus 295 -i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 295 -YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred -eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 458999999999999888765 4578888999888764
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-17 Score=137.75 Aligned_cols=198 Identities=16% Similarity=0.234 Sum_probs=124.2
Q ss_pred CcccccccccCCCCCCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCccccc-cHHHHHHHH---
Q 019145 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLT--- 74 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~~~~~l~--- 74 (345)
|+.+|+++...+....+++.+++.. +.|...+.++..+++++ .+.+|....+....|+...+ .+.....+.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk---~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~ 100 (269)
T PRK08181 24 IKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLA---EAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGD 100 (269)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHH
Confidence 4567788888888899999999887 67888888888888888 67777654455545544333 234444443
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 019145 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (345)
Q Consensus 75 ~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (345)
.|+.. ..+++|+|||||||||++.++++++... +..++.++..+ +...+..... ............
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~~~------L~~~l~~a~~---~~~~~~~l~~l~ 166 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRTTD------LVQKLQVARR---ELQLESAIAKLD 166 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeHHH------HHHHHHHHHh---CCcHHHHHHHHh
Confidence 56653 4579999999999999999999987332 22333333211 1111111000 000000000112
Q ss_pred CeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCcccc--------------cchhhhccceeEEecCCC
Q 019145 155 PYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPLS 215 (345)
Q Consensus 155 ~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~~~~--------------l~~~l~~r~~~i~~~~~~ 215 (345)
+.++|||||++..+ ......|+++++.......+|+++|.+.. +.+.|..+|.++.|...+
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 45699999998874 45567899999877666778999875422 224444455677776654
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=140.60 Aligned_cols=191 Identities=29% Similarity=0.375 Sum_probs=138.1
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++||++++..+.+.++..+ ..+.+|.||+|+|||.+|+++|..+++. ...++.++++.....+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHHHHHH
Confidence 357899999999999886521 1247999999999999999999999654 3577888887755554443
Q ss_pred HHHHHHHHhhhcC------CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~------~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+ ..++++ +..+......++.||++||+++.+++.++.|++++++.. .++.||+|+|-
T Consensus 568 rLI----GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred HHh----CCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 332 223321 112222345678999999999999999999999999643 47888999852
Q ss_pred cc----------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCH
Q 019145 195 IS----------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDA 236 (345)
Q Consensus 195 ~~----------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~i~~ 236 (345)
-. .+.|+++.|.+ ++.|.+++.+.+.+++..... ..++ .+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 10 14577778887 999999999999888877554 3344 4799
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHH
Q 019145 237 EALSTLSSISQ---GDLRRAITYLQ 258 (345)
Q Consensus 237 ~~~~~l~~~s~---g~~r~~~~~l~ 258 (345)
++...|++.+. .-.|-+.+.++
T Consensus 724 ~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 724 EAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHHHhccCCCcCchHHHHHHH
Confidence 99999998763 22444444444
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=142.65 Aligned_cols=175 Identities=22% Similarity=0.291 Sum_probs=123.7
Q ss_pred cccccHHHHHHHHHHHHcC--------C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~--------~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.++||++++..+...+... + ..+++|+||||||||.+|+.+++.+ +.+++.++++.......+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l------~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh------CCCcEEeechhhcccccHHH
Confidence 5789999999998888731 1 2348999999999999999999998 45777787765433222221
Q ss_pred HHHHHHHhhhcCC-CCCC-----CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc
Q 019145 133 KIKTFAAVAVGSG-QRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI 195 (345)
Q Consensus 133 ~~~~~~~~~~~~~-~~~~-----~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~ 195 (345)
.+. .+.+.. ...+ .....+++||++||++.++++.++.|++++++.. .++.+|+++|..
T Consensus 533 LiG----~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g 608 (758)
T PRK11034 533 LIG----APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_pred HcC----CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence 111 110000 0000 0112356799999999999999999999998642 356688888722
Q ss_pred -------------------------cccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCHHHHH
Q 019145 196 -------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDAEALS 240 (345)
Q Consensus 196 -------------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~i~~~~~~ 240 (345)
..+.|.+..|++ ++.|.|++.+++..++...+. ..|+ .+++++++
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 125588888987 899999999999998876553 2344 47999999
Q ss_pred HHHHhc
Q 019145 241 TLSSIS 246 (345)
Q Consensus 241 ~l~~~s 246 (345)
.|++..
T Consensus 689 ~l~~~~ 694 (758)
T PRK11034 689 WLAEKG 694 (758)
T ss_pred HHHHhC
Confidence 999765
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=118.86 Aligned_cols=207 Identities=22% Similarity=0.270 Sum_probs=134.7
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~ 115 (345)
+..+++....+++-+-|.+..++.+++.+.- ..+..+|||||||||||.+|+++++.. ...
T Consensus 135 LMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~ 208 (404)
T KOG0728|consen 135 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCT 208 (404)
T ss_pred HHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceE
Confidence 3455565444555444578888888887754 234569999999999999999999987 667
Q ss_pred eeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHH
Q 019145 116 VLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRT 178 (345)
Q Consensus 116 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~ 178 (345)
|+.++++.. .+...+++.+-.....+ +.++|.||+|.+. .+++..++.+
T Consensus 209 firvsgselvqk~igegsrmvrelfvmareha--------------psiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 209 FIRVSGSELVQKYIGEGSRMVRELFVMAREHA--------------PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred EEEechHHHHHHHhhhhHHHHHHHHHHHHhcC--------------CceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 888877542 22223334333333222 3599999999883 3566677777
Q ss_pred Hhhc-----CCceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCH
Q 019145 179 METY-----SKVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDL 250 (345)
Q Consensus 179 le~~-----~~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~ 250 (345)
+... ..+..+|++||..+-+++++.+-.. .++|+||+.+...++++-..++.++. -.-.+..|++.-.|-.
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGAS 353 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCc
Confidence 6643 3578899999999999999998554 79999999999999988776654432 1112455665543322
Q ss_pred H-HHHHHHHHHHHHh----CCCCCHHHHHHh
Q 019145 251 R-RAITYLQGAARLF----GSSITSKDLISV 276 (345)
Q Consensus 251 r-~~~~~l~~~~~~~----~~~it~~~v~~~ 276 (345)
. .....+..+..++ .-.+|.+|.+-+
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfema 384 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMA 384 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHH
Confidence 2 2222333333333 123666665444
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=143.93 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=146.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~ 124 (345)
.+++++.+|..++.++|+++.+..+...+.....++++|+||||||||++++.++..+.... ..+..++.++....
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 47888999999999999999999999999998888999999999999999999999984311 22456666554331
Q ss_pred c----chH----HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEE
Q 019145 125 R----GIN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 125 ~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~i 188 (345)
. ... .+...+...... ....||||||+|.+.. +..+.|...+++ +...+
T Consensus 246 ~ag~~~~g~~e~~lk~~~~~~~~~-------------~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~ 310 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQ-------------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHC 310 (857)
T ss_pred hhccchhhhhHHHHHHHHHHHHHc-------------CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeE
Confidence 1 111 223333322111 1345999999999853 356777777765 46677
Q ss_pred EEecCccc-----ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHH
Q 019145 189 FFICNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRA 253 (345)
Q Consensus 189 i~~~n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~------g~~r~~ 253 (345)
|.+|+... ..++++.+||+.+.+..|+.++...+++..... +++.++++++...+..+. --+.++
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkA 390 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKA 390 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHH
Confidence 77776543 478999999998999999999999988776543 467788999888766653 346677
Q ss_pred HHHHHHHHHH
Q 019145 254 ITYLQGAARL 263 (345)
Q Consensus 254 ~~~l~~~~~~ 263 (345)
+..++.++..
T Consensus 391 i~LiD~aaa~ 400 (857)
T PRK10865 391 IDLIDEAASS 400 (857)
T ss_pred HHHHHHHhcc
Confidence 8877777654
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-15 Score=136.61 Aligned_cols=184 Identities=23% Similarity=0.262 Sum_probs=129.7
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
.+.|.---+|+|+-|-++++..+.+.|.. + ....+|||||||||||.+|+++|.++ +.+|+.
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlS 735 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLS 735 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEe
Confidence 34444445999999999999999887754 1 12349999999999999999999998 777777
Q ss_pred eecCC------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-------------HHHHHHHHHH
Q 019145 119 LNASD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------------DAQNALRRTM 179 (345)
Q Consensus 119 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-------------~~~~~l~~~l 179 (345)
+.++. ..+...+++.++..... .+.|||+||+|.+.+ .....|+.-+
T Consensus 736 VKGPELLNMYVGqSE~NVR~VFerAR~A--------------~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 736 VKGPELLNMYVGQSEENVREVFERARSA--------------APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801 (953)
T ss_pred ecCHHHHHHHhcchHHHHHHHHHHhhcc--------------CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh
Confidence 76543 34556777777776554 446999999999953 2345566666
Q ss_pred hhcC----CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhc-----
Q 019145 180 ETYS----KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS----- 246 (345)
Q Consensus 180 e~~~----~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s----- 246 (345)
+..+ ..+.+|-+||+++.+++++.+ ||+ .++..+.+.++-+..+.+... ..+.+++++ +..|++.|
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLdedVdL~eiAk~cp~~~T 880 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDEDVDLVEIAKKCPPNMT 880 (953)
T ss_pred hcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCCCcCHHHHHhhCCcCCc
Confidence 5433 456677789999999999998 677 566777665555544444332 234566665 77888776
Q ss_pred CCCHHHHHH
Q 019145 247 QGDLRRAIT 255 (345)
Q Consensus 247 ~g~~r~~~~ 255 (345)
|-|+..++.
T Consensus 881 GADlYsLCS 889 (953)
T KOG0736|consen 881 GADLYSLCS 889 (953)
T ss_pred hhHHHHHHH
Confidence 456655443
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=139.52 Aligned_cols=204 Identities=20% Similarity=0.149 Sum_probs=138.0
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+.....+|.++.|....+..+.+.+.- ..+++++|+||||||||++++++++++ +.+++.++
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~------~~~f~~is 217 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTIS 217 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCEEEEe
Confidence 334456788888887777666554421 123459999999999999999999998 66777777
Q ss_pred cCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHh
Q 019145 121 ASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTME 180 (345)
Q Consensus 121 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le 180 (345)
+.+.. +...++..+..... ..+.+|||||+|.+.. ...+.++..++
T Consensus 218 ~~~~~~~~~g~~~~~~~~~f~~a~~--------------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 218 GSDFVEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hHHhHHhhhcccHHHHHHHHHHHHh--------------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 65421 22233333333211 1335999999998832 13455555565
Q ss_pred hcC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CHH
Q 019145 181 TYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLR 251 (345)
Q Consensus 181 ~~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g----~~r 251 (345)
... ..+.+|.+||.++.+++++.+ |++ .+.|+.|+.++..++++..+....+. .+..+..+++.+.| |+.
T Consensus 284 g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHH
Confidence 433 356777889999999999986 776 78999999999999999888654332 12235678887766 666
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHhh
Q 019145 252 RAITYLQGAARLFG-SSITSKDLISVS 277 (345)
Q Consensus 252 ~~~~~l~~~~~~~~-~~it~~~v~~~~ 277 (345)
.+++.....+...+ ..|+..++.++.
T Consensus 363 ~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 363 NLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 66666555444333 458898887654
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=122.07 Aligned_cols=210 Identities=19% Similarity=0.200 Sum_probs=140.0
Q ss_pred CCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+++++|....+..+.+.+.. ....+++|+|++||||+++|+++.... .....+|+.++|.... ...+...+-.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s---~r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC---CccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 456789988887777666654 233459999999999999999998653 2235689999998742 2222222111
Q ss_pred HHHhh-hcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVA-VGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~-~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
..... .+. ....+....+..+.|+|||++.++...|..|+.++++.. .++++|++++.. .
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 00000 000 001122234556799999999999999999999997532 246788877543 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHH----HHHhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~----~~~~~----~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~ 263 (345)
.+.+.+..++. .+.++|+.. +|+..++..+ +.+.+ ..+++++++.|..+. .||+|.+.+.++.++..
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 45577777875 677777754 5666555554 33333 248999999999876 89999999999998866
Q ss_pred h-CCCCCHHH
Q 019145 264 F-GSSITSKD 272 (345)
Q Consensus 264 ~-~~~it~~~ 272 (345)
+ +..++.++
T Consensus 240 ~~~~~~~~~~ 249 (326)
T PRK11608 240 HGTSEYPLDN 249 (326)
T ss_pred cCCCCCchhh
Confidence 5 33454443
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=129.17 Aligned_cols=216 Identities=17% Similarity=0.165 Sum_probs=146.1
Q ss_pred CCCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (345)
..+|++++|....++.+.+.+.. ....+++|+|++||||+++|+.+++.- ...+.+|+.+||..... ..+...+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S---~r~~~pfv~inC~~l~e-~lleseL 283 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS---GRRDFPFVAINCGAIAE-SLLEAEL 283 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc---CcCCCCEEEeccccCCh-hHHHHHh
Confidence 35788999999888888877753 334569999999999999999998763 23467899999986422 2222211
Q ss_pred HHHHHhhhcCC---CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc----
Q 019145 135 KTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS---- 196 (345)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~---- 196 (345)
-.......... ...+....+..+.||+||++.++...|..|++++++.. .++++|++++...
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred cCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 11100000000 01111223556799999999999999999999998642 2347888875432
Q ss_pred ---ccchhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhCCCCCHHHHHH-------HHHhc-CCCHHHHHHHH
Q 019145 197 ---RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGLNLDAEALST-------LSSIS-QGDLRRAITYL 257 (345)
Q Consensus 197 ---~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~~i~~~~~~~-------l~~~s-~g~~r~~~~~l 257 (345)
.+.+.+..|+. .+.++|+.+ +|+..++..++. ..++.+++++++. |..+. .||+|.+.|.+
T Consensus 364 ~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvi 443 (526)
T TIGR02329 364 QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLV 443 (526)
T ss_pred hhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHH
Confidence 24445666665 677777754 566655555443 4466799999887 76654 89999999999
Q ss_pred HHHHHHh----CCCCCHHHHHHh
Q 019145 258 QGAARLF----GSSITSKDLISV 276 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~ 276 (345)
+.++... +..|+.+++...
T Consensus 444 er~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 444 ERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHhcccCCCCccCHHHhhhh
Confidence 9988764 346888886543
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=127.60 Aligned_cols=198 Identities=15% Similarity=0.198 Sum_probs=133.8
Q ss_pred hCCCCCccccccHHHHHHH----HHHHHcC-------C--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 55 YRPKQVKDVAHQEEVVRVL----TNTLETA-------N--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l----~~~l~~~-------~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.+|.+|+-++-.++.++.| ...++.. . ....|||||||||||+++.|+|+.+ +++++.++-
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeL 268 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLEL 268 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeee
Confidence 4677888888666655544 4444331 1 2349999999999999999999999 888888887
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-------H-----------HHHHHHHHHHhhcC
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-------E-----------DAQNALRRTMETYS 183 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-------~-----------~~~~~l~~~le~~~ 183 (345)
+......+++.++... .+..||+|+|+|.-. + -....|++.++..-
T Consensus 269 t~v~~n~dLr~LL~~t----------------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 269 TEVKLDSDLRHLLLAT----------------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred ccccCcHHHHHHHHhC----------------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 6655555566665543 244699999998751 0 12456888888543
Q ss_pred ----CceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 184 ----KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 184 ----~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
...++|+|||..++++|+|.+++. .+++.-.+.+..+....++..... +......|.+
T Consensus 333 Sscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~------------ 397 (457)
T KOG0743|consen 333 SSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIER------------ 397 (457)
T ss_pred ccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHH------------
Confidence 245789999999999999999554 688888899999988887763322 2333333322
Q ss_pred HHHHHHHhCCCCCHHHHHHhhCCC---CHHHHHHHHHHHHc
Q 019145 257 LQGAARLFGSSITSKDLISVSGVI---PPEVVEGLFAVCRS 294 (345)
Q Consensus 257 l~~~~~~~~~~it~~~v~~~~~~~---~~~~~~~l~~~~~~ 294 (345)
...+..+|+++|.+.+-.. .+..+..+++++..
T Consensus 398 -----l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 398 -----LIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred -----HhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 1124558888887665332 23344555554443
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=128.78 Aligned_cols=216 Identities=18% Similarity=0.191 Sum_probs=143.5
Q ss_pred CCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcC-----CCCCCCceeeeecCCccchHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFG-----PELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
..|++++|+...+..+...+.. ....+++|+|++||||+.+|+.+.+.+.. ....+.+|+.+||.... ...+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~-e~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA-ESLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC-hhhH
Confidence 4688999999888888877754 33446999999999999999999987320 12346789999998642 2222
Q ss_pred HHHHHHHHHhhhcCC---CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc
Q 019145 131 RTKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~ 196 (345)
...+-.......... .+.+....+..+.|||||++.++...|..|++++++.. .++++|++++..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 222111111000000 11222234567799999999999999999999998632 2457888876432
Q ss_pred -------ccchhhhccce--eEEecCCCH--HHHHHHHHHHHHH----hCCCCCHHHH-------HHHHHh-cCCCHHHH
Q 019145 197 -------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EGLNLDAEAL-------STLSSI-SQGDLRRA 253 (345)
Q Consensus 197 -------~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~~~i~~~~~-------~~l~~~-s~g~~r~~ 253 (345)
.+.+.+..|+. .+.++|+.+ +|+..++..++.+ .+.+++++++ +.|..+ ..||+|.+
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 23345666665 566777654 5676666665543 5667888776 445554 48999999
Q ss_pred HHHHHHHHHHhC----CCCCHHHHH
Q 019145 254 ITYLQGAARLFG----SSITSKDLI 274 (345)
Q Consensus 254 ~~~l~~~~~~~~----~~it~~~v~ 274 (345)
.|.++.++.+.. ..|+.+++.
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHhh
Confidence 999999887653 346766654
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=126.76 Aligned_cols=206 Identities=18% Similarity=0.200 Sum_probs=137.8
Q ss_pred ccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (345)
++|+...++.+.+.+..- ...+++|+|++||||+++|++++... .....+|+.++|.... ...+...+-.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s---~r~~~pfv~vnc~~~~-~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS---KRWQGPLVKLNCAALS-ENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc---CccCCCeEEEeCCCCC-hHHHHHHHhccccc
Confidence 356666666655555442 23459999999999999999998764 2235689999998632 22222211110000
Q ss_pred hh-c-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cccch
Q 019145 141 AV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIE 200 (345)
Q Consensus 141 ~~-~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l~~ 200 (345)
.. + .....+....+..+.|+|||++.++...|..|+.++++.. .++++|++++.. ..+.+
T Consensus 77 ~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 77 AFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRA 156 (329)
T ss_pred cccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHH
Confidence 00 0 0011222334567899999999999999999999998643 346788887643 23557
Q ss_pred hhhccce--eEEecCCC--HHHHHHHHHHHHH----HhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhC-C
Q 019145 201 PLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLFG-S 266 (345)
Q Consensus 201 ~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~----~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~~-~ 266 (345)
.|..|+. .+.++|+. .+|+..++..++. +.+ ..+++++++.|..+. .||+|.+.|.++.++..+. .
T Consensus 157 dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~ 236 (329)
T TIGR02974 157 DLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLE 236 (329)
T ss_pred HHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 7778875 57777776 4667666655443 333 358999999999987 9999999999999887763 4
Q ss_pred CCCHHH
Q 019145 267 SITSKD 272 (345)
Q Consensus 267 ~it~~~ 272 (345)
.++.++
T Consensus 237 ~~~~~~ 242 (329)
T TIGR02974 237 EAPIDE 242 (329)
T ss_pred ccchhh
Confidence 455554
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-14 Score=129.54 Aligned_cols=265 Identities=17% Similarity=0.161 Sum_probs=166.2
Q ss_pred ccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhc----CCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 65 HQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 65 g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
+++.....|...++. +....++++|-||||||++++.+.+.+. ......+.++++|+-.-.+...+...+-
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~ 479 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIW 479 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHH
Confidence 444444555444433 2223479999999999999999999875 2345678999999977666555544443
Q ss_pred HHHHh-hhcCCC--------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---CceEEEEecCcccc----cc
Q 019145 136 TFAAV-AVGSGQ--------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNYISR----II 199 (345)
Q Consensus 136 ~~~~~-~~~~~~--------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---~~~~ii~~~n~~~~----l~ 199 (345)
..... ...... ........+..||+|||+|.|-...|+.|.++++++. ....+|.++|..+. +.
T Consensus 480 ~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~ 559 (767)
T KOG1514|consen 480 EALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLM 559 (767)
T ss_pred HhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhc
Confidence 21111 000000 0011233456799999999998888888888888765 35566777776653 23
Q ss_pred hhhhccce--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCC--------
Q 019145 200 EPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS---QGDLRRAITYLQGAARLFGS-------- 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s---~g~~r~~~~~l~~~~~~~~~-------- 266 (345)
..+.+|.. .+.|.|++.+++.+++..+++.- ..+++++++.+++.. .||.|+++..++.++..++.
T Consensus 560 nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~ 638 (767)
T KOG1514|consen 560 NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLA 638 (767)
T ss_pred cchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccccccc
Confidence 34445544 89999999999999999888654 347899999998754 89999999999999877632
Q ss_pred ---CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 ---SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ---~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.|+..+|.+++...........+.-+.--..--...+...+...|. ....+..+..++..++..
T Consensus 639 ~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl~ai~~e~~~~g~-~e~~~~~v~~~~~~i~~~ 705 (767)
T KOG1514|consen 639 VSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFLTAIVAETEGTGL-EEATLDEVYSEVVTICRK 705 (767)
T ss_pred ccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHh
Confidence 2566777776655444333333221111111111122233333332 335555566666666543
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=134.18 Aligned_cols=203 Identities=21% Similarity=0.217 Sum_probs=140.0
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|.++.|.......+...+.. .....+||+||||||||++|++++++. +.+|+.+..++
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~ 311 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSE 311 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHH
Confidence 34777888877777666655522 122348999999999999999999987 77888888764
Q ss_pred ccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHh--hcCC
Q 019145 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME--TYSK 184 (345)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le--~~~~ 184 (345)
..+ ...++..+...... ...+|++||+|.+. ....+.++..++ +...
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~--------------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKL--------------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcC--------------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 322 23344444443322 34599999999883 245667777775 3345
Q ss_pred ceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCCHHH-HHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRR-AITYLQG 259 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~l~~~s~g~~r~-~~~~l~~ 259 (345)
++.+|.+||.++.+++++.+ |++ .+.|++|+.++..++++.........+ ++-.++.+++.+.|.... +...++.
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 56678889999999999999 887 899999999999999999987666543 445577788766553333 3333333
Q ss_pred HHHHh-----CCCCCHHHHHHhhCC
Q 019145 260 AARLF-----GSSITSKDLISVSGV 279 (345)
Q Consensus 260 ~~~~~-----~~~it~~~v~~~~~~ 279 (345)
++..+ ...||.++..+++..
T Consensus 458 a~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 458 AALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHh
Confidence 33322 235777777666554
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=125.42 Aligned_cols=191 Identities=24% Similarity=0.249 Sum_probs=130.5
Q ss_pred CCCCCccccccHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
...+|+|+-|-+.+++.+.+.+.- ....++||+||||||||.+|++++++. +.+|+.+..
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~ 160 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSV 160 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc------CCCcceeec
Confidence 345788998999999988887632 123459999999999999999999998 677777777
Q ss_pred CCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-------HH----HHHHHHHHhhc----CC
Q 019145 122 SDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DA----QNALRRTMETY----SK 184 (345)
Q Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-------~~----~~~l~~~le~~----~~ 184 (345)
+...+.- .-...+......+. .=.+.+|+|||++.+-. +. -+.+....+.. ..
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAs----------Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~ 230 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLAS----------KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSE 230 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhh----------hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCc
Confidence 6543311 11111111111110 11345999999998731 11 12233233321 12
Q ss_pred ceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
.+.+..+||.+..++.++.+|+. .++++-|+..+..++++-+.+.+.++ ++-.+..++..+.|.-..-+.+++..|.+
T Consensus 231 rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred eEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 34444568999999999999976 89999999999999999999888775 34448888998888776666666666655
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-14 Score=115.94 Aligned_cols=191 Identities=21% Similarity=0.268 Sum_probs=134.5
Q ss_pred hhhhCCCCCccccccHHHHHHHHH----HHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTN----TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~----~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
...+.|..+++++|-+..++.|.+ .+......|+||+|+.|||||++++++.+++... +..++++...+....
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l 94 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDL 94 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccH
Confidence 456778899999997777655544 4455566679999999999999999999998443 467888877665555
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHHHHh----hcCCceEEEEecCcccccch--
Q 019145 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRIIE-- 200 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~~le----~~~~~~~ii~~~n~~~~l~~-- 200 (345)
..+.+.+.. . ..+-||++||+..=. ......|..++| ..|.++.+.+|+|..+.+..
T Consensus 95 ~~l~~~l~~---~-------------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 95 PELLDLLRD---R-------------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred HHHHHHHhc---C-------------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhh
Confidence 444444332 1 133499999975332 233455555654 56788888888876544332
Q ss_pred ---------------------hhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-----HHHHHHHhcCCCHHHH
Q 019145 201 ---------------------PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-----ALSTLSSISQGDLRRA 253 (345)
Q Consensus 201 ---------------------~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-----~~~~l~~~s~g~~r~~ 253 (345)
+|..||. .+.|.+++.++-.+++...+++.|+.++++ +++.-..+.+.+.|.|
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA 238 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTA 238 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 2344665 789999999999999999999999999853 3444445556688887
Q ss_pred HHHHHHHH
Q 019145 254 ITYLQGAA 261 (345)
Q Consensus 254 ~~~l~~~~ 261 (345)
..-++.++
T Consensus 239 ~QF~~~l~ 246 (249)
T PF05673_consen 239 RQFIDDLA 246 (249)
T ss_pred HHHHHHHh
Confidence 76665543
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=119.14 Aligned_cols=121 Identities=25% Similarity=0.321 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC-------------cccccchhhhccceeEEecCCCHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN-------------YISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n-------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 222 (345)
++++||||+|+|.-+.+..|.+.+|.+- ...+||++| .++.+++.+++|.-++...+++.++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 4699999999999999999999999854 345677765 34568899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHH---HHhC-CCCCHHHHHHhh
Q 019145 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAA---RLFG-SSITSKDLISVS 277 (345)
Q Consensus 223 l~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~---~~~~-~~it~~~v~~~~ 277 (345)
++.+++.+++.++++++..+++.. ...+|.++..|.-+. ...| +.|..++|+++.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999999865 678999999986333 3334 468888888764
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=144.95 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch----------------------------------
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---------------------------------- 127 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------- 127 (345)
+..+||+||||||||.+|+++|.+. ..+++.+++++-...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 3459999999999999999999998 566666655332100
Q ss_pred -------------H--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-----HHHHHHHHHhhc-----
Q 019145 128 -------------N--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----AQNALRRTMETY----- 182 (345)
Q Consensus 128 -------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-----~~~~l~~~le~~----- 182 (345)
. .++..++.+.. ..+.||+|||+|.+... ..+.|+..++..
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk--------------~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKA--------------MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHH--------------CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCC
Confidence 0 01111222111 23469999999999643 256677777632
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHhcCC-CHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE--ALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~~l~~~s~g-~~r~~~~~ 256 (345)
...+.+|.+||.++.++|++++ |++ .+.+..|+..+..+++.......|+.++++ .++.+++.+.| ..+++.+.
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 3457788889999999999998 776 788888888777777765555556666543 36888888755 33444444
Q ss_pred HHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 257 LQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 257 l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
+..++..+ + ..|+.+++..++.
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 44444333 3 4488888877654
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=141.91 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=146.7
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc-
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD- 124 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~- 124 (345)
.++++-+...++.++|++..+..+..++.....+|++|+||||||||++++.++..+... ...+..++.++....
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 455566777899999999999999999999888999999999999999999999987422 223567777775321
Q ss_pred ---cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEecC
Q 019145 125 ---RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
.......+.+......... ....||||||+|.+.. +..+.|...+.. +...+|.+|+
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt 315 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQE----------NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATT 315 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHHh----------cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCC
Confidence 1112222333332222111 1235999999997742 345667777764 4566777776
Q ss_pred cc-----cccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHHH
Q 019145 194 YI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYLQ 258 (345)
Q Consensus 194 ~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~g------~~r~~~~~l~ 258 (345)
.. ....+.+.+||..+.+.+++.++...+++.... ..++.++++++..+++.+.+ -+++++..++
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 43 246789999999999999999998888876543 35677999999999998865 3788999998
Q ss_pred HHHHHh
Q 019145 259 GAARLF 264 (345)
Q Consensus 259 ~~~~~~ 264 (345)
.++...
T Consensus 396 ~a~a~~ 401 (821)
T CHL00095 396 EAGSRV 401 (821)
T ss_pred HHHHHH
Confidence 877543
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-14 Score=123.20 Aligned_cols=221 Identities=20% Similarity=0.158 Sum_probs=137.3
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC-CceeeeecCCc-----------
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-SRVLELNASDD----------- 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~~~~~~~~----------- 124 (345)
...|.+++||++.+..|...+......+++|+|++|||||++++.+++.+....... .+|. .++...
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~ 91 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAI 91 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhh
Confidence 348889999999999999998888888899999999999999999988874322111 1111 111000
Q ss_pred ---------------------cchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 125 ---------------------RGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 125 ---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
.+.+.+...+.-......+.. ..++....+..++|++||++.++...+..|++.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 000000000000000000000 0122233456789999999999999999999999762
Q ss_pred C-------------CceEEEEecCccc-ccchhhhccce-eEEecCCC-HHHHHHHHHHHHH------------------
Q 019145 183 S-------------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN------------------ 228 (345)
Q Consensus 183 ~-------------~~~~ii~~~n~~~-~l~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~------------------ 228 (345)
. ..+.+|.+.|... .+.+.+..|+. .+.+..++ .++..+++++...
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEE 251 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcccccc
Confidence 1 2223333345433 58889999988 67777776 3555555544211
Q ss_pred -----------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHH---hC-CCCCHHHHHHhhC
Q 019145 229 -----------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARL---FG-SSITSKDLISVSG 278 (345)
Q Consensus 229 -----------~~~~~i~~~~~~~l~~~s---~-g~~r~~~~~l~~~~~~---~~-~~it~~~v~~~~~ 278 (345)
-..+.++++.++++++.+ + -.+|..+..+..+... .| ..|+.+||..+..
T Consensus 252 ~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~ 320 (350)
T CHL00081 252 LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVIT 320 (350)
T ss_pred CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 124668899988887765 2 2578877766544433 34 4599999988754
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=139.73 Aligned_cols=192 Identities=23% Similarity=0.296 Sum_probs=128.9
Q ss_pred ccccccHHHHHHHHHHHHcC--------CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETA--------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+.++||+++++.+.+.+... ++ .+++|+||+|||||++|+++++.+ ...++.++++.......+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcccHH
Confidence 46789999999988888642 12 247999999999999999999998 4566777765432222221
Q ss_pred HHHHHHHHhhhcC---CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-
Q 019145 132 TKIKTFAAVAVGS---GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS- 196 (345)
Q Consensus 132 ~~~~~~~~~~~~~---~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~- 196 (345)
..+...... .+. +.........+++||++||++.++++.++.|++++++.. .++.+|+|+|...
T Consensus 528 ~lig~~~gy-vg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~ 606 (731)
T TIGR02639 528 RLIGAPPGY-VGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS 606 (731)
T ss_pred HHhcCCCCC-cccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence 111110000 000 000000112356899999999999999999999998641 3566888886421
Q ss_pred ------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHHHHHHH
Q 019145 197 ------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAEALSTL 242 (345)
Q Consensus 197 ------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i~~~~~~~l 242 (345)
.+.|.+..|++ ++.|.|++.+++..++...++. .| +.+++++++.|
T Consensus 607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~L 686 (731)
T TIGR02639 607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYL 686 (731)
T ss_pred hhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHH
Confidence 14677888886 8999999999999999887652 22 56899999999
Q ss_pred HHhc---CCCHHHHHHHHHH
Q 019145 243 SSIS---QGDLRRAITYLQG 259 (345)
Q Consensus 243 ~~~s---~g~~r~~~~~l~~ 259 (345)
++.+ ....|.+-+.++.
T Consensus 687 a~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 687 AEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHhCCCcccCchHHHHHHHH
Confidence 9864 2234544444443
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=133.39 Aligned_cols=214 Identities=17% Similarity=0.142 Sum_probs=143.9
Q ss_pred CCCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-H
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-K 133 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 133 (345)
..+|++++|....+..+...+.. ....+++|+|++||||+++|+++++.. .....+|+.+||..... +.+.. .
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s---~r~~~pfv~vnc~~~~~-~~~~~el 396 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES---ERAAGPYIAVNCQLYPD-EALAEEF 396 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC---CccCCCeEEEECCCCCh-HHHHHHh
Confidence 34789999988777766665543 233459999999999999999998874 22356899999987432 22211 1
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~------- 195 (345)
+... . ........+....+..+.|+|||++.++...|..|++++++.. ..+++|++++..
T Consensus 397 fg~~-~-~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~ 474 (638)
T PRK11388 397 LGSD-R-TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQ 474 (638)
T ss_pred cCCC-C-cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhc
Confidence 1110 0 0000001112223566799999999999999999999998642 146788877643
Q ss_pred cccchhhhccce--eEEecCCCH--HHHHHHHHHHHHH----h--CCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 196 SRIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----E--GLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 196 ~~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~--~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
..+.+.+..|.. .+.++|+.+ +|+..++..++.+ . .+.+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 475 ~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 475 NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 234455556655 566777754 4666666555443 2 2468999999999987 999999999999988665
Q ss_pred -CCCCCHHHHHHh
Q 019145 265 -GSSITSKDLISV 276 (345)
Q Consensus 265 -~~~it~~~v~~~ 276 (345)
+..|+.+++...
T Consensus 555 ~~~~i~~~~lp~~ 567 (638)
T PRK11388 555 DNGRIRLSDLPEH 567 (638)
T ss_pred CCCeecHHHCchh
Confidence 446887776543
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=112.82 Aligned_cols=109 Identities=28% Similarity=0.341 Sum_probs=81.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (345)
++|+||||||||++++.+++.+ +.+++.+++.... ....+...+....... .+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-------------KPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-------------TSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccc-------------ccee
Confidence 6899999999999999999998 6788888886543 1222333333322111 2469
Q ss_pred EEEcCCCCCCHHH-----------HHHHHHHHhhcCC---ceEEEEecCcccccchhhh-ccce-eEEec
Q 019145 159 IILDEADSMTEDA-----------QNALRRTMETYSK---VTRFFFICNYISRIIEPLA-SRCA-KFRFK 212 (345)
Q Consensus 159 liiDE~~~l~~~~-----------~~~l~~~le~~~~---~~~ii~~~n~~~~l~~~l~-~r~~-~i~~~ 212 (345)
|+|||+|.+.... .+.|+..++.... .+.+|++||..+.+++++. +||. .++|+
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 9999999997654 7788888887665 4788999999999999999 8988 55553
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=117.79 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=115.9
Q ss_pred CCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC--
Q 019145 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-- 123 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-- 123 (345)
.++++-|-++.++.+.+.+-- ..+..+|+|||||||||.+|+++|.+. +..|..+.++.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT------~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT------NATFLKLAGPQLV 242 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc------cchHHHhcchHHH
Confidence 567888888888888777622 233459999999999999999999987 44444444332
Q ss_pred ----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc-----C
Q 019145 124 ----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----S 183 (345)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~-----~ 183 (345)
..+...++..+.-... ..+.+|||||+|.+. .+++..++.++... .
T Consensus 243 QMfIGdGAkLVRDAFaLAKE--------------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKE--------------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred hhhhcchHHHHHHHHHHhhc--------------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 1233333333332221 234699999999873 34566666666543 2
Q ss_pred CceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ 247 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~ 247 (345)
..+.+|.++|..+-++|++.+.+. .++|+.|+.+-...+++-..++.++. ++-..+.+++.+.
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTd 374 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTD 374 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhccc
Confidence 467889999999999999988554 79999999888888887776665543 2333777877764
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=128.84 Aligned_cols=214 Identities=20% Similarity=0.219 Sum_probs=142.9
Q ss_pred CCCCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
....|++++|....+..+...++. ....+++|+|++||||+++|+++.... .....+|+.++|.... .+.+...
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s---~r~~~pfv~inca~~~-~~~~e~e 274 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS---PRGKKPFLALNCASIP-DDVVESE 274 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC---CCCCCCeEEeccccCC-HHHHHHH
Confidence 456899999988877666665543 233459999999999999999987653 2235688999997643 2222211
Q ss_pred HHHHHHhhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc----
Q 019145 134 IKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS---- 196 (345)
Q Consensus 134 ~~~~~~~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~---- 196 (345)
+-......... ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++..-
T Consensus 275 lFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~ 354 (520)
T PRK10820 275 LFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 354 (520)
T ss_pred hcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 11100000000 001111223456799999999999999999999998632 2457888775431
Q ss_pred ---ccchhhhccce--eEEecCCCH--HHHHHH----HHHHHHHhCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 019145 197 ---RIIEPLASRCA--KFRFKPLSE--EVMSSR----VLHICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAA 261 (345)
Q Consensus 197 ---~l~~~l~~r~~--~i~~~~~~~--~~~~~~----l~~~~~~~~~---~i~~~~~~~l~~~-s~g~~r~~~~~l~~~~ 261 (345)
.+.+.+..|.. .+.++|+.+ +++..+ +...+.+.|. .+++++++.|..+ ..||+|.+.|.+..++
T Consensus 355 ~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 355 QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 24466777765 577777754 455544 4444445543 5899999999988 6999999999999888
Q ss_pred HHh-CCCCCHHHH
Q 019145 262 RLF-GSSITSKDL 273 (345)
Q Consensus 262 ~~~-~~~it~~~v 273 (345)
..+ +..|+.+++
T Consensus 435 ~~~~~~~i~~~~~ 447 (520)
T PRK10820 435 TQLEGYELRPQDI 447 (520)
T ss_pred HhCCCCcccHHHc
Confidence 765 446888875
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=124.43 Aligned_cols=225 Identities=21% Similarity=0.222 Sum_probs=132.7
Q ss_pred CCccccccHHHHHHHHHHHH---------cCC---CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 59 QVKDVAHQEEVVRVLTNTLE---------TAN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~---------~~~---~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
.|+++.|.+.++++|++.+- .+. -..+||||||||||+.+|+++|.+. +..|+.++.++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVS 204 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHH
Confidence 78899999999999988762 222 2238999999999999999999998 67788887776432
Q ss_pred h--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-------HH-----HHHHHHHHh--hcCCceEEEE
Q 019145 127 I--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DA-----QNALRRTME--TYSKVTRFFF 190 (345)
Q Consensus 127 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-------~~-----~~~l~~~le--~~~~~~~ii~ 190 (345)
. ..-..++.++...+. .....||||||+|.+-. +. .+.|.+.-. .....+.++-
T Consensus 205 KWmGESEkLVknLFemAR----------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMAR----------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred HHhccHHHHHHHHHHHHH----------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 1 111222333222221 12456999999998721 11 123333221 2223455566
Q ss_pred ecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--CCC
Q 019145 191 ICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSS 267 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~--~~~ 267 (345)
+||-+..++.++++|++ .|.++.|...-....++-..-.--..+++..+..|++.+.|.-..-+..+-+=+... .+.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 78999999999999998 677766665555544433332222347888899999887654322222211111110 011
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHH
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (345)
-+.-+..++.+.+....+..++.-|..++..+
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga 386 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGA 386 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcch
Confidence 12223344444444444555555566665544
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-13 Score=138.08 Aligned_cols=194 Identities=24% Similarity=0.308 Sum_probs=135.7
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++||+.++..+...+.... ...++|+||+|||||++|+++++.+++. ...++.++++.......+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccchHH
Confidence 468899999999988886521 1237999999999999999999998543 3467777776533322221
Q ss_pred HHHHHHHHhhhcCC------CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGSG------QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~~------~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+ ..+++.. .........++.+|++||++.++++.++.|++++++.. .++.+|+|||.
T Consensus 642 ~l~----g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred Hhc----CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 111 0000000 00000112356799999999999999999999998752 45678999875
Q ss_pred cc-------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhC--CCCCHHHH
Q 019145 195 IS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEG--LNLDAEAL 239 (345)
Q Consensus 195 ~~-------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~~ 239 (345)
.. .+.+.+..|++ ++.|.|++.+++..++..... ..+ +.++++++
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~ 797 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 797 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHH
Confidence 21 13456777885 899999999999888877554 222 56899999
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHH
Q 019145 240 STLSSIS---QGDLRRAITYLQGAA 261 (345)
Q Consensus 240 ~~l~~~s---~g~~r~~~~~l~~~~ 261 (345)
+.|++.. .++.|.+.+.++...
T Consensus 798 ~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 798 DFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999874 578888888887665
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-14 Score=124.62 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=141.3
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
....+.+++|.....+.+.+.++.-.+ .+++++|++||||+.+|+.++..- ......+|+.+||......-...+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s--~r~~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS--ARRAEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh--hcccCCCEEEEEHHHhCcCHHHHHH
Confidence 344677999998888888888877332 349999999999999999999432 2215789999999874433222222
Q ss_pred HHHHHHhhhc-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh-----------cCCceEEEEecCc--ccccc
Q 019145 134 IKTFAAVAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNY--ISRII 199 (345)
Q Consensus 134 ~~~~~~~~~~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~-----------~~~~~~ii~~~n~--~~~l~ 199 (345)
+.-......+ ...+.+....++.+.+++||++.++...|..|++++++ .+.++++|++|+. ...+.
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred hccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 2111111111 11233334456778999999999999999999999996 3356778887743 34455
Q ss_pred h--hhhccce--eEEecCCCH--HHHHH----HHHHHHHHhCCC---CCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 200 E--PLASRCA--KFRFKPLSE--EVMSS----RVLHICNEEGLN---LDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 200 ~--~l~~r~~--~i~~~~~~~--~~~~~----~l~~~~~~~~~~---i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
. .+.+|+. .++++|+.. +|+.. ++...+.+.+.+ .+++++..+..+. .||+|.+.|.++.++..+
T Consensus 231 ~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 231 AGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 5 6666555 677777654 44444 444455555554 3457788887764 999999999999998776
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-13 Score=125.99 Aligned_cols=203 Identities=20% Similarity=0.207 Sum_probs=138.2
Q ss_pred CCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+.+++|+...++.+.+.+..- ...+++|+|++||||+++|+++++.. ...+.+++.++|..... ..+...+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s---~r~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS---PRADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---CcCCCCeEEEEcccCCh-HHHHHHhcC
Confidence 5678999988888777777653 33459999999999999999999874 22356899999986432 222211100
Q ss_pred HHHhhh-cC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~~-~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
...... +. ....+....+..+.|||||++.++...|..|++++++.. .++++|++++.. .
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 000000 00 011122234566799999999999999999999997632 256888888653 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
.+...+..|+. .+.++|+.. +++..++..++ .+.| ..+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 341 ~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 341 RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 35566666765 466777653 55655544443 3333 569999999999876 899999999999988766
Q ss_pred C
Q 019145 265 G 265 (345)
Q Consensus 265 ~ 265 (345)
.
T Consensus 421 ~ 421 (509)
T PRK05022 421 R 421 (509)
T ss_pred C
Confidence 3
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-14 Score=138.14 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=124.1
Q ss_pred ccccccHHHHHHHHHHHHcC-------CC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETA-------NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+.++||++++..+...+... .. ..++|+||+|||||++|+++++.+++. ...++.++.+.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~---~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS---EDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC---ccceEEEEchhccccccHH
Confidence 46789999999998888632 11 237999999999999999999999764 2456667665432222221
Q ss_pred HHHHHHHHhhhcCC-C-----CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGSG-Q-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~~-~-----~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+. .+++.. . ........+++||++||++.++++.++.|++++++.. .++.+|+|+|.
T Consensus 586 ~l~g----~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLIG----SPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HhcC----CCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1110 000000 0 0000112456899999999999999999999999742 56788888763
Q ss_pred ccc-------------------------------------cchhhhccc-eeEEecCCCHHHHHHHHHHHHHH-------
Q 019145 195 ISR-------------------------------------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE------- 229 (345)
Q Consensus 195 ~~~-------------------------------------l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~------- 229 (345)
... +.|.+.+|+ .++.|.|++.+++.+++...+..
T Consensus 662 g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~ 741 (821)
T CHL00095 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE 741 (821)
T ss_pred chHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 210 235678888 58999999999999998876653
Q ss_pred hC--CCCCHHHHHHHHHhc
Q 019145 230 EG--LNLDAEALSTLSSIS 246 (345)
Q Consensus 230 ~~--~~i~~~~~~~l~~~s 246 (345)
.| +.+++++.+.|++.+
T Consensus 742 ~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 742 QGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred CCcEEEECHHHHHHHHHhc
Confidence 23 458999999999864
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=135.71 Aligned_cols=195 Identities=24% Similarity=0.306 Sum_probs=130.4
Q ss_pred CCccccccHHHHHHHHHHHHcC-------CC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETA-------NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
-...++||+.++..+...+... .. ..++|+||+|||||++|+++++.+++. ...++.++++.......
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhhhh
Confidence 3457889999998888888642 11 247999999999999999999988543 23567777654322111
Q ss_pred HHHHHHHHHHhhhcCC-CC-----CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEec
Q 019145 130 VRTKIKTFAAVAVGSG-QR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (345)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~ 192 (345)
....+ ..+++.. .. .......++.+|++||++.+++..++.|++++++.. .++.+|+||
T Consensus 643 ~~~Li----G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 VSRLV----GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred HHHHh----CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11111 0000000 00 000112345799999999999999999999998642 345688888
Q ss_pred Cccc-------------------------ccchhhhccc-eeEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHH
Q 019145 193 NYIS-------------------------RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAE 237 (345)
Q Consensus 193 n~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i~~~ 237 (345)
|... .+.|++.+|+ .++.|.|++.+++..++...+.. .+ +.++++
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~ 798 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE 798 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHH
Confidence 7521 2456888899 58999999999999988876653 23 457999
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHH
Q 019145 238 ALSTLSSISQ---GDLRRAITYLQGA 260 (345)
Q Consensus 238 ~~~~l~~~s~---g~~r~~~~~l~~~ 260 (345)
+++.|++.+. ...|.+-+.++..
T Consensus 799 al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 799 ALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHcCCCccCChHHHHHHHHHH
Confidence 9999998752 1355555555443
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=119.41 Aligned_cols=220 Identities=16% Similarity=0.139 Sum_probs=132.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-------CCCCC--CCce-ee----------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GPELY--KSRV-LE---------- 118 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-------~~~~~--~~~~-~~---------- 118 (345)
.|..++||++++..+.-.+-.....+++|.|++|+|||+++++++..+. ++... ..+. +.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 5778999999998887777676677899999999999999999998762 11000 0000 00
Q ss_pred ------------eecCCccchHHHHHHHHHHHHhhhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--
Q 019145 119 ------------LNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (345)
Q Consensus 119 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-- 183 (345)
.+.+.....+.+...+.-......+. ...++....+..+++++||++.++...+..|++.+++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 00000000000000000000000000 011222233566899999999999999999999997642
Q ss_pred -----------CceEEEEecCccc-ccchhhhccce-eEEecCCCH-HHHHHHHHHHHH---------------------
Q 019145 184 -----------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN--------------------- 228 (345)
Q Consensus 184 -----------~~~~ii~~~n~~~-~l~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~~~--------------------- 228 (345)
..+.+|.+.|... .+.+++.+|+. .+.+..++. ++..+++.....
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 2233344445433 58889999998 566766654 555555555211
Q ss_pred --------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 229 --------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 229 --------~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
-..+.+++++++++++.+ +. .+|..+..+..+..++ | ..|+.+||..+..
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 134568888888887654 33 4688777765544433 4 4599999988654
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=125.17 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=151.4
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
.....+|++++|....+..+.+..+... ...+|+.|++||||..+|+++++. +...+.+|+.+||.. .+...+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~---S~R~~~PFIaiNCaA-iPe~LlE 313 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNL---SPRANGPFIAINCAA-IPETLLE 313 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhc---CcccCCCeEEEeccc-CCHHHHH
Confidence 4566699999998777766666665533 334999999999999999999875 456688999999987 3444444
Q ss_pred HHHHHHHHhhhcCCC---CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-
Q 019145 132 TKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS- 196 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~---~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~- 196 (345)
+.+-.+...+..+.. +++....+..+-||+||+..++...|..|++++++.. -.+++|.+||..-
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~ 393 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE 393 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH
Confidence 443333222222222 3344445778899999999999999999999998532 4678899987542
Q ss_pred ------ccchhhhccceeE--EecCCC--HHHHHHHHHHHHH----HhC--CC-CCHHHHHHHHHhc-CCCHHHHHHHHH
Q 019145 197 ------RIIEPLASRCAKF--RFKPLS--EEVMSSRVLHICN----EEG--LN-LDAEALSTLSSIS-QGDLRRAITYLQ 258 (345)
Q Consensus 197 ------~l~~~l~~r~~~i--~~~~~~--~~~~~~~l~~~~~----~~~--~~-i~~~~~~~l~~~s-~g~~r~~~~~l~ 258 (345)
.+-..|-.|..++ .++|+- .+|+......+.. ..+ +. ++++++..+.++- .||+|.+-|.++
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviE 473 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIE 473 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3455666777754 444442 2555544444443 333 22 8999999998874 899999999999
Q ss_pred HHHHHhC--CCCCHHHHH
Q 019145 259 GAARLFG--SSITSKDLI 274 (345)
Q Consensus 259 ~~~~~~~--~~it~~~v~ 274 (345)
.+..+.+ ..|+.+++-
T Consensus 474 R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 474 RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHhccCCcceeehhhcc
Confidence 9986543 336666554
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=119.72 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=136.7
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
++--..++.++-|-+..++.+++.+.-. .+..++|||+||||||.+|+++|++. +..|+.+
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------SATFlRv 250 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------SATFLRV 250 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------chhhhhh
Confidence 3333447888989999999999888542 23459999999999999999999987 5566655
Q ss_pred ecCC------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc
Q 019145 120 NASD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (345)
Q Consensus 120 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~ 182 (345)
-+++ ..+...+++.+.-....+ ..|+||||+|.+. .+.+..++.+++..
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~a--------------pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl 316 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHA--------------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 316 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcC--------------CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc
Confidence 5432 123444555555443333 3599999999873 24566666776643
Q ss_pred -----CCceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHH----HhcCCC
Q 019145 183 -----SKVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLS----SISQGD 249 (345)
Q Consensus 183 -----~~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~----~~s~g~ 249 (345)
...+.+|++||....++|++.+-.. .+.|+.|+....+.+++-... +..+.+++ ++.++ +.||.|
T Consensus 317 dGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSGAd 394 (440)
T KOG0726|consen 317 DGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSGAD 394 (440)
T ss_pred cCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhccccccccc
Confidence 3578999999999999999998544 799999988777776643322 23343333 44444 456778
Q ss_pred HHHHHHHHHHHHHHh-CCCCCHHHHHHh
Q 019145 250 LRRAITYLQGAARLF-GSSITSKDLISV 276 (345)
Q Consensus 250 ~r~~~~~l~~~~~~~-~~~it~~~v~~~ 276 (345)
+.......-.++... ...++.+|...+
T Consensus 395 IkAictEaGllAlRerRm~vt~~DF~ka 422 (440)
T KOG0726|consen 395 IKAICTEAGLLALRERRMKVTMEDFKKA 422 (440)
T ss_pred HHHHHHHHhHHHHHHHHhhccHHHHHHH
Confidence 777666655555443 234777766554
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=135.61 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=126.1
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+++.|.+..++.+.+.+.. ..+.+++|+||||||||++++++++++ +..++.+++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecH
Confidence 345889999999999888887742 123459999999999999999999998 5667777764
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC--
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS-- 183 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~-- 183 (345)
... ....++..+..... ....+|+|||+|.+. ...++.|+..++...
T Consensus 247 ~i~~~~~g~~~~~l~~lf~~a~~--------------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 247 EIMSKYYGESEERLREIFKEAEE--------------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred HHhcccccHHHHHHHHHHHHHHh--------------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 321 11223333333221 123599999998874 235667888887543
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYL 257 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~s~g~~r~~~~~l 257 (345)
..+.+|.++|.+..+++++++ |+. .+.|+.|+.++..++++.... +..+. +..+..+++.+.|....-+..+
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 345566688999999999887 565 789999999999999986554 34443 3447888888877655444443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-14 Score=126.93 Aligned_cols=173 Identities=21% Similarity=0.234 Sum_probs=111.1
Q ss_pred cccccHHHHHHHHHHHHc-------C---------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 62 DVAHQEEVVRVLTNTLET-------A---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-------~---------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.++||+++++.+...+.. + ...+++|+||||||||++|+++++.+ +.+++.+++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------~~pf~~id~~~l~ 145 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------DVPFAIADATTLT 145 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------CCCceecchhhcc
Confidence 478999999888665521 1 23569999999999999999999988 5667766664321
Q ss_pred ch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC----
Q 019145 126 GI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS---- 183 (345)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~---- 183 (345)
.. ......+......... ......+.+|+|||+|.++. ..|+.|+++++...
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~------~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADY------DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred cCCcccchHHHHHHHHHHhccc------cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 10 1122222222111100 01123557999999999975 37899999998421
Q ss_pred ---------CceEEEEecCc------------------------------c--------c--------------ccchhh
Q 019145 184 ---------KVTRFFFICNY------------------------------I--------S--------------RIIEPL 202 (345)
Q Consensus 184 ---------~~~~ii~~~n~------------------------------~--------~--------------~l~~~l 202 (345)
....+|.|+|. . . .+.|++
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 01223333221 0 0 035667
Q ss_pred hccce-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 019145 203 ASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (345)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~s 246 (345)
..|++ ++.|.+++.+++..++.. .+...++ .+++++++.|++.+
T Consensus 300 lgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 300 IGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred hCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 77776 789999999999998872 2233454 48999999999874
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=139.41 Aligned_cols=207 Identities=28% Similarity=0.423 Sum_probs=158.7
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcC--------------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA--------------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~--------------~~~--~lll~G~~G~GKT~la~~la~~l~~~~~ 111 (345)
...|.++|+|....++.|.......+.+|+... ... .++++||||+|||+.++..++++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 467999999999999999877777777777543 001 25999999999999999999998
Q ss_pred CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC----CCCCCCCCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCC
Q 019145 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCPPYKIIILDEADSMTE---DAQNALRRTMETYSK 184 (345)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~ 184 (345)
++.+++.|+++.++...+.+.+..+.....-.... ..........||++||+|.+.. ..+..+-.++.. .
T Consensus 382 -g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s 458 (871)
T KOG1968|consen 382 -GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--S 458 (871)
T ss_pred -ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHh--c
Confidence 88999999999887776666555433221110000 0001123345999999999876 445566666663 3
Q ss_pred ceEEEEecCcccccc-hhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRII-EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~-~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
...+|++||...... +.+.+-|-.++|..|+.+.+...+..+|..+++.++++.++.+++.++||+|..++.++.+..
T Consensus 459 ~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 456888888776544 455566788999999999999999999999999999999999999999999999999998853
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-15 Score=129.75 Aligned_cols=181 Identities=11% Similarity=0.144 Sum_probs=117.8
Q ss_pred CcccccccccCCCCCCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCcccccc-HHHHHHHHHHH
Q 019145 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTL 77 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~-~~~~~~l~~~l 77 (345)
|+++|+++...+....+++.+++.. +.|...+.++..+++++ .+.+|+...+....|+...+. ...+..+..+-
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k---~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~ 97 (259)
T PRK09183 21 LISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR---MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLS 97 (259)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCcHhhcccccCCCCCHHHHHHHhcCC
Confidence 4566777888888899999999887 67888888888888888 788888877777788766653 55666665442
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
......+++|+|||||||||++.+++..+.. . +..+..++..+ +...+....... ....... ......+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~--G~~v~~~~~~~------l~~~l~~a~~~~-~~~~~~~-~~~~~~d 166 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVR-A--GIKVRFTTAAD------LLLQLSTAQRQG-RYKTTLQ-RGVMAPR 166 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEEeHHH------HHHHHHHHHHCC-cHHHHHH-HHhcCCC
Confidence 2334457999999999999999999888632 1 23333333221 110110000000 0000000 0012346
Q ss_pred EEEEcCCCCC--CHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 158 IIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 158 iliiDE~~~l--~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
+++|||++.. +....+.|+++++.......+|+++|.+
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 9999999875 4566678999998766556688888754
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=122.37 Aligned_cols=176 Identities=22% Similarity=0.222 Sum_probs=128.6
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+.-++..|+++.|.+.+.+.+.+.+-- .....+||+||||+|||.+++++|.+. ...|+.++
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iS 218 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNIS 218 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------cceEeecc
Confidence 456678899999988877766655421 122348999999999999999999998 67777777
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhh-
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMET- 181 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~- 181 (345)
++...+ ...++.++.-... ..+.|+||||+|.+-. -..+.|+++.--
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~--------------~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARS--------------LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHh--------------cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc
Confidence 754322 2233333333222 2456999999998721 123455555432
Q ss_pred --cCCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 019145 182 --YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (345)
Q Consensus 182 --~~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g 248 (345)
....+.+|-+||.+..+++++++|+. ++.++.|+.+....++.+.+...+..+.+..+..|++.+.|
T Consensus 285 s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 285 SAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred CCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 22456677788999999999999998 77799999999999999999988888899999999987754
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=128.44 Aligned_cols=217 Identities=21% Similarity=0.264 Sum_probs=140.1
Q ss_pred hhhhhhCC--CCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 50 PWVEKYRP--KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 50 ~~~~~~~p--~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+.+...+ ..|++++|+...+..+.+.+.. ....+++|+|++|||||++|+++++.. ...+.+++.++|....
T Consensus 363 ~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s---~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 363 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS---GRNNRRMVKMNCAAMP 439 (686)
T ss_pred HHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc---CCCCCCeEEEecccCC
Confidence 34444443 4678999998888777666553 333469999999999999999998865 2235688889987632
Q ss_pred chHHHHHHH-HHHHHhhhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEec
Q 019145 126 GINVVRTKI-KTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (345)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~ 192 (345)
. ..+...+ ........+. ....+....+..+.|+|||++.++.+.+..|+.++++.. .++++|+++
T Consensus 440 ~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 440 A-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 518 (686)
T ss_pred h-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeC
Confidence 2 2111111 1000000000 000111122345799999999999999999999997632 356788888
Q ss_pred Cccc-------ccchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHH
Q 019145 193 NYIS-------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRA 253 (345)
Q Consensus 193 n~~~-------~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~i~~~~~~~l~~~s-~g~~r~~ 253 (345)
+..- .+...+..|.. .+.++|+.+ +|+..++..++ .+.|. .+++++++.|..+. .||+|.+
T Consensus 519 ~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL 598 (686)
T PRK15429 519 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVREL 598 (686)
T ss_pred CCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHH
Confidence 6432 23444556655 566777653 56655555443 33343 37999999998875 8999999
Q ss_pred HHHHHHHHHHhC-CCCCH
Q 019145 254 ITYLQGAARLFG-SSITS 270 (345)
Q Consensus 254 ~~~l~~~~~~~~-~~it~ 270 (345)
.+.++.++..+. ..|+.
T Consensus 599 ~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 599 ENVIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHHHhCCCCcccc
Confidence 999999987653 34543
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=114.22 Aligned_cols=178 Identities=20% Similarity=0.252 Sum_probs=123.8
Q ss_pred CCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.++.++-|-++.+..+++.+... .+..+++|||||||||.+|+++|+.. +..|+.+-++..
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigsel 247 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSEL 247 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHH
Confidence 36678888888898888877542 33459999999999999999999987 777887766542
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh-----c
Q 019145 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----Y 182 (345)
Q Consensus 125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~-----~ 182 (345)
.+...+++.++... ..+..+||+||+|.+. .+++..++.++.. +
T Consensus 248 vqkyvgegarmvrelf~mar--------------tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMAR--------------TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhc--------------ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC
Confidence 12222333333221 1245699999999873 3567777777763 4
Q ss_pred CCceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcC----CCHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQ----GDLRRAI 254 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~----g~~r~~~ 254 (345)
.++..+++++|.++.+++++.+-.. .++|..|+.+-...+++-.++.. .++.+. .+.|+..|. .++|...
T Consensus 314 rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpnstgaeirsvc 391 (435)
T KOG0729|consen 314 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNSTGAEIRSVC 391 (435)
T ss_pred CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCCcchHHHHHH
Confidence 4688899999999999999998443 79999999888888876555433 333444 566666664 3455544
Q ss_pred HHH
Q 019145 255 TYL 257 (345)
Q Consensus 255 ~~l 257 (345)
...
T Consensus 392 tea 394 (435)
T KOG0729|consen 392 TEA 394 (435)
T ss_pred HHh
Confidence 433
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=108.31 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++++||||+|+|.-+.+.+|.+.+|+--.. .+++++| ++..++-.++.|.-++...|++.++++++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 469999999999999999999999874333 3455553 445688899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.-+|..+++.+++++++.+.... ...+|.+++.+..+...+ +..+..+||..+..
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 99999999999999999998875 578999999997766554 45578888877643
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-12 Score=116.43 Aligned_cols=204 Identities=16% Similarity=0.175 Sum_probs=119.5
Q ss_pred cccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH--HHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK--IKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 139 (345)
.++|++++++.+...+..+. +++|+||||||||++|+++++...... .|..+.+..... ..+... +.....
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp-~DLfG~l~i~~~~~ 93 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTP-EEVFGPLSIQALKD 93 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCc-HHhcCcHHHhhhhh
Confidence 57899999998888886665 799999999999999999999863211 222222221111 111010 011000
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---------CceEEE-EecCccc---ccchhhhccc
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---------KVTRFF-FICNYIS---RIIEPLASRC 206 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---------~~~~ii-~~~n~~~---~l~~~l~~r~ 206 (345)
.... .....+ ......++++||++.+++..++.|+..+++.. -..+++ +++|... ...+++..|+
T Consensus 94 ~g~f-~r~~~G-~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRF 171 (498)
T PRK13531 94 EGRY-QRLTSG-YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRM 171 (498)
T ss_pred cCch-hhhcCC-ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhE
Confidence 0000 000001 11123499999999999999999999996533 123344 4445322 1334888898
Q ss_pred e-eEEecCCC-HHHHHHHHHHHHH-----------------------HhCCCCCHHHHHHHHHhc------C----CCHH
Q 019145 207 A-KFRFKPLS-EEVMSSRVLHICN-----------------------EEGLNLDAEALSTLSSIS------Q----GDLR 251 (345)
Q Consensus 207 ~-~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~s------~----g~~r 251 (345)
. .+.+++++ .++..+++..... ...+.+++.+.++|.+.. . -++|
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 6 57777776 3555666654211 123557788877776543 1 3567
Q ss_pred HHHHHHH---HHHHHhC-CCCCHHHHH
Q 019145 252 RAITYLQ---GAARLFG-SSITSKDLI 274 (345)
Q Consensus 252 ~~~~~l~---~~~~~~~-~~it~~~v~ 274 (345)
..+..+. ..|.+.| ..|+.+||.
T Consensus 252 ~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 252 RWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 7666554 3333334 448888887
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=126.42 Aligned_cols=199 Identities=22% Similarity=0.204 Sum_probs=136.5
Q ss_pred CCCCccccccHHHHHHHHHHH---HcC--------C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTL---ETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l---~~~--------~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+|.|+.|.++.+..+.+.+ +.. . +..++|+||||||||.+|++++.++ +.+|+.+++++.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~F 219 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDF 219 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhh
Confidence 358899999988887776655 321 1 3359999999999999999999998 777777777652
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC-
Q 019145 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (345)
Q Consensus 125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~- 183 (345)
.+...++..+......+ +.|++|||+|...+ ...+.|+--++...
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~a--------------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNA--------------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccC--------------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 34556667766654433 25999999998843 35667777777655
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC----CHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG----DLRRAI 254 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g----~~r~~~ 254 (345)
..+.++..||.++-++++|.+ |++ .+..+.|+.....++++-.++. ..+++++ +..+++.+.| |+-.++
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence 345666678999999999987 555 7888889989999999866554 3333333 4557777654 444444
Q ss_pred HHHHHHHHHh-CCCCCHHHHHHhh
Q 019145 255 TYLQGAARLF-GSSITSKDLISVS 277 (345)
Q Consensus 255 ~~l~~~~~~~-~~~it~~~v~~~~ 277 (345)
|+-.-.+... ...|+..++.++.
T Consensus 364 NEAal~aar~n~~~i~~~~i~ea~ 387 (596)
T COG0465 364 NEAALLAARRNKKEITMRDIEEAI 387 (596)
T ss_pred HHHHHHHHHhcCeeEeccchHHHH
Confidence 4333332222 3447777776553
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=106.08 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=136.6
Q ss_pred HHHHHHHHHcCCCCc-EEEeCCCC-CCHHHHHHHHHHHhcCCC---CCCCceeeeecC-------CccchHHHHHHHHHH
Q 019145 70 VRVLTNTLETANCPH-MLFYGPPG-TGKTTTALAIAHQLFGPE---LYKSRVLELNAS-------DDRGINVVRTKIKTF 137 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~-lll~G~~G-~GKT~la~~la~~l~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 137 (345)
+..+.+.++.++..| .||.|..+ +||..++..+++.+.|.. +...++..+... ...+++.+++....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 356778888888887 59999997 999999999999887642 223345555432 235677787766665
Q ss_pred HHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHH
Q 019145 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217 (345)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~ 217 (345)
...+ ..++++|++|+++|.++....++|++.+|++|.++.+|++++.+..+.+.++|||..+.|..++..
T Consensus 82 ~~~p----------~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~ 151 (263)
T PRK06581 82 SKTS----------AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILH 151 (263)
T ss_pred hhCc----------ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHH
Confidence 4443 235788999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 218 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
...++....... ..+..-++.|.+...-|......-.+.+.
T Consensus 152 ~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 152 AYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDNLL 192 (263)
T ss_pred HHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888877655422 23455577777776666665555555444
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-13 Score=117.94 Aligned_cols=210 Identities=22% Similarity=0.215 Sum_probs=145.8
Q ss_pred CCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+.+++|+...+..+.+.+..- ...++||.|++||||..+|++|.+.- .....+|+.+||... +...+.+.+-.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S---~R~~kPfV~~NCAAl-PesLlESELFG 296 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS---PRRDKPFVKLNCAAL-PESLLESELFG 296 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC---cccCCCceeeecccc-chHHHHHHHhc
Confidence 5568999999888887777653 23349999999999999999998753 445779999999863 33333322222
Q ss_pred HHHhhh--cCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~~--~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
....+. .....++..-.++.+-+|+||+..++...|..|++.+.+.. -.+++|.+||.. .
T Consensus 297 HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 297 HEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred ccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 111111 12234455556788899999999999999999999998532 257889999753 2
Q ss_pred ccchhhhccceeEEecCCCH----HHH----HHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCAKFRFKPLSE----EVM----SSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~~~~~~----~~~----~~~l~~~~~~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
++-..+..|..++.+.-|+- +++ ..++++..+..|. .+++++++.+.++. .||+|.+.|.++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 34455666777655444432 333 3344444455554 58999999999986 899999999999999877
Q ss_pred CCCCCHHH
Q 019145 265 GSSITSKD 272 (345)
Q Consensus 265 ~~~it~~~ 272 (345)
++.++..+
T Consensus 457 ~~~~~~~d 464 (550)
T COG3604 457 GRLTRRGD 464 (550)
T ss_pred cccCCCcc
Confidence 55555444
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-13 Score=122.57 Aligned_cols=174 Identities=20% Similarity=0.181 Sum_probs=126.2
Q ss_pred CCCccccccHHHHHHHHHHHHcCC-------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETAN-------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD- 123 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~-------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~- 123 (345)
..|+++.|-.++++.+.+.+.-.. ..++|||||||||||.+|.+++... +.+|+.+.++.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPEl 737 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPEL 737 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHH
Confidence 467889898888888877775421 2349999999999999999999987 77888877654
Q ss_pred -----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC--Cc
Q 019145 124 -----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KV 185 (345)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~--~~ 185 (345)
..+...++..+...... ++.|+|+||+|.+.+ .+.+.|+.-++... ..
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a--------------~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSA--------------KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhcc--------------CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 23345566666664433 456999999999843 46778888877433 34
Q ss_pred eEEEEecCcccccchhhhcc--ce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 019145 186 TRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~r--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~ 252 (345)
+.++.+|.+++.+++++++- .+ .+.++.|+..+..++++.......+. ++..++.++..+.|-...
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchh
Confidence 55666778899999999984 44 68889999999999998877543322 233478888776554333
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=115.59 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=108.1
Q ss_pred CCccccccHHHHHHHHHHHHc--------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch--H
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--N 128 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~ 128 (345)
.|++++.++.+...|...... ....|++||||||||||.+|+.|+..- +.++-.+.+.|..+. +
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchH
Confidence 488899888887777665532 334579999999999999999999986 566666666664332 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHH---HHHHHHHHhhcCCceEEEEecCccc
Q 019145 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDA---QNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~---~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.+. .+......... ..+.-+|||||+|.+ +... +|.|+---.+-+....+++++|.+.
T Consensus 427 aVT-kiH~lFDWakk---------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 AVT-KIHKLFDWAKK---------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHH-HHHHHHHHHhh---------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 121 22222111111 113348999999976 2333 3333333334456778899999999
Q ss_pred ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE 230 (345)
Q Consensus 197 ~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~ 230 (345)
.++-++.+|.+ +++|+.|-.++...+|..++.+.
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 99999999998 89999999999999998887653
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.4e-12 Score=116.77 Aligned_cols=211 Identities=20% Similarity=0.224 Sum_probs=139.0
Q ss_pred CCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+..++|....+..+...+.. ....+++++|++||||+++|+.+.... .....+++.++|.... ...+...+-.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~v~v~c~~~~-~~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS---DRKDKRFVAINCAAIP-ENLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC---CcCCCCeEEEECCCCC-hHHHHHHhcC
Confidence 455688877777666666653 233458999999999999999998764 2235678889988642 2222221111
Q ss_pred HHHhhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
........ ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++.. .
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 00000000 111222233566799999999999999999999998632 256788887654 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHH----HHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
.+.+.+..|+. .+.++|+.. +++..++..+ +...+ ..+++++++.|..+. .||+|.+.+.++.++..+
T Consensus 293 ~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 34555666665 566667643 4544444443 33334 358999999999876 899999999999998766
Q ss_pred -CCCCCHHHH
Q 019145 265 -GSSITSKDL 273 (345)
Q Consensus 265 -~~~it~~~v 273 (345)
+..|+.+++
T Consensus 373 ~~~~i~~~~l 382 (445)
T TIGR02915 373 EGNQITAEDL 382 (445)
T ss_pred CCCcccHHHc
Confidence 445777765
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=116.65 Aligned_cols=173 Identities=21% Similarity=0.225 Sum_probs=110.5
Q ss_pred cccccHHHHHHHHHHHH-------c---CC--------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 62 DVAHQEEVVRVLTNTLE-------T---AN--------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-------~---~~--------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.++||+++++.+...+. . .. ..+++|+||||||||++|+++++.+ +.++..+++..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l------~~pf~~~da~~ 151 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL------NVPFAIADATT 151 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc------CCCeEEechhh
Confidence 46799999988876652 1 11 2469999999999999999999987 45555555432
Q ss_pred ccc----hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC--
Q 019145 124 DRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS-- 183 (345)
Q Consensus 124 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~-- 183 (345)
... .......+......... ....+...+|+|||+|.+++ .+++.|+++++...
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~------~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~ 225 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADY------DVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVAN 225 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcc------cHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcccee
Confidence 111 11122222222111100 00112446999999999976 58999999996321
Q ss_pred -----------CceEEEEecCcc---------------------------c-----------------------ccchhh
Q 019145 184 -----------KVTRFFFICNYI---------------------------S-----------------------RIIEPL 202 (345)
Q Consensus 184 -----------~~~~ii~~~n~~---------------------------~-----------------------~l~~~l 202 (345)
.++.+|.|+|-. . .+.|++
T Consensus 226 v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf 305 (413)
T TIGR00382 226 VPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF 305 (413)
T ss_pred cccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence 234455555430 0 134667
Q ss_pred hccce-eEEecCCCHHHHHHHHHHH----HH-------HhCC--CCCHHHHHHHHHhc
Q 019145 203 ASRCA-KFRFKPLSEEVMSSRVLHI----CN-------EEGL--NLDAEALSTLSSIS 246 (345)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~~----~~-------~~~~--~i~~~~~~~l~~~s 246 (345)
..|++ ++.|.|++.+++.+++... .+ ..|+ .+++++++.|++.+
T Consensus 306 lgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 306 IGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred hCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 77876 7889999999999988652 22 1243 47999999999875
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=102.31 Aligned_cols=137 Identities=34% Similarity=0.369 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH---HHHhh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT---FAAVA 141 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 141 (345)
|++..+..+...+......+++++||||+|||++++.+++.+.. .+..++.+++............... .....
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 66778888888887766667999999999999999999999741 2455666666543332222211110 00000
Q ss_pred hcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc------CCceEEEEecCccc--ccchhhhccce-eEEec
Q 019145 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS--RIIEPLASRCA-KFRFK 212 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~------~~~~~ii~~~n~~~--~l~~~l~~r~~-~i~~~ 212 (345)
. .......++++||++.+.......+...++.. ...+.+|++++... .+.+.+.+|+. .+.++
T Consensus 79 ~--------~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 L--------AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred h--------hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 0 11234579999999999777777888888765 35678888887766 67888889984 56554
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-12 Score=122.43 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=133.9
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-----------CCC-----------------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-----------GPE----------------- 110 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-----------~~~----------------- 110 (345)
.|.+++||+.++..+.-....+...++||.|++|||||++|+++++.+- |..
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4778999999999888877777667799999999999999999998871 110
Q ss_pred -CCCCceeeeecCCccchHHHHHHH--HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----
Q 019145 111 -LYKSRVLELNASDDRGINVVRTKI--KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---- 183 (345)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---- 183 (345)
....+|+.+.+... .+.+...+ ...... .......+....+..++|+|||++.++...++.|+..+++..
T Consensus 82 ~~~~~pfv~~p~~~t--~~~l~G~~d~~~~l~~-g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 82 EQRPVPFVNLPLGAT--EDRVVGSLDIERALRE-GEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred ccCCCCeeeCCCCCc--HHHcCCcccHHHHhhc-CCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 01223444333211 11000000 000000 000011222234466799999999999999999999998642
Q ss_pred ---------CceEEEEecCcc-cccchhhhccce-eEEecCCC-HHHHHHHHHHHHH-----------------------
Q 019145 184 ---------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN----------------------- 228 (345)
Q Consensus 184 ---------~~~~ii~~~n~~-~~l~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~----------------------- 228 (345)
..+.+|.++|.. ..+.+++.+|+. .+.+..+. .++..+++.....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 345666666754 357789999997 45555543 3443333332110
Q ss_pred ------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhh
Q 019145 229 ------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 229 ------~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~ 277 (345)
...+.+++++++.+++.+ +- .+|..+..+..+...+ + ..|+.+||.+++
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~ 301 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 301 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 124678899988888765 22 3677666665443333 3 569999997764
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=115.00 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=134.8
Q ss_pred ccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch-HHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI-NVVRTKIK 135 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 135 (345)
..+.|++..+..++.|+.. .....++++|.||||||.+...+...+.+ .......+.++|...... ..+.....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-SSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-hcccceeEEEeeccccchHHHHHHHHH
Confidence 4567888888777777754 45556999999999999999988877632 223446678888763333 23333333
Q ss_pred HHHHhhhcCCCC--------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---CceEEEEecCccc---ccchh
Q 019145 136 TFAAVAVGSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNYIS---RIIEP 201 (345)
Q Consensus 136 ~~~~~~~~~~~~--------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---~~~~ii~~~n~~~---~l~~~ 201 (345)
.+.....+.+.. .........-++++||+|.|....+..|+.+++++. ....+|.++|..+ ++.+.
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 331211111100 000011234589999999998877778887777643 3344444566554 45566
Q ss_pred hhccce----eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHh
Q 019145 202 LASRCA----KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSIS---QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 202 l~~r~~----~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~s---~g~~r~~~~~l~~~~~~~ 264 (345)
|..++. .+.|+||+.+++..+++.++..+... +-+.+++.+++.+ .||+|.++..++.+...+
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 666443 89999999999999999998876543 4556788887654 799999999998666554
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=114.94 Aligned_cols=212 Identities=20% Similarity=0.262 Sum_probs=140.8
Q ss_pred CCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+.+++|....+..+...+.. ....+++++|++||||+++|+++++.. .....+|+.++|... ....+...+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~i~i~c~~~-~~~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS---PRAKAPFIALNMAAI-PKDLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC---CCCCCCeEeeeCCCC-CHHHHHHHhcC
Confidence 456788887777666655543 223358999999999999999998864 223568899999764 22222221111
Q ss_pred HHHhh-hcCC-CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVA-VGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~-~~~~-~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
..... .+.. ...+....+..+.++|||++.++...+..|++++++.. .++++|++++.. .
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 00000 0000 01111223456789999999999999999999998642 245788887643 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
.+.+.+..|+. .+.++|+.. +++..++..++. ..+. .+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 292 ~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 35577777775 566677653 566555555443 3332 48999999999876 899999999999988765
Q ss_pred -CCCCCHHHHH
Q 019145 265 -GSSITSKDLI 274 (345)
Q Consensus 265 -~~~it~~~v~ 274 (345)
+..|+.+++.
T Consensus 372 ~~~~i~~~~l~ 382 (469)
T PRK10923 372 AGQEVLIQDLP 382 (469)
T ss_pred CCCcccHHHCc
Confidence 5568887764
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=101.02 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=136.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHH----HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLT----NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~----~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
-...+.|..+.+++|-+.....|. ..+......|+||+|..|||||++++++.+++... +...++++..+...
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~---glrLVEV~k~dl~~ 126 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE---GLRLVEVDKEDLAT 126 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc---CCeEEEEcHHHHhh
Confidence 345666778889999766665554 34445555679999999999999999999998554 34588888776555
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHHHHh----hcCCceEEEEecCcccccchh
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~~le----~~~~~~~ii~~~n~~~~l~~~ 201 (345)
...+.+.++.. ..+-||++|++..=. .+....|...+| ..|.++.+..|+|..+.++..
T Consensus 127 Lp~l~~~Lr~~----------------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 127 LPDLVELLRAR----------------PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred HHHHHHHHhcC----------------CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHh
Confidence 55554444432 234589999976443 234455555554 567788888888776554422
Q ss_pred ----------------------hhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH-----HHhcCCCHHHH
Q 019145 202 ----------------------LASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL-----SSISQGDLRRA 253 (345)
Q Consensus 202 ----------------------l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l-----~~~s~g~~r~~ 253 (345)
+..|+. .+.|.|++.++..+++..+++..++.++++.++.= ..+.+.+-|.+
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A 270 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVA 270 (287)
T ss_pred hhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhH
Confidence 234555 78999999999999999999999999987554443 34456777888
Q ss_pred HHHHHHHHHH
Q 019145 254 ITYLQGAARL 263 (345)
Q Consensus 254 ~~~l~~~~~~ 263 (345)
..-++.++..
T Consensus 271 ~QF~~~~~g~ 280 (287)
T COG2607 271 WQFIRDLAGR 280 (287)
T ss_pred HHHHHHHHhh
Confidence 8877777644
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-12 Score=116.73 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=140.8
Q ss_pred ccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC----
Q 019145 61 KDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD---- 123 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---- 123 (345)
.++.|....+..++..+.- ..+..+|+|||||||||.++++++++. +..++.++++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISK 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHh
Confidence 4566666666666655532 233459999999999999999999998 56677777653
Q ss_pred --ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----------HHHHHHHHHHhhcC--CceEEE
Q 019145 124 --DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----------DAQNALRRTMETYS--KVTRFF 189 (345)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----------~~~~~l~~~le~~~--~~~~ii 189 (345)
..+...++..+....... .+.+++|||++.+-+ .....++.+++... .+++++
T Consensus 258 ~~gEte~~LR~~f~~a~k~~-------------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQ-------------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred cccchHHHHHHHHHHHhccC-------------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 123344455555443322 146999999998853 34567888888765 667777
Q ss_pred EecCcccccchhhhc-cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CC
Q 019145 190 FICNYISRIIEPLAS-RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 190 ~~~n~~~~l~~~l~~-r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~ 266 (345)
.++|.++.+++++++ |++ .+.+.-|+..+..++++..++..+.. +...+..++..+.|....-+..+...+... ..
T Consensus 325 ~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 325 AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 888999999999996 776 78999999999999999999887775 677899999998887755444444444332 22
Q ss_pred CCCHHHHHHhhCCCCH
Q 019145 267 SITSKDLISVSGVIPP 282 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~ 282 (345)
+ +++++..+.....+
T Consensus 404 ~-~~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 404 R-TLEIFQEALMGIRP 418 (693)
T ss_pred h-hHHHHHHHHhcCCc
Confidence 1 44455544444333
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=111.01 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=108.0
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH--------
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------- 134 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (345)
++|++..++.|.+++..+....++++||.|+|||++++.+.+.+..... ..+.+..............+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 5789999999999999887778999999999999999999998732211 22222332222222222210
Q ss_pred -HHHHHhhhcCCC------CCCCC-------------CCCCeEEEEEcCCCCCC------HHHHHHHHHHHhh--cCCce
Q 019145 135 -KTFAAVAVGSGQ------RRGGY-------------PCPPYKIIILDEADSMT------EDAQNALRRTMET--YSKVT 186 (345)
Q Consensus 135 -~~~~~~~~~~~~------~~~~~-------------~~~~~~iliiDE~~~l~------~~~~~~l~~~le~--~~~~~ 186 (345)
............ ..... .....-+|+|||++.+. +.....|..+++. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 010111000000 00000 01123799999999987 4556677777776 23455
Q ss_pred EEEEecCcccc------cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHhcCCCHHHHH
Q 019145 187 RFFFICNYISR------IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL--DAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 187 ~ii~~~n~~~~------l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~~~~l~~~s~g~~r~~~ 254 (345)
.+|+++..... -...+..|+..+.++|++.++..+++...++.. ..+ +++.++.+...+||+|+.+.
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 56666543221 123456677789999999999999999988766 544 99999999999999998754
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-11 Score=104.95 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=114.8
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+.|..-.+++-.......+..++..+ .+++|.||||||||++++.+++.+ +.+++.+++.......++-..
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~DliG~ 109 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRIDLVGK 109 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhhcCCC
Confidence 344554445666667777777777554 369999999999999999999999 677777777654333221110
Q ss_pred HH-HHHHhhhcCCCCCCCCC---CCCeEEEEEcCCCCCCHHHHHHHHHHHhhc--------------CCceEEEEecCcc
Q 019145 134 IK-TFAAVAVGSGQRRGGYP---CPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYI 195 (345)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~---~~~~~iliiDE~~~l~~~~~~~l~~~le~~--------------~~~~~ii~~~n~~ 195 (345)
.. ...... ....-..++. .....++++||++..+++.+..|..++|.. .+..++|.|+|+.
T Consensus 110 ~~~~l~~g~-~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 110 DAIVLKDGK-QITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred ceeeccCCc-ceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 00 000000 0000000000 123457999999999999999999998731 1356778888874
Q ss_pred c------------ccchhhhcccee-EEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHH
Q 019145 196 S------------RIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN--LDAEALSTLSS 244 (345)
Q Consensus 196 ~------------~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~~~l~~ 244 (345)
. .+..+..+|+.+ +.+.-|+.++-.+++...+. ++. .+++.++.+++
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~mV~ 250 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAMVR 250 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHHHH
Confidence 3 367899999984 57999999999999876542 221 13445555544
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-13 Score=108.65 Aligned_cols=117 Identities=29% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC----------------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS---------------- 122 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------------- 122 (345)
+|.+++||+..+.++.-+...+ .|++|+||||||||++|+.+..-+ +........++...
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL--P~l~~~e~le~~~i~s~~~~~~~~~~~~~~ 76 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL--PPLTEEEALEVSKIYSVAGLGPDEGLIRQR 76 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS----CCEECCESS--S-TT---S---EEEE--
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC--CCCchHHHhhhccccccccCCCCCceecCC
Confidence 5889999999999998777654 589999999999999999998766 21111111111110
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
..+.... ..........+....++....+.++|||+||+..+++...+.|++.+++.
T Consensus 77 Pfr~phh---s~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 77 PFRAPHH---SASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp -EEEE-T---T--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CcccCCC---CcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 0000000 00111111111223455566678889999999999999999999999864
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-11 Score=112.30 Aligned_cols=212 Identities=21% Similarity=0.224 Sum_probs=134.7
Q ss_pred CccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHH
Q 019145 60 VKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (345)
+..++|....+..+...+.. ....+++++|++||||+++|+.+.... .....+++.++|..... ..+...+-..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~~~i~c~~~~~-~~~~~~lfg~ 217 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS---RRAKGPFIKVNCAALPE-SLLESELFGH 217 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC---CCCCCCeEEEECCCCCH-HHHHHHhcCC
Confidence 34577766655555554433 223358999999999999999998764 22356888899876422 2222111110
Q ss_pred HHhhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------c
Q 019145 138 AAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (345)
Q Consensus 138 ~~~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~ 197 (345)
....... ....+....+..++|+|||++.++...+..|+.++++.. .++++|++++... .
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 0000000 001122233556799999999999999999999998532 2467888886432 3
Q ss_pred cchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-
Q 019145 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (345)
Q Consensus 198 l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~- 264 (345)
+.+.+..++. .+.++|+.. +++..++..++ ...+ ..+++++++.+..+. .||+|.+.+.++.++..+
T Consensus 298 ~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 298 FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 4455666655 456666642 45544443333 3223 358999999999876 899999999999888665
Q ss_pred CCCCCHHHHHH
Q 019145 265 GSSITSKDLIS 275 (345)
Q Consensus 265 ~~~it~~~v~~ 275 (345)
+..|+.+++..
T Consensus 378 ~~~i~~~~l~~ 388 (457)
T PRK11361 378 GPIIFSEDLPP 388 (457)
T ss_pred CCcccHHHChH
Confidence 44677777653
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-11 Score=109.77 Aligned_cols=212 Identities=17% Similarity=0.198 Sum_probs=133.0
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
.++|....+..+...+.. ....+++++|++|+||+++|+.+.+.. ...+.+++.++|... ....+...+-....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s---~r~~~~f~~i~c~~~-~~~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS---PRASKPFIAINCGAL-PEQLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc---CCCCCCeEEEeCCCC-CHHHHHHHhcCCCc
Confidence 456655544444333322 233458999999999999999998864 223568899998864 22222221111000
Q ss_pred hhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cccc
Q 019145 140 VAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRII 199 (345)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l~ 199 (345)
..... ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 211 GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred CCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 00000 001112223456799999999999999999999998643 146788877642 1233
Q ss_pred hhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-CC
Q 019145 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~~ 266 (345)
+.+..++. .+.++|+.. +++..++..++. ..+ ..+++++++.|..+. .||+|.+.+.++.++..+ +.
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~ 370 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSP 370 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 44555554 456666643 455544444433 233 248999999999988 999999999999988665 45
Q ss_pred CCCHHHHHHhh
Q 019145 267 SITSKDLISVS 277 (345)
Q Consensus 267 ~it~~~v~~~~ 277 (345)
.|+.+++...+
T Consensus 371 ~i~~~~l~~~~ 381 (444)
T PRK15115 371 VISDALVEQAL 381 (444)
T ss_pred ccChhhhhhhh
Confidence 68888775433
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=112.09 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=98.1
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc-ch--------
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GI-------- 127 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~-------- 127 (345)
+.+|+++.|+...++.+.-.+..+ .+++|.||||+|||++++.+...+. ......+++....... +.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp--~~~~~~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILP--PLTNEEAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccC--CCCCcEEEeccccccchhhhccccccc
Confidence 348899999999988887666544 4799999999999999999987652 1111122222111000 00
Q ss_pred -HHHHH---HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEE
Q 019145 128 -NVVRT---KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFF 190 (345)
Q Consensus 128 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~ 190 (345)
..++. ..........+....++....+..++|||||++.+++..++.|++.+|+.. ..+.+|.
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIa 343 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVA 343 (499)
T ss_pred cCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEE
Confidence 00000 000000000111123333445677899999999999999999999998642 4567888
Q ss_pred ecCcc-----------------------cccchhhhccce-eEEecCCCHH
Q 019145 191 ICNYI-----------------------SRIIEPLASRCA-KFRFKPLSEE 217 (345)
Q Consensus 191 ~~n~~-----------------------~~l~~~l~~r~~-~i~~~~~~~~ 217 (345)
++|+. .++..++++|++ .+.+++++.+
T Consensus 344 a~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 344 AMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred ecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 87742 147888999998 5677766543
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=109.85 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~------------~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~ 207 (345)
...+||||||+|++.. .+|..|++++|... .+..||+.+ ..+..+.|.+..|+.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 3578999999999852 36889999998522 234445443 245558899999998
Q ss_pred -eEEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 019145 208 -KFRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (345)
Q Consensus 208 -~i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s--------~g~~r~~~~~l~~~~ 261 (345)
++.+.+++.+++..+|.. .++.+|+. ++++++..|++.+ +--.|.+-..++.+.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999988732 23455654 7999999998764 334566666665554
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-10 Score=109.00 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=139.9
Q ss_pred ccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
..++|.......+...+.. +....+++.|++||||+++++++.+.. .....+++.++|... ..+.+...+-...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~---~~~~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS---PRANGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC---CCCCCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 4577776666555555433 233358999999999999999998864 223568888998764 2222222220000
Q ss_pred Hhhh-c-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------cc
Q 019145 139 AVAV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (345)
Q Consensus 139 ~~~~-~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~l 198 (345)
.... + .....+....+..+.|+|||++.++...+..|++++++.. .++++|++++... .+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 0000 0 0001111223446789999999999999999999998642 2467888876432 34
Q ss_pred chhhhccce--eEEecCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-C
Q 019145 199 IEPLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-G 265 (345)
Q Consensus 199 ~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~ 265 (345)
.+.+..|+. .++++|+. .+++..++..++. ..+ ..+++++++.|..+. .||+|.+.+.++.++..+ +
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 456777765 67778876 5677776665543 333 358999999999886 899999999999988766 4
Q ss_pred CCCCHHHHHH
Q 019145 266 SSITSKDLIS 275 (345)
Q Consensus 266 ~~it~~~v~~ 275 (345)
..|+.+++..
T Consensus 370 ~~i~~~~l~~ 379 (463)
T TIGR01818 370 DEVLVSDLPA 379 (463)
T ss_pred CcccHHhchH
Confidence 5688877753
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-13 Score=104.25 Aligned_cols=116 Identities=23% Similarity=0.219 Sum_probs=75.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE 163 (345)
+++|+||||||||++++.+++.+ +..++.+++........+....... ................+..+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECC
Confidence 48999999999999999999999 7788888887755554432211110 0000000000000112567999999
Q ss_pred CCCCCHHHHHHHHHHHhhcC-------------C------ceEEEEecCccc----ccchhhhccc
Q 019145 164 ADSMTEDAQNALRRTMETYS-------------K------VTRFFFICNYIS----RIIEPLASRC 206 (345)
Q Consensus 164 ~~~l~~~~~~~l~~~le~~~-------------~------~~~ii~~~n~~~----~l~~~l~~r~ 206 (345)
++..+.+.++.|..++++.. . +..+|+++|+.. .+.+++++||
T Consensus 74 in~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp CGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 99999999999999998422 1 278888888877 7888998886
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-11 Score=113.44 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---------------------CceEEEEecCcc--cccchhhhccce---
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA--- 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~---------------------~~~~ii~~~n~~--~~l~~~l~~r~~--- 207 (345)
++.++|+|||++.++...|..|++.+++.. ..+++|+++|.. ..+.+.+.+|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 456899999999999999999999996421 245678888764 468899999987
Q ss_pred e-EEecC---CCHHH---HHHHHHHHHHHhC--CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHh----
Q 019145 208 K-FRFKP---LSEEV---MSSRVLHICNEEG--LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLF---- 264 (345)
Q Consensus 208 ~-i~~~~---~~~~~---~~~~l~~~~~~~~--~~i~~~~~~~l~~~s----------~g~~r~~~~~l~~~~~~~---- 264 (345)
+ +.|.. .+.+. +..++.+.++..| ..++++++..+.+.+ ..+.|.+-+.+..+...+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 34432 23333 4556666666664 358999999998542 245788888887764433
Q ss_pred CCCCCHHHHHHhhCC
Q 019145 265 GSSITSKDLISVSGV 279 (345)
Q Consensus 265 ~~~it~~~v~~~~~~ 279 (345)
...|+.++|.+++..
T Consensus 376 ~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 376 KVYVTAEHVLKAKKL 390 (608)
T ss_pred CceecHHHHHHHHHH
Confidence 245999999876543
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=105.75 Aligned_cols=174 Identities=23% Similarity=0.259 Sum_probs=114.3
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
..+..+|+.+-|....+..+.+.+.-. .+..++||||||+|||.++++++..+ +.+++.+.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ 198 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVV 198 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEee
Confidence 344558888888888888887776431 22338999999999999999999998 77887776
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS 183 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~ 183 (345)
++...+ ...+++.+...... ...++++||+|... ...+..|.++++...
T Consensus 199 ss~lv~kyiGEsaRlIRemf~yA~~~--------------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 199 SSALVDKYIGESARLIRDMFRYAREV--------------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD 264 (388)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhh--------------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence 654222 22333333333322 22699999999762 244566666666433
Q ss_pred -----CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHHHHhcCC
Q 019145 184 -----KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICN---EEGLNLDAEALSTLSSISQG 248 (345)
Q Consensus 184 -----~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~---~~~~~i~~~~~~~l~~~s~g 248 (345)
..+.+|+++|.++.++++|.+ |.+ .++.+.|+..-...+++-... ..| .++.+++-.+.+..+|
T Consensus 265 gfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G-eid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 265 GFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG-EIDDEAILKLVDGFNG 339 (388)
T ss_pred cchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccc-cccHHHHHHHHhccCh
Confidence 468899999999999999998 444 566665555444443322111 112 3677777777666655
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=106.90 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 71 ~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
..+..|+..+. +++|+||||||||++|+++++.+ +.+++.++.... .. .... +.. ..+.-..+
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~d----~~-~L~G-~i~---~~g~~~dg 172 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIMD----EF-ELKG-FID---ANGKFHET 172 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecChH----HH-hhcc-ccc---ccccccch
Confidence 45566665554 69999999999999999999997 566776663210 00 0000 000 00000000
Q ss_pred C---CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcc-----------cccchhhhcc
Q 019145 151 Y---PCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-----------SRIIEPLASR 205 (345)
Q Consensus 151 ~---~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~-----------~~l~~~l~~r 205 (345)
+ ......+|+|||++.++++.+..|..++++. ++++++|+++|.. ..+.+++++|
T Consensus 173 pLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDR 252 (383)
T PHA02244 173 PFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDR 252 (383)
T ss_pred HHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhh
Confidence 0 0134569999999999999999999998632 3578899999873 4578999999
Q ss_pred ceeEEecCCCH
Q 019145 206 CAKFRFKPLSE 216 (345)
Q Consensus 206 ~~~i~~~~~~~ 216 (345)
|..+.|.-++.
T Consensus 253 Fv~I~~dyp~~ 263 (383)
T PHA02244 253 FAPIEFDYDEK 263 (383)
T ss_pred cEEeeCCCCcH
Confidence 99999988763
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=97.93 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=110.2
Q ss_pred eeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 117 LELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+.+-..+..+++.+++.+......+. ..+ ++|++++.++...+++|++.+|++|.++.+|++|+.+.
T Consensus 29 ~~~f~~~~i~Vd~iReii~~~~~~~~------------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~ 95 (206)
T PRK08485 29 LRFFIKEEFKIEDAKEVIAEAYIAES------------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKN 95 (206)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhCCC------------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 33334445788888887777544321 123 46789999999999999999999999999999999999
Q ss_pred ccchhhhcccee-------------EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 197 RIIEPLASRCAK-------------FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 197 ~l~~~l~~r~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
.+.++++|||.. +.|.+++.+++.+++.. ..++++...+++.+.|+..+.|.+|.++...+....+
T Consensus 96 ~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 96 LLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred hCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 999999999986 67899999999999999 6788888889999999999999999987777666555
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=104.50 Aligned_cols=135 Identities=21% Similarity=0.308 Sum_probs=93.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC---CCCCCCceeeeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG---PELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (345)
+|++||||||||++++++|+.+.- ........+++++..-. +...+...++........ .+.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d---------~~~ 250 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED---------RGN 250 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC---------CCc
Confidence 799999999999999999999831 12233467777774321 222333333333322111 123
Q ss_pred eEEEEEcCCCCCCH---------------HHHHHHHHHHhhc--CCceEEEEecCcccccchhhhccce-eEEecCCCHH
Q 019145 156 YKIIILDEADSMTE---------------DAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEE 217 (345)
Q Consensus 156 ~~iliiDE~~~l~~---------------~~~~~l~~~le~~--~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~ 217 (345)
.-+++|||++.+.. .+.++++.-++.. .+++.++.|+|-.+.++.++.+|.+ +..+.+|+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 45788999998731 2467888888754 3566666677888999999999999 6778899999
Q ss_pred HHHHHHHHHHH
Q 019145 218 VMSSRVLHICN 228 (345)
Q Consensus 218 ~~~~~l~~~~~ 228 (345)
-+.++++....
T Consensus 331 ai~~Ilkscie 341 (423)
T KOG0744|consen 331 AIYEILKSCIE 341 (423)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=107.12 Aligned_cols=152 Identities=24% Similarity=0.212 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhh
Q 019145 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (345)
.++|+++.+..+..++..++ +++|.||||||||++++.+++.+ +.+++.+.+.......++.....-.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 47788888877766666665 69999999999999999999999 67888888876544433321111111000
Q ss_pred -hcCCC-CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc------------CCceEEEEecC-----cccccchhh
Q 019145 142 -VGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------SKVTRFFFICN-----YISRIIEPL 202 (345)
Q Consensus 142 -~~~~~-~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~------------~~~~~ii~~~n-----~~~~l~~~l 202 (345)
..... ..+....+-..++++||++..+++.++.|+..+++. +....+|.++| ....+++++
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ 176 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEAL 176 (329)
T ss_pred cCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHH
Confidence 00000 001111111159999999999999999999999862 12344555667 345579999
Q ss_pred hccc-eeEEecCCCHHHHHH
Q 019145 203 ASRC-AKFRFKPLSEEVMSS 221 (345)
Q Consensus 203 ~~r~-~~i~~~~~~~~~~~~ 221 (345)
.+|| -.+.++.|..++...
T Consensus 177 ldRf~~~~~v~yp~~~~e~~ 196 (329)
T COG0714 177 LDRFLLRIYVDYPDSEEEER 196 (329)
T ss_pred HhhEEEEEecCCCCchHHHH
Confidence 9999 577777774443333
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=99.88 Aligned_cols=214 Identities=16% Similarity=0.115 Sum_probs=131.8
Q ss_pred ccccHHH---HHHHHHHHHc---CCCCcEEEeCCCCCCHHHHHHHHHHHhcC---CCCCCCceeeeecCCccchHHHHHH
Q 019145 63 VAHQEEV---VRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLFG---PELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 63 ~~g~~~~---~~~l~~~l~~---~~~~~lll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+|.+.. ++.+...+.. .+.++++|+|++|.|||++++.+.+.... .+....+++.+.++...+...+...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 4565444 4566666654 45678999999999999999999987531 1122346777777665555544444
Q ss_pred HHHHHHhhhcCCCCCCC--------CCCCCeEEEEEcCCCCC---CHHHHHHHHHHHhhcC--CceEEEEecCc----cc
Q 019145 134 IKTFAAVAVGSGQRRGG--------YPCPPYKIIILDEADSM---TEDAQNALRRTMETYS--KVTRFFFICNY----IS 196 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--------~~~~~~~iliiDE~~~l---~~~~~~~l~~~le~~~--~~~~ii~~~n~----~~ 196 (345)
+-.....+......... ...-+.++|||||+|.+ +...+..+++.+.... -.+.+|+++.. .-
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRAL 195 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHh
Confidence 33333222211111000 01124579999999986 2233444444433222 34456666532 22
Q ss_pred ccchhhhccceeEEecCCCH-HHHHHHHHHHHHHhCC----C-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---C-C
Q 019145 197 RIIEPLASRCAKFRFKPLSE-EVMSSRVLHICNEEGL----N-LDAEALSTLSSISQGDLRRAITYLQGAARLF---G-S 266 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~~~~~~-~~~~~~l~~~~~~~~~----~-i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~-~ 266 (345)
..++.+.+|+..+.+++... ++...++..+-..--+ . -+++....|.+.|+|.+..+.+.+..++..+ | +
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCc
Confidence 35789999999888888754 4555555544432111 1 3567789999999999999999998888766 3 4
Q ss_pred CCCHHHHHHh
Q 019145 267 SITSKDLISV 276 (345)
Q Consensus 267 ~it~~~v~~~ 276 (345)
.||.+.+...
T Consensus 276 ~It~~~l~~~ 285 (302)
T PF05621_consen 276 RITREILDKI 285 (302)
T ss_pred eecHHHHhhC
Confidence 5888887664
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=116.74 Aligned_cols=193 Identities=20% Similarity=0.129 Sum_probs=136.1
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
+-..|+++-|....+..+++.+-. ..+..+||+||||||||..|++++..+-. ......|+.-.+.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~-~~~kisffmrkga 338 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR-GNRKISFFMRKGA 338 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc-cccccchhhhcCc
Confidence 344788888899999888887632 12334999999999999999999998732 2222223222222
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcCC-
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYSK- 184 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~~- 184 (345)
+.. ....++-.+..+.. ..+.|+++||++.+.+ .....|+.+|+..+.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k--------------~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQK--------------TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhc--------------cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence 211 11223333333222 2456999999998742 234567788876553
Q ss_pred -ceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 185 -VTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 185 -~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
.+++|-+||.++.+++++++... .++|+-|+.+...+++.-.-.++.-.+....+..+++.+.|..+.-+..|+..
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTE 484 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHH
Confidence 45566678999999999987543 78999999999999998877777778999999999999988888877777666
Q ss_pred HHH
Q 019145 261 ARL 263 (345)
Q Consensus 261 ~~~ 263 (345)
+..
T Consensus 485 Aal 487 (1080)
T KOG0732|consen 485 AAL 487 (1080)
T ss_pred Hhh
Confidence 544
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-11 Score=105.76 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce-
Q 019145 155 PYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (345)
Q Consensus 155 ~~~iliiDE~~~l~~------------~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~- 207 (345)
..+||||||+|++.. .+|..|++++|... .+..||+.+ ..+..+.|.+..|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 568999999999842 37889999998522 233444443 345568899999998
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s--------~g~~r~~~~~l~~~~ 261 (345)
++.+.+++.+++..+|.. .++.+|+. +++++++.|++.+ +--.|.+-..++++.
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999988833 23345654 7999999998764 333566666666554
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-13 Score=108.48 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=62.5
Q ss_pred HHhhhccccccCcchhhhhhCCCCCccccc-cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 019145 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS 114 (345)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~ 114 (345)
+++++++ .+.+|....+.-..|..--+ .+..+..+...-......+++|+||+|||||++|.++++++.. . +.
T Consensus 3 ~~~~~l~---~a~lp~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~--g~ 76 (178)
T PF01695_consen 3 RIERRLK---QAGLPPDATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIR-K--GY 76 (178)
T ss_dssp ----------------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-T--T-
T ss_pred ccccccc---ccccccccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C--Cc
Confidence 3444444 56666333444444432222 3444455544333345568999999999999999999998843 2 22
Q ss_pred ceeeeecCCc-------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCc
Q 019145 115 RVLELNASDD-------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV 185 (345)
Q Consensus 115 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~ 185 (345)
.+..++..+- .........+..+ .+.++|||||+.... ....+.|+++++.+..+
T Consensus 77 ~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------------~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~ 140 (178)
T PF01695_consen 77 SVLFITASDLLDELKQSRSDGSYEELLKRL----------------KRVDLLILDDLGYEPLSEWEAELLFEIIDERYER 140 (178)
T ss_dssp -EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------------HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT
T ss_pred ceeEeecCceeccccccccccchhhhcCcc----------------ccccEecccccceeeecccccccchhhhhHhhcc
Confidence 3333322110 0000011111111 134699999998764 45667788888877666
Q ss_pred eEEEEecCcc
Q 019145 186 TRFFFICNYI 195 (345)
Q Consensus 186 ~~ii~~~n~~ 195 (345)
..+|++||..
T Consensus 141 ~~tIiTSN~~ 150 (178)
T PF01695_consen 141 KPTIITSNLS 150 (178)
T ss_dssp -EEEEEESS-
T ss_pred cCeEeeCCCc
Confidence 6788899854
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=111.08 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=119.6
Q ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC-CCCCCCCCCCCeE
Q 019145 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYK 157 (345)
Q Consensus 79 ~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (345)
.....+++|.|+||||||++++.+++.+.. ..+|+.+.... ..+.+...+.-......+. ...++....+..+
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~----~~pfv~i~~~~--t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~G 86 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPP----IMPFVELPLGV--TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRG 86 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCc----CCCeEecCccc--chhhcccchhhhhhhhcCcccCCCCCeeeCCCC
Confidence 445678999999999999999999997622 22455555321 1111111110000000000 1112223335667
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecCccc---ccchhhhcccee-EEec-CCCHHHH
Q 019145 158 IIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAK-FRFK-PLSEEVM 219 (345)
Q Consensus 158 iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n~~~---~l~~~l~~r~~~-i~~~-~~~~~~~ 219 (345)
+|++||++.++...++.|+..+++.. ..+.+|.++|... .+.+++..|+.. +... +++.++.
T Consensus 87 vL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 87 VLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred cEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 99999999999999999999998643 3466777777654 688999999883 3333 3455554
Q ss_pred HHHHHHHHH-----------------------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHH---HhC-CCC
Q 019145 220 SSRVLHICN-----------------------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAAR---LFG-SSI 268 (345)
Q Consensus 220 ~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~---~~~-~~i 268 (345)
.+++..... ...+.++++.++.|++.+ +- .+|..+..+..+.. ..| ..|
T Consensus 167 ~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V 246 (589)
T TIGR02031 167 VEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEV 246 (589)
T ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCC
Confidence 555544321 124668999988888765 22 36776666654433 334 459
Q ss_pred CHHHHHHhh
Q 019145 269 TSKDLISVS 277 (345)
Q Consensus 269 t~~~v~~~~ 277 (345)
+.+||..++
T Consensus 247 ~~~Dv~~a~ 255 (589)
T TIGR02031 247 TEEDLKLAV 255 (589)
T ss_pred CHHHHHHHH
Confidence 999998775
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=111.27 Aligned_cols=198 Identities=21% Similarity=0.244 Sum_probs=145.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCc--
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD-- 124 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~-- 124 (345)
+++.-+...++-++|+++.+..+.+.+.....+|-+|+|+||+|||.++..+|......+ +.+..++.++.+.-
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 445556777888999999999999999999999999999999999999999999985322 34555666554321
Q ss_pred ----cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEE
Q 019145 125 ----RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 125 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii 189 (345)
++ .+.+...++..... +.-|+||||+|.+- -+..|.|...+.. +...+|
T Consensus 240 GakyRGeFEeRlk~vl~ev~~~--------------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~I 303 (786)
T COG0542 240 GAKYRGEFEERLKAVLKEVEKS--------------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCI 303 (786)
T ss_pred cccccCcHHHHHHHHHHHHhcC--------------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEE
Confidence 11 12233333332221 24699999999872 3466778888876 345566
Q ss_pred EecC-----cccccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHH
Q 019145 190 FICN-----YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAI 254 (345)
Q Consensus 190 ~~~n-----~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~g------~~r~~~ 254 (345)
-+|+ ..-.-+++|.+||+.+....|+.++...+|+.... .+++.++++++...+..|.. -+.+++
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 5553 22345789999999999999999999999988655 36788999999999988743 467799
Q ss_pred HHHHHHHHHh
Q 019145 255 TYLQGAARLF 264 (345)
Q Consensus 255 ~~l~~~~~~~ 264 (345)
..++.+++..
T Consensus 384 DLiDeA~a~~ 393 (786)
T COG0542 384 DLLDEAGARV 393 (786)
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=110.40 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=100.5
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
++..-.-...+.|++.++..+.-.+..+.. .|+||+|+||||||++++.+++..... .+....
T Consensus 195 ~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~ 269 (509)
T smart00350 195 ERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGK 269 (509)
T ss_pred HHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCC
Confidence 333333334678998888888777766532 169999999999999999999875211 111100
Q ss_pred cCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceE
Q 019145 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTR 187 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ 187 (345)
..+..+... ..+... .........+....+..++++|||++.++...+..|++.|++.. ..+.
T Consensus 270 ~~~~~~l~~--~~~~~~--~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 270 GSSAVGLTA--AVTRDP--ETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred CCCcCCccc--cceEcc--CcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 011101000 000000 00000011222334566799999999999999999999997532 4567
Q ss_pred EEEecCccc-------------ccchhhhcccee--EEecCCCHHHHHHHHHHHH
Q 019145 188 FFFICNYIS-------------RIIEPLASRCAK--FRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 188 ii~~~n~~~-------------~l~~~l~~r~~~--i~~~~~~~~~~~~~l~~~~ 227 (345)
+|.++|+.. .+++++.+||+. +...+++.+.-..++.++.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 888887642 488999999973 3445566655555555543
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=108.18 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---------------------CceEEEEecCcc--cccchhhhccce--
Q 019145 153 CPPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA-- 207 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---------------------~~~~ii~~~n~~--~~l~~~l~~r~~-- 207 (345)
.++.++|+|||++.++...|..|++.+++.. .++++|+++|.. ..+.+.+.+|+.
T Consensus 224 kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~ 303 (637)
T PRK13765 224 KAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGY 303 (637)
T ss_pred ECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccC
Confidence 3456899999999999999999999996432 245678888764 446788888875
Q ss_pred --eEEecC---CCHHHHHHHHHHHHHH---h--CCCCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHHHh---
Q 019145 208 --KFRFKP---LSEEVMSSRVLHICNE---E--GLNLDAEALSTLSSIS---QGD-------LRRAITYLQGAARLF--- 264 (345)
Q Consensus 208 --~i~~~~---~~~~~~~~~l~~~~~~---~--~~~i~~~~~~~l~~~s---~g~-------~r~~~~~l~~~~~~~--- 264 (345)
.+.|.. -+.+....+++..++. + -..++++++..|++++ .|+ .|.+.+.+..+...+
T Consensus 304 ~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~ 383 (637)
T PRK13765 304 GYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE 383 (637)
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh
Confidence 345543 2355666666554433 2 2368999999998754 232 666666666554443
Q ss_pred C-CCCCHHHHHHhh
Q 019145 265 G-SSITSKDLISVS 277 (345)
Q Consensus 265 ~-~~it~~~v~~~~ 277 (345)
+ ..|+.++|.++.
T Consensus 384 ~~~~i~~~~v~~a~ 397 (637)
T PRK13765 384 GAELTTAEHVLEAK 397 (637)
T ss_pred ccceecHHHHHHHH
Confidence 2 347778876664
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-12 Score=100.02 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=78.8
Q ss_pred ccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (345)
++|....++.+.+.++. ....+++|+|++||||+.+|+++.+.- ...+.+|+.++|... +.+.+...+-.....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAAL-PEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS--HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhh-hcchhhhhhhccccc
Confidence 46777777777666654 334569999999999999999998843 334679999999874 322222211110000
Q ss_pred h-hcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcc
Q 019145 141 A-VGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (345)
Q Consensus 141 ~-~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~ 195 (345)
. .+. ....+....+..+.|+|||++.|+...|..|++++++. +.++++|++|+..
T Consensus 77 ~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 0 000 00111112346679999999999999999999999853 2367888888643
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-09 Score=93.24 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=139.3
Q ss_pred CCCCccccccHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (345)
-..|+.+++....++.+....+.-. -..+||.|++||||..+|+++...- ...+.+|+.+||..- +.+...+.+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S---~R~~~pFlalNCA~l-Pe~~aEsEl 275 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS---PRHSKPFLALNCASL-PEDAAESEL 275 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC---cccCCCeeEeecCCC-chhHhHHHH
Confidence 3467788887777666655443321 1249999999999999999987653 344678999999763 222222211
Q ss_pred HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
....++..-+.+-.-.+..+-+++||+..+++..|..|++++.+.. -++++|++|..+ .
T Consensus 276 ---FG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g 352 (511)
T COG3283 276 ---FGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKG 352 (511)
T ss_pred ---hcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcC
Confidence 1111211112233335667899999999999999999999998543 357788877432 2
Q ss_pred ccchhhhccceeEEecCCCH----HH----HHHHHHHHHHHhCCC---CCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCAKFRFKPLSE----EV----MSSRVLHICNEEGLN---LDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~~~~~~----~~----~~~~l~~~~~~~~~~---i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
++-..+..|..++.+.-|+- ++ ...++++.+.+.|+. ++++.+..+.++- .||+|.+.|.+-.++...
T Consensus 353 ~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 353 KFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred chHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 34566677777554443332 22 345667777777765 7899999998874 899999999997666554
Q ss_pred -CCCCCHHHH
Q 019145 265 -GSSITSKDL 273 (345)
Q Consensus 265 -~~~it~~~v 273 (345)
+..++.+++
T Consensus 433 Eg~~l~i~~i 442 (511)
T COG3283 433 EGYELRIEDI 442 (511)
T ss_pred ccCccchhhc
Confidence 555666655
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-10 Score=102.59 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=123.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC--ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEE
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 159 (345)
.++++|+||+|+|||.+++++++++..+.. ..+..++|+. ....+.+...+.......... .+.+|
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~--~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~----------~PSiI 498 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLI--AHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY----------APSII 498 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccc--eEEEEEechhccchhHHHHHHHHHHHHHHHHhh----------CCcEE
Confidence 456999999999999999999999853322 2333345543 334444555555544443332 23599
Q ss_pred EEcCCCCCCH--------------HHHHHHHHHHhhc---CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHH
Q 019145 160 ILDEADSMTE--------------DAQNALRRTMETY---SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVM 219 (345)
Q Consensus 160 iiDE~~~l~~--------------~~~~~l~~~le~~---~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~ 219 (345)
++|++|.+.. .....|.+++..+ .....+|++++....+.+.|.+ +++ ++.+++|...+.
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred EEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHH
Confidence 9999998842 1122333444432 3345677777777777777766 344 789999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh--------CCCCCHHHHHHhhCCCCHHH
Q 019145 220 SSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGAARLF--------GSSITSKDLISVSGVIPPEV 284 (345)
Q Consensus 220 ~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~l~~~~~~~--------~~~it~~~v~~~~~~~~~~~ 284 (345)
.++|...+.+.......+.++.++..++|. .+++.-..+++...+ .+-+|.++..+.+....+..
T Consensus 579 ~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 579 KEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLA 652 (952)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHH
Confidence 999999998877777788888899888774 444444444443222 12367777776665544433
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-12 Score=108.81 Aligned_cols=170 Identities=15% Similarity=0.248 Sum_probs=93.5
Q ss_pred cCCCC-CCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCcccc-ccHHHHHHHH---HHHHcCCC
Q 019145 10 KSGKN-KSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA-HQEEVVRVLT---NTLETANC 82 (345)
Q Consensus 10 ~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-g~~~~~~~l~---~~l~~~~~ 82 (345)
.++.. +.+.+.+.+.. ..+...+..+...+++. ..++|....+.-..|+.-. ++..++..+. .++. ..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~--~~ 105 (254)
T COG1484 31 EQAADCKEWGYAEFLEYLLEEEKLAREARKIERRLR---SASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFE--RG 105 (254)
T ss_pred HhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhc--cC
Confidence 33334 55655555443 22333445555555555 6777766333333333222 2344444433 3444 55
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH-HHHhhhcCCCCCCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ilii 161 (345)
.+++|+||||||||++|.++++++. .. +..+..++.++ -...+...... ....... ....+.++|||
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~e--l~~~Lk~~~~~~~~~~~l~-------~~l~~~dlLIi 173 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPD--LLSKLKAAFDEGRLEEKLL-------RELKKVDLLII 173 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHH--HHHHHHHHHhcCchHHHHH-------HHhhcCCEEEE
Confidence 6899999999999999999999995 33 23333333322 11111111110 0000000 01235679999
Q ss_pred cCCCCC--CHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 162 DEADSM--TEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 162 DE~~~l--~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
||+... ++...+.+++++.........++++|.+.
T Consensus 174 DDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 174 DDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred ecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 999985 45567788888887665555588887653
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=106.27 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=95.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCceeeeecCCc------------cc
Q 019145 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDD------------RG 126 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~------------~~ 126 (345)
++++++.+.....+...+..+ .+++|+||||||||++|+.+++.+.+.. ......+.+..... .+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 567777888888888888754 4799999999999999999999885421 11222333322110 00
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-HHHHHHHHHhh----------------------cC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-AQNALRRTMET----------------------YS 183 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-~~~~l~~~le~----------------------~~ 183 (345)
.......+..+...+.. ......+|||||++....+ ....++.++|. .|
T Consensus 252 y~~~~G~f~~~~~~A~~--------~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKE--------QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred eEecCchHHHHHHHHHh--------cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 00000011111111100 0123469999999998754 45666666652 13
Q ss_pred CceEEEEecCccc----ccchhhhccceeEEecC-CCHHHHHHHH
Q 019145 184 KVTRFFFICNYIS----RIIEPLASRCAKFRFKP-LSEEVMSSRV 223 (345)
Q Consensus 184 ~~~~ii~~~n~~~----~l~~~l~~r~~~i~~~~-~~~~~~~~~l 223 (345)
.++.+|.|.|..+ .++.++++|+..+++.| ++...+.+++
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 4677888888766 58899999999998887 4555566665
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=100.55 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=77.4
Q ss_pred hhhhCCCCCccccc----cHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 52 VEKYRPKQVKDVAH----QEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 52 ~~~~~p~~~~~~~g----~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+.+...+|+.+.. +..++......... ....+++|+|||||||||++.++++.+... +..++.++..+
T Consensus 65 ~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~-- 139 (248)
T PRK12377 65 QPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPD-- 139 (248)
T ss_pred CcccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHH--
Confidence 35677778888763 33344433333322 233579999999999999999999998432 22333333221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCC--CCCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~--~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
-...+......-.... .........++|||||++ ..++..++.|+.+++.+.. ..++|++||..
T Consensus 140 l~~~l~~~~~~~~~~~------~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 140 VMSRLHESYDNGQSGE------KFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHHHhccchHH------HHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111111100000000 000011355799999995 4567788899999998765 46788898854
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-09 Score=99.87 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=132.9
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
.++|....+..+...+.. .....++++|++||||+++++++.... .....+|+.++|.... ...+...+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s---~~~~~~~i~~~c~~~~-~~~~~~~lfg~~~ 215 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS---ARSEKPLVTLNCAALN-ESLLESELFGHEK 215 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcC---CCCCCCeeeeeCCCCC-HHHHHHHhcCCCC
Confidence 355655555444433322 233458999999999999999998764 2235689999998642 2322222211100
Q ss_pred hhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------ccc
Q 019145 140 VAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (345)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~l~ 199 (345)
..... ....+....+..+.|+|||++.++...+..|+.++++.. .++++|++++... .+.
T Consensus 216 ~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~ 295 (441)
T PRK10365 216 GAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295 (441)
T ss_pred CCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCch
Confidence 00000 011122234566799999999999999999999998642 2456777775432 244
Q ss_pred hhhhccce--eEEecCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-CC
Q 019145 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~~ 266 (345)
+.+..++. .+.++|+.. +++..++..++.+ .+ ..+++++++.|..+. .||+|.+.+.++.++..+ +.
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~ 375 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGE 375 (441)
T ss_pred HHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55555655 455555543 3555555554432 23 348999999999987 899999999999988665 45
Q ss_pred CCCHHHHHH
Q 019145 267 SITSKDLIS 275 (345)
Q Consensus 267 ~it~~~v~~ 275 (345)
.|+.+++..
T Consensus 376 ~i~~~~l~~ 384 (441)
T PRK10365 376 YISERELPL 384 (441)
T ss_pred ccchHhCch
Confidence 688777653
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=91.68 Aligned_cols=111 Identities=25% Similarity=0.240 Sum_probs=59.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC--CCCCCCCCCeEEEEE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIIL 161 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ilii 161 (345)
|+||+|+||+|||++++++|+.+ +..|..+.+.......++... .-.....+. ...++.. ..++++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdllPsDi~G~----~v~~~~~~~f~~~~GPif--~~ill~ 68 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLLPSDILGF----PVYDQETGEFEFRPGPIF--TNILLA 68 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT--HHHHHEE----EEEETTTTEEEEEE-TT---SSEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCCcccceee----eeeccCCCeeEeecChhh--hceeee
Confidence 58999999999999999999998 566666665432222222111 000000000 0001111 249999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-----ccchhhhccc
Q 019145 162 DEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-----RIIEPLASRC 206 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-----~l~~~l~~r~ 206 (345)
||++..++..|.+|++.+++.. ....+|.+.|+.+ .++.++.+|+
T Consensus 69 DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 69 DEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred cccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 9999999999999999998643 2344555667643 4677777775
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=99.57 Aligned_cols=106 Identities=24% Similarity=0.316 Sum_probs=69.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
.+++|+||+|||||.+|+++++.+.. ....+++.++++.....+.....+......+.... ......||++|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~--~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v------~~~~~gVVllD 75 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV--GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYV------GAEEGGVVLLD 75 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHH------HHHHHTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--CCccchHHHhhhcccccchHHhhhhhhhhccccee------eccchhhhhhH
Confidence 46899999999999999999999941 12457888888765442222222222211111000 00122399999
Q ss_pred CCCCCCH-----------HHHHHHHHHHhhcC-----------CceEEEEecCccc
Q 019145 163 EADSMTE-----------DAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (345)
Q Consensus 163 E~~~l~~-----------~~~~~l~~~le~~~-----------~~~~ii~~~n~~~ 196 (345)
|+|+..+ .+++.|++++++.. .++.||+++|-..
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999999 99999999998532 4567888886543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=90.28 Aligned_cols=217 Identities=19% Similarity=0.191 Sum_probs=137.2
Q ss_pred hhccccccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
+-++....+..|+....+|..+-...-+.+.+..+...+..+. ..+.++|+.|+|||.+.+++...+... ....+.
T Consensus 9 ~~l~~~g~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~ 84 (269)
T COG3267 9 MLLNHFGFSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNED---QVAVVV 84 (269)
T ss_pred HHHHHhhhccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEE
Confidence 3444444666677776666666556567888888888887765 247999999999999999777776322 112233
Q ss_pred eecCCccchHHHHHHHHHHHHhhhcCCCC----------CCCCCCCCe-EEEEEcCCCCCCHHHHHHHHHHHh---hcCC
Q 019145 119 LNASDDRGINVVRTKIKTFAAVAVGSGQR----------RGGYPCPPY-KIIILDEADSMTEDAQNALRRTME---TYSK 184 (345)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~iliiDE~~~l~~~~~~~l~~~le---~~~~ 184 (345)
++.............+..+.. .+..... ......+++ .++++||++.+..+..+.+..+.+ +...
T Consensus 85 i~~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~ 163 (269)
T COG3267 85 IDKPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSK 163 (269)
T ss_pred ecCcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccC
Confidence 444332111111111111111 0000000 000011233 699999999999888887765554 4445
Q ss_pred ceEEEEecCcc------cccchhhhcccee-EEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHH
Q 019145 185 VTRFFFICNYI------SRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 185 ~~~ii~~~n~~------~~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~s~g~~r~~~ 254 (345)
...+++++-+. ......+..|+.+ +..+|++.++...+|+.+++..+.+ ++++++..+...+.|-+|. +
T Consensus 164 ~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~l-i 242 (269)
T COG3267 164 LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRL-I 242 (269)
T ss_pred ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHH-H
Confidence 55677776322 1123456678887 9999999999999999999877654 7899999999999996665 5
Q ss_pred HHHHHHH
Q 019145 255 TYLQGAA 261 (345)
Q Consensus 255 ~~l~~~~ 261 (345)
|.+...|
T Consensus 243 n~~~~~A 249 (269)
T COG3267 243 NNLATLA 249 (269)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-11 Score=95.31 Aligned_cols=163 Identities=16% Similarity=0.215 Sum_probs=113.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~ 164 (345)
.+|+|+.-.-+...++.+.+.+........++..+++.+.. .. ..+..+. ..+..++.++|+|.++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~---~l~~~~~----------s~slF~~~klvii~~~ 66 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDD-ID---ELLEELQ----------SPSLFGDKKLVIIKNA 66 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-H-HH----HTTTST----------TTTSSSSEEEEEEE--
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCc-HH---HHHHHHh----------cCCccCCCeEEEEecC
Confidence 37888888888888899988865555555566666655421 11 1111111 1134567899999998
Q ss_pred ----CCCCHHHHHHHHHHHhhcCCceEEEEecC-cc---cccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 019145 165 ----DSMTEDAQNALRRTMETYSKVTRFFFICN-YI---SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA 236 (345)
Q Consensus 165 ----~~l~~~~~~~l~~~le~~~~~~~ii~~~n-~~---~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~ 236 (345)
+....+..+.|..++.++++++.+|+.++ .. .++.+.+.+.+.++.|.+++..++..|++.++++.|+.+++
T Consensus 67 ~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~ 146 (172)
T PF06144_consen 67 PFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDP 146 (172)
T ss_dssp ---TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-H
T ss_pred ccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 45666788999999999888888888776 33 34667777888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 237 EALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 237 ~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
++++.+++.+++|++.+.+++++++
T Consensus 147 ~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 147 DAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999999999999999999999986
|
7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F. |
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=106.11 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=90.9
Q ss_pred ccccccHHHHHHHHHHHHcCCC---------------------CcEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCceee
Q 019145 61 KDVAHQEEVVRVLTNTLETANC---------------------PHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLE 118 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~---------------------~~lll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~ 118 (345)
..+.|++.++..+.-.+..|.. .|+||+|+||||||.+++.+++...... ..+..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4678999999888777755431 1699999999999999999988541110 00111221
Q ss_pred eecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------Cc
Q 019145 119 LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KV 185 (345)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~ 185 (345)
+.+... ...............+....+..++++|||++.++...+..|++.|++.. ..
T Consensus 530 vgLTa~---------~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar 600 (915)
T PTZ00111 530 VGLTAS---------IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAE 600 (915)
T ss_pred ccccch---------hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCC
Confidence 111110 00000000000111222334567899999999999999999999998642 46
Q ss_pred eEEEEecCccc-------------ccchhhhccceeE--EecCCCH
Q 019145 186 TRFFFICNYIS-------------RIIEPLASRCAKF--RFKPLSE 216 (345)
Q Consensus 186 ~~ii~~~n~~~-------------~l~~~l~~r~~~i--~~~~~~~ 216 (345)
+.+|.++|+.. .+++++++||+.+ ....++.
T Consensus 601 ~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 601 TAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred eEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 77888887632 3678999999732 3344443
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-09 Score=93.31 Aligned_cols=170 Identities=14% Similarity=0.020 Sum_probs=103.7
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee------------------
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL------------------ 119 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~------------------ 119 (345)
..|..++|++.....|.-..-......+||.|+.||||||++++++.-+-.-......-+.+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 35667899999988876665556667799999999999999999999872110000000000
Q ss_pred --------------ecCCccchHHHHHHHHHHHHh-hhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc--
Q 019145 120 --------------NASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-- 182 (345)
Q Consensus 120 --------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-- 182 (345)
+.+...+.+.+-..+.-.... .......++....++++|++|||+..|+...++.|+..++..
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 001111111000000000000 000111344455678999999999999999999999999863
Q ss_pred -----------CCceEEEEecCcc-cccchhhhccce-eEEecCC-CHHHHHHHHHHHH
Q 019145 183 -----------SKVTRFFFICNYI-SRIIEPLASRCA-KFRFKPL-SEEVMSSRVLHIC 227 (345)
Q Consensus 183 -----------~~~~~ii~~~n~~-~~l~~~l~~r~~-~i~~~~~-~~~~~~~~l~~~~ 227 (345)
+..+.+|.+.|+. ..+.+.|+.||. .+...++ +.++...++.+..
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 2355566677765 458899999976 5665555 4455555555544
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-09 Score=97.94 Aligned_cols=218 Identities=23% Similarity=0.222 Sum_probs=124.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-------------c
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------------D 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------~ 124 (345)
.+|.++.|+..++..+.-.+. ...+++|+||+|+|||++++.+...+. .......+++..-. .
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllp--p~~g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLP--DLSNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCC--CCCCcEEEecchhhhhhccccccCCcCC
Confidence 377888899888877754443 335799999999999999999987662 11111112211100 0
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-------------CCceEEEEe
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-------------~~~~~ii~~ 191 (345)
+.....-...........+....++....+..+++++||++.++...++.|++.+++. +.++.+|.+
T Consensus 264 rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 264 RPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 0000000000001111111112334445667789999999999999999999999753 235677877
Q ss_pred cCccc---------------------ccchhhhccce-eEEecCCCHH-------------HHHHHHHHHHH---H--h-
Q 019145 192 CNYIS---------------------RIIEPLASRCA-KFRFKPLSEE-------------VMSSRVLHICN---E--E- 230 (345)
Q Consensus 192 ~n~~~---------------------~l~~~l~~r~~-~i~~~~~~~~-------------~~~~~l~~~~~---~--~- 230 (345)
+|+.. ++..++++|++ .+.+++++.+ ++++.+....+ . .
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~ 423 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNK 423 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHH
Confidence 77542 46778999998 4677766432 23322211000 0 0
Q ss_pred -C-----------CCCCHHHHHHHH---HhcCCCHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhCC
Q 019145 231 -G-----------LNLDAEALSTLS---SISQGDLRRAITYLQGAARLF---G-SSITSKDLISVSGV 279 (345)
Q Consensus 231 -~-----------~~i~~~~~~~l~---~~s~g~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~ 279 (345)
+ +.++.++.+.+. ...+-..|.....+.-+...+ + ..|+.+||.+++.-
T Consensus 424 ~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 424 LNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 1 223444433332 233445777666665554444 3 55889988888763
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=99.28 Aligned_cols=152 Identities=25% Similarity=0.264 Sum_probs=101.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
..+|||||||||||.+|+.+.+-++..+.+- +|++ -..+...++..+..........+ ..+.-
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKI-----VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g------~~SgL 325 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKI-----VNGPEILNKYVGESEENVRKLFADAEEEQRRLG------ANSGL 325 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcc-----cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC------ccCCc
Confidence 3489999999999999999999987654432 2332 23445667777776655533222 12344
Q ss_pred EEEEEcCCCCCC-------------HHHHHHHHHHHhhcC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHH
Q 019145 157 KIIILDEADSMT-------------EDAQNALRRTMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEV 218 (345)
Q Consensus 157 ~iliiDE~~~l~-------------~~~~~~l~~~le~~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~ 218 (345)
.|||+||+|.+- ..+.+.|+.-++... .+..+|-.||..+.++.+|++ |++ .+++.-|++.-
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~g 405 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKG 405 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccC
Confidence 699999998762 346778887776433 355666678999999999998 444 57788888766
Q ss_pred HHHHHHH---HHHHhCCCCCHHH-HHHHHHhc
Q 019145 219 MSSRVLH---ICNEEGLNLDAEA-LSTLSSIS 246 (345)
Q Consensus 219 ~~~~l~~---~~~~~~~~i~~~~-~~~l~~~s 246 (345)
..++++- +.+..+. +++++ ++.|+..+
T Consensus 406 RlQIl~IHT~rMre~~~-l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 406 RLQILKIHTKRMRENNK-LSADVDLKELAALT 436 (744)
T ss_pred ceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHh
Confidence 6555543 3444443 44433 66776665
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=96.34 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=87.9
Q ss_pred hhhhCCCCCcccccc---HHHHHHHHHHHHc----C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 52 VEKYRPKQVKDVAHQ---EEVVRVLTNTLET----A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~---~~~~~~l~~~l~~----~-~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.+++...+|+.+... ..++....+.+.. . ....++|+|++|+||||++.++++++... +..++.++..+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ 152 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQ 152 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHH
Confidence 467888889877632 2233333333321 1 22249999999999999999999998432 23444444322
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCC--CCCHHHHHHHHHHHhhcC-CceEEEEecCcccc---
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYISR--- 197 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~--~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~~--- 197 (345)
. ...+... +.... ..............++|||||++ ..+...++.|+.+++... ....+|++||....
T Consensus 153 l--l~~i~~~---~~~~~-~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 153 L--LNRIKST---YKSSG-KEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred H--HHHHHHH---Hhccc-cccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0 0111110 00000 00000000011244699999994 456677888999998654 34568888875432
Q ss_pred --cchhhhcc----ceeEEecCCCH
Q 019145 198 --IIEPLASR----CAKFRFKPLSE 216 (345)
Q Consensus 198 --l~~~l~~r----~~~i~~~~~~~ 216 (345)
+..++.+| |..+.|..++.
T Consensus 227 ~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 227 NQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 34556666 55777777663
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-10 Score=86.73 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=78.9
Q ss_pred cccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhh
Q 019145 64 AHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (345)
+|....++.+.+.+.. ....+++|+|++||||+++|+.+++.-.. ....++.+++.... .+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~-----~~~l~~a---- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP-----AELLEQA---- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC-----HHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc-----HHHHHHc----
Confidence 3555566666665544 33346999999999999999999886421 23344545554422 1222221
Q ss_pred hcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-CCceEEEEecCcc-------cccchhhhccce--eEEe
Q 019145 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-------SRIIEPLASRCA--KFRF 211 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-~~~~~ii~~~n~~-------~~l~~~l~~r~~--~i~~ 211 (345)
..+.++|+|++.++.+.+..|..+++.. ..++++|++++.. ..+.+.+..++. .+.+
T Consensus 69 -------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~l 135 (138)
T PF14532_consen 69 -------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHL 135 (138)
T ss_dssp -------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE
T ss_pred -------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeC
Confidence 2349999999999999999999999864 4678888887533 235566666655 5555
Q ss_pred cC
Q 019145 212 KP 213 (345)
Q Consensus 212 ~~ 213 (345)
+|
T Consensus 136 Pp 137 (138)
T PF14532_consen 136 PP 137 (138)
T ss_dssp --
T ss_pred CC
Confidence 54
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-11 Score=105.56 Aligned_cols=122 Identities=29% Similarity=0.360 Sum_probs=76.9
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec-----C-Ccc-----
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-----S-DDR----- 125 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~-----~-~~~----- 125 (345)
..+|.|++||+..++.+.-....++ |++++||||||||.+|+.+..-+ +.......++++. + ...
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL--Ppls~~E~lE~s~I~s~~g~~~~~~~~~ 250 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSAIHSLAGDLHEGCPLK 250 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC--CCCChHHHHHHHHHhhhcccccccCccc
Confidence 3489999999999999986665554 89999999999999999987655 2211111111110 0 000
Q ss_pred ---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 126 ---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
....--...........+....++....+.++|+|+||+..+.....+.|.+=+|+.
T Consensus 251 ~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 251 IHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred eeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 000000000111111222333455566778899999999999999999999998863
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=94.89 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=67.7
Q ss_pred CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cccchhhhccceeEEecC
Q 019145 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIEPLASRCAKFRFKP 213 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l~~~l~~r~~~i~~~~ 213 (345)
..++++++-++|+...+.+.++.|+..+++.. ....||+++|.. .+..+++++||..+.++-
T Consensus 233 ~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY 312 (361)
T smart00763 233 NRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPY 312 (361)
T ss_pred ccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCC
Confidence 45677899999999999999999999998532 123456677765 356899999999888755
Q ss_pred C-CHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHh
Q 019145 214 L-SEEVMSSRVLHICNEE---GLNLDAEALSTLSSI 245 (345)
Q Consensus 214 ~-~~~~~~~~l~~~~~~~---~~~i~~~~~~~l~~~ 245 (345)
+ +.++-.++.++.+... +..+.+.+++.++..
T Consensus 313 ~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 313 CLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred cCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 4 5566677777766543 455667666665543
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-09 Score=89.47 Aligned_cols=153 Identities=22% Similarity=0.300 Sum_probs=97.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
..|+||.||+|+|||.+|+.+|+.+ +.+|.--++..-. -.+++...+..+....... ...+.++
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L------nVPFaiADATtLTEAGYVGEDVENillkLlqaadyd------V~rAerG 164 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYD------VERAERG 164 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh------CCCeeeccccchhhccccchhHHHHHHHHHHHcccC------HHHHhCC
Confidence 4579999999999999999999999 5666555543211 1233444444443332111 1234667
Q ss_pred EEEEcCCCCCCH--------------HHHHHHHHHHhhc-----C--------------CceEEEEec------------
Q 019145 158 IIILDEADSMTE--------------DAQNALRRTMETY-----S--------------KVTRFFFIC------------ 192 (345)
Q Consensus 158 iliiDE~~~l~~--------------~~~~~l~~~le~~-----~--------------~~~~ii~~~------------ 192 (345)
+|+|||+|.+++ .+|.+|++++|.. | ....++|+|
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 999999999853 4789999999831 1 011233332
Q ss_pred ------------Ccc----------------------cccchhhhccce-eEEecCCCHHHHHHHHHH-----------H
Q 019145 193 ------------NYI----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------I 226 (345)
Q Consensus 193 ------------n~~----------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~ 226 (345)
+.. +.+.|.+..|.. +..+.+++.+.+.++|.. .
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 000 114566777777 567888999888877653 2
Q ss_pred HHHhCC--CCCHHHHHHHHHhc
Q 019145 227 CNEEGL--NLDAEALSTLSSIS 246 (345)
Q Consensus 227 ~~~~~~--~i~~~~~~~l~~~s 246 (345)
++..++ .++++++..+++..
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHH
Confidence 233444 37899999998764
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=92.46 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=86.6
Q ss_pred hhhhCCCCCccccc----cHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 52 VEKYRPKQVKDVAH----QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 52 ~~~~~p~~~~~~~g----~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+.+++.+|+++.. +..++..+..+.... ...+++|+|+||||||+++.++++++... +..++.++..+
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it~~~-- 137 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIITVAD-- 137 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEHHH--
Confidence 46778889998863 334555555555432 22469999999999999999999998432 23333333221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEecCcccc-----
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYISR----- 197 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~-~~~ii~~~n~~~~----- 197 (345)
+...+....... ..............++|+|||++.... -....|..+++.+.. ...+|++||....
T Consensus 138 ----l~~~l~~~~~~~-~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 138 ----IMSAMKDTFSNS-ETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred ----HHHHHHHHHhhc-cccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 111111100000 000000000112457999999987643 345578888887553 5678888885422
Q ss_pred cchhhhccc-----eeEEecCCC
Q 019145 198 IIEPLASRC-----AKFRFKPLS 215 (345)
Q Consensus 198 l~~~l~~r~-----~~i~~~~~~ 215 (345)
+.+.+.+|. ..+.|...+
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCCc
Confidence 334444443 356665433
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=97.33 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH-HHHHHHHHHHHhhhc
Q 019145 67 EEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN-VVRTKIKTFAAVAVG 143 (345)
Q Consensus 67 ~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 143 (345)
+..++.|.+.+.. .....+.|+|++|+|||++|..+++........+. ++.++........ ........+......
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5567788888877 34444899999999999999999988321222222 2223333222222 222222222111000
Q ss_pred CCCCCC---------CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCC
Q 019145 144 SGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214 (345)
Q Consensus 144 ~~~~~~---------~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~ 214 (345)
...... .....++.+||+|+++... ..+.+...+.....+..+|+||.... +...+......+++.++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGTDKVIELEPL 157 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSCEEEEECSS-
T ss_pred cccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 000000 0012346799999987543 44444444443345677888886543 33333333668999999
Q ss_pred CHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 215 SEEVMSSRVLHICNEEG---LNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 215 ~~~~~~~~l~~~~~~~~---~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
+.++..+++.+.+.... ..-.++....|++.|+|.|-.+.-....+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998875444 12235667899999999887754444433
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-09 Score=88.85 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHHHHc----CCC--Cc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee----eeecCCccchHHHH
Q 019145 63 VAHQEEVVRVLTNTLET----ANC--PH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL----ELNASDDRGINVVR 131 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~----~~~--~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~----~~~~~~~~~~~~~~ 131 (345)
+.||.-+.+.+.+.++. ..+ |- +-|+|++||||+..++.+|+.+...+..+..+. ..+.+....++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 45776666655555543 322 22 579999999999999999999865444332222 23445545555555
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------CceEEEEecCcccccc-----
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------KVTRFFFICNYISRII----- 199 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------~~~~ii~~~n~~~~l~----- 199 (345)
..++........ ...+.++|+||+|++++...+.|...++.++ .++++|+.+|......
T Consensus 164 ~eL~~~v~~~v~---------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL 234 (344)
T KOG2170|consen 164 EELKNRVRGTVQ---------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIAL 234 (344)
T ss_pred HHHHHHHHHHHH---------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHH
Confidence 555443332221 1245699999999999999999999998543 4677888875432110
Q ss_pred ------------------hhhh-------------cc------ce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 200 ------------------EPLA-------------SR------CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (345)
Q Consensus 200 ------------------~~l~-------------~r------~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 241 (345)
+.+. ++ .+ .|.|-|++...++..++..+.++|...+.+.++.
T Consensus 235 ~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~er 314 (344)
T KOG2170|consen 235 ENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVER 314 (344)
T ss_pred HHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHH
Confidence 1100 00 01 4677788888888888888888887777777777
Q ss_pred HHHhc
Q 019145 242 LSSIS 246 (345)
Q Consensus 242 l~~~s 246 (345)
+++..
T Consensus 315 va~~l 319 (344)
T KOG2170|consen 315 VANSL 319 (344)
T ss_pred HHHhh
Confidence 76653
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-09 Score=95.87 Aligned_cols=228 Identities=22% Similarity=0.214 Sum_probs=139.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC---CCCCCCCCCCeEEEE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG---QRRGGYPCPPYKIII 160 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ili 160 (345)
.+++.|.|||||-.+++++...- . ...+++.+||... +...+.+.+-.+......+. -..+....+..+.+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s---~-~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNS---E-AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcc---c-ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccH
Confidence 49999999999999999998764 2 5778999999763 33333333322222111111 122334456778999
Q ss_pred EcCCCCCCHHHHHHHHHHHhhcC----------CceEEEEecCcc-------cccchhhhccce--eEEecCCCH-HHHH
Q 019145 161 LDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYI-------SRIIEPLASRCA--KFRFKPLSE-EVMS 220 (345)
Q Consensus 161 iDE~~~l~~~~~~~l~~~le~~~----------~~~~ii~~~n~~-------~~l~~~l~~r~~--~i~~~~~~~-~~~~ 220 (345)
+||+..++-..|..|++++++.. -.+++|.+|+.. ..+...|-.|.. .+.++|+-. .+..
T Consensus 413 ldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~ 492 (606)
T COG3284 413 LDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRI 492 (606)
T ss_pred HHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccH
Confidence 99999999999999999998642 134566665432 234556666766 555655532 2333
Q ss_pred HHHHHHHHH---hCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhC-CCCCHHHH-----HHhhCCCCHHHHHHHHH
Q 019145 221 SRVLHICNE---EGLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLFG-SSITSKDL-----ISVSGVIPPEVVEGLFA 290 (345)
Q Consensus 221 ~~l~~~~~~---~~~~i~~~~~~~l~~~-s~g~~r~~~~~l~~~~~~~~-~~it~~~v-----~~~~~~~~~~~~~~l~~ 290 (345)
..|.++.++ ..+.++++++..|..+ ..||+|.+-|.++.++..++ +.|...|. .+.........-..+++
T Consensus 493 ~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp~~l~~~~~~~~~~~~~~~l~~ 572 (606)
T COG3284 493 PLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLPPELLEEQATPREDIEKAALLA 572 (606)
T ss_pred HHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCCHHHHhhhcccccchHHHHHHH
Confidence 334444333 4467999998888765 59999999999999998874 33433332 22222222222334445
Q ss_pred HHH--cCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019145 291 VCR--SGDFDLANKEVNNIIAEGYPASLLLSQVT 322 (345)
Q Consensus 291 ~~~--~~~~~~a~~~l~~l~~~g~~~~~i~~~l~ 322 (345)
++. +++...+-+.| |++..-+.+.|.
T Consensus 573 al~~~~~~is~aa~~l------gi~R~T~yrklk 600 (606)
T COG3284 573 ALQATNGNISEAARLL------GISRSTLYRKLK 600 (606)
T ss_pred HHHHcCCCHHHHHHHh------CCCHHHHHHHHH
Confidence 443 44554443332 666655555443
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=81.79 Aligned_cols=120 Identities=26% Similarity=0.362 Sum_probs=77.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH-HHHHHHHHhhhcCCCCCCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-TKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilii 161 (345)
+.++|+||.||||||+++.+++.+. ....++.++..+........ +....+... . .....+|+|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~i~i 67 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLEL-I----------KPGKKYIFI 67 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHh-h----------ccCCcEEEE
Confidence 3479999999999999999999873 23456667666533321110 011111111 0 013469999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccc----cchhhhccceeEEecCCCHHHH
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----IIEPLASRCAKFRFKPLSEEVM 219 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~----l~~~l~~r~~~i~~~~~~~~~~ 219 (345)
||++.++ +....+..+.+.. .+..+|+++..... ....+..|...+++.|++-.|.
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999997 4555666666654 56778888754433 3455667888899999997764
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-10 Score=97.94 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=74.2
Q ss_pred cCcchhhhhhCCCCCccccc----cHHHHHHHHHHHHcC----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 46 QSSQPWVEKYRPKQVKDVAH----QEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g----~~~~~~~l~~~l~~~----~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.+..| ..+...+|+++.. +..+......++... ...+++|+||+|||||+++.++++++.. . +..+.
T Consensus 114 ~a~~p--~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~--g~~v~ 188 (306)
T PRK08939 114 SIYMP--KDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-K--GVSST 188 (306)
T ss_pred HcCCC--HhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-c--CCCEE
Confidence 44444 4566677777763 233444445555532 3456999999999999999999999842 2 22333
Q ss_pred eeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHH-HHHhhc-CCceEEEEecC
Q 019145 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALR-RTMETY-SKVTRFFFICN 193 (345)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~-~~le~~-~~~~~ii~~~n 193 (345)
.++.++ -...+...+.. . ..........+.++|||||++.-+ .-..+.++ .+++.+ ....++|+|||
T Consensus 189 ~~~~~~--l~~~lk~~~~~---~----~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 189 LLHFPE--FIRELKNSISD---G----SVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEEHHH--HHHHHHHHHhc---C----cHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 333221 00111111100 0 000000011345799999997653 33443344 455654 36677899998
Q ss_pred cc
Q 019145 194 YI 195 (345)
Q Consensus 194 ~~ 195 (345)
..
T Consensus 260 l~ 261 (306)
T PRK08939 260 FD 261 (306)
T ss_pred CC
Confidence 64
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=92.08 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEE
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ili 160 (345)
...+++|+||+|+||||++.++++++.... +..++.+...+ ....+...+....... ......++||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~--l~~~l~~~~~~~~~~~---------~~~~~~dlLi 182 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVE--GFGDLKDDFDLLEAKL---------NRMKKVEVLF 182 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHH--HHHHHHHHHHHHHHHH---------HHhcCCCEEE
Confidence 345799999999999999999999984321 23344443321 1111111111111000 0112456999
Q ss_pred EcCCCC-------CCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 161 LDEADS-------MTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 161 iDE~~~-------l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
|||++. .+.-..+.|+.+++.... ...+|+++|..
T Consensus 183 IDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 183 IDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred EeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999943 344456678888886653 35678888754
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-08 Score=93.09 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=126.8
Q ss_pred cHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC
Q 019145 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~-~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (345)
+++.+..+.-..-.. ....++|.|+.|+|||++++.++.-+-. ..+|+.+..+. +.+.+...+.-......+.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~--t~~~L~Gg~Dl~~~l~~g~ 81 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGI--ADDRLLGGLDLAATLRAGR 81 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCC--cHHHccCCchHHhHhhcCC
Confidence 445554444333344 5567999999999999999999988721 23444443322 2221111111111111111
Q ss_pred C-CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecCc---ccccchhhhccce
Q 019145 145 G-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNY---ISRIIEPLASRCA 207 (345)
Q Consensus 145 ~-~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n~---~~~l~~~l~~r~~ 207 (345)
. ..++....+..+|||+||+..+++..++.|++.+++.. ..+.+|.+.|. ...+.+++.+|+.
T Consensus 82 ~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~ 161 (584)
T PRK13406 82 PVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLA 161 (584)
T ss_pred cCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheE
Confidence 1 33455556778899999999999999999999998642 22333333221 2458899999998
Q ss_pred -eEEecCCCHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh---C-CCCCHH
Q 019145 208 -KFRFKPLSEEVMS-------SRVLHICNEEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF---G-SSITSK 271 (345)
Q Consensus 208 -~i~~~~~~~~~~~-------~~l~~~~~~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~---~-~~it~~ 271 (345)
.+.+..++..+.. .+...+..-.++.++++.++.+++.+ +- ..|..+..+..+..++ | ..|+.+
T Consensus 162 l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~ 241 (584)
T PRK13406 162 FHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEE 241 (584)
T ss_pred EEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 6777777654432 12222222246889999999887754 32 5677777766554443 3 569999
Q ss_pred HHHHhh
Q 019145 272 DLISVS 277 (345)
Q Consensus 272 ~v~~~~ 277 (345)
||.+++
T Consensus 242 dv~~Aa 247 (584)
T PRK13406 242 DLALAA 247 (584)
T ss_pred HHHHHH
Confidence 998775
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=93.66 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=70.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
.+++|+||+||||||++.++++++... +..++.++..+. ...+......... ............++||||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~~l------~~~l~~~~~~~~~-~~~~~~~~l~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTADEL------IEILREIRFNNDK-ELEEVYDLLINCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHHHH------HHHHHHHHhccch-hHHHHHHHhccCCEEEEe
Confidence 679999999999999999999998533 334444443321 1111110000000 000000011245799999
Q ss_pred CCCCC--CHHHHHHHHHHHhhcCC-ceEEEEecCcccc-----cchhhhccc----eeEEecCCC
Q 019145 163 EADSM--TEDAQNALRRTMETYSK-VTRFFFICNYISR-----IIEPLASRC----AKFRFKPLS 215 (345)
Q Consensus 163 E~~~l--~~~~~~~l~~~le~~~~-~~~ii~~~n~~~~-----l~~~l~~r~----~~i~~~~~~ 215 (345)
|++.. +....+.|+.+++.... ...+|++||.... +.+.+.+|. .++.|...+
T Consensus 254 DlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 254 DLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 99655 55667889999987653 4568888875422 334555553 466665544
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=78.69 Aligned_cols=95 Identities=28% Similarity=0.317 Sum_probs=56.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--------------------hHHHHHHHHHHHHhhh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--------------------INVVRTKIKTFAAVAV 142 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 142 (345)
.+++|+||||||||++++.+++.+.... ..++.+++..... .............
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK--- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh---
Confidence 4689999999999999999999984332 2355555543211 1111111111111
Q ss_pred cCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHH--------HHhhcCCceEEEEecCc
Q 019145 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR--------TMETYSKVTRFFFICNY 194 (345)
Q Consensus 143 ~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~--------~le~~~~~~~ii~~~n~ 194 (345)
....++++||++.+.......... ..........+|+++|.
T Consensus 77 -----------~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -----------LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -----------cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 113699999999997655443322 22333456677888875
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=85.39 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce-e
Q 019145 156 YKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA-K 208 (345)
Q Consensus 156 ~~iliiDE~~~l~~------------~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~-~ 208 (345)
.++|||||+|.+.. .+|--|+.++|... .+..||.++ ..|+.+.|.|..|+. .
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 56999999998732 35667888887422 233344333 567778999999998 7
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc---C-----CCHHHHHHHHHHHH
Q 019145 209 FRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS---Q-----GDLRRAITYLQGAA 261 (345)
Q Consensus 209 i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s---~-----g~~r~~~~~l~~~~ 261 (345)
+++.+++.+++..+|.. .++.+|+. ++++++..|++.+ + =-.|++...++++.
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 99999999999887643 23345654 7999999999765 1 12566666666554
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.5e-09 Score=82.50 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=81.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---ceeeeecCCccchH---HHHHHHHHHHHhhhcCCCC--CCCCCCCCe
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKS---RVLELNASDDRGIN---VVRTKIKTFAAVAVGSGQR--RGGYPCPPY 156 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (345)
++|+|+||+|||++++.++..+........ .++.+......... .+.+.+............. .........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 799999999999999999998854433221 22233332211111 2222222211110000000 000112345
Q ss_pred EEEEEcCCCCCCHHH--------HHHHHHHHhh-cCCceEEEEecCcccc-cchhhhccceeEEecCCCHHHHHHHHHHH
Q 019145 157 KIIILDEADSMTEDA--------QNALRRTMET-YSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHI 226 (345)
Q Consensus 157 ~iliiDE~~~l~~~~--------~~~l~~~le~-~~~~~~ii~~~n~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 226 (345)
-+++||.+|.+.... .+.|..++.. .++++.+++++++... -..........+.+.+++.+++.+++.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 689999999886532 2345566665 4567788888765432 12222223357899999999999999887
Q ss_pred HH
Q 019145 227 CN 228 (345)
Q Consensus 227 ~~ 228 (345)
+.
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=99.47 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=86.2
Q ss_pred ccccccHHHHHHHHHHHHcCC-----C-Cc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc------
Q 019145 61 KDVAHQEEVVRVLTNTLETAN-----C-PH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------ 126 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-----~-~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------ 126 (345)
+.++||++++..+.+.+...+ . +. ++|.||+|+|||-+|+++|..+++. ...++.++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceEEechhhhhhhhhccC
Confidence 357899999999999886633 1 22 7999999999999999999999654 34666676654111
Q ss_pred -------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEE
Q 019145 127 -------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (345)
Q Consensus 127 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~i 188 (345)
..... .+... ....++.||++||++....+.++.|++++++.. .+++|
T Consensus 639 sp~gyvG~e~gg-~Ltea-------------vrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 639 SPPGYVGKEEGG-QLTEA-------------VKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred CCcccccchhHH-HHHHH-------------HhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 11111 11110 234578899999999999999999999999654 47888
Q ss_pred EEecCccc
Q 019145 189 FFICNYIS 196 (345)
Q Consensus 189 i~~~n~~~ 196 (345)
|+|+|...
T Consensus 705 IMTsn~~~ 712 (898)
T KOG1051|consen 705 IMTSNVGS 712 (898)
T ss_pred EEecccch
Confidence 99987643
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=79.74 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCC
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
....+..++.... .-.++||+|||||.+++.+++.+ +..++.++|.+..+...+...+.......
T Consensus 21 ~~~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~G------- 85 (231)
T PF12774_consen 21 CFLTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQSG------- 85 (231)
T ss_dssp HHHHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhcC-------
Confidence 3345555554332 35789999999999999999998 88999999999888888888888876653
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh-------hcC-------------CceEEEEecCc----ccccchhhhc
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME-------TYS-------------KVTRFFFICNY----ISRIIEPLAS 204 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le-------~~~-------------~~~~ii~~~n~----~~~l~~~l~~ 204 (345)
..+++||++.++.+....+.+.+. ... +++.+.++.|+ ...+++.++.
T Consensus 86 --------aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~ 157 (231)
T PF12774_consen 86 --------AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA 157 (231)
T ss_dssp ---------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT
T ss_pred --------chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH
Confidence 389999999999877665544443 111 23445556553 3568999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (345)
-+..+.+..|+...+.+++ +-..|+.
T Consensus 158 lFRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 158 LFRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp TEEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred HhheeEEeCCCHHHHHHHH---HHHcCch
Confidence 9999999999888777766 3455654
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-09 Score=88.93 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=87.4
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC-CCCCC
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGY 151 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (345)
+..++..+. +++|+||+|||||.+++.+.+.+... ......++.+...+...+...++. ...... ...++
T Consensus 26 l~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~q~~ie~----~l~k~~~~~~gP 96 (272)
T PF12775_consen 26 LDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQLQKIIES----KLEKRRGRVYGP 96 (272)
T ss_dssp HHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHHHHCCCT----TECECTTEEEEE
T ss_pred HHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHHHHHHhh----cEEcCCCCCCCC
Confidence 344444443 69999999999999999988765211 222334555443333333322221 111110 11123
Q ss_pred CCCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEecCcc---cccchhhhccceeEE
Q 019145 152 PCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI---SRIIEPLASRCAKFR 210 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~------------~~~~ii~~~n~~---~~l~~~l~~r~~~i~ 210 (345)
..+++-|++|||++.-.. ...+.|.++++... .++.++.++++. ..+.+++.+++.++.
T Consensus 97 ~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~ 176 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILN 176 (272)
T ss_dssp ESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE
T ss_pred CCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEE
Confidence 345667999999987643 35688888887421 245566666542 347889999999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q 019145 211 FKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~ 229 (345)
++.|+.+.+..+...++..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999888887764
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-07 Score=83.30 Aligned_cols=215 Identities=19% Similarity=0.208 Sum_probs=130.0
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
++.++....--.++.|+.++++.|.-.+-.+. .-|++|.|.||+.||.|.+.+.+-.- ..++
T Consensus 331 d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap------RgvY 404 (721)
T KOG0482|consen 331 DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP------RGVY 404 (721)
T ss_pred cHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc------ccce
Confidence 45566655444588999999999887775432 11489999999999999999987651 1111
Q ss_pred e-eecCCccchHHHHHHHHHHHHhhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------
Q 019145 118 E-LNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------- 183 (345)
Q Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------- 183 (345)
. --++...+. .....+. +.... ..-+..-.++.+|.+|||+|++......++.+++|.-.
T Consensus 405 TTGrGSSGVGL--TAAVmkD----pvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~Tt 478 (721)
T KOG0482|consen 405 TTGRGSSGVGL--TAAVMKD----PVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTT 478 (721)
T ss_pred ecCCCCCcccc--chhhhcC----CCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccc
Confidence 1 111111111 1111111 00000 00111234567899999999999888888888888532
Q ss_pred --CceEEEEecCccc-------------ccchhhhccceeE-------------------------------EecCCCHH
Q 019145 184 --KVTRFFFICNYIS-------------RIIEPLASRCAKF-------------------------------RFKPLSEE 217 (345)
Q Consensus 184 --~~~~ii~~~n~~~-------------~l~~~l~~r~~~i-------------------------------~~~~~~~~ 217 (345)
..+.++.++|+.. .++.+|+|||+.+ .|.|++.+
T Consensus 479 LNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~ 558 (721)
T KOG0482|consen 479 LNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPN 558 (721)
T ss_pred hhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHH
Confidence 2233444444321 2678889988732 56666777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 218 VMSSRVLHICNEEGLNLDAEALSTLSSI--------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 218 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------------s~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
-++.+|. .|+...--++++..+.|... +.-.+|.++..+.-..+.+ ...+..+||.+++
T Consensus 559 ~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EAL 635 (721)
T KOG0482|consen 559 LMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEAL 635 (721)
T ss_pred HHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 7777664 34444445677777776532 1346888888876554444 4558888888775
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=84.59 Aligned_cols=214 Identities=21% Similarity=0.191 Sum_probs=115.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
..|+||.||+|+|||.+++.||+-+ +.+|.-.+|..-. -.+++...+..+...+... ...+..+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n------VekAQqG 293 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN------VEKAQQG 293 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCC------HHHHhcC
Confidence 3579999999999999999999999 7888878775421 1234445555544332211 1123567
Q ss_pred EEEEcCCCCCC--------------HHHHHHHHHHHhhc-------------CCc------eEEEEe-cCcccccchhhh
Q 019145 158 IIILDEADSMT--------------EDAQNALRRTMETY-------------SKV------TRFFFI-CNYISRIIEPLA 203 (345)
Q Consensus 158 iliiDE~~~l~--------------~~~~~~l~~~le~~-------------~~~------~~ii~~-~n~~~~l~~~l~ 203 (345)
||+|||+|++. ..+|..|++++|.. +.. ..|+|+ +.-...+.+.+.
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 99999999985 24789999999831 011 112222 233444566666
Q ss_pred ccce--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHh
Q 019145 204 SRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISV 276 (345)
Q Consensus 204 ~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~ 276 (345)
+|.+ .+-|..++.. ..-.......+.+.+...-..+.+.+ .+|+=..=..=+.+..+- -..++.+++-.+
T Consensus 374 rR~~d~slGFg~~s~~---~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~V 450 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSK---GVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRV 450 (564)
T ss_pred HhhcchhcccCCCCCc---cchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHH
Confidence 6665 5666666542 22222222244444444444344433 444432111112221110 123667777777
Q ss_pred hCCCCHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcC
Q 019145 277 SGVIPPEVVEGLFAVCRSGD------FDLANKEVNNIIAEG 311 (345)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~------~~~a~~~l~~l~~~g 311 (345)
+....... .+-.+++++.+ ...|++.+.++.-..
T Consensus 451 LtEPknaL-~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r 490 (564)
T KOG0745|consen 451 LTEPKNAL-GKQYKKLFGMDNVELHFTEKALEAIAQLALKR 490 (564)
T ss_pred HhcchhhH-HHHHHHHhccCCeeEEecHHHHHHHHHHHHhh
Confidence 66543332 23334444432 245677776665433
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=83.16 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC--CceeeeecCC---ccchHHHHHHHHHHHHhhhcCCCC
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK--SRVLELNASD---DRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
+...+..+...+++|+|+|||||||+|.++++.+.. .... ......+... ..+.+.+...+......
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~-~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~------- 79 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFW-KLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN------- 79 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh-hcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc-------
Confidence 444455666678999999999999999999998720 0000 0000001111 11222233333321111
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
....+++||||+......- . +-. .. ......+.+.+++|+..+.|.+++.+++...++.
T Consensus 80 -----~~~~dlLIIDd~G~~~~~~---~--wh~---~~------~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 80 -----DYRIPLIIFDDAGIWLSKY---V--WYE---DY------MKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred -----CCCCCEEEEeCCchhhccc---c--hhh---hc------cchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 0123589999975432110 0 000 00 0234557788899999999999999999998865
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=89.96 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHcC---------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--hHHHHHH
Q 019145 65 HQEEVVRVLTNTLETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTK 133 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~---------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 133 (345)
+++..+..+...+.-. ..+.+||+|+||||||+++++++.++ +.++++++|..-.. .......
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHH
Confidence 4455555555554332 12348999999999999999999999 88888888753211 1111111
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHh--h---cCCceEEEEecCcccccch
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTME--T---YSKVTRFFFICNYISRIIE 200 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le--~---~~~~~~ii~~~n~~~~l~~ 200 (345)
+......+ ...+..+|++-++|-+. ...+..+...+. . ..+.+.+|.+++....+++
T Consensus 479 l~~~f~~a----------~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 479 LQAIFSRA----------RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred HHHHHHHH----------hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCH
Confidence 11111111 11133477777776653 223334444443 1 2245667777888899999
Q ss_pred hhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC
Q 019145 201 PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG 248 (345)
Q Consensus 201 ~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g 248 (345)
.+++.+. .+.++.++.+|..++++.+..... ++.++ ...++..+.|
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSG 596 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCC
Confidence 9988776 899999999999999999986544 44443 5666666654
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-07 Score=82.85 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=67.2
Q ss_pred hCCCCCccccccHHHHHHHH---HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLT---NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~---~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
|.|..|+ ....+..|. .++..+ .|+++.||+||||||++.++.....+. ++ ...+. .
T Consensus 185 ~~P~~~~----~r~k~~~L~rl~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~----------sG-~f~T~---a 244 (449)
T TIGR02688 185 YEPEGFE----ARQKLLLLARLLPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILI----------SG-GTITV---A 244 (449)
T ss_pred CCcccCC----hHHHHHHHHhhHHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHH----------cC-CcCcH---H
Confidence 5665554 333443343 345444 589999999999999999998872111 11 11122 2
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----HHHHHHHHHHhhcC---------CceEEEEecCccc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYS---------KVTRFFFICNYIS 196 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----~~~~~l~~~le~~~---------~~~~ii~~~n~~~ 196 (345)
..+........+ .....++|+|||+..++. +....|..+|++.. ....+++++|-..
T Consensus 245 ~Lf~~L~~~~lg--------~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 245 KLFYNISTRQIG--------LVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHHHHHHHHHHh--------hhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 223322221111 224668999999999643 35567777777532 3567888887543
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-08 Score=91.01 Aligned_cols=144 Identities=21% Similarity=0.194 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~ 126 (345)
++.|++++++.+.-.+..|.. -|+||+|.||||||.+.+-+++-+-.. .+++..-+.+.+.-...
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 567888888887777765421 259999999999999999998876210 00111111111100000
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-------------CCceEEEEecC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFICN 193 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-------------~~~~~ii~~~n 193 (345)
.+. +..+- ..+....++.++.+|||+|+++....+.|.+.||.- ...+.++.++|
T Consensus 510 ~dt-kqlVL-----------esGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478|consen 510 PDT-RQLVL-----------ESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred Ccc-ceeee-----------ecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeec
Confidence 000 00000 111122356789999999999999999999999852 24566777776
Q ss_pred ccc-------------ccchhhhcccee--EEecCCCHH
Q 019145 194 YIS-------------RIIEPLASRCAK--FRFKPLSEE 217 (345)
Q Consensus 194 ~~~-------------~l~~~l~~r~~~--i~~~~~~~~ 217 (345)
+.. .+++.|++||+. +-+.+++..
T Consensus 578 P~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 578 PIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred cccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 432 278999999994 345666543
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-09 Score=81.66 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=62.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC--------CCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPE--LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--------GYP 152 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 152 (345)
..++++||+|+|||++++.+++.+.... .....++.++++...+...+...+............... ...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 3589999999999999999999873100 003455555554433332222222221111111100000 000
Q ss_pred CCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.....+|+|||+|.+ +....+.|..+.+ ...+.+|+++.+
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 112359999999999 8888888888777 566778888765
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=93.61 Aligned_cols=145 Identities=22% Similarity=0.238 Sum_probs=90.5
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.++....-...+.|++.+++++.-.+.+|.. -|+||.|.||||||.+.+.+.+-+ ...+ ..
T Consensus 277 ~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a------Pr~v-yt 349 (682)
T COG1241 277 YDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA------PRGV-YT 349 (682)
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC------CceE-EE
Confidence 3444333445788999999998888866432 258999999999999999999876 1111 11
Q ss_pred ec--CCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------
Q 019145 120 NA--SDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------ 183 (345)
Q Consensus 120 ~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------ 183 (345)
++ +...+.. ..+..... ... ...+....++.++++|||+|.++.....++...||...
T Consensus 350 sgkgss~~GLTAav~rd~~tg--e~~----LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 350 SGKGSSAAGLTAAVVRDKVTG--EWV----LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred ccccccccCceeEEEEccCCC--eEE----EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeec
Confidence 11 1111110 00000000 000 01122334577899999999999999999999999632
Q ss_pred -CceEEEEecCccc-------------ccchhhhccceeE
Q 019145 184 -KVTRFFFICNYIS-------------RIIEPLASRCAKF 209 (345)
Q Consensus 184 -~~~~ii~~~n~~~-------------~l~~~l~~r~~~i 209 (345)
..+.+++++|+.. .++++++|||+.+
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLi 463 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLI 463 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCee
Confidence 2344555566543 2678899999954
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.8e-07 Score=91.29 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=114.8
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
.|..-..++-++.....+... ...+-++++||+|+||||++..+.+.. . ....+.++..+......+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~--~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N--NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C--CeEEEecCcccCCHHHHHHHHHH
Confidence 354556777788887777532 233457999999999999999988653 1 12223334444333222222232
Q ss_pred HHHHhhhcCCC-------CCC-C-------------CCCCCeEEEEEcCCCCCCHHH-HHHHHHHHhhcCCceEEEEecC
Q 019145 136 TFAAVAVGSGQ-------RRG-G-------------YPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 136 ~~~~~~~~~~~-------~~~-~-------------~~~~~~~iliiDE~~~l~~~~-~~~l~~~le~~~~~~~ii~~~n 193 (345)
.+......... ... . ......-+|||||+|.+.... .+.+..++...+++..+|+++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 22211100000 000 0 011345689999999997544 4567777777788888888775
Q ss_pred ccccc-chhhhccceeEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 019145 194 YISRI-IEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 194 ~~~~l-~~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~ 254 (345)
....+ ...+.-+...+.+. +++.+|...++...+ |..++++.+..+.+.|+|++-.+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQ 223 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHH
Confidence 43222 12232233344444 889999999986443 778999999999999999987654
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-08 Score=88.72 Aligned_cols=214 Identities=20% Similarity=0.182 Sum_probs=120.5
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
+..-.-|..+.|++.++..+.-.+..|. -.|+++.|.||+|||.+.++.+.-+ . .-++.++
T Consensus 338 ~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs------P-R~vYtsG 410 (764)
T KOG0480|consen 338 NLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS------P-RSVYTSG 410 (764)
T ss_pred HHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC------C-cceEecC
Confidence 3333445567799999888777775542 2359999999999999999987654 1 1111211
Q ss_pred C--CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------Cce
Q 019145 122 S--DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVT 186 (345)
Q Consensus 122 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~ 186 (345)
. ...+... ..++.-. ........+....++.+|.+|||+|++....+.+|++.||+-. ..+
T Consensus 411 kaSSaAGLTa--aVvkD~e--sgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARt 486 (764)
T KOG0480|consen 411 KASSAAGLTA--AVVKDEE--SGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNART 486 (764)
T ss_pred cccccccceE--EEEecCC--CCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchh
Confidence 1 1011000 0000000 0000001112234577899999999999989999999998532 344
Q ss_pred EEEEecCccc-------------ccchhhhccceeE--Eec-----------------------------CCCHHHHHHH
Q 019145 187 RFFFICNYIS-------------RIIEPLASRCAKF--RFK-----------------------------PLSEEVMSSR 222 (345)
Q Consensus 187 ~ii~~~n~~~-------------~l~~~l~~r~~~i--~~~-----------------------------~~~~~~~~~~ 222 (345)
.++.++|+.. .+..++.|||+.+ -+. +++.++++.+
T Consensus 487 SIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkY 566 (764)
T KOG0480|consen 487 SILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKY 566 (764)
T ss_pred hhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 4555565432 2567888888732 222 3445556665
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc--------CC--------CHHHH---HHHHHHHHHH-hCCCCCHHHHHHhhCC
Q 019145 223 VLHICNEEGLNLDAEALSTLSSIS--------QG--------DLRRA---ITYLQGAARL-FGSSITSKDLISVSGV 279 (345)
Q Consensus 223 l~~~~~~~~~~i~~~~~~~l~~~s--------~g--------~~r~~---~~~l~~~~~~-~~~~it~~~v~~~~~~ 279 (345)
|.... .-.-.++.++.+.|.+.. .| ..|.+ +.+-+..|.. ..++||.++++++...
T Consensus 567 i~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 567 IRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 54332 222336777777776542 11 13333 3333333322 2567999998877543
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-07 Score=70.25 Aligned_cols=128 Identities=16% Similarity=0.274 Sum_probs=73.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCC----------------CCCceeeeecCC-----------------ccchHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNASD-----------------DRGINVV 130 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~----------------~~~~~~~~~~~~-----------------~~~~~~~ 130 (345)
.+.++|+||+||||++..++..+...+. .++.++.+.... ....+.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence 3899999999999999999988843321 123333333111 0111222
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhhcc
Q 019145 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASR 205 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~~r 205 (345)
.+........+. ...+++||||+..+ +++..+.+-+.+....+ +|++- ++.+.+.+.++++
T Consensus 87 e~i~~~al~rA~-----------~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp---liatlHrrsr~P~v~~ik~~ 152 (179)
T COG1618 87 EEIAIPALRRAL-----------EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP---LIATLHRRSRHPLVQRIKKL 152 (179)
T ss_pred HHHhHHHHHHHh-----------hcCCEEEEecccchhhccHHHHHHHHHHhcCCCc---EEEEEecccCChHHHHhhhc
Confidence 212111111111 12369999999876 55666677777765322 44432 4556677888888
Q ss_pred ceeEE-ecCCCHHHHHHHHHH
Q 019145 206 CAKFR-FKPLSEEVMSSRVLH 225 (345)
Q Consensus 206 ~~~i~-~~~~~~~~~~~~l~~ 225 (345)
..++. +.|-+.+.+...+..
T Consensus 153 ~~v~v~lt~~NR~~i~~~Il~ 173 (179)
T COG1618 153 GGVYVFLTPENRNRILNEILS 173 (179)
T ss_pred CCEEEEEccchhhHHHHHHHH
Confidence 88666 555565644444433
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-07 Score=75.28 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=114.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC-CCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ilii 161 (345)
..++|.||+|.||+.+++.+..--......+..|+++||...++.......+........+.... .+....++.+++++
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 35999999999999999988654434444577999999988766655555444433222221111 12223456789999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCC-----------ceEEEEec-Cc------ccccchhhhccceeEEecCCCH----HHH
Q 019145 162 DEADSMTEDAQNALRRTMETYSK-----------VTRFFFIC-NY------ISRIIEPLASRCAKFRFKPLSE----EVM 219 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~-----------~~~ii~~~-n~------~~~l~~~l~~r~~~i~~~~~~~----~~~ 219 (345)
||+..+..+.+..|++.+++..- ...+|.-+ .+ ...+-..+..|.....|..|-. +++
T Consensus 289 deigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 99999999999999999986321 11122111 00 0112233334444333333321 222
Q ss_pred HH----HHHHHHHHhC--CCCCHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHhh
Q 019145 220 SS----RVLHICNEEG--LNLDAEALSTLSS-------ISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (345)
Q Consensus 220 ~~----~l~~~~~~~~--~~i~~~~~~~l~~-------~s~g~~r~~~~~l~~~~~~~-~~~it~~~v~~~~ 277 (345)
.. -+.+.+...| +.+.-++-..-.. ...||.|.+-..+...+..+ ++.||.+.|++-+
T Consensus 369 epnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei 440 (531)
T COG4650 369 EPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred CCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHH
Confidence 11 1223333333 4455555333222 23699999988888887776 5679988886543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-06 Score=88.73 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=105.9
Q ss_pred CCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee---eecCC--------
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE---LNASD-------- 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~---~~~~~-------- 123 (345)
+..+++++|.+..++.+..++... ....+-|+|++|+||||+|+++++.+.. .+....++. +....
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccchhhcccccc
Confidence 346788999999999998888543 2233799999999999999999988732 221111111 00000
Q ss_pred -ccc--hHHHHHHHHHHHHhhhcCCCCC------CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 124 -DRG--INVVRTKIKTFAAVAVGSGQRR------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 124 -~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
... .......+...... .+... ......++-+|++||++. ....+.+....+......++|+||..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~---~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDK---KDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccchhHHHHHHHHHHHhCC---CCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 000 00000111111000 00000 001123556899999864 34555565544443445677777765
Q ss_pred ccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHhcCCCHHHHH
Q 019145 195 ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD--AEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 195 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~~l~~~s~g~~r~~~ 254 (345)
...+.. . .-..++....++.++..+++.+.+-....+-+ .+....++++++|.+-.+.
T Consensus 334 ~~vl~~-~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 334 KHFLRA-H-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred HHHHHh-c-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 432211 0 01237888899999998888877644332211 2446678889999876543
|
syringae 6; Provisional |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-06 Score=78.89 Aligned_cols=137 Identities=17% Similarity=0.291 Sum_probs=82.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-cch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
.+||.||||+|||+||..+|..- +++|+.+-.+.. .+. ..+...+..... ++-
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYk--------------S~l 599 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYK--------------SPL 599 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhc--------------Ccc
Confidence 48999999999999999999886 788888754432 221 223333333222 234
Q ss_pred EEEEEcCCCCCC----------HHHHHHHHHHHhhcCCc--eEEEEecCcccccchhh--hccce-eEEecCCCH-HHHH
Q 019145 157 KIIILDEADSMT----------EDAQNALRRTMETYSKV--TRFFFICNYISRIIEPL--ASRCA-KFRFKPLSE-EVMS 220 (345)
Q Consensus 157 ~iliiDE~~~l~----------~~~~~~l~~~le~~~~~--~~ii~~~n~~~~l~~~l--~~r~~-~i~~~~~~~-~~~~ 220 (345)
.+|++|+++.+- .-....|+-++...|+. -.+|++|++...+...+ ..-+. .++.+.++. +++.
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~ 679 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLL 679 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHH
Confidence 599999998762 23445555566554443 45666665544333322 22333 678888765 7777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh
Q 019145 221 SRVLHICNEEGLNLDAEALSTLSSI 245 (345)
Q Consensus 221 ~~l~~~~~~~~~~i~~~~~~~l~~~ 245 (345)
+++. ..++ ++++..+.+++.
T Consensus 680 ~vl~----~~n~-fsd~~~~~~~~~ 699 (744)
T KOG0741|consen 680 EVLE----ELNI-FSDDEVRAIAEQ 699 (744)
T ss_pred HHHH----HccC-CCcchhHHHHHH
Confidence 7773 2232 556666666544
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-09 Score=95.07 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=69.5
Q ss_pred cccccHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc--cch
Q 019145 62 DVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--RGI 127 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~ 127 (345)
.+.|++.++..+.-.+-++. .-|+||.|.||+|||.+.+.+++-. ...+..++... .+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~~gL 97 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSAAGL 97 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTCCCC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCcccCCc
Confidence 56688888776654443322 1259999999999999999775433 11111221110 000
Q ss_pred --HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEec
Q 019145 128 --NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFIC 192 (345)
Q Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~ 192 (345)
...++.... ... ...+....++.+|++|||++.+..+....|.+.||... ..+.++.++
T Consensus 98 ta~~~~d~~~~--~~~----leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~ 171 (331)
T PF00493_consen 98 TASVSRDPVTG--EWV----LEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA 171 (331)
T ss_dssp CEEECCCGGTS--SEC----EEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE
T ss_pred cceeccccccc--eeE----EeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH
Confidence 000000000 000 00000112355799999999999999999999999632 345677777
Q ss_pred Cccc-------------ccchhhhccceeE
Q 019145 193 NYIS-------------RIIEPLASRCAKF 209 (345)
Q Consensus 193 n~~~-------------~l~~~l~~r~~~i 209 (345)
|+.. .+++.+.+||+.+
T Consensus 172 NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 172 NPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp --TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred hhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 6543 3678899999944
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-05 Score=68.19 Aligned_cols=235 Identities=14% Similarity=0.094 Sum_probs=130.1
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-----cchHHHH-HHHHH
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVR-TKIKT 136 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~ 136 (345)
.+.++.+-+.+.+.+... ...+.+.||..+|||++...+.+.+... +..++.++.... .+.+.+. .....
T Consensus 13 Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred ccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 445555666666666553 2358999999999999999999888443 444555554331 1111111 11111
Q ss_pred HHHhhhcCCC--------CCC-------------CCCCCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC-----C
Q 019145 137 FAAVAVGSGQ--------RRG-------------GYPCPPYKIIILDEADSMTE------DAQNALRRTMETYS-----K 184 (345)
Q Consensus 137 ~~~~~~~~~~--------~~~-------------~~~~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~-----~ 184 (345)
.... ..... ..+ .....++-||+|||+|.+.. +....|+.+.+... .
T Consensus 89 i~~~-L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 89 ISRQ-LKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHH-cCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 1100 00000 000 00123456999999998754 33444555555322 2
Q ss_pred ceEEEEecCcccccchhh-h---ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPL-A---SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l-~---~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
..++|++......+.... . ..+..+.+++.+.+|+...++ ..+..+++..++.|...++|.+.-.-..+..+
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455666654322222111 1 233468889999999988764 45677888899999999999997766555555
Q ss_pred HHHhCCCCCHHHHHHhhC-C--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 019145 261 ARLFGSSITSKDLISVSG-V--IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311 (345)
Q Consensus 261 ~~~~~~~it~~~v~~~~~-~--~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g 311 (345)
+. ..++.+++.+... . ...+.+..+.+.+ . +-......+..++..|
T Consensus 244 ~~---~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L-~-~~~~L~~~~~~il~~~ 292 (331)
T PF14516_consen 244 VE---EQITLEQLLEEAITDNGIYNDHLDRLLDRL-Q-QNPELLEAYQQILFSG 292 (331)
T ss_pred HH---ccCcHHHHHHHHHHhcccHHHHHHHHHHHH-c-cCHHHHHHHHHHHhCC
Confidence 53 3566665533321 1 1122344444444 1 2225566666666654
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=81.14 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=89.0
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~ 126 (345)
.+.|+..++.++.-.+..|.. -|+||+|.||||||.+.+-+++..... .+.+...+.+.+.....
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 567999999999888876532 249999999999999999888764100 00111111111110000
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n 193 (345)
-+ ...+.. ..+..-.++++|++|||+|++.......+...||.-+ ..+.+|.++|
T Consensus 530 --Pv---trEWTL-------EaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAan 597 (854)
T KOG0477|consen 530 --PV---TREWTL-------EAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAAN 597 (854)
T ss_pred --Cc---cceeee-------ccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecC
Confidence 00 000000 0111234577899999999998766666666666422 3456777776
Q ss_pred cc-------------cccchhhhccceeEE-----ecCCCHHHHHHHHH
Q 019145 194 YI-------------SRIIEPLASRCAKFR-----FKPLSEEVMSSRVL 224 (345)
Q Consensus 194 ~~-------------~~l~~~l~~r~~~i~-----~~~~~~~~~~~~l~ 224 (345)
+. -.+.+++++|+++++ +.|..++.+.+++-
T Consensus 598 PigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV 646 (854)
T KOG0477|consen 598 PIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVV 646 (854)
T ss_pred CCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHH
Confidence 52 136788999998653 34444555555543
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-06 Score=76.01 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCCccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
-..|+++.|.++.+..+...+.. ...+.++|.||||+|||++++.|++.+
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 34677999999999888777722 233447999999999999999999987
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=73.95 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=40.0
Q ss_pred cCcchhhh-hhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 46 QSSQPWVE-KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 46 ~~~~~~~~-~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...+|+.. ......+..+.+.......+..++... ..++++||+|||||+++.+++.+.
T Consensus 39 ~~~~p~~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 39 MGGVEAIGMARDSRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred hccCCccccchhhcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34455433 233334445556666666666677653 368999999999999999999964
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=77.22 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=32.9
Q ss_pred cccccHHHHHHHHHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 019145 62 DVAHQEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---~~~~~~lll~G~~G~GKT~la~~la~~l~~~ 109 (345)
.++|+++.++.+...+. .+..++++++|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999883 2334558999999999999999998887443
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-05 Score=70.26 Aligned_cols=203 Identities=19% Similarity=0.187 Sum_probs=118.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc-chHHHHHHHHHHHHhhhcCCCCC
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
...+.+.+..... .++++||.+|||||+++.+.+.... .++.++..+.. ......+....+......
T Consensus 26 ~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~------~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~----- 93 (398)
T COG1373 26 LPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE------EIIYINFDDLRLDRIELLDLLRAYIELKER----- 93 (398)
T ss_pred hHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc------ceEEEEecchhcchhhHHHHHHHHHHhhcc-----
Confidence 3444444433333 5799999999999999888877622 13444433321 222222333333222111
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc----ccchhhhccceeEEecCCCHHHHHH---
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS----RIIEPLASRCAKFRFKPLSEEVMSS--- 221 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~----~l~~~l~~r~~~i~~~~~~~~~~~~--- 221 (345)
+...+++||++.+.. -...+..+.+.... .++++++... .....+..|...+.+.|++-.|...
T Consensus 94 ------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 ------EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred ------CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 345999999998863 44445555554333 4555554333 3455666787899999999988865
Q ss_pred ----------HHHHHHHHhCCCC----CH------HH-----HHHHHHhcC-CCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 222 ----------RVLHICNEEGLNL----DA------EA-----LSTLSSISQ-GDLRRAITYLQGAARLFGSSITSKDLIS 275 (345)
Q Consensus 222 ----------~l~~~~~~~~~~i----~~------~~-----~~~l~~~s~-g~~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (345)
.+..+...-|.+- +. +. ...+++..+ -+...+...+..++...+..++...+..
T Consensus 165 ~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g~~~s~~~la~ 244 (398)
T COG1373 165 EEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIGSPISYSSLAR 244 (398)
T ss_pred cccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhcCCccCHHHHHH
Confidence 4566666656541 11 11 112333333 2555556666677777788899998888
Q ss_pred hhCCCCHHHHHHHHHHHH
Q 019145 276 VSGVIPPEVVEGLFAVCR 293 (345)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~ 293 (345)
.++......+...++++.
T Consensus 245 ~l~~is~~Ti~~Yl~~le 262 (398)
T COG1373 245 ELKGISKDTIRKYLSYLE 262 (398)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 884333666666666554
|
|
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=81.92 Aligned_cols=137 Identities=22% Similarity=0.318 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee-eecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 68 EVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE-LNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 68 ~~~~~l~~~l~~~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
.....|+.+++.... ..++|+||||||||+++.+|++.+. ..++. +|.....- +.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~------G~vi~fvN~~s~Fw-------Lq---------- 475 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK------GKVISFVNSKSHFW-------LQ---------- 475 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEECccccc-------cc----------
Confidence 345677778766543 3489999999999999999999982 22222 33211100 00
Q ss_pred CCCCCCCCCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcC-------------CceEEEEecCccc---ccchhhhcccee
Q 019145 146 QRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAK 208 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~-------------~~~~ii~~~n~~~---~l~~~l~~r~~~ 208 (345)
...+.+++++||+-.- ..-....|..+++..+ ...++|+|+|..- .-.+.|.+|...
T Consensus 476 ------pl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~ 549 (613)
T PHA02774 476 ------PLADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITV 549 (613)
T ss_pred ------hhccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEE
Confidence 1124469999999322 1223346777776542 1256888887432 234667788887
Q ss_pred EEecC-------------CCHHHHHHHHHHHHHHhCCC
Q 019145 209 FRFKP-------------LSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 209 i~~~~-------------~~~~~~~~~l~~~~~~~~~~ 233 (345)
++|+. ++....+.++++...+-.+.
T Consensus 550 f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 550 FEFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred EECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 77754 34577888888887765554
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=74.76 Aligned_cols=65 Identities=12% Similarity=0.287 Sum_probs=39.1
Q ss_pred CeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEec-Cc-ccccchhhhcc--ceeEEecCCCHHHHHHH
Q 019145 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFIC-NY-ISRIIEPLASR--CAKFRFKPLSEEVMSSR 222 (345)
Q Consensus 155 ~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~-n~-~~~l~~~l~~r--~~~i~~~~~~~~~~~~~ 222 (345)
..++++|||+..+ ++...+.+..+++. + ..+|.+- .. ...+.+.+.+| +.++.+.+-+.+.+..-
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~--~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~~ 166 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-N--KPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPEE 166 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-T--SEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-C--CcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhhh
Confidence 4569999999876 56778888999983 2 2244433 22 45678888888 55788887777666543
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.6e-07 Score=72.87 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH-------HHHHHhh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------KTFAAVA 141 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 141 (345)
....+...+..+ ....++.||||||||++++.+...+... +..++.+.+.. .....+.+.. ..+....
T Consensus 6 Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 6 QREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcC
Confidence 344444444443 2346899999999999999998877432 34444443332 2222232221 1111100
Q ss_pred hcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
... .........+..+|||||+.+++......|+..+.. ....+|+++++..
T Consensus 81 ~~~-~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 81 PNG-DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CCE-ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred Ccc-cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 000 000111134567999999999999998888888876 4567888886543
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-07 Score=93.52 Aligned_cols=52 Identities=48% Similarity=0.967 Sum_probs=48.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHH
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~l 98 (345)
...||.++|||.+|+|++||+++++.|+.++..+..+|++|+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 3458999999999999999999999999999999999999999999999643
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-05 Score=68.96 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=111.0
Q ss_pred ccccccHHHHHHHHHHHHcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH---------
Q 019145 61 KDVAHQEEVVRVLTNTLETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--------- 128 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------- 128 (345)
..+.+++..+..+...+.... .|+ ++|+|.+|||||.+++.+.+.. +.+.+.+++-+..+..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHHH
Confidence 456788999999998886643 344 6999999999999999999987 3333444432211111
Q ss_pred ----------------HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---HHHHHHHHHHHhhcCC-ceEE
Q 019145 129 ----------------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---EDAQNALRRTMETYSK-VTRF 188 (345)
Q Consensus 129 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---~~~~~~l~~~le~~~~-~~~i 188 (345)
.+...+..+...... ...+..-+|++|.+|.+. ......++++-+-.+. ...+
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~-------t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAA-------TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHh-------hccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 111122222221110 011234589999999885 3344555544443232 4455
Q ss_pred EEecCcccccchh-hhccce-eEEecCCCHHHHHHHHHHHHH-HhCCCCCHHHHHHH----HHhcCCCHHHHHHHHHHHH
Q 019145 189 FFICNYISRIIEP-LASRCA-KFRFKPLSEEVMSSRVLHICN-EEGLNLDAEALSTL----SSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 189 i~~~n~~~~l~~~-l~~r~~-~i~~~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~l----~~~s~g~~r~~~~~l~~~~ 261 (345)
+++.......... ....+. .++|+.++.+++..++.+--- +....+-...+..+ ...|+ |+..+...+...+
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~w 231 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAW 231 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 5555433332221 122222 789999999999999864321 11111112223333 34455 9999888888777
Q ss_pred HHh-----CCCCCHHH
Q 019145 262 RLF-----GSSITSKD 272 (345)
Q Consensus 262 ~~~-----~~~it~~~ 272 (345)
... ++.|+..+
T Consensus 232 pky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 232 PKYCEPITKGKIDPTD 247 (438)
T ss_pred HhhccccccCCCChhH
Confidence 544 33455555
|
|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=68.32 Aligned_cols=74 Identities=26% Similarity=0.419 Sum_probs=45.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE--LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
+.|+||||+|||++++.|++.+.... .....++..+..+ +....+ ....++++|
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------~~w~gY----------------~~q~vvi~D 56 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------KFWDGY----------------QGQPVVIID 56 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------chhhcc----------------CCCcEEEEe
Confidence 57999999999999999999884221 0112222212211 111111 133599999
Q ss_pred CCCCCCHH----HHHHHHHHHhhc
Q 019145 163 EADSMTED----AQNALRRTMETY 182 (345)
Q Consensus 163 E~~~l~~~----~~~~l~~~le~~ 182 (345)
|+...... ....++++++..
T Consensus 57 D~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 57 DFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred ecCccccccchHHHHHHHHHHhcC
Confidence 99887643 566677777643
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=72.80 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=89.9
Q ss_pred ccccHHHHHHHHHHH----HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHH
Q 019145 63 VAHQEEVVRVLTNTL----ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l----~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
+.|..+..+.+..|+ ..|....+++.||.|+|||.++...... ......++-.+.+|+.-....-.+.+....+.
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 566555555555555 4467777999999999999987665555 22222344555666654332222223222222
Q ss_pred HhhhcCCCCC---------------CCCCCCC-eEEEEEcCCCCCCH-HHHHHHHHHHhh---cCCceEEEEec---Ccc
Q 019145 139 AVAVGSGQRR---------------GGYPCPP-YKIIILDEADSMTE-DAQNALRRTMET---YSKVTRFFFIC---NYI 195 (345)
Q Consensus 139 ~~~~~~~~~~---------------~~~~~~~-~~iliiDE~~~l~~-~~~~~l~~~le~---~~~~~~ii~~~---n~~ 195 (345)
.......... .+....+ .-+.|+||+|.+.. ..|-.|.++++- ...++.+|.+| +..
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 2211100000 0111122 24666778998854 445566666652 22334444444 334
Q ss_pred cccchhhhccce---eEEecCCCHHHHHHHHHHHH
Q 019145 196 SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 196 ~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~ 227 (345)
+.+-+.+++|+. ++-+++.+-++...+.+...
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 567788999987 33445557788888877665
|
|
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=79.49 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=80.9
Q ss_pred cccccHHHHHHHHHHHHcCCCC------------cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 62 DVAHQEEVVRVLTNTLETANCP------------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~------------~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
.+.|+.++++++...+..|... |+||.|.|||.||.+.+-+-+-. ++-....+...+..-
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs--------PIaVYTSGKGSSAAG 403 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS--------PIAVYTSGKGSSAAG 403 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC--------ceEEEecCCCccccc
Confidence 5669999999999998776422 58999999999999999886643 222122211111100
Q ss_pred HH-HHHHHH--HHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecC
Q 019145 130 VR-TKIKTF--AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (345)
Q Consensus 130 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n 193 (345)
+. +.+..- .++-..+ +....++.+|++|||+|++..+..-++.+.||.-. ..+.++.++|
T Consensus 404 LTASV~RD~~tReFylEG----GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 404 LTASVIRDPSTREFYLEG----GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred ceeeEEecCCcceEEEec----ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcC
Confidence 00 000000 0000000 11123566899999999999988888888888532 2334444455
Q ss_pred ccc-------------ccchhhhccceeE
Q 019145 194 YIS-------------RIIEPLASRCAKF 209 (345)
Q Consensus 194 ~~~-------------~l~~~l~~r~~~i 209 (345)
+.. .+.+.+++||+.+
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmI 508 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDMI 508 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccEE
Confidence 432 1457888998843
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-05 Score=74.91 Aligned_cols=191 Identities=17% Similarity=0.171 Sum_probs=113.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
-.+|......+.++.....+... ....-++|+-|.|.||||++..++... .......-+.++.+++.......-.
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHH
Confidence 35566666677777776665422 222337999999999999999998733 2222333334444444333333323
Q ss_pred HHHHHHhhhcCCC-------CCCC--------------CCCCCeEEEEEcCCCCCCHHH-HHHHHHHHhhcCCceEEEEe
Q 019145 134 IKTFAAVAVGSGQ-------RRGG--------------YPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 134 ~~~~~~~~~~~~~-------~~~~--------------~~~~~~~iliiDE~~~l~~~~-~~~l~~~le~~~~~~~ii~~ 191 (345)
+.......+..+. +... ....++-.+|+||.|..+... ...+..+++..|+++.+|++
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 3222211111100 0000 012234589999999997654 45677778888999999999
Q ss_pred cCccccc-chhhhccceeEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 019145 192 CNYISRI-IEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (345)
Q Consensus 192 ~n~~~~l-~~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~ 252 (345)
|.....+ ...++=+...+++. .++.+|..+++... -+.+++...++.|.++++|-+..
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhcccHHHH
Confidence 8654432 23333333333332 35678888888433 24889999999999999996544
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=78.72 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-------cchHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-------RGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (345)
.+.+++|||++|+|||++.-.+...+..+.-....|..+-..-- ...+.+......+ .
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l---------------~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL---------------A 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH---------------H
Confidence 34569999999999999999999887332111111111100000 0000011111111 1
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhc-CCceEEEEecCcccc--------------cchhhhccceeEEecCC
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPL 214 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~-~~~~~ii~~~n~~~~--------------l~~~l~~r~~~i~~~~~ 214 (345)
....+|++||++--.....-.|.++++.. ...+++|+|+|.+.. ..+.|.++|.++++...
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 24469999999876554443333444332 246677888875432 23556778888877665
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=80.78 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=63.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh--------------------hhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--------------------AVG 143 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 143 (345)
..+|+|+|||||||++..+...+..........+.+.++.......+.+.+...... ..+
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 379999999999999999887763211111123444454433434443333211000 000
Q ss_pred CCCCCC-----CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 144 SGQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 144 ~~~~~~-----~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
...... ....-+.++|||||+.+++-.....|++.+ +..+++|++++...
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~Q 303 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRDQ 303 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchhh
Confidence 000000 001123479999999999988877777765 56788999986543
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.1e-06 Score=80.32 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH-------HHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (345)
.+.....+..... .+.++++|+||||||++++++...+..... ...++ +-++.......+.+. +..+.
T Consensus 325 ~~~Q~~Ai~~~~~---~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~-l~ApTg~AA~~L~e~~g~~a~Tih~lL 399 (720)
T TIGR01448 325 SEEQKQALDTAIQ---HKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVG-LAAPTGRAAKRLGEVTGLTASTIHRLL 399 (720)
T ss_pred CHHHHHHHHHHHh---CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEE-EEeCchHHHHHHHHhcCCccccHHHHh
Confidence 3444445554432 235799999999999999999887732210 12233 333332222222221 11111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..................++|||||+.+++......|++.+ +...++|++++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~~ 453 (720)
T TIGR01448 400 GYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDTD 453 (720)
T ss_pred hccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECccc
Confidence 11110000000001134679999999999988877777655 4567899998643
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=85.45 Aligned_cols=149 Identities=19% Similarity=0.298 Sum_probs=101.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC---CCCCeEEEE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY---PCPPYKIII 160 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ili 160 (345)
++|+-||+.+|||+++.-+++.. +-.|+.+|...-... .+.+..+.....++-....+. ...+..-|+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHTdl---qeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHTDL---QEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh------CccEEEecCcccchH---HHHhhceeecCCCceeeehhHHHHHHhcCcEEE
Confidence 48999999999999999999998 667888876543222 222222221111100000000 012345899
Q ss_pred EcCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEecCcc------cccchhhhccceeEEecCCCHHHHH
Q 019145 161 LDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNYI------SRIIEPLASRCAKFRFKPLSEEVMS 220 (345)
Q Consensus 161 iDE~~~l~~~~~~~l~~~le~~~--------------~~~~ii~~~n~~------~~l~~~l~~r~~~i~~~~~~~~~~~ 220 (345)
+||+...+.++.++|.+++++.. ++..+..|.|++ ..+.++++.|+-.++|...+.+++.
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle 1040 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELE 1040 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHH
Confidence 99999999999999999998532 344455555654 3478899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhc
Q 019145 221 SRVLHICNEEGLNLDAEALSTLSSIS 246 (345)
Q Consensus 221 ~~l~~~~~~~~~~i~~~~~~~l~~~s 246 (345)
.++..+| .+.+..+..|++..
T Consensus 1041 ~ILh~rc-----~iapSyakKiVeVy 1061 (4600)
T COG5271 1041 EILHGRC-----EIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHhccC-----ccCHHHHHHHHHHH
Confidence 9997655 46666666666543
|
|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-05 Score=65.52 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=90.1
Q ss_pred ccccHHHHHHH---HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 63 VAHQEEVVRVL---TNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 63 ~~g~~~~~~~l---~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
++--+++++.+ .+.+... ..|++|.|.+|+||+++++..+.-. +..++.+......+..+.++-++....
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~~ 82 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQP-RGHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKALQ 82 (268)
T ss_dssp ----HHHHHHHHHHHHHHCST-TEEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHcCC-CCCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHHH
Confidence 44455555544 4444443 3579999999999999999877765 677777777666666666666665544
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHH-----------------------------------------H-
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR-----------------------------------------R- 177 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~-----------------------------------------~- 177 (345)
..... ++..+++++|.+-......+.+. +
T Consensus 83 ~ag~~---------~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~ 153 (268)
T PF12780_consen 83 KAGIK---------GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEF 153 (268)
T ss_dssp HHHCS----------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHH
T ss_pred HHhcc---------CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHH
Confidence 33221 24457888886554322111111 1
Q ss_pred HHhhcCCceEEEEecCccc-------ccchhhhccceeEEecCCCHHHHHHHHHHHHHH
Q 019145 178 TMETYSKVTRFFFICNYIS-------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 178 ~le~~~~~~~ii~~~n~~~-------~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
+++....+..+|++-++.. ...|++.+.|.+..|.+.+.+-+..+-....+.
T Consensus 154 F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 154 FIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 1122235666776643322 246788889999999999999988887766554
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-05 Score=77.40 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceeeeecCCccchHHHHHHHHHHH---------
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDDRGINVVRTKIKTFA--------- 138 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 138 (345)
....+...+.. +..+|+|+|||||||++..+...+...... ...-+.+.++.......+.+.+....
T Consensus 150 Qk~A~~~al~~---~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~ 226 (586)
T TIGR01447 150 QKVAVALALKS---NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEAL 226 (586)
T ss_pred HHHHHHHHhhC---CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhh
Confidence 33344444442 347999999999999999988776321110 11123344444333333333322210
Q ss_pred ---------------HhhhcCCCCC-CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 ---------------AVAVGSGQRR-GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ---------------~~~~~~~~~~-~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.......... ......+.++|||||+.+++......|++.+ +..+++|++++..
T Consensus 227 ~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~~ 296 (586)
T TIGR01447 227 IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDKN 296 (586)
T ss_pred hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECChh
Confidence 0000000000 0001124679999999999988877777665 5678899998654
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-06 Score=64.95 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...||+|++|.|||||||++..+|...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 346789999999999999999999776
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8e-06 Score=76.59 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC
Q 019145 71 RVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (345)
Q Consensus 71 ~~l~~~l~~~~~~-~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
..++.++..-... .++|+||||||||+++.+|++.+ +..++.++++..... .....
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L------~G~vlsVNsPt~ks~--------FwL~p--------- 475 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC------GGKSLNVNCPPDKLN--------FELGC--------- 475 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc------CCeEEEeeCCcchhH--------HHhhh---------
Confidence 3344444443333 37999999999999999999998 344555665542221 10100
Q ss_pred CCCCCCeEEEEEcCCCCC-------CH----HHHHHHHHHHhhc-C-------------CceEEEEecCcccccchhhhc
Q 019145 150 GYPCPPYKIIILDEADSM-------TE----DAQNALRRTMETY-S-------------KVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 150 ~~~~~~~~iliiDE~~~l-------~~----~~~~~l~~~le~~-~-------------~~~~ii~~~n~~~~l~~~l~~ 204 (345)
..+..++++|++-.- ++ +....|+..++.. + .-.++|+|+|. ..++..+.-
T Consensus 476 ---l~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~ 551 (647)
T PHA02624 476 ---AIDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA 551 (647)
T ss_pred ---hhhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH
Confidence 113459999998432 11 2235677777654 1 11335667765 457788888
Q ss_pred cce-eEEecC
Q 019145 205 RCA-KFRFKP 213 (345)
Q Consensus 205 r~~-~i~~~~ 213 (345)
|+. ++.|.+
T Consensus 552 Rf~~~~~F~~ 561 (647)
T PHA02624 552 RFAKVLDFKP 561 (647)
T ss_pred HHHHhccccc
Confidence 876 677754
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=64.65 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=63.6
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhc------CCceEEEEecCcc---cccchhhhcc-ceeEEecCCCHHHHHHHHH
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYI---SRIIEPLASR-CAKFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~------~~~~~ii~~~n~~---~~l~~~l~~r-~~~i~~~~~~~~~~~~~l~ 224 (345)
.+.||+||++..-... .+.+...+.+. ..-..+||.|+.. ..+.+++-.+ +..+.+...+.+..++++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3579999998665433 23333222211 1234566666443 3355555554 4478899999999999998
Q ss_pred HHHHHhC-C-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 225 HICNEEG-L-------------------NLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 225 ~~~~~~~-~-------------------~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
..+.... . ......++..++.-||-+.++-...+++.
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8886531 1 12455566677777777766555555544
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=60.22 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHHH----HcCCC--Cc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCC
Q 019145 62 DVAHQEEVVRVLTNTL----ETANC--PH-MLFYGPPGTGKTTTALAIAHQLFGPELYK 113 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~~--~~-lll~G~~G~GKT~la~~la~~l~~~~~~~ 113 (345)
.+.||+-+.+.+.+.+ ....+ |- +-|+|++|||||.+++.||+.+...+..+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 5678876665555444 33322 21 46999999999999999999987554433
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-05 Score=77.89 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=91.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC--CCC-C-CC---CCCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQR-R-GG---YPCPP 155 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~---~~~~~ 155 (345)
..++|.|.||+|||+++.++|+.. +...+.+|-++....-++ + ....+.. +.. . .. ....+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL~DL---f---Gsd~Pve~~Gef~w~dapfL~amr~ 1611 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDLCDL---F---GSDLPVEEGGEFRWMDAPFLHAMRD 1611 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchHHHH---h---CCCCCcccCceeEecccHHHHHhhc
Confidence 359999999999999999999998 667777877664332211 1 1110000 000 0 00 01134
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEecCc------ccccchhhhccceeEEecCCC
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNY------ISRIIEPLASRCAKFRFKPLS 215 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~--------------~~~~ii~~~n~------~~~l~~~l~~r~~~i~~~~~~ 215 (345)
..-|++||+...+..+.+.|...++.+. ++.++..+-|+ ...+++.+..|+.++.+..++
T Consensus 1612 G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt 1691 (4600)
T COG5271 1612 GGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLT 1691 (4600)
T ss_pred CCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccc
Confidence 5699999999999999999998887543 34454444443 345899999999999999999
Q ss_pred HHHHHHHHHHH
Q 019145 216 EEVMSSRVLHI 226 (345)
Q Consensus 216 ~~~~~~~l~~~ 226 (345)
.+++..+....
T Consensus 1692 ~dDi~~Ia~~~ 1702 (4600)
T COG5271 1692 TDDITHIANKM 1702 (4600)
T ss_pred cchHHHHHHhh
Confidence 99999887543
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.9e-05 Score=66.36 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCC-----CCCC
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRR-----GGYP 152 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~ 152 (345)
...+.|.||+|+||||++..+|.... ...-....++..+........ .+..+... +......+ ....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E----QLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE----QLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH----HHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 34589999999999998888888875 233334455555554322222 22222111 11100000 0001
Q ss_pred CCCeEEEEEcCCCCCC--HHHHHHHHHHHhhc-CCceEEEEecCcccccchhhhccce-----eEEecCCCHHHHHHHHH
Q 019145 153 CPPYKIIILDEADSMT--EDAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~--~~~~~~l~~~le~~-~~~~~ii~~~n~~~~l~~~l~~r~~-----~i~~~~~~~~~~~~~l~ 224 (345)
...+++|+||=+++=. ......|..++... +-.+.+++.++....-.+++..++. .+-|.++++.....-+-
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~ 358 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLF 358 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHH
Confidence 2356799999887643 34456666666643 3455667766666555555555543 34555555543333333
Q ss_pred HHHHH
Q 019145 225 HICNE 229 (345)
Q Consensus 225 ~~~~~ 229 (345)
..+..
T Consensus 359 s~~~e 363 (407)
T COG1419 359 SLMYE 363 (407)
T ss_pred HHHHH
Confidence 33333
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=72.81 Aligned_cols=124 Identities=18% Similarity=0.263 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHH--HHHHHHHHHhhhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV--RTKIKTFAAVAVG 143 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 143 (345)
|..+...+.+.+....+.++++.||.|||||++++++.+.+... + ..+.+.++.......+ ...+..+...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~-~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---G-KKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---c-ceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 45566666666666666678999999999999999999887331 1 1222222221111111 0111111111111
Q ss_pred CCCC---------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh---------cCCceEEEEecC
Q 019145 144 SGQR---------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---------YSKVTRFFFICN 193 (345)
Q Consensus 144 ~~~~---------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~---------~~~~~~ii~~~n 193 (345)
.... .........++|||||+.+++......+-..+.. +-+...+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 82 NNEKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred ccccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 1100 0011223457999999999998877766544431 223456677664
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.001 Score=59.62 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcC--CceEEEEecCccc---------------ccchhhhcc-ce-eEEecCCC
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYS--KVTRFFFICNYIS---------------RIIEPLASR-CA-KFRFKPLS 215 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~--~~~~ii~~~n~~~---------------~l~~~l~~r-~~-~i~~~~~~ 215 (345)
.+-||+|||+|+++++....+++.+...- +++.+|++.+... ........+ ++ .+.+++++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 45689999999998876666665554322 5677777764321 111222222 23 57889999
Q ss_pred HHHHHHHHHHHHHH
Q 019145 216 EEVMSSRVLHICNE 229 (345)
Q Consensus 216 ~~~~~~~l~~~~~~ 229 (345)
..++..++...+..
T Consensus 252 ~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 252 PSDLERYLNELLES 265 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887554
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=72.59 Aligned_cols=147 Identities=12% Similarity=0.182 Sum_probs=75.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCC-----CCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRR-----GGY 151 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~ 151 (345)
..++|+||+|+||||++..+|..+... ......++..++........ +..+... +....... ...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 347999999999999999999876321 12233344444322212111 2222211 11000000 001
Q ss_pred CCCCeEEEEEcCCCCCCHH--HHHHHHHHHhhcCC--ceEEEEecCcccccchhhhccc-----eeEEecCCCHHHHHHH
Q 019145 152 PCPPYKIIILDEADSMTED--AQNALRRTMETYSK--VTRFFFICNYISRIIEPLASRC-----AKFRFKPLSEEVMSSR 222 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~--~~~~l~~~le~~~~--~~~ii~~~n~~~~l~~~l~~r~-----~~i~~~~~~~~~~~~~ 222 (345)
...++++|+||.++..+.+ ....+..+++.... .+.+++.++....-...+..++ .-+-|..++...-...
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~ 330 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGN 330 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchH
Confidence 1246789999999988754 34566666664332 4555555543322222333322 2455666666555555
Q ss_pred HHHHHHHhCCC
Q 019145 223 VLHICNEEGLN 233 (345)
Q Consensus 223 l~~~~~~~~~~ 233 (345)
+-..+...+++
T Consensus 331 ~l~~~~~~~~P 341 (388)
T PRK12723 331 LISLIYEMRKE 341 (388)
T ss_pred HHHHHHHHCCC
Confidence 54544444443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=63.89 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=51.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC-Cccc-----------------hHHHHHHHHHHHHhhhcCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRG-----------------INVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 146 (345)
.+++||+|+||||++..++..+... +..++.+.+. +.+. .....+.+..+..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~------- 74 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE------- 74 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-------
Confidence 5899999999999999988877332 1222222211 1000 0001111111111
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
...++++|+|||++.++.+....+.+.+.. ....+|+++
T Consensus 75 -----~~~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tg 113 (190)
T PRK04296 75 -----EGEKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYG 113 (190)
T ss_pred -----hCCCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEe
Confidence 113567999999999987765556666543 345566665
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00023 Score=59.97 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=72.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc---------------cchHHHHHHHHHHHHhhhcCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD---------------RGINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
++++.|++|+|||+++..+...+.. .+ ..++-+..... ...+.+...+............+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~-~f--~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH-KF--DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc-cC--CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999877622 11 11111111110 001111111111111000000000
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh-cCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~-~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
......+..+||+||+..-. -..+.+..++.. +.-++.+|+.+-....+++.++.-...+-+-+.+..++..+++.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRN 168 (241)
T ss_pred cccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHh
Confidence 01112456799999986521 122335555543 23467788888888889999988777444335677776655543
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0002 Score=64.90 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=42.7
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCC---CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANC---PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~---~~lll~G~~G~GKT~la~~la~~l 106 (345)
-|....+++|++.....+...+..... ..+.|+||+|||||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 566788999999999999998865322 236999999999999999999876
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-05 Score=60.13 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..+++||+||+...-. -..+.+++++++.|....+|+|++.. ++.+....+
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4678999999876521 23456888999999999999999763 445555554
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.5e-05 Score=61.73 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEecCcc--cccchhhhccce--eEEecCCCHHHHHHHHHHHH
Q 019145 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYI--SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 155 ~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~n~~--~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~ 227 (345)
+.+++++||+..+ .....+.+..+++. ...+|++++.. ....+.+..+.. ++++.+-+.+++...+..+.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 4579999997654 34456667777743 23566666653 235666766654 88999999999988887654
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=67.28 Aligned_cols=146 Identities=19% Similarity=0.175 Sum_probs=70.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCCC-----CCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRRG-----GYPCP 154 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~ 154 (345)
.++|.||+|+||||++..++..+. ... +..+..+++...+... .+.+..+... +........ .....
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGA--VEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHH--HHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 479999999999999999988763 222 2234434433221110 1112111110 000000000 00123
Q ss_pred CeEEEEEcCCCCCC--HHHHHHHHHHHhh--cCCceEEEEecCcccccchhhhccce-----eEEecCCCHHHHHHHHHH
Q 019145 155 PYKIIILDEADSMT--EDAQNALRRTMET--YSKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 155 ~~~iliiDE~~~l~--~~~~~~l~~~le~--~~~~~~ii~~~n~~~~l~~~l~~r~~-----~i~~~~~~~~~~~~~l~~ 225 (345)
.+++|+||.....+ ....+.|..+++. .+..+.+++.++....-...+..++. .+-|..++...-..-+..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~ 378 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILS 378 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccccccccHHHH
Confidence 56899999987764 3455667777762 22344566665544333333333322 344555554333333333
Q ss_pred HHHHhCCC
Q 019145 226 ICNEEGLN 233 (345)
Q Consensus 226 ~~~~~~~~ 233 (345)
.+...+++
T Consensus 379 ~~~~~~lP 386 (424)
T PRK05703 379 LLIESGLP 386 (424)
T ss_pred HHHHHCCC
Confidence 33444443
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=75.59 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH-------HHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (345)
.+.....+...+... ...+|+|+||||||++++++...+... +..+..+.+ .......+.+. +..+.
T Consensus 354 s~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~Ap-Tg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 354 SEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAAL-SGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeC-cHHHHHHHHhccCCceeeHHHHH
Confidence 344555555544332 347999999999999999998776322 233443322 21111111110 11110
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.. . ........+.++|||||+.+++......|+..... ....+|++++..
T Consensus 428 ~~-~----~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~~ 477 (744)
T TIGR02768 428 YA-W----ANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDPE 477 (744)
T ss_pred hh-h----ccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECChH
Confidence 00 0 01111234678999999999998888887776543 356788888543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00073 Score=59.86 Aligned_cols=48 Identities=21% Similarity=0.085 Sum_probs=39.3
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGL---NLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
.+.+++++.+|+..++..+....-+ ..++...+.+.-.++||+|.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999998875443 35677788888889999998753
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.99 E-value=6e-05 Score=59.98 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.98 E-value=4e-05 Score=59.85 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=58.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.+++|....+.++++++++.++|..+++..++++.+.|.||..++..|..++|.++.-+
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k 65 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYK 65 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999987533
|
It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.7e-05 Score=61.76 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=71.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC-----------CCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----------GYP 152 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 152 (345)
.++|.||+|+||||++-.+|..+... .....++..+.......+.++..-+.+ ..+........ ...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l-~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEIL-GVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHH-TEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHh-ccccchhhcchhhHHHHHHHHHHHh
Confidence 36999999999999999999988544 333444444433322222222211111 11100000000 000
Q ss_pred CCCeEEEEEcCCCCCCH--HHHHHHHHHHhhc-CCceEEEEecCcccccchhhhcc---c--eeEEecCCCHHHHHHHHH
Q 019145 153 CPPYKIIILDEADSMTE--DAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASR---C--AKFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~--~~~~~l~~~le~~-~~~~~ii~~~n~~~~l~~~l~~r---~--~~i~~~~~~~~~~~~~l~ 224 (345)
..++++|+||=....+. +..+.+.++++.. +..+.+++.++....-...+..+ + .-+-|.++++..-..-+-
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 12457999999887763 3455666666553 34555666554433322222222 1 245566666544433333
Q ss_pred HHHHHhCC
Q 019145 225 HICNEEGL 232 (345)
Q Consensus 225 ~~~~~~~~ 232 (345)
..+...+.
T Consensus 161 ~~~~~~~~ 168 (196)
T PF00448_consen 161 SLAYESGL 168 (196)
T ss_dssp HHHHHHTS
T ss_pred eHHHHhCC
Confidence 33344333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=69.37 Aligned_cols=95 Identities=26% Similarity=0.261 Sum_probs=51.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHH----------Hh-hhcCCCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFA----------AV-AVGSGQRRGGY 151 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~ 151 (345)
.+++.|.||||||.++-.+++.+. ........++..+.. ....++..+.... .. ..-........
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~---l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP---LRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch---HHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 369999999999999999999981 111112222222222 1222222222211 00 00000000112
Q ss_pred CCCCeEEEEEcCCCCCCHH--------HHHHHHHHHhh
Q 019145 152 PCPPYKIIILDEADSMTED--------AQNALRRTMET 181 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~--------~~~~l~~~le~ 181 (345)
....+++|||||+|.+... ..+.|..++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 3457889999999999762 24567777766
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=73.73 Aligned_cols=191 Identities=12% Similarity=0.027 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHHHhhh
Q 019145 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (345)
+|++..++.+.+.+.......+=++|..|+||||+++.+.+... .....+..++..-..+..........+..+.....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999887776789999999999999999998874 22222222222222221122222222222111111
Q ss_pred cCCCC--------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCC
Q 019145 143 GSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214 (345)
Q Consensus 143 ~~~~~--------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~ 214 (345)
..... .......++-+|++||+-.= ...+.+...+-.......+++||....--..++ .....++..-+
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m-~~~~~~~v~~L 317 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM-GVDYPIEVECL 317 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccc-cCCcccccccc
Confidence 00000 00112345679999997532 122222222212223467888886533211112 22445677778
Q ss_pred CHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 215 SEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+.++....+++.+-..... --++....+++.|+|-|-. ++.+-
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLA-l~viG 363 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLA-LNVLG 363 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHH-HHHHH
Confidence 8888888887766322111 1367788888999996655 44443
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=97.94 E-value=6e-05 Score=61.32 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 65 HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~-~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.|.+++..+.+.+... ..++++|.+|+|+|||.++-.++.++.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 4677778888887776 566799999999999999998777763
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=65.06 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
..+|||||++++++.....++.-+ ..++.+|++++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 479999999999988766665444 567788888754
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=58.36 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
-++|+|+||+||||+++.+++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4799999999999999999999843
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.7e-05 Score=66.77 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||++..++..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999876
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=73.67 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH-------HHHHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-------TKIKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 138 (345)
.+.....+..++.... ..+++|++||||||+++.+...+... +..++.+..+. .....+. ..+..+.
T Consensus 348 s~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApTG-kAA~~L~e~tGi~a~TI~sll 421 (988)
T PRK13889 348 SGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALSG-IAAENLEGGSGIASRTIASLE 421 (988)
T ss_pred CHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCcH-HHHHHHhhccCcchhhHHHHH
Confidence 3444445554443322 46899999999999998877655221 23344332211 1111111 1112211
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
... ........+.++|||||+.+++......|++.... ....+|++++..
T Consensus 422 ~~~-----~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~~ 471 (988)
T PRK13889 422 HGW-----GQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDPQ 471 (988)
T ss_pred hhh-----cccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCHH
Confidence 100 00111234567999999999999988888877654 457788888543
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=56.43 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
.++++||+||+...-. =..+.++.+++..|+.+-+|+|+... ++.+....+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4678999999863211 01235778888889999999999754 445555555
|
Alternate name: corrinoid adenosyltransferase. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=57.28 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999988888743
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=61.85 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=62.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-HHHHHHHhhhcCCCC---CCCCCCCCeEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-KIKTFAAVAVGSGQR---RGGYPCPPYKI 158 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~i 158 (345)
..++|||+-|.|||+|.-.+.+.+-.+..... ....... .-+...... +...+ ......++.+|
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~-----------HFh~FM~~vH~~l~~l~-g~~dpl~~iA~~~~~~~~v 133 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERKRRL-----------HFHRFMARVHQRLHTLQ-GQTDPLPPIADELAAETRV 133 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCccccccc-----------cHHHHHHHHHHHHHHHc-CCCCccHHHHHHHHhcCCE
Confidence 45999999999999999999988732211111 1111111 111111111 00000 00001245679
Q ss_pred EEEcCCCCCCHHHHHHHHHHHhhc-CCceEEEEecCcccc-----------c---chhhhccceeEEecCC
Q 019145 159 IILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYISR-----------I---IEPLASRCAKFRFKPL 214 (345)
Q Consensus 159 liiDE~~~l~~~~~~~l~~~le~~-~~~~~ii~~~n~~~~-----------l---~~~l~~r~~~i~~~~~ 214 (345)
|++||++--.....-.|-++++.. ...+.++.|+|.... + .+.|.++|.++.+..+
T Consensus 134 LCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 134 LCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred EEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 999998765544444444444432 246667777775421 2 2345567776655444
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-05 Score=58.33 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999887
|
... |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00082 Score=62.81 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||++..|+..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999998875
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-05 Score=60.11 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
|
... |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0006 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
|
|
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=66.98 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhc---CCCCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLF---GPELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~ 126 (345)
.+.|++.+++++.-.+-.|.. =|+|+.|.|.+.||.|.+.+.+..- ...+.+..=+.+.+.-...
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 567999999988877755321 1489999999999999999988651 0011111111111111011
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n 193 (345)
.+.-...++. +.--.++++|++|||+|+++.-...++.++||... ..+.++.++|
T Consensus 382 ~eTGERRLEA------------GAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 382 QETGERRLEA------------GAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred cccchhhhhc------------CceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111111111 11223577899999999999888889999998532 4567777776
Q ss_pred ccc-------------ccchhhhcccee--EEecCCCH
Q 019145 194 YIS-------------RIIEPLASRCAK--FRFKPLSE 216 (345)
Q Consensus 194 ~~~-------------~l~~~l~~r~~~--i~~~~~~~ 216 (345)
+.. .+++.|++||+. +-....+.
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~ 487 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDA 487 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccc
Confidence 532 278999999993 33444443
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=58.78 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
+.+++||+||+-..-. =..+.++.+++..|..+-+|+|++.. ++.|....+
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~---p~~Lie~AD 167 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA---PRELIEAAD 167 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4678999999865422 12345778888889999999999653 344555444
|
|
| >PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00043 Score=56.98 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=63.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~ 164 (345)
++|.|+-|+|||++.+.|.....+.. +... ...+... .+.. .-++.+||+
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~--------~~~~--~~kd~~~-~l~~-------------------~~iveldEl 104 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS--------INDF--DDKDFLE-QLQG-------------------KWIVELDEL 104 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc--------cccC--CCcHHHH-HHHH-------------------hHheeHHHH
Confidence 69999999999999999976642211 1111 1112221 1111 128999999
Q ss_pred CCCCHHHHHHHHHHHhh---------------cCCceEEEEecCcccccchh-hhccceeEEecC
Q 019145 165 DSMTEDAQNALRRTMET---------------YSKVTRFFFICNYISRIIEP-LASRCAKFRFKP 213 (345)
Q Consensus 165 ~~l~~~~~~~l~~~le~---------------~~~~~~ii~~~n~~~~l~~~-l~~r~~~i~~~~ 213 (345)
+.+.+...+.|..++.. .+..+++|.++|..+-+.+. =-+|+..+.+..
T Consensus 105 ~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 105 DGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 99998888888888752 23456677888876644433 345777777665
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0004 Score=55.71 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||||+||||+++.+++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=64.20 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||++..++..+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999998773
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00075 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00044 Score=62.19 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+.|.||+|+||||++..|+..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3479999999999999999998874
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0004 Score=57.11 Aligned_cols=35 Identities=37% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+...+-+....|.|+.|||||||||+.+-+++-+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 45555566667799999999999999999999873
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=73.02 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=62.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-------HHHHHHHhhhcCCCCCCCCCCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFAAVAVGSGQRRGGYPCPP 155 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 155 (345)
...++.|++||||||+++.+...+... +..++.+..+. .....+.+ .+..+... . ..+......
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~---G~~V~g~ApTg-kAA~~L~e~~Gi~a~TIas~ll~-~----~~~~~~l~~ 468 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAA---GYRVVGGALAG-KAAEGLEKEAGIQSRTLSSWELR-W----NQGRDQLDN 468 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCcH-HHHHHHHHhhCCCeeeHHHHHhh-h----ccCccCCCC
Confidence 347999999999999999998765321 34444443221 11112211 11111100 0 011122345
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..+|||||+.+++......|++.... ....+|++++..
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~~ 506 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGDPE 506 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCHH
Confidence 67999999999999999988888864 456788888643
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.2e-05 Score=63.69 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=19.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..++|||+||+|||++|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 3489999999999999999874
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=53.42 Aligned_cols=24 Identities=42% Similarity=0.855 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.||||+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999887
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00037 Score=56.81 Aligned_cols=142 Identities=24% Similarity=0.264 Sum_probs=66.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~ 164 (345)
++|+||+|||||.++-++|+.. +.+++..+.-.... ....+++.+......+-++ +++||-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~------g~pvI~~Driq~y~------------~l~v~Sgrp~~~el~~~~R-iyL~~r 64 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT------GAPVISLDRIQCYP------------ELSVGSGRPTPSELKGTRR-IYLDDR 64 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--------EEEEE-SGGG-G------------GGTTTTT---SGGGTT-EE-EES---
T ss_pred EEEECCCCCChhHHHHHHHHHh------CCCEEEecceeccc------------ccccccCCCCHHHHcccce-eeeccc
Confidence 5899999999999999999998 66676655322111 1111111111111122334 777764
Q ss_pred CC----CC-HHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc-------ceeEEecCCCHHHHHHHHHHHHHHhCC
Q 019145 165 DS----MT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR-------CAKFRFKPLSEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 165 ~~----l~-~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r-------~~~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (345)
.. ++ .+..+.|...+.+.....-+|+-+.+...+..-..+. ..+..+.-++.+......+++.++.-.
T Consensus 65 ~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 65 PLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp -GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred cccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 32 23 3455677777877776667777765544332222221 224555556666666666666654322
Q ss_pred C--CCHHHHHHHHHh
Q 019145 233 N--LDAEALSTLSSI 245 (345)
Q Consensus 233 ~--i~~~~~~~l~~~ 245 (345)
+ -.+..++.++..
T Consensus 145 p~~~~~Sll~EL~~l 159 (233)
T PF01745_consen 145 PDSSGPSLLEELVAL 159 (233)
T ss_dssp --SSS--HHHHHHHH
T ss_pred CCCCCCcHHHHHHHH
Confidence 1 224455555544
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0046 Score=62.31 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcC--C--ceEEEEecCcccccchhhhc--cceeEEecCCCHHHHHHHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYS--K--VTRFFFICNYISRIIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~--~--~~~ii~~~n~~~~l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
+-|+|+||+|..+....+.|-.++.... . ...+..+.+....+....++ +...+.+.|++..+....+...+..
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 5699999999999998888888887654 0 00111111222222222222 2348999999999999999888743
Q ss_pred hCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 230 ~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.....+..+.+.+.+.||+=-+...+..+..
T Consensus 235 -~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 235 -TKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred -cccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 34577888999999999988776666655543
|
|
| >PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=64.02 Aligned_cols=132 Identities=23% Similarity=0.293 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCC
Q 019145 70 VRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
+..++.+++.-...+ ++|+|||+||||.++..+.+-+ ...++.+..+.. .+-..+
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl------~GkViSf~Ns~S-----------hFWLqP------- 304 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL------KGKVISFVNSKS-----------HFWLQP------- 304 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH------TSEEE-GGGTTS-----------CGGGGG-------
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh------CCEEEEecCCCC-----------cccccc-------
Confidence 467777887655555 7999999999999999999988 334443322211 011111
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHH-HHHHHHHhhcC-------------CceEEEEecCcc---cccchhhhccceeEEe
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQ-NALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKFRF 211 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~-~~l~~~le~~~-------------~~~~ii~~~n~~---~~l~~~l~~r~~~i~~ 211 (345)
..+.++-++||+-.--=+-. ..|++.++..+ ...++++|+|.. +.-..-|.+|...++|
T Consensus 305 ----L~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F 380 (432)
T PF00519_consen 305 ----LADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEF 380 (432)
T ss_dssp ----GCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE-
T ss_pred ----hhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEc
Confidence 12446889998743211111 23455665322 123467777643 2335678889888888
Q ss_pred cCC-------------CHHHHHHHHHHHHHH
Q 019145 212 KPL-------------SEEVMSSRVLHICNE 229 (345)
Q Consensus 212 ~~~-------------~~~~~~~~l~~~~~~ 229 (345)
+.+ +....+.++++...+
T Consensus 381 ~n~~P~d~~G~P~y~ltd~~WksFF~rlw~~ 411 (432)
T PF00519_consen 381 PNPFPLDENGNPVYELTDANWKSFFRRLWSQ 411 (432)
T ss_dssp -S-S-BSTTSSBSS---HHHHHHHHHHHTCC
T ss_pred CCccccCCCCCeeEEeccChHHHHHHHHHHh
Confidence 653 235555666555543
|
The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00045 Score=59.68 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.3
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+...+++|.||+|+||||+.+.++..+
T Consensus 107 ~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 107 RNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred hCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 44555689999999999999999999887
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00018 Score=49.27 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=17.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++.||||+|||+++..++..+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367799999999966655555553
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00069 Score=59.00 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=35.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.+++++.-.......+.+.+... ...+++++||+|+||||+++++...+.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 3446667765444445555555443 234699999999999999999998873
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00094 Score=57.22 Aligned_cols=191 Identities=21% Similarity=0.144 Sum_probs=100.1
Q ss_pred CCccccccHHH---HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 59 QVKDVAHQEEV---VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 59 ~~~~~~g~~~~---~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
...++++-+.. +..+...-+.+. ...++|.+|.|||+.++.+++.. .+.+-+.++.......+...+.
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHH
Confidence 33455554333 333333333333 46999999999999999998764 2223233322222111111110
Q ss_pred HHHHhhhcCCC-----CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc--------cccchhh
Q 019145 136 TFAAVAVGSGQ-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRIIEPL 202 (345)
Q Consensus 136 ~~~~~~~~~~~-----~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~--------~~l~~~l 202 (345)
........... ..........+.+++||++.++...++.|....+... +-+++++++. ......+
T Consensus 141 ~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~prL~~~l~~~~~~~~rl 218 (297)
T COG2842 141 AAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPRLFKVLRRPEDELSRL 218 (297)
T ss_pred HHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChHHHhccccchHHHHHH
Confidence 00000000000 0000012345799999999999999999999988754 3355565443 1112222
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~ 264 (345)
.+|.. .+.-..++.++...+...... ...++.+..+....+|++|.+-..+.-+...+
T Consensus 219 ~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a 279 (297)
T COG2842 219 YSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGTA 279 (297)
T ss_pred HHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhhh
Confidence 33322 111122333444444322221 15677788888888999999888877666544
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00046 Score=56.53 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.2
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la~~l 106 (345)
.++++.||+|+|||+.+ ..+.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 56999999999999944 4444444
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00092 Score=60.82 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=68.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC-------CCCCCCCCeE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-------RGGYPCPPYK 157 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 157 (345)
++|.||+|+||||++..++....... +..+.-+++...+.. . ...+..+.....-.... ........++
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~a-A-~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIA-A-IEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhh-H-HHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 68999999999999999997652111 122222222211111 0 11111111110000000 0000113567
Q ss_pred EEEEcCCCCCC--HHHHHHHHHHHhhc----CCceEEEEecCcccccchhhhccce-----eEEecCCCHHHHHHHHHHH
Q 019145 158 IIILDEADSMT--EDAQNALRRTMETY----SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVLHI 226 (345)
Q Consensus 158 iliiDE~~~l~--~~~~~~l~~~le~~----~~~~~ii~~~n~~~~l~~~l~~r~~-----~i~~~~~~~~~~~~~l~~~ 226 (345)
+|+||=+...+ ....+.|..++... +..+.+++.++....-...+.+++. -+-|.+++...-..-+-..
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i 381 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLEL 381 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHH
Confidence 99999766653 45566666666432 2245555555443322223333222 4566666665544444444
Q ss_pred HHHhCCC
Q 019145 227 CNEEGLN 233 (345)
Q Consensus 227 ~~~~~~~ 233 (345)
+...+++
T Consensus 382 ~~~~~lP 388 (432)
T PRK12724 382 ADTYSKS 388 (432)
T ss_pred HHHHCCC
Confidence 4444444
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
-++|+|+||+||||+++.+++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999987
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=56.06 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.+++.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=59.10 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..++|+|+||+|||++++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=54.25 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999986
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=61.43 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999988
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00068 Score=62.61 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||++..+|..+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 479999999999999999998874
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00086 Score=70.48 Aligned_cols=125 Identities=21% Similarity=0.201 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceeeeecCCccchHHHH------HHHHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVR------TKIKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 138 (345)
.+.....+..++.... ..++|.|.+||||||+++.+...+.. ....+..++-+.+ .......+. ..+..+.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAP-TgkAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGP-THRAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEec-hHHHHHHHHHhCchHhhHHHHh
Confidence 4455555665565432 35799999999999999888765421 0011223333322 211111111 1111111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..... ..........+..++||||+.+++...+..|+..++. ...++|++++..
T Consensus 915 ~~~~~-~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~~ 968 (1623)
T PRK14712 915 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDTD 968 (1623)
T ss_pred ccccc-hhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcchh
Confidence 11000 0000111123467999999999999998888888864 346789998644
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0078 Score=53.83 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....|..+++.+ .+++++|++|+||||+++++...+
T Consensus 149 ~~~~L~~~v~~~--~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 149 IKEFLEHAVISK--KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHhhC
Confidence 334444455444 479999999999999999999887
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=58.82 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=26.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+++|+|.||+||||+++.+++.+ +..++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l------~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL------SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEhh
Confidence 58999999999999999999998 56665544
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0025 Score=63.15 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=107.0
Q ss_pred cccccc-HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecC----CccchHHHH
Q 019145 61 KDVAHQ-EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNAS----DDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~-~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~----~~~~~~~~~ 131 (345)
+-++|. ++-++.+.+.+......|-+|.|.||+|||.++..+++.....+ .....++.++-. .......+.
T Consensus 186 dPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E 265 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFE 265 (898)
T ss_pred CCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHH
Confidence 445576 77778888888877778899999999999999999999875322 122334434332 112223344
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEecCc-----cccc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY-----ISRI 198 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~n~-----~~~l 198 (345)
..++........ .+..-|+++||++.+.. +..+.|...+.. .. ..+|-+++. .-.-
T Consensus 266 ~rlk~l~k~v~~---------~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-g~-l~~IGatT~e~Y~k~iek 334 (898)
T KOG1051|consen 266 ERLKELLKEVES---------GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-GG-LWCIGATTLETYRKCIEK 334 (898)
T ss_pred HHHHHHHHHHhc---------CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-CC-eEEEecccHHHHHHHHhh
Confidence 444444432111 12345999999998842 233444444443 22 666665531 1224
Q ss_pred chhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHH
Q 019145 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSS 244 (345)
Q Consensus 199 ~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~ 244 (345)
+|++.+|++.+.++-|+.++...++...... +|..++++++...+.
T Consensus 335 dPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~ 384 (898)
T KOG1051|consen 335 DPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQ 384 (898)
T ss_pred CcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccc
Confidence 7889999998888889888877777665544 455565555444443
|
|
| >KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=73.23 Aligned_cols=147 Identities=22% Similarity=0.334 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 71 ~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
..+..+...+. -.++|-||.|+|||.+++.++++. +.++++++...... +++.+..+.....+.-.-+.+
T Consensus 430 a~~~~a~~~~~-~pillqG~tssGKtsii~~la~~~------g~~~vrinnhehtd---~qeyig~y~~~~~g~l~freg 499 (1856)
T KOG1808|consen 430 ADLARAISSGK-FPILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHTD---LQEYIGTYVADDNGDLVFREG 499 (1856)
T ss_pred HHHHHHHhcCC-CCeEEecCcCcCchhHHHHHHHHh------ccCceehhccccch---HHHHHHhhhcCCCCCeeeehh
Confidence 34444444443 359999999999999999999998 67777776644322 233333222111110000000
Q ss_pred C---CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----CceEE---------EEecCcc------cccchhhhccce
Q 019145 151 Y---PCPPYKIIILDEADSMTEDAQNALRRTMETYS-----KVTRF---------FFICNYI------SRIIEPLASRCA 207 (345)
Q Consensus 151 ~---~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----~~~~i---------i~~~n~~------~~l~~~l~~r~~ 207 (345)
. ...+...+|+||++..+.+..+.|.+++++.. ...++ ..+-|.+ ..+..++.+|+.
T Consensus 500 ~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~ 579 (1856)
T KOG1808|consen 500 VLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFI 579 (1856)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccch
Confidence 0 01134599999999999999999999998722 12221 2222332 235677788888
Q ss_pred eEEecCCCHHHHHHHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~ 227 (345)
.++|.....+++..++..+|
T Consensus 580 e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcCchhhhhhhcccc
Confidence 88888888887777776544
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=58.25 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=25.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
+++|.|+||+|||++++.+++.+ +.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l------g~~~id~ 32 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL------SFGFIDT 32 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEC
Confidence 69999999999999999999998 5555543
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00014 Score=59.14 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999998
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.006 Score=47.56 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|+||+||||+++.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=57.22 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|.|||||||+++.+. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 66
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=70.41 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-CCCCCceeeeecCCccchHHHHH------HHHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRT------KIKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 138 (345)
.+.....+..++.... ..++|.|.+||||||+++.+...+..- ...+..++-+.+ .......+.+ .+..+.
T Consensus 969 t~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAP-TgrAAk~L~e~Gi~A~TI~s~L 1046 (1747)
T PRK13709 969 TSGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGP-THRAVGEMRSAGVDAQTLASFL 1046 (1747)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECC-cHHHHHHHHhcCcchhhHHHHh
Confidence 3445555555554432 357999999999999999998775210 111223333322 2111111111 111111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..... .............++||||+.+++......|++.+.. ...++|++++..
T Consensus 1047 ~~~~~-~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~~ 1100 (1747)
T PRK13709 1047 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDTD 1100 (1747)
T ss_pred ccccc-ccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecchH
Confidence 11000 0000111123457999999999999999999988864 346788998643
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00091 Score=61.56 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~ 109 (345)
...+|+++...+.....+..++...+ .-+|++||+|+||||+..++.+.++.+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 45566777667777788888887655 236999999999999999999998654
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=61.38 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+....++..++.... ..++.||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344455554444332 36999999999998888887776
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00011 Score=65.79 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~~ 109 (345)
+.....+|+||||+|||++++.+++.....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 344458999999999999999999987443
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=53.78 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++++||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 379999999999999999998874
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00069 Score=54.14 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCeEEEEEcCC-CCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEE
Q 019145 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210 (345)
Q Consensus 154 ~~~~iliiDE~-~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~ 210 (345)
.++.+++-||- .++.++....+++++++.......|+.++....+...+..|+-.++
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 35679999995 5788998889999998765433333333344455566666655443
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00033 Score=56.34 Aligned_cols=31 Identities=35% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 76 TLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 76 ~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+..+....+.+.|++|+||||+++.+++.+
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444447889999999999999999986
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0017 Score=55.44 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+....++|+||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34455899999999999999999998743
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0034 Score=51.61 Aligned_cols=24 Identities=46% Similarity=0.834 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++++||||+||||+++.+++.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999887
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0039 Score=53.91 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.+++++--.+.....|..++.... ..++|+||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3455666445667777777765443 3589999999999999999988873
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00062 Score=60.99 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||++..++..+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999876
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 47999999999999999999886
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00069 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++|.|+.|+||||+++.+++.+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999999843
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0051 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 36899999999999999999986
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0032 Score=57.73 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||++..++...
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998764
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=50.43 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=52.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
..+.|.||+|+||||+++.++....... .-+.++.... .+.... ..+.-.... ..+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~----G~i~~~~~~~i~~~~~lS~G~~-~rv~laral------------~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDE----GIVTWGSTVKIGYFEQLSGGEK-MRLALAKLL------------LENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCc----eEEEECCeEEEEEEccCCHHHH-HHHHHHHHH------------hcCC
Confidence 3479999999999999999987652111 1111111000 011111 111111111 1244
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 157 KIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 157 ~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.++++||.. .++......+.+++.+.. ..+++++...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~ 127 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDR 127 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCH
Confidence 699999964 678888888888887652 3456666543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0021 Score=51.38 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=53.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--h-HHHHHH-----------HHHHHHhhhcCCCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--I-NVVRTK-----------IKTFAAVAVGSGQRR 148 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-----------~~~~~~~~~~~~~~~ 148 (345)
..+.|.||.|+||||+++.++...... ..-+.++..+... . ...+.. ........
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lar------- 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIAR------- 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHH-------
Confidence 358999999999999999998765211 1112222211100 0 000000 00000000
Q ss_pred CCCCCCCeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcc
Q 019145 149 GGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~ 195 (345)
....+++++++||.. .++......+.+++.+.. ....+|+++...
T Consensus 96 --al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 96 --ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred --HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 011245799999965 577777777777776542 234456666443
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00024 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|+|+||+|||++++.++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=59.79 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCC--CCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 152 PCPPYKIIILDEADS--MTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 152 ~~~~~~iliiDE~~~--l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
...++.+|||||+|. +..+.+=.|++-+-......++|+.+
T Consensus 160 ~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 160 LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 456889999999996 44555545554444444556677665
|
|
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0047 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||++..|+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00086 Score=60.52 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+....++|+||+|+|||++++.+++.+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 34445899999999999999999998743
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0047 Score=54.44 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=35.2
Q ss_pred CCCCcccc--c--cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 57 PKQVKDVA--H--QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 57 p~~~~~~~--g--~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++++++ | .+.....|..++..+ .+++++||+|+||||+++++...+
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHh
Confidence 34555554 2 244556677777643 479999999999999999999887
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.005 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++++||+|+||||+++++...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998876
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0025 Score=51.96 Aligned_cols=23 Identities=48% Similarity=0.992 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||||+||||+++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0007 Score=55.74 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCCCH-H------HHHHHHHHHh-hcCCceEEEEecCcccccchhhhccce-eEEec
Q 019145 155 PYKIIILDEADSMTE-D------AQNALRRTME-TYSKVTRFFFICNYISRIIEPLASRCA-KFRFK 212 (345)
Q Consensus 155 ~~~iliiDE~~~l~~-~------~~~~l~~~le-~~~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~ 212 (345)
...++||||++.+.+ . ....+ +.+. .+....-++++|-.+..+++.++..++ .+++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 346999999997632 1 12333 5554 344567789999888999998887766 34443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00019 Score=54.62 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|+||+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
|
... |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.027 Score=52.13 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++|++|+||||++..+|..+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 69999999999999999998774
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0025 Score=53.21 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=30.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
+.++||||+|||+++..++...... +..++.++... .....+.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CCHHHHHH
Confidence 6999999999999999998876332 34566666653 33444433
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0036 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..++++||+|+||||+++++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999998873
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0022 Score=50.84 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=53.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--hHHH--------------HHHHHHHHHhhhcCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVV--------------RTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~ 146 (345)
..+.|.||+|+||||++++++..+.. ...-+.++...... .... ...+.- ...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~----~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l-~~~------ 94 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP----TSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVAL-ARA------ 94 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHH-HHH------
Confidence 34799999999999999999876521 11112232211000 0000 000000 000
Q ss_pred CCCCCCCCCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCccc
Q 019145 147 RRGGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~~ 196 (345)
...+..++++||.. .++......+.+.+.+... ...+++++....
T Consensus 95 -----l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 95 -----LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred -----HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 01234699999976 5777777777777765433 244566665433
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00028 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|+|+||+||||+++.+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999998
|
|
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00026 Score=56.05 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=27.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
.+++|.|++|+||||+.+.+|+.+ +.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L------~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL------NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc------CCCcccch
Confidence 469999999999999999999999 66666544
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00058 Score=59.74 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+||+|+||||++..++..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998873
|
|
| >KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=52.64 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=36.4
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~s~g~~r~~~ 254 (345)
+..++..+++.+|...++..+....-+. ..++....+.-.|+||++.+.
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~ 454 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLME 454 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHH
Confidence 3467888999999999998887653221 346778888888999995543
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=70.08 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH-------HH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK-------TF 137 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 137 (345)
........+..++... ....++.|++|||||++++.+...+... +..++-+.+ .......+.+... .+
T Consensus 430 Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~---G~~V~~lAP-TgrAA~~L~e~~g~~A~Ti~~~ 504 (1960)
T TIGR02760 430 LSPSNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQ---GYEIQIITA-GSLSAQELRQKIPRLASTFITW 504 (1960)
T ss_pred CCHHHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhc---CCeEEEEeC-CHHHHHHHHHHhcchhhhHHHH
Confidence 3455556666555543 2347999999999999999998876322 334444433 2222222222111 00
Q ss_pred HHhhhcCCC-------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 138 AAVAVGSGQ-------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 138 ~~~~~~~~~-------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
......... ........+.++|||||+.+++......|++.... .+..+|++++.
T Consensus 505 l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 505 VKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred HHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 000000000 00011224567999999999999988888887754 34678888753
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0065 Score=47.64 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=65.5
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC-CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCC
Q 019145 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166 (345)
Q Consensus 88 ~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~ 166 (345)
.+.+||||||++.+|.+-+.. +..+.=+.- .......+...+..+.. ....+||.|-=..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-----wgHvQnDnI~~k~~~~f~~~~l~~L~~--------------~~~~vViaDRNNh 65 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-----WGHVQNDNITGKRKPKFIKAVLELLAK--------------DTHPVVIADRNNH 65 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-----CCccccCCCCCCCHHHHHHHHHHHHhh--------------CCCCEEEEeCCCc
Confidence 578999999999999988720 222211111 11122222233333211 2346999997665
Q ss_pred CCHHHHHHHHHHHhhcCC-------ceEEEEec---Cc-ccc----cchhhhccce---eEEecCCCHHHHHHHHHHHHH
Q 019145 167 MTEDAQNALRRTMETYSK-------VTRFFFIC---NY-ISR----IIEPLASRCA---KFRFKPLSEEVMSSRVLHICN 228 (345)
Q Consensus 167 l~~~~~~~l~~~le~~~~-------~~~ii~~~---n~-~~~----l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~ 228 (345)
... ....|+..++.... ++++|... +. ... ..+.+..|++ .+.........+..++..+++
T Consensus 66 ~~r-eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~ 144 (168)
T PF08303_consen 66 QKR-ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIK 144 (168)
T ss_pred hHH-HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHH
Confidence 543 33445555554333 56666554 22 111 2345555664 566666666777777777665
Q ss_pred H
Q 019145 229 E 229 (345)
Q Consensus 229 ~ 229 (345)
.
T Consensus 145 r 145 (168)
T PF08303_consen 145 R 145 (168)
T ss_pred h
Confidence 4
|
Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00031 Score=47.16 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF13337 Lon_2: Putative ATP-dependent Lon protease | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0024 Score=58.31 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=56.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
-|++=.||.|||||++-+.+.. ..+-++++.. +. ..++-+......+ .-+.+++|++|
T Consensus 209 ~NliELgPrGTGKS~vy~eiSp----------~~~liSGG~~-T~---A~LFyn~~~~~~G--------lV~~~D~VafD 266 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYKEISP----------YGILISGGQV-TV---AKLFYNMSTGQIG--------LVGRWDVVAFD 266 (457)
T ss_pred cceEEEcCCCCCceeehhhcCc----------ccEEEECCCc-ch---HHheeeccCCcce--------eeeeccEEEEE
Confidence 3688899999999999776632 2333454432 11 1222211111111 11356799999
Q ss_pred CCCCCC---HHHHHHHHHHHhhcC---------CceEEEEecCccc
Q 019145 163 EADSMT---EDAQNALRRTMETYS---------KVTRFFFICNYIS 196 (345)
Q Consensus 163 E~~~l~---~~~~~~l~~~le~~~---------~~~~ii~~~n~~~ 196 (345)
|+..+. ++....|..+|++.. ....+++++|...
T Consensus 267 Ev~~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~ 312 (457)
T PF13337_consen 267 EVAGIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNINQ 312 (457)
T ss_pred eccCcccCChHHHHHHHHHHhccceeecccccccceeEEEEcCcCC
Confidence 999875 566677888887532 4577899887553
|
|
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0026 Score=55.09 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=46.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec-------C---CccchHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-------S---DDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (345)
-++|+|-||+|||++++.|...+... +..+..++. . +.......+..+.........
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~---~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls---------- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK---GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS---------- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT---T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc---CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc----------
Confidence 47999999999999999999987432 222322221 1 112233344444444333332
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEe
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~ 191 (345)
+..+||+|+..++ +...-.|+.+-........+|.+
T Consensus 70 -~~~iVI~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 70 -KDTIVILDDNNYI-KGMRYELYCLARAYGTTFCVIYC 105 (270)
T ss_dssp -T-SEEEE-S---S-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred -cCeEEEEeCCchH-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 2369999998765 34455566655554444334433
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=53.50 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++|+||+|||+++..++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998873
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00034 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00025 Score=59.43 Aligned_cols=20 Identities=55% Similarity=1.077 Sum_probs=18.1
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la 103 (345)
.++|||+||+|||+++..+-
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~ 24 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLP 24 (213)
T ss_pred EEEEECCCCCCHHHHHHhCC
Confidence 48999999999999998883
|
|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00033 Score=55.09 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999986
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=56.72 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|+||+|+||||++..+|..+.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68889999999999999998873
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0049 Score=49.64 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=30.2
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~ 197 (345)
+.+++++||.. .++......+.+++.+......+|+++.....
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 55799999954 67777778888887765444556677765443
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00042 Score=58.15 Aligned_cols=24 Identities=38% Similarity=0.800 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||||+||||+++.|++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
|
|
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0016 Score=57.34 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||+|+|||+++..+++.+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhC
Confidence 47999999999999999999987
|
|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=48.75 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=19.0
Q ss_pred EeCCCCCCHHHHHHHHHHHh
Q 019145 87 FYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 87 l~G~~G~GKT~la~~la~~l 106 (345)
+.||||+||||+++.+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999997
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0052 Score=51.53 Aligned_cols=22 Identities=45% Similarity=0.819 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.+++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0026 Score=59.32 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||++..|+..+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHH
Confidence 37999999999999999999876
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.038 Score=51.10 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=68.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCC---CCCC--------C
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSG---QRRG--------G 150 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~--------~ 150 (345)
++++|++|+||||++..+|..+.... +..+..+++...+.. ....+...... +.... ..+. .
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~--a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPA--AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchH--HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 69999999999999999998863222 234444444332221 11111111110 00000 0000 0
Q ss_pred CCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhc-CCceEEEEecCcccc---cchhhhccce--eEEecCCCHHHHHHH
Q 019145 151 YPCPPYKIIILDEADSMT--EDAQNALRRTMETY-SKVTRFFFICNYISR---IIEPLASRCA--KFRFKPLSEEVMSSR 222 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~-~~~~~ii~~~n~~~~---l~~~l~~r~~--~i~~~~~~~~~~~~~ 222 (345)
.....+++||||=...+. ......+..+.+.. +..+.+|+-+..... ....+..++. -+-+..++.+.....
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~ 257 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGA 257 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCcccccH
Confidence 012356799999988774 33444444443332 233334443322211 1223333322 344666665555555
Q ss_pred HHHHHHHhCCC
Q 019145 223 VLHICNEEGLN 233 (345)
Q Consensus 223 l~~~~~~~~~~ 233 (345)
+...+...+++
T Consensus 258 ~lsi~~~~~~P 268 (428)
T TIGR00959 258 ALSVRSVTGKP 268 (428)
T ss_pred HHHHHHHHCcC
Confidence 55555544443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0048 Score=49.86 Aligned_cols=25 Identities=44% Similarity=0.521 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...+.|.||.|+||||+++.++..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457999999999999999998765
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.022 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
...+++.|++|+|||++++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 356899999999999999999875
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0084 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++|.||||+||+|.++.+++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999999987
|
|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00039 Score=55.53 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00079 Score=56.82 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHc---CCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~---~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++++.|...+.. +....+.+.|++|+||||+|+.|+..+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566777777753 2223368999999999999999999984
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++|+||+|||+++..++...
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7999999999999999997764
|
|
| >TIGR00174 miaA tRNA isopentenyltransferase (miaA) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0053 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||+|+|||+++..+++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999999987
|
Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0064 Score=49.32 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcccc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~ 197 (345)
.+++++++||.. .++......+.+.+.+......+|+++.....
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 356799999964 67777777787777765444556666655443
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00047 Score=53.47 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|||||||||+++.++..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 5789999999999999999998
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0022 Score=60.91 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.+++++|+||+- .++++....+.+.+.+.-+.+.+|-++..
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 467899999985 57888999999999875455666766643
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00059 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.806 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||||+||||+++.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
|
|
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00073 Score=54.83 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
..+++|.|.+|+||||+++.+++.+ +..++..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l------g~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL------MLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc------CCCEEECC
Confidence 4568999999999999999999998 66666544
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.008 Score=51.94 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+.|+||+|+|||+++..++..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4589999999999999999998863
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0032 Score=55.95 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||++..++..+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999874
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0048 Score=50.15 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC--ceEEEEecCccc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~~ 196 (345)
.+++++++||.- .++......+.+.+.+... ...+|+++....
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 356799999965 6777777788777776433 345666665433
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0046 Score=56.11 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..|-+.+..+-.+. ++|+|+||+|||+++..++..+... +..++.++..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 34444454443332 6999999999999999998876322 2345555543
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00068 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+++.||||+||||+++.+++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999887
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=57.10 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=70.6
Q ss_pred ccccc-cHHHHHHHHHHHHc---C-CC-Cc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 61 KDVAH-QEEVVRVLTNTLET---A-NC-PH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 61 ~~~~g-~~~~~~~l~~~l~~---~-~~-~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.++.+ .++....+.+++.. + .. .. ++|+|+.|+|||++++.+..-+ +... .....+ .......+
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~-----~~~~~~--~~~~~~~~- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDYA-----TTAVAS--LKMNEFQE- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chhh-----ccCCcc--hhhhhccC-
Confidence 33443 44556666666532 1 11 12 6999999999999999886655 3211 000000 00000000
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh--------------cCCceEEEEecCccccc-
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET--------------YSKVTRFFFICNYISRI- 198 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~--------------~~~~~~ii~~~n~~~~l- 198 (345)
..+.. .......++++||++.-.....+.|..+... ......+|+++|....+
T Consensus 119 -~~f~~-----------a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 119 -HRFGL-----------ARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred -CCchh-----------hhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 00000 0112456999999875433233444444431 11356688889876654
Q ss_pred --chhhhccceeEEecC
Q 019145 199 --IEPLASRCAKFRFKP 213 (345)
Q Consensus 199 --~~~l~~r~~~i~~~~ 213 (345)
..++.+|..++.|..
T Consensus 187 ~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 187 GFDGGIKRRLRIIPFTK 203 (304)
T ss_pred CCChhheeeEEEEeccC
Confidence 467888998888854
|
This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. |
| >KOG2383 consensus Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0044 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..++|||..|||||++.-.+..++
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcC
Confidence 3459999999999999998887665
|
|
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00062 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47999999999999999999986
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0094 Score=50.05 Aligned_cols=35 Identities=37% Similarity=0.653 Sum_probs=26.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++++|+||+|||+++..++...... +..++.++..
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e 56 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTE 56 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 6999999999999999999887332 3455556554
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0084 Score=48.38 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~~ 196 (345)
+.+++++||.- .++......+.+++.+... ...+|+++....
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 55799999965 6777777777777765432 345666665543
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0036 Score=50.58 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=27.3
Q ss_pred eEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCccc
Q 019145 156 YKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (345)
Q Consensus 156 ~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~ 196 (345)
.+++++||.- .++......+.+.+.+.. ....+|+++....
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999964 577777777777776542 2345666665543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00099 Score=59.68 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+.....+|+||+|||||++++.+++.+..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45556999999999999999999998743
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.++...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998865
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0058 Score=57.11 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++....++..|..... ....++.-|+|+|||.++..++..+.
T Consensus 38 r~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~ 80 (442)
T COG1061 38 RPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK 80 (442)
T ss_pred cHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc
Confidence 4444455555554322 34589999999999999999999883
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0069 Score=62.84 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
......|...+..+. .++++|++|+||||.+=.+..+.
T Consensus 69 ~~~~~~Il~~l~~~~--vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 69 SAKREDIAEAIAENQ--VVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred HHHHHHHHHHHHhCc--eEEEeCCCCCCcHHHHHHHHHHc
Confidence 334466666776544 58999999999999886666554
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00082 Score=54.19 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++|.|++|+||||+++.+++.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999987
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.049 Score=47.06 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=27.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
-+|++||+|+||||+..++...++... ...++.+..+
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~--~~HIlTIEDP 163 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK--AKHILTIEDP 163 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC--CcceEEecCc
Confidence 379999999999999999999985432 3445555443
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|+||+|||+++..++...
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999988766
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00075 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||||+++.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00076 Score=54.52 Aligned_cols=23 Identities=48% Similarity=0.881 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999996
|
|
| >PRK03731 aroL shikimate kinase II; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0009 Score=53.91 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=25.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.+++|+|++|+|||++++.+++.+ +..++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l------g~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL------GYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------CCCEEEc
Confidence 358999999999999999999998 5555543
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0049 Score=60.33 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~ 100 (345)
.|.+++..+...+....+-+.++.||+|+|||.++-
T Consensus 239 ~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 239 AQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred HHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHH
Confidence 466677777666655555578999999999998764
|
|
| >PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.059 Score=49.37 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=58.6
Q ss_pred EEEEEcCCCCCC--------HHHHHHHHHHHhhcC----CceEEEEecCccc--------ccchhhhccc----------
Q 019145 157 KIIILDEADSMT--------EDAQNALRRTMETYS----KVTRFFFICNYIS--------RIIEPLASRC---------- 206 (345)
Q Consensus 157 ~iliiDE~~~l~--------~~~~~~l~~~le~~~----~~~~ii~~~n~~~--------~l~~~l~~r~---------- 206 (345)
-+|++||++.+- .+..+.|++++++.. ++.-+++++++.. .-.++|.+|.
T Consensus 241 LlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~ 320 (416)
T PF10923_consen 241 LLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGF 320 (416)
T ss_pred eEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccccc
Confidence 489999998762 234678888887633 4566666653221 1134444432
Q ss_pred -----eeEEecCCCHHHHHHHHHHHHHH------hCCCCCHHHHHHHHHhc
Q 019145 207 -----AKFRFKPLSEEVMSSRVLHICNE------EGLNLDAEALSTLSSIS 246 (345)
Q Consensus 207 -----~~i~~~~~~~~~~~~~l~~~~~~------~~~~i~~~~~~~l~~~s 246 (345)
.++.+.|++.+++..++.+...- ....++++.+..+++.+
T Consensus 321 ~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 321 DNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred cCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 37889999999999888876542 12357888888887655
|
Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins. |
| >PRK13946 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00088 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++|+|++|+|||++++.+++.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999998
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0065 Score=57.44 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCCCCeEEEEEcCCCC--CCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 151 YPCPPYKIIILDEADS--MTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~--l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
+..+++.|++|||+|. ++.+.+=.|.+-+....+...+++.+
T Consensus 374 pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsS 417 (902)
T KOG0923|consen 374 PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISS 417 (902)
T ss_pred ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeec
Confidence 3457899999999985 44555555555555555666666654
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0078 Score=59.80 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
......|...+.... .++|.||+|+||||-+-.+.-+.
T Consensus 52 ~~~~~~i~~ai~~~~--vvii~getGsGKTTqlP~~lle~ 89 (845)
T COG1643 52 TAVRDEILKAIEQNQ--VVIIVGETGSGKTTQLPQFLLEE 89 (845)
T ss_pred HHHHHHHHHHHHhCC--EEEEeCCCCCChHHHHHHHHHhh
Confidence 444566666666554 48999999999999887766554
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0063 Score=56.82 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..|-+.+..|-.+. ++|+|+||+|||+++..++...... +..++.++..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E 117 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE 117 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc
Confidence 34444454443322 6999999999999999999876321 3355555543
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0058 Score=57.59 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=37.6
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.+++++--.++....+...+.... ..++++||+|+||||+++++.+.+.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4456666546777778877775443 3479999999999999999888874
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0047 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
.++++.||+|+|||..+...+-
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHH
Confidence 4699999999999998875443
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0066 Score=56.64 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=36.6
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+++++--.+.....+.+.+.... ..++++||+|+||||++.++.+.+..
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~~-GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQPQ-GLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhcC-CeEEEECCCCCChHHHHHHHHHhhCC
Confidence 355565445666777777765443 35899999999999999998888743
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0087 Score=47.97 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++++|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999876
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0016 Score=57.68 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....|..++..+ .+++++|++|+||||+++++...+
T Consensus 131 ~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 131 EAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456667777654 379999999999999999999886
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.014 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..++++||+|+||||+++++...+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998874
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=52.09 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.++-+.+..+-.+. +|+-|.||.||||+.-.++..+... ..++++++..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEE 130 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEE 130 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCc
Confidence 45555565554443 6899999999999999998887432 2566666544
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0098 Score=49.86 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=56.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---c-----------eeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKS---R-----------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
.++++|++|+|||+++..+.+.......... . .+.+..-|..+...++.....+...
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~--------- 77 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG--------- 77 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC---------
Confidence 3899999999999999999987754221110 0 1112222444445554444333211
Q ss_pred CCCCCCeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcccccc
Q 019145 150 GYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISRII 199 (345)
Q Consensus 150 ~~~~~~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~~l~ 199 (345)
+..-+++.|... .-..+....+...+.+.. ....++++.|..+...
T Consensus 78 ----~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 78 ----ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred ----CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 233456666554 233344444554444433 3577888888766543
|
|
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0021 Score=56.91 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=38.2
Q ss_pred CCc-cccccHHHHHHHHHHHHcC------CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 59 QVK-DVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 59 ~~~-~~~g~~~~~~~l~~~l~~~------~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.|+ ++.|-++.+..|.+.++.. ....++|.||+|+|||++++.+.+-+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 8899988888887776542 22337999999999999999999887
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.01 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||.|+||||+++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 347999999999999999998644
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0055 Score=57.94 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++|+||+||||+++.++...
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999875
|
Note that the EC number for the kinase function is: 2.7.1.78 |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0069 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+...-
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0017 Score=53.07 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....|...++.+. +++|.||+|+||||+++++...+
T Consensus 12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 455566666666544 69999999999999999999876
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.02 Score=53.84 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCC--CHHHHHHHHHHHhhcC-CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCC
Q 019145 156 YKIIILDEADSM--TEDAQNALRRTMETYS-KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 156 ~~iliiDE~~~l--~~~~~~~l~~~le~~~-~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (345)
..++++.|+|.+ .+.....|.++..... ....+|+++ +...++..|.+-+.++.|+.|+.+|+..++...+...+.
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~ 160 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLNI 160 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcCC
Confidence 359999999988 3333334444333221 122344444 345688889888889999999999999999998887788
Q ss_pred CCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 233 NLDAEALSTLSSISQGD-LRRAITYLQGAARLFGSSITSKDLIS 275 (345)
Q Consensus 233 ~i~~~~~~~l~~~s~g~-~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (345)
.++++.++.+++.+.|- ...+.+.+.++. ...+.++.+++..
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~-~~~~~~~~~~~~~ 203 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKII-ATYKTIDENSIPL 203 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCCChhhHHH
Confidence 99999999999998764 444555555433 2344577765543
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0052 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+|||+++..++...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6999999999999999987764
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0032 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=19.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.++|.||+|+|||++...+.+.-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~ 27 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGK 27 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0012 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=22.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||+++.+++.+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999983
|
|
| >KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+||||+++++.+++
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHh
Confidence 37999999999999999999999
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0038 Score=60.87 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.....++..++... +.++++||||||||+++..++.++.
T Consensus 159 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~ 198 (637)
T TIGR00376 159 NESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLV 198 (637)
T ss_pred CHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 566666776665432 3589999999999999988887763
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.006 Score=56.06 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+|++|+||||++..+|..+.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998874
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0085 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3489999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00093 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.+.|+||+||||+++.++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 36889999999999999999987
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0076 Score=58.06 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++++--.+.....+.+.+.... ..++++||+|+||||+..++.+.+.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~-Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQ-GMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHhhC
Confidence 345555446666777777665433 4579999999999999999988874
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.018 Score=46.03 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=54.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCC----C-CceeeeecCCccchHHHHHHHHHHHHhhhcCCCC----CCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELY----K-SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCP 154 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 154 (345)
.+.|.||.|+||||+++.++..+....+. . ..+..+..........+.+.+..........++. .......
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999998875211110 0 0011111100000011111111000000000000 0000123
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
+++++++||.. .++......+.+.+.+. . ..+|+++...
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~-~tiiivsh~~ 148 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL-G-ITVISVGHRP 148 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh-C-CEEEEEeCCh
Confidence 56799999965 57788888888888775 2 4456666554
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0091 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.++|+||.|+||||+.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999984
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.001 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.++..+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0015 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.+++.+
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.021 Score=45.50 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||+++..+...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=54.87 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999887
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0008 Score=53.77 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+.|+|++||||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=46.91 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=27.6
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
+.+++++||.. .++......+.+++.+... ...+|+++...
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 55799999965 5677777778777776532 24456666543
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0073 Score=50.01 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la 103 (345)
.++|+||.|+||||+.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0012 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999886
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.018 Score=48.26 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=33.4
Q ss_pred CeEEEEEcC-CCCCCHHHHHHHHHHHhhc---CCceEEEEecCcccccchhhhccc
Q 019145 155 PYKIIILDE-ADSMTEDAQNALRRTMETY---SKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 155 ~~~iliiDE-~~~l~~~~~~~l~~~le~~---~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
.+.++|+|| +..+.....+.|++.+++. +....++++|-....+++-+..+.
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 567999999 4556666666666666543 234557777777666666555443
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.018 Score=56.43 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++...+.+..|...+...+-+++-|+|+|||.++-.++..+
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l 297 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV 297 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh
Confidence 467777888888876655567888999999999998887765
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.017 Score=55.85 Aligned_cols=227 Identities=16% Similarity=0.125 Sum_probs=120.7
Q ss_pred hhhCCCCCccccccHHHHHHHHHH------HHcCCCCcEEEeC----CCCCCHHHHHHHHHHHhcC----CCCCCCceee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNT------LETANCPHMLFYG----PPGTGKTTTALAIAHQLFG----PELYKSRVLE 118 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~------l~~~~~~~lll~G----~~G~GKT~la~~la~~l~~----~~~~~~~~~~ 118 (345)
+.-+|..+.++.+++......... .......+...+| ++|++++.....+...... .......+.+
T Consensus 96 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 175 (647)
T COG1067 96 PAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVE 175 (647)
T ss_pred cccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhh
Confidence 345666777777765544332222 1112223467777 9999999998766555310 0001111222
Q ss_pred eecCCcc-----chHHHHHHHHHHHHhhhcC--------CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---
Q 019145 119 LNASDDR-----GINVVRTKIKTFAAVAVGS--------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--- 182 (345)
Q Consensus 119 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~--- 182 (345)
....+.. .......++.........+ ...++....+..+||||||+..|....+..+++.+.+.
T Consensus 176 ~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~ 255 (647)
T COG1067 176 LSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQP 255 (647)
T ss_pred hccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhcccc
Confidence 2100000 0001112222211111111 11334445678899999999999977777766666532
Q ss_pred ------------------CCceEEEEecCcc--cccchhhhcc---cee-EEecCC---CHHHHHHHHHHHHH---Hh-C
Q 019145 183 ------------------SKVTRFFFICNYI--SRIIEPLASR---CAK-FRFKPL---SEEVMSSRVLHICN---EE-G 231 (345)
Q Consensus 183 ------------------~~~~~ii~~~n~~--~~l~~~l~~r---~~~-i~~~~~---~~~~~~~~l~~~~~---~~-~ 231 (345)
|....+|+++|.. ..+.+...+| +.. ..|..+ +++...+.++.++. +. +
T Consensus 256 ~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ 335 (647)
T COG1067 256 IWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGN 335 (647)
T ss_pred ccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 2345677777643 2233333333 222 455432 44444444444332 33 3
Q ss_pred -CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhCC
Q 019145 232 -LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLFG----SSITSKDLISVSGV 279 (345)
Q Consensus 232 -~~i~~~~~~~l~~~s----------~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~~ 279 (345)
..++.+++..|++.. .-.+|.+.+.++.+...+. +-|+.+||.++...
T Consensus 336 ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 336 IPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 458999998887553 2368888888886665552 23999999988766
|
|
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0026 Score=56.50 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.+++|+|++|+|||++++.++..+ +.+++.+
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L------g~~~id~ 164 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL------GVPFVEL 164 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc------CCCEEeH
Confidence 348999999999999999999998 6666643
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.01 Score=64.93 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHH----HHHHhcCCCCCCCceeeeecCCccchHHHH------HHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA----IAHQLFGPELYKSRVLELNASDDRGINVVR------TKIK 135 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~----la~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 135 (345)
.+.....+...+.... ..+++.|++||||||+++. +...+.. .+..++.+.+.. .....+. ..+.
T Consensus 1021 t~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~-~Aa~~L~~~g~~a~Ti~ 1095 (1960)
T TIGR02760 1021 THGQKQAIHLIISTKD-RFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTH-EAVGELKSAGVQAQTLD 1095 (1960)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChH-HHHHHHHhcCCchHhHH
Confidence 3444445555554432 3479999999999999954 4333211 133444443221 1111111 1111
Q ss_pred HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.+... ...........+..++||||+.+++......|++..+. ...++|++++...
T Consensus 1096 s~l~~---~~~~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~~~--~~ak~vlvGD~~Q 1151 (1960)
T TIGR02760 1096 SFLTD---ISLYRNSGGDFRNTLFILDESSMVSNFQLTHATELVQK--SGSRAVSLGDIAQ 1151 (1960)
T ss_pred HHhcC---cccccccCCCCcccEEEEEccccccHHHHHHHHHhccC--CCCEEEEeCChhh
Confidence 11110 00000001133567999999999999999999888765 3467889886543
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0062 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+-+.|++|+||||+++.+...+.+
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999999999853
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.029 Score=44.38 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0061 Score=55.48 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHhh-----cCCceEEEEecCcccccchhhhccce
Q 019145 153 CPPYKIIILDEADSMTEDAQNALRRTMET-----YSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~~~~~l~~~le~-----~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..+.-|+|+||+|.+..+.-..|+.-++. ++..+-+.++|..+..+++.+.+.+.
T Consensus 253 dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~QLG 312 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVLGQLG 312 (502)
T ss_pred CCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHHHhhh
Confidence 33455788999999865443444433332 24567788888888888887776543
|
This family is restricted to bacterial proteins, none of which have currently been characterised. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 345 | ||||
| 1sxj_D | 353 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 5e-82 | ||
| 2chq_A | 319 | Replication Factor C Adpnp Complex Length = 319 | 7e-66 | ||
| 1iqp_A | 327 | Crystal Structure Of The Clamp Loader Small Subunit | 4e-64 | ||
| 2chg_A | 226 | Replication Factor C Domains 1 And 2 Length = 226 | 3e-63 | ||
| 1sxj_B | 323 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 9e-51 | ||
| 1sxj_C | 340 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 4e-50 | ||
| 1sxj_E | 354 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 1e-29 | ||
| 3u5z_B | 324 | Structure Of T4 Bacteriophage Clamp Loader Bound To | 2e-16 | ||
| 1njg_A | 250 | Nucleotide-Free Form Of An Isolated E. Coli Clamp L | 7e-13 | ||
| 3glf_B | 395 | Crystal Structure Of The Ecoli Clamp Loader Bound T | 8e-13 | ||
| 3glh_B | 376 | Crystal Structure Of The E. Coli Clamp Loader Bound | 9e-13 | ||
| 1xxi_B | 368 | Adp Bound E. Coli Clamp Loader Complex Length = 368 | 1e-12 | ||
| 1jr3_A | 373 | Crystal Structure Of The Processivity Clamp Loader | 1e-12 | ||
| 3glg_B | 395 | Crystal Structure Of A Mutant (Gammat157a) E. Coli | 1e-12 | ||
| 1sxj_A | 516 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 2e-11 | ||
| 1ixr_C | 312 | Ruva-Ruvb Complex Length = 312 | 7e-05 | ||
| 1ixs_B | 318 | Structure Of Ruvb Complexed With Ruva Domain Iii Le | 8e-05 | ||
| 1hqc_A | 324 | Structure Of Ruvb From Thermus Thermophilus Hb8 Len | 9e-05 | ||
| 3pvs_A | 447 | Structure And Biochemical Activities Of Escherichia | 1e-04 | ||
| 1j7k_A | 334 | Thermotoga Maritima Ruvb P216g Mutant Length = 334 | 2e-04 | ||
| 1in8_A | 334 | Thermotoga Maritima Ruvb T158v Length = 334 | 2e-04 | ||
| 1in5_A | 334 | Thermogota Maritima Ruvb A156s Mutant Length = 334 | 2e-04 | ||
| 1in7_A | 334 | Thermotoga Maritima Ruvb R170a Length = 334 | 2e-04 | ||
| 1in4_A | 334 | Thermotoga Maritima Ruvb Holliday Junction Branch M | 2e-04 | ||
| 1in6_A | 334 | Thermotoga Maritima Ruvb K64r Mutant Length = 334 | 5e-04 |
| >pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 | Back alignment and structure |
|
| >pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319 | Back alignment and structure |
|
| >pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 | Back alignment and structure |
|
| >pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226 | Back alignment and structure |
|
| >pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 | Back alignment and structure |
|
| >pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 | Back alignment and structure |
|
| >pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354 | Back alignment and structure |
|
| >pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324 | Back alignment and structure |
|
| >pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 | Back alignment and structure |
|
| >pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395 | Back alignment and structure |
|
| >pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 | Back alignment and structure |
|
| >pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368 | Back alignment and structure |
|
| >pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373 | Back alignment and structure |
|
| >pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 516 | Back alignment and structure |
|
| >pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 | Back alignment and structure |
|
| >pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 | Back alignment and structure |
|
| >pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 | Back alignment and structure |
|
| >pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447 | Back alignment and structure |
|
| >pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v Length = 334 | Back alignment and structure |
|
| >pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a Length = 334 | Back alignment and structure |
|
| >pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration Motor Length = 334 | Back alignment and structure |
|
| >pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 397 bits (1023), Expect = e-139
Identities = 126/297 (42%), Positives = 181/297 (60%), Gaps = 11/297 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG ++ +E+NASD+RGI+VVR KIK FA R P+KII LDEA
Sbjct: 61 DLFGEN-WRDNFIEMNASDERGIDVVRHKIKEFA--------RTAPIGGAPFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +EG+ + + L L IS GD R+AI LQGAA + + + + ++ PE
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE-VVDADTIYQITATARPEE 230
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQVTLLLFVLMVQHSRQCLYII 340
+ L G+F A + ++ ++ E G +++Q+ + + ++ S + I
Sbjct: 231 MTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLID 287
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-138
Identities = 124/288 (43%), Positives = 179/288 (62%), Gaps = 11/288 (3%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
++ V +PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT A
Sbjct: 4 EIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAA 63
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA+A +LFG ++ LELNASD+RGINV+R K+K FA R +KII
Sbjct: 64 LALARELFGEN-WRHNFLELNASDERGINVIREKVKEFA--------RTKPIGGASFKII 114
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E +
Sbjct: 115 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 174
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
+ R+ +I EGL L E L + I++GD+RRAI LQ AA L IT +++ V+
Sbjct: 175 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK-KITDENVFMVASR 233
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEV-NNIIAEGYPASLLLSQVTLLLF 326
PE + + + G+F A +++ ++ +G +L Q+ +F
Sbjct: 234 ARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVF 281
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 | Back alignment and structure |
|---|
Score = 393 bits (1010), Expect = e-137
Identities = 149/311 (47%), Positives = 202/311 (64%), Gaps = 10/311 (3%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F + ++ ++ + + + QPWVEKYRPK + +V Q+ V VL TL++AN
Sbjct: 2 FEGFGPNKKRKISKLAAEQS---LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANL 58
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+ +L+GP+L KSR+LELNASD+RGI++VR K+K FA + V
Sbjct: 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTV 118
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
S YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
PLAS+C+KFRFK L R+ I +E + D L + IS GDLRR IT LQ A
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 261 ARLFG-----SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
++ +ITS + ++GV+P +++ + +SGDFD K VN + G+ A+
Sbjct: 239 SKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAA 298
Query: 316 LLLSQVTLLLF 326
+++Q+
Sbjct: 299 SVVNQLHEYYI 309
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-133
Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 14/303 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +
Sbjct: 10 KENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G Y + VLELNASDDRGI+VVR +IK FA+ +K+IILDEAD
Sbjct: 70 IYGKN-YSNMVLELNASDDRGIDVVRNQIKDFASTRQ--------IFSKGFKLIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K TRF + NY ++ L S+C +FRF+PL +E + R+ +
Sbjct: 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIAN 180
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIP 281
+ E L L A L +S GD+RR + LQ + I+ + G
Sbjct: 181 VLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPR 240
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQVTLLLFVLMVQHSRQCLYII 340
P ++ + D+ A+ +N + A+G L+ + +L +Q+ ++++
Sbjct: 241 PSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLL 300
Query: 341 YSL 343
L
Sbjct: 301 TKL 303
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Score = 378 bits (972), Expect = e-132
Identities = 111/303 (36%), Positives = 160/303 (52%), Gaps = 11/303 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S+CA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+L I E + + L + ++GD+R+AI LQ G + + ++ +
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-LVNADNVFKIVDSP 231
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQHSRQCLYII 340
P +V+ + D ++ +GY + +++ + L L +I
Sbjct: 232 HPLIVKKMLLASNL--EDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMI 289
Query: 341 YSL 343
+
Sbjct: 290 KEI 292
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 368 bits (948), Expect = e-129
Identities = 116/235 (49%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA R P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFA--------RTAPIGGAPFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
IC +EG+ + + L L IS GD R+AI LQGAA + + + + ++
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE-VVDADTIYQITAT 225
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-113
Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 29/307 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTN-TLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
WV+KYRPK + ++H EE+ L + + + + PH+L YGP GTGK T +A+ +F
Sbjct: 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Query: 108 GPELYKSRV-----------------------LELNASDDRGIN--VVRTKIKTFAAVAV 142
GP +Y+ ++ LE+ SD + V++ +K A +
Sbjct: 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
Q YK +I++EA+S+T+DAQ ALRRTME YSK R +C+ +S II P+
Sbjct: 122 VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPI 181
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAA 261
S+C R S+ +S+ + + E + L+ + L ++ S G+LR ++ L+ A
Sbjct: 182 KSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241
Query: 262 RLFGSSITSKDLI--SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
++ S I ++ ++ + + +++A PA+++L
Sbjct: 242 LNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILK 301
Query: 320 QVTLLLF 326
++T L
Sbjct: 302 ELTFSLL 308
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324 | Back alignment and structure |
|---|
Score = 321 bits (826), Expect = e-110
Identities = 71/312 (22%), Positives = 122/312 (39%), Gaps = 34/312 (10%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP-PGTGKTTT 98
M V + +KYRP + + + PH++ + P PGTGKTT
Sbjct: 5 SMITVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTV 64
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
A A+ H + ++ +N SD + I+ VR + FA+ A K+
Sbjct: 65 AKALCHDVNAD------MMFVNGSDCK-IDFVRGPLTNFASAAS---------FDGRQKV 108
Query: 159 IILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
I++DE D S ++Q LR ME YS N I II+PL SRC F ++E
Sbjct: 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDE 168
Query: 218 -------VMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
M R+ IC EG+ + D + ++ L + D R+ I L + +
Sbjct: 169 DKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSS--KGVLD 226
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329
+ L V+ ++ + ++ D A+ S + ++ ++ +
Sbjct: 227 AGILSLVTN--DRGAIDDVLESLKNKDVKQLRALAPKYAAD---YSWFVGKLAEEIYSRV 281
Query: 330 VQHSR-QCLYII 340
S + I+
Sbjct: 282 TPQSIIRMYEIV 293
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 319 bits (819), Expect = e-106
Identities = 66/319 (20%), Positives = 113/319 (35%), Gaps = 37/319 (11%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE----- 78
++ S P + S + W KY P ++ V + V L N L
Sbjct: 2 GSSHHHHHHSSGLEVLFQGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENS 61
Query: 79 ------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126
+ + YGPPG GKTT A +A +L +LE NASD R
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL------GYDILEQNASDVRS 115
Query: 127 INVVRTKIKTFA----AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182
++ +K V + +II+DE D M+ + + + +
Sbjct: 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC 175
Query: 183 SKVTRFF-FICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS 240
K + ICN + + P C +F+ + SR++ I E LD +
Sbjct: 176 RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVID 235
Query: 241 TLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRS------ 294
L ++GD+R+ I L + +I +++ +S + F +
Sbjct: 236 RLIQTTRGDIRQVINLLSTISTTTK-TINHENINEISKAWEKNIALKPFDIAHKMLDGQI 294
Query: 295 -GDFDLANKEVNNIIAEGY 312
D N +N+ IA +
Sbjct: 295 YSDIGSRNFTLNDKIALYF 313
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 73/315 (23%), Positives = 125/315 (39%), Gaps = 64/315 (20%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
K+RP+ DV QE V+ L N L H LF G G GKT+ A +A L G
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKT--FAAVAVGSGQRRGGYP 152
E+ + R ++E++A+ + R + +A
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------- 118
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTME---TYSKVTRFFFICNYISRIIEPLA------ 203
+K+ ++DE ++ + NAL +T+E + K F+ LA
Sbjct: 119 --RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK-----FL----------LATTDPQK 161
Query: 204 ------SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
SRC +F K L E + ++ HI NEE + + AL L+ ++G LR A++
Sbjct: 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221
Query: 258 QGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLL 317
A ++++ + ++ G + + L + + +N A G L
Sbjct: 222 DQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281
Query: 318 LSQVTLLL-FVLMVQ 331
L ++ LL + MVQ
Sbjct: 282 LVEMLGLLHRIAMVQ 296
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 58/312 (18%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLF-----GPE--------- 110
L + + H +L PG G A++ L G +
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 111 LYKSR----VLELNASDDR---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
L ++ L + G++ VR + A G K++ + +
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGG----------AKVVWVTD 116
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
A +T+ A NAL +T+E T FF R++ L SRC P E+ + +
Sbjct: 117 AALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA--------RLFGSSITSKDLIS 275
+ + +AL +S G A+ QG + S+ S D S
Sbjct: 177 -----SREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYS 231
Query: 276 VSGVI----PPEVVEGLFAVCR------SGDFDLANKEVNNIIAEGYPASLLLSQVTLLL 325
+ + P + L + G + N +V ++AE + LS L
Sbjct: 232 LLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE---LANHLSPSRLQA 288
Query: 326 FVLMVQHSRQCL 337
+ V H R+ L
Sbjct: 289 ILGDVCHIREQL 300
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-26
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
K+RP+ DV QE V+ L N L H LF G G GKT+ A +A L G
Sbjct: 16 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKT--FAAVAVGSGQRRGGYP 152
E+ + R ++E++A+ + R + +A
Sbjct: 76 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------- 125
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
+K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K
Sbjct: 126 --RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 183
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L E + ++ HI NEE + + AL L+ ++G LR A++ A ++++
Sbjct: 184 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 243
Query: 273 LISVSG 278
+ ++ G
Sbjct: 244 VSAMLG 249
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 7e-14
Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 75/304 (24%)
Query: 53 EKYRPKQV-KDVAHQEEVVRVLTN----TLETANCPH-MLFYGPPGTGKTTTALAIA--- 103
+ P+Q + + Q R E +L G PGTGKT A+ +A
Sbjct: 35 DALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94
Query: 104 -----------HQLFGPELYKSR-----------------------VLELNASDDRGINV 129
++F E+ K+ + E++ + R
Sbjct: 95 GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGF 154
Query: 130 ----------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
++++++ V + G P ++ +DE + ++ + L R +
Sbjct: 155 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP-GVLFIDEVHMLDIESFSFLNRAL 213
Query: 180 E-TYSKVTRFFFICNYISRIIEP------------LASRCAKFRFKPLSEEVMSSRVLHI 226
E + V N I L R P SE+ +
Sbjct: 214 ESDMAPV--LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271
Query: 227 CNEEGLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
C EE + + +A + L+ I + LR AI + A+ + + V + + V
Sbjct: 272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLV--CRKRKGTEVQVDDI---KRV 326
Query: 286 EGLF 289
LF
Sbjct: 327 YSLF 330
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 3e-13
Identities = 62/411 (15%), Positives = 112/411 (27%), Gaps = 115/411 (27%)
Query: 5 FGKIHKSGKNK---------SPNF---TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWV 52
F + + N+ T Q P + + +Q
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-- 125
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH--MLFYGPPGTGKTTTALAIA-----HQ 105
+ V + + L L P +L G G+GKT AL +
Sbjct: 126 --FAKYNVS----RLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEA 164
++ LN + V ++ + R + +I
Sbjct: 179 KMD-----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI------ 227
Query: 165 DSMTEDAQNALRRTM--ETYSK---VTRFFFICNYISRIIEPLASRCAKF----RFKPLS 215
Q LRR + + Y V + N ++ C K RFK ++
Sbjct: 228 ----HSIQAELRRLLKSKPYENCLLVLL--NVQN--AKAWNAFNLSC-KILLTTRFKQVT 278
Query: 216 EEVMSSRVLHICNEE---GLNLDAEALSTLSS---ISQGDLRRAITYLQG---AARLFGS 266
+ + ++ HI + L D E S L DL R + L +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAE 335
Query: 267 SITS----------------KDLISVS-GVIPPEVVEGLFAVCRSGDFDLA--NKEVNNI 307
SI +I S V+ P +F L+ +I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSA-HI 387
Query: 308 IAEGYPASLL------LSQVTLLLFV-------LMVQHSRQCLYIIYSLLI 345
P LL + + +++ V L+ + ++ I S+ +
Sbjct: 388 -----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 3e-13
Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126
+ + ++ LF G GTGKT + I +++ + ++ +
Sbjct: 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89
Query: 127 INVVRTKIKTFAAVA---------------VGSGQRRGGYPCPPYKIIILDEADSMTE-- 169
V T +++A + II LDE D++ +
Sbjct: 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR 149
Query: 170 DAQNALRRTMETYSKVTRFFFICN---YISRIIEPLASRCAKFRFKPL-----SEEVMSS 221
L + + + + ++ I N + + S + ++S
Sbjct: 150 GGDIVLYQLLRSDANIS-VIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSK 208
Query: 222 RVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
+ + + + ++ +S+ GD R+A+ L AA+L
Sbjct: 209 YAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 4e-13
Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 49/261 (18%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKT 96
++ + Y PK++ H+E+ ++ L L + P G PGTGKT
Sbjct: 2 AIVVDDSVFSPSYVPKRLP---HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKT 58
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--- 153
T + + +R + +N R + +I ++ R G
Sbjct: 59 VTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEIAR----SLNIPFPRRGLSRDEF 112
Query: 154 -----------PPYKIIILDEADSMTEDAQNALRRTMETYSKVTR----FFFICN---YI 195
Y ++LD+A ++ D + R + K+ + + +
Sbjct: 113 LALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172
Query: 196 SRIIEPLASRCA--KFRFKPLSE----EVMSSRVLH-----ICNEEGLNLDAE--ALSTL 242
+ + RF P ++ +++ R +E+ L + A+ T
Sbjct: 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232
Query: 243 SSISQGDLRRAITYLQGAARL 263
++GD R AI L +A
Sbjct: 233 LDTNRGDARLAIDILYRSAYA 253
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
+ QP + RP+ + Q+ ++ + L +E + M+ +GPPGTGKTT A I
Sbjct: 11 NTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
A + V ++A G+ +R I+ A +G+R
Sbjct: 71 ARYA------NADVERISAVTS-GVKEIREAIER-ARQNRNAGRR 107
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 9e-06
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 198 IIEPLASRCAKFRFKPLSEEVMSS---RVLHICN----EEGLNLDAEALSTLSSISQGDL 250
+ L SR + K LS E + + + + + L E ++ + GD
Sbjct: 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA 208
Query: 251 RRAITYLQGAARLFGSSITSKDLISVSGV 279
RRA+ L+ A + + K ++ +
Sbjct: 209 RRALNTLEMMADMAEVDDSGKRVLKPELL 237
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Length = 305 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-10
Identities = 42/269 (15%), Positives = 93/269 (34%), Gaps = 47/269 (17%)
Query: 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR---VLELN- 120
++ + L +E + L G + +L + + E + + VLE++
Sbjct: 2 AKDQLETLKRIIEKSEGISI-LINGEDLSYPREVSLELPEYV---EKFPPKASDVLEIDP 57
Query: 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
++ GI+ +RT IK F + K +I+ + + MT+ A NA + +E
Sbjct: 58 EGENIGIDDIRT-IKDFLNYSPELYT---------RKYVIVHDCERMTQQAANAFLKALE 107
Query: 181 ---TYSKVTRFFFICN--YISRIIEPLASRCAKFR------FKPLSEEVMSSRVLHIC-N 228
Y+ + N ++ + SR + F+ L +E + +
Sbjct: 108 EPPEYAV-----IVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLL 162
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYL-------QGAARLFGSSITSKDLISVSGVIP 281
E EA + G L ++ L + ++ + ++L+ +
Sbjct: 163 ERDFKTALEAYKLGAEKLSG-LMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVE 221
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAE 310
+ LF + + K+ +I
Sbjct: 222 SKEFFALFDQVTNT---ITGKDAFLLIQR 247
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 5e-09
Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 25/225 (11%)
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++ +L ++ YG GTGKT + +L L K + + +N
Sbjct: 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86
Query: 124 DRGINVVRTKIKTFAAVAVGSG----------QRRGGYPCPPYKIIILDEADSM-TEDAQ 172
V + V V + +I+LDE D+ +
Sbjct: 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND 146
Query: 173 NALRRTMETYSKVTR----FFFICN---YISRIIEPLASRCAKFR--FKPLS----EEVM 219
+ L + S+V + F I N ++ + + S ++ F P + E+++
Sbjct: 147 DILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206
Query: 220 SSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
+ R L + + + L++ GD RRA+ L+ + +
Sbjct: 207 TKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 6e-09
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 29/171 (16%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
HM F G PGTGKTT AL +A L + K ++ + D G + T KT +
Sbjct: 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR 128
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193
G ++ +DEA + ++A L + ME +
Sbjct: 129 AMG-----------GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL-VVILAG 176
Query: 194 YISRIIEPLASR-------CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237
Y R+ S F S+E + H+ +++ + E
Sbjct: 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFYGPPGT 93
+ P V+ RPK + + QE V + L+ LE A H+L GPPG
Sbjct: 3 EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62
Query: 94 GKTTTALAIAHQL 106
GKTT A IA +L
Sbjct: 63 GKTTLAHIIASEL 75
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 1e-07
Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 30/227 (13%)
Query: 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF---GPELYKSRVLELNASD 123
+ VL L + L YG GTGKT A + +L + + +NA
Sbjct: 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88
Query: 124 DRGINVVRTKI----------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----- 168
V + I + V + II+LDE D +
Sbjct: 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGG 148
Query: 169 EDAQNALRRTMETYSKVTRFFFIC-----NYISRIIEPLASRCAKFR--FKPLSEE---- 217
+D + R + + ++ + + S + F P +
Sbjct: 149 QDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRD 208
Query: 218 VMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
++ +R N L+ D + L++ GD RRA+ L+ A +
Sbjct: 209 ILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 35 DEVKRKMAPVLQSSQPWVEK-YRPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFY 88
+ + R + S E RP QE + + L + A H+LF
Sbjct: 2 NAMDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFS 61
Query: 89 GPPGTGKTTTALAIAHQL 106
GP G GKTT A I++++
Sbjct: 62 GPAGLGKTTLANIISYEM 79
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-06
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFYGPPGTGKTTTALAIAHQL 106
RPK + + QE + + L LE A H+L +GPPG GKTT A IAH+L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEK-YRPKQVKDVAHQEEVVRVLTNTLETANCP-----HM 85
KS + +R + E + + QE +E +
Sbjct: 7 KSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAV 66
Query: 86 LFYGPPGTGKTTTALAIAHQL 106
L GPPGTGKT ALAIA +L
Sbjct: 67 LLAGPPGTGKTALALAIAQEL 87
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Length = 377 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-06
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 32/164 (19%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
LF GP +GKTT A A+ G + L +N DR + I F V
Sbjct: 170 RY--WLFKGPIDSGKTTLAAALLELCGG------KALNVNLPLDRLNFELGVAIDQFLVV 221
Query: 141 ---AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR------FFFI 191
G+G P ++ D++ + +++ +E R
Sbjct: 222 FEDVKGTGGESRDLPSGQG----INNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVT 277
Query: 192 CNYISRIIEPLASRCAK---FRFKP-------LSEEVMSSRVLH 225
N + + L +R K FR K SE ++ R++
Sbjct: 278 MN-EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ 320
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Length = 343 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 25/184 (13%), Positives = 52/184 (28%), Gaps = 12/184 (6%)
Query: 156 YKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAK 208
+ ++L ++ L N + + LA+R +
Sbjct: 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQ 136
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS- 267
+ + + V + L LD A L +G+L L+ + L+
Sbjct: 137 VTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGK 196
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLL----SQVTL 323
+T + G A + + EG +LL ++ L
Sbjct: 197 LTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLL 256
Query: 324 LLFV 327
L+ +
Sbjct: 257 LVNL 260
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQL---F----GPEL 111
LFYGPPG GKT A AIA++ F GPEL
Sbjct: 53 LFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-05
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQL---F----GPEL 111
L GPPG GKT A A+A++ F GPEL
Sbjct: 48 LLAGPPGCGKTLLAKAVANESGLNFISVKGPEL 80
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQ-------LFGPEL 111
L YGPPGTGKT A A+A + + G EL
Sbjct: 55 LLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ + R + + +G G GKT AIA++L
Sbjct: 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
+ E + ++ + + K + V QE V V+ H+L G P
Sbjct: 12 LAPREYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIK--TAANQKRHVLLIGEP 69
Query: 92 GTGKTTTALAIAHQLFGPELY 112
GTGK+ A+A L L
Sbjct: 70 GTGKSMLGQAMAELLPTETLE 90
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ +A + YG G GK+ A+AH+L
Sbjct: 138 SAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 37/157 (23%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------DRGINVVRTKIKTF 137
+ F G PG GKT A+A ++ E R + D +KT
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIY--EKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98
Query: 138 AAVAVGSGQRRGGYPCPPYKIIILDE--ADSMTEDAQNAL-----RRTMETYSKVTRFFF 190
+++LD+ ++ +++ + + R Y+ +
Sbjct: 99 LN----------------SPVLVLDDLGSERLSDWQRELISYIITYR----YNNLKSTII 138
Query: 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
NY + E + R + L E V+ S++ +
Sbjct: 139 TTNYSLQREEESSVRISADLASRLGENVV-SKIYEMN 174
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 85 MLFYGPPGTGKTTTALAIAHQ 105
+L YGPPGTGK+ A A+A +
Sbjct: 54 ILLYGPPGTGKSYLAKAVATE 74
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 85 MLFYGPPGTGKTTTALAIAHQ 105
+L +GPPGTGKT IA Q
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQ 140
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Length = 800 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 8e-04
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-----------DDRGINV 129
P L GPPGTGKT T+ I + L VL S G+ V
Sbjct: 370 QRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427
Query: 130 VR 131
VR
Sbjct: 428 VR 429
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 30/109 (27%)
Query: 85 MLFYGPPGTGKTTTALAIAHQL---F----GPELYKSRVLELNASDDRGINVVRTKIKTF 137
+ +G G GK+ + ++ EL E ++R + +
Sbjct: 39 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-------PAKLIRQRYREA 91
Query: 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186
A + R G C + +++ D+ A R T V
Sbjct: 92 AEII------RKGNMC----CLFINDLDAG------AGRMGGTTQYTVN 124
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 85 MLFYGPPGTGKTTTALAIAHQ 105
+L +GPPGTGK+ A A+A +
Sbjct: 48 ILLFGPPGTGKSYLAKAVATE 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 100.0 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 100.0 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 100.0 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 100.0 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 100.0 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 100.0 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 100.0 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.97 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.97 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 99.97 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.96 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.96 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.94 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.94 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.93 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.93 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.92 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.91 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.91 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.89 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.88 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.88 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.88 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.87 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.87 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.86 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.86 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 99.86 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.86 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.85 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.85 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.85 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.85 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 99.85 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 99.85 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.85 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.85 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.84 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.84 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.84 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.84 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.83 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.83 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 99.83 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.82 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.82 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.82 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.82 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.8 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.8 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.79 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.78 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.78 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.77 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.76 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.76 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.75 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.74 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.74 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.74 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.74 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.74 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.73 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.72 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.72 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.72 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.69 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.67 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.67 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.66 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.66 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.66 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.64 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.63 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.61 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.61 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.59 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.57 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.56 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.51 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.49 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 99.48 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.47 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.42 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.4 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 99.35 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 99.23 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 99.2 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 99.2 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 99.19 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.18 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 99.16 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.1 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 99.09 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.87 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.85 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 98.82 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 98.63 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.59 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.55 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.5 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.5 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.4 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 98.32 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 98.31 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 98.16 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.15 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 98.09 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.06 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.89 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 97.82 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.8 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.75 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 97.74 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 97.73 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.71 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.68 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.64 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.61 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.61 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.61 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.54 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.51 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 97.49 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.48 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.46 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 97.44 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 97.43 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.37 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.36 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.36 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.35 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.34 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.33 | |
| 1jql_B | 140 | DNA polymerase III, delta subunit; processivity cl | 97.31 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.29 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.29 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.28 | |
| 3ctd_A | 213 | Putative ATPase, AAA family; structural genomics, | 97.28 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 97.26 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.25 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.25 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.2 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.19 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.18 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.16 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 97.15 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 97.14 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.14 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.13 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 97.12 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 97.11 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 97.11 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.11 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 97.11 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.1 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 97.09 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.09 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.09 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.09 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.07 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.07 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 97.07 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.06 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.05 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.02 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 97.02 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.0 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.0 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.0 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.98 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 96.98 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.98 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.98 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.95 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 96.95 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.94 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.94 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.93 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.93 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.93 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.91 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.91 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.91 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.9 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.9 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.9 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.89 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.89 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.86 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.86 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.85 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.85 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 96.85 | |
| 3bge_A | 201 | Predicted ATPase; structural genomics, predicted A | 96.85 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.84 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 96.8 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.8 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 96.79 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.78 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.78 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.78 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.76 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.76 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.75 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 96.73 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 96.73 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.73 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.71 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.71 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.71 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.71 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.71 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.68 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 96.66 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 96.65 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.64 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.64 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 96.64 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 96.63 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.63 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.63 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.63 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.62 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 96.61 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.6 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 96.6 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.59 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.59 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.59 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.58 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 96.58 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.58 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.57 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.56 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.55 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 96.55 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.54 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.53 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.53 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.53 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 96.53 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.52 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.52 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.5 | |
| 2r9g_A | 204 | AAA ATPase, central region; structural genomics, P | 96.5 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 96.49 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.49 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.48 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.46 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.44 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.42 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.42 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.39 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.39 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.38 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.38 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.38 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.38 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 96.37 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.36 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 96.36 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.36 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 96.33 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.33 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.33 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.32 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.31 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 96.3 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.29 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 96.28 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 96.28 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 96.25 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.24 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.22 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 96.22 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.18 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.18 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 96.17 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.16 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.14 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.14 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.12 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.12 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.1 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.09 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.08 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.08 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.08 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.07 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.07 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.06 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.06 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.06 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.04 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.03 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.03 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.02 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.01 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.01 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.01 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.0 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 95.99 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.99 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.98 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.98 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.97 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.95 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.95 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.94 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.94 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.94 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.94 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.92 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 95.92 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.92 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 95.92 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.91 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.89 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 95.89 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.89 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.88 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 95.88 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 95.85 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.84 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.82 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.82 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.82 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 95.82 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.8 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.79 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.79 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.79 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 95.78 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.78 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.78 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.77 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 95.77 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.76 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.76 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 95.75 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.74 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.72 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.71 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.7 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 95.69 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.69 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.66 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 95.65 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 95.65 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.62 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.62 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.61 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.57 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 95.57 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.56 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.55 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.54 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 95.54 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 95.53 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.5 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.5 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.48 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 95.47 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.47 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.47 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.45 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.44 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.42 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 95.4 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.38 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.36 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.36 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 95.35 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 95.33 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.31 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.3 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.3 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 95.3 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 95.3 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.29 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 95.28 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.27 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.27 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.27 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 95.25 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.23 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 95.23 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.23 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 95.22 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 95.22 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.21 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 95.21 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 95.19 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 95.19 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.18 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 95.17 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 95.16 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 95.16 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 95.14 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.13 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.09 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.09 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.08 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 95.08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 95.07 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.04 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 95.02 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.02 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 95.01 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 94.99 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 94.98 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 94.97 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.96 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.95 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.95 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 94.92 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.92 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 94.91 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.9 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 94.88 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.88 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.87 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.87 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.87 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 94.86 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 94.85 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 94.85 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.84 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 94.83 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 94.82 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 94.82 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 94.82 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 94.82 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 94.82 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 94.81 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.8 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 94.8 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 94.79 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 94.79 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 94.79 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 94.79 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 94.79 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.77 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 94.76 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 94.75 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 94.74 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 94.74 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 94.7 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.69 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 94.67 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.67 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 94.64 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.63 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.63 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 94.6 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.6 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.59 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 94.56 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 94.55 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.54 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 94.52 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.51 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 94.5 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.49 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.47 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.47 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 94.46 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.44 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.44 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.44 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 94.44 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.42 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 94.42 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 94.41 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.4 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 94.4 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 94.39 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.39 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.39 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 94.36 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.35 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.33 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.33 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.32 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 94.31 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 94.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 94.29 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 94.27 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.25 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.25 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.25 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 94.24 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 94.24 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.21 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 94.2 |
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=280.37 Aligned_cols=273 Identities=38% Similarity=0.662 Sum_probs=242.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...||.++|+|.+|++++|+++++..+..++..+..++++|+||||||||++++++++.+.+... ...+.++++++..+
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRG 89 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCS
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCccccc
Confidence 45699999999999999999999999999999999888999999999999999999999865432 34577788877666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
.+.+++.+..+..... ...+.+++++|||+|.++.+.++.|++++++++..+.+|+++|...++.+++.+||
T Consensus 90 ~~~ir~~i~~~~~~~~--------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 90 IDVVRNQIKDFASTRQ--------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHTHHHHHHHBCC--------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHhhcc--------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 7777766655543210 11134789999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHhhCCCCH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIPP 282 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~----~it~~~v~~~~~~~~~ 282 (345)
..+.|.+++.+++..++..+++.+++.+++++++.+++.++||+|.+++.++.++.+++. .||.++|.++++....
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCH
Confidence 999999999999999999999989999999999999999999999999999988766542 6999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Q 019145 283 EVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 283 ~~~~~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~~~~~ 328 (345)
..++++++++.+++...++..+..++. .|++|..|+..|.++++.+
T Consensus 242 ~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~ 288 (340)
T 1sxj_C 242 SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY 288 (340)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998 9999999999999988764
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=276.47 Aligned_cols=271 Identities=46% Similarity=0.785 Sum_probs=237.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...||.++|+|.+|++++|+++.+..+..++..+..++++|+||||||||++++++++.+.+... ...++.+++++..+
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERG 81 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTC
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccC
Confidence 45699999999999999999999999999999988888999999999999999999999855432 34577888877655
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...++..+..+..... ...+++++++|||+|.++.+.++.|++++++++..+.+|+++|...++.+++.+||
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp TTTSSHHHHHHHHSCC--------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred hHHHHHHHHHHHhcCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 5555554444431110 11235789999999999999999999999998889999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~ 286 (345)
..+.|++++.+++..++..++..+|+.+++++++.+++.++||+|.+++.++.++.. ++.||.++|.++++......++
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~ 232 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMT 232 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHHHHHHHTTCCCHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999998865 5679999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Q 019145 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 287 ~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~~~~ 327 (345)
++++++..++...++..+.+++. .|++|..++..+.+++++
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~ 274 (319)
T 2chq_A 233 ELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIIS 274 (319)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998 999999999999999886
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=278.07 Aligned_cols=282 Identities=52% Similarity=0.872 Sum_probs=239.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+..||.++|+|.+|++++|+++.+..+..++..+..++++|+||||||||++++++++.+.++......+..+++.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 56679999999999999999999999999999998878899999999999999999999975432234567888887766
Q ss_pred chHHHHHHHHHHHHhhhcCCCC--CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 126 GINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
+...+...+..+.......... ......+.+++|+|||++.++...++.|++++++++..+.+|+++|.+..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 6666665555544321110000 00011235689999999999999999999999998888999999999999999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHhhC
Q 019145 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~-----~it~~~v~~~~~ 278 (345)
+||..+.|.+++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.+++. .||.++|.++++
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998877643 699999999999
Q ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
......++++++++.+++...++..+.++...|++|..|++.+.+++.+
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 310 (353)
T 1sxj_D 262 VVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT 310 (353)
T ss_dssp CCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9989999999999999999999999999999999999999999988765
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=273.86 Aligned_cols=272 Identities=45% Similarity=0.763 Sum_probs=237.9
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
....||.++|+|.+|++++|+++.+..+..++..+..++++|+||||||||++++++++.+.+.. ....++.+++.+..
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDER 88 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHH
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccC
Confidence 45679999999999999999999999999999999888899999999999999999999975432 12457778887755
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r 205 (345)
+...++..+..+...... ..+++++|+|||++.++.+.++.|++++++++..+.+|+++|....+.+++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~--------~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 89 GINVIREKVKEFARTKPI--------GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHTTHHHHHHHHHSCCG--------GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred chHHHHHHHHHHHhhCCc--------CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 555555545444321110 113568999999999999999999999999888999999999999999999999
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~ 285 (345)
|..+.|+|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.. ...||.++|.+.++...+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 239 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVASRARPEDI 239 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHTTCCCHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988754 446999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Q 019145 286 EGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 286 ~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~~~ 327 (345)
+++++++..++...++..+.+++ ..|++|..+++.|.+++++
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~ 282 (327)
T 1iqp_A 240 REMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN 282 (327)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999 8999999999999998876
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=271.05 Aligned_cols=274 Identities=24% Similarity=0.331 Sum_probs=239.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
+..+|.++|+|.+|++++|+++.+..+..++..+..++ ++|+||+|||||++++++++.+.+....
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CcHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 35689999999999999999999999999999888766 6999999999999999999998664321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...++.+++....+.+.++..+..+... ...+++.+|+|||+|.++...++.|++++++++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~ 151 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSC----------CSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEE
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhc----------cccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceE
Confidence 1134555554434444455544443211 1234568999999999999999999999999888999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++....+.+.+.+||..+.|++++.+++..++..+++.+|+.+++++++.+++.++||+|.+.+.++++..+.++.
T Consensus 152 ~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 231 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 (373)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTC
T ss_pred EEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999998877788
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++......++++++++..++...++..+..+...|+++..++..+.+++++++.
T Consensus 232 i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~ 294 (373)
T 1jr3_A 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 (373)
T ss_dssp BCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998864
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=267.12 Aligned_cols=264 Identities=25% Similarity=0.370 Sum_probs=219.0
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
....||.++|+|.+|++++|+++.+..+..++..+..+++ +++||||||||++++++++.+ +..++++++++.
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~ 84 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDC 84 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTC
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEccccc
Confidence 5677999999999999999999999999999999888775 777889999999999999998 678999998774
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
+...++..+..+.... ...+.+++|+|||+|.++ ++.++.|+++++.++.++.+|+++|...++.+++.
T Consensus 85 -~~~~i~~~~~~~~~~~---------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 85 -KIDFVRGPLTNFASAA---------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp -CHHHHHTHHHHHHHBC---------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred -CHHHHHHHHHHHHhhc---------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 4666666665544332 122367899999999999 99999999999998889999999999999999999
Q ss_pred ccceeEEecCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 204 SRCAKFRFKPLSEEV-------MSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~-------~~~~l~~~~~~~~~~i~~-~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (345)
+||.++.|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|+.++ .++.||.++|.+
T Consensus 155 sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~--~~~~i~~~~v~~ 232 (324)
T 3u61_B 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS--SKGVLDAGILSL 232 (324)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--GGTCBCC-----
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--ccCCCCHHHHHH
Confidence 999999999999877 455666777889999988 9999999999999999999999988 456699999999
Q ss_pred hhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
+... .+.++.+++++..++...++..+.+++. +|..|++.|..++.+.+-.+
T Consensus 233 ~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~ 284 (324)
T 3u61_B 233 VTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQ 284 (324)
T ss_dssp ---------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHH
T ss_pred HhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHH
Confidence 8765 5678999999999999999999999987 89999999988887654333
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=258.84 Aligned_cols=271 Identities=38% Similarity=0.615 Sum_probs=235.1
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+..||.++|+|..|++++|++..+..+..++..+..++++|+||+|+|||++++.+++.+.+.. ....++++++.+..
T Consensus 6 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDR 84 (323)
T ss_dssp -CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCC
T ss_pred cccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCcccc
Confidence 34679999999999999999999999999999999888899999999999999999999975432 13457788887766
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r 205 (345)
+...+++.+..+...... ...+++.+|+|||++.++...++.|++++++++..+.+|++++....+.+++.+|
T Consensus 85 ~~~~i~~~~~~~~~~~~~-------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 85 GIDVVRNQIKHFAQKKLH-------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp SHHHHHTHHHHHHHBCCC-------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred ChHHHHHHHHHHHhcccc-------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 666676666654421100 0123478999999999999999999999999888999999999999999999999
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~ 285 (345)
|..+.|++++.+++..++..++..+|+.+++++++.+++.++||+|.+++.+++++.. .+.|+.++|.++++......+
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 236 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNADNVFKIVDSPHPLIV 236 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHHHHHHHHTSCCHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988854 356999999999999999899
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHH
Q 019145 286 EGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 286 ~~l~~~~~~~~~~~a~~~l~~-l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
++++++ ++...++..+.. ++..|+++..++..+.++++++
T Consensus 237 ~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l 277 (323)
T 1sxj_B 237 KKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNL 277 (323)
T ss_dssp HHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999887 888999999998 8889999999999998887763
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=265.54 Aligned_cols=262 Identities=22% Similarity=0.301 Sum_probs=220.7
Q ss_pred cchhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..||+++++|.+|++++|+++++ ..+...+..+..++++|+||||||||++|+++++.+ +..++.+++..
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~- 85 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVT- 85 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTT-
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEecc-
Confidence 36999999999999999999999 899999999998889999999999999999999998 66788888765
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhh
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPL 202 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l 202 (345)
.+...++..+........ .+...+|||||+|.++...++.|+..+++ ..+.+|+++ |....+.+++
T Consensus 86 ~~~~~ir~~~~~a~~~~~----------~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRN----------AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp CCHHHHHHHHHHHHHHHH----------TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred CCHHHHHHHHHHHHHhhh----------cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 455666666655443321 13467999999999999999999999997 345666665 5556789999
Q ss_pred hccceeEEecCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC------CCCC
Q 019145 203 ASRCAKFRFKPLSEEVMSSRVLHICNE-------EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG------SSIT 269 (345)
Q Consensus 203 ~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~------~~it 269 (345)
.+||.++.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+.++..+. ..||
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It 233 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECC
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccC
Confidence 999999999999999999999999886 557799999999999999999999999999998874 2599
Q ss_pred HHHHHHhhCCCC----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 270 SKDLISVSGVIP----------PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 270 ~~~v~~~~~~~~----------~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
.++|.++++... ++.++.+++++.+++.++|+..+.+|++.|++|..|++.|.+....-
T Consensus 234 ~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 234 PELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp HHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999999998753 46788999999999999999999999999999999999998877654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=259.09 Aligned_cols=276 Identities=30% Similarity=0.481 Sum_probs=211.6
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHH-HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY---------------- 112 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l-~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~---------------- 112 (345)
||++||+|.+|++++|++.++..+..++ ..+..++++|+||+|+||||+++++++++.++...
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 7999999999999999999999999999 87877789999999999999999999987554321
Q ss_pred -------CCceeeeecCCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC
Q 019145 113 -------KSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (345)
Q Consensus 113 -------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~ 183 (345)
...++++++.+..... .+++.+..+.................++++++|||++.++...++.|++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ---CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1123445443321111 2444444432211000000000013467899999999999999999999999988
Q ss_pred CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
.++.+|++|+....+.+++.+||..+.|++++.+++.+++..+++++|+.++ +++++.+++.++||+|.+++.++.++.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 999999999999999999999999987
Q ss_pred HhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDF----DLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~----~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
+.+..||.+++ +........++++++++..++. ..+...+.+++..|+++..|+..+..++.+
T Consensus 243 ~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 309 (354)
T 1sxj_E 243 NNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLD 309 (354)
T ss_dssp TTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTT
T ss_pred hCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 76546776654 2223334678999999987543 445556677788999999999888776554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=214.74 Aligned_cols=223 Identities=52% Similarity=0.880 Sum_probs=190.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...||.++|+|..|++++|++..+..+..++..+..++++|+||+|||||++++.+++.+.+. .....++.+++....+
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERG 81 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTC
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccC
Confidence 456899999999999999999999999999999887789999999999999999999987432 2245677788877666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...+...+..+..... .....+.+|+|||++.+....++.|+.+++..+..+.+|+++|....+.+++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHHHHHHHHTSCC--------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hHHHHHHHHHHhcccC--------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 5555555444332210 11235679999999999999999999999998888899999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (345)
..+.|++++.+++..++..++...+..+++++++.+++.++||+|.+++.++.++..+ +.||.++|+++++.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~v~~~~~~ 225 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADTIYQITAT 225 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHHHHHHHHT
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998765 67999999988753
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=223.06 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=191.8
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-ccchHHHHHHHHHHHHhhhc
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAVG 143 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 143 (345)
||+++++.|.+.++.+..+++||+||||+|||++++++++.+........++.++++.+ ..+.+.+++.+..+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p-- 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP-- 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc--
Confidence 68889999999999988667899999999999999999986421111345778888764 577778888776654322
Q ss_pred CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 144 ~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
..++++|+||||+|.++...++.|++++|++++++.+|++|+.+.++.+++++| ++.|.+++.+++.+|+
T Consensus 79 --------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L 148 (305)
T 2gno_A 79 --------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLV 148 (305)
T ss_dssp --------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHH
T ss_pred --------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHH
Confidence 234678999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHhhCCCCHH--HHHHHHHHHHc
Q 019145 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-------FGSSITSKDLISVSGVIPPE--VVEGLFAVCRS 294 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~-------~~~~it~~~v~~~~~~~~~~--~~~~l~~~~~~ 294 (345)
...+ + ++++++ +.+.||+|.+++.++..... ...--+.++|.++++...+. .+|++++++.+
T Consensus 149 ~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~ 219 (305)
T 2gno_A 149 KEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSK 219 (305)
T ss_dssp HHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHC
Confidence 9887 3 566665 55799999999888632211 01111467888888877754 89999999999
Q ss_pred CCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Q 019145 295 GDFDLANKEVNNIIA--EGYPASLLLSQVTLLLF 326 (345)
Q Consensus 295 ~~~~~a~~~l~~l~~--~g~~~~~i~~~l~~~~~ 326 (345)
++...|+..+.+|+. .|++|..++..+.+.+.
T Consensus 220 ~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~ 253 (305)
T 2gno_A 220 VESKEFFALFDQVTNTITGKDAFLLIQRLTRIIL 253 (305)
T ss_dssp SCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 999999999999998 89988666655555444
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=228.39 Aligned_cols=243 Identities=13% Similarity=0.073 Sum_probs=204.2
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCC
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
+.+.++....+.++|+||+|+||++.+..+++.+.+.++....++++++. ..+++.+......+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~plf--------- 74 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----TDWNAIFSLCQAMSLF--------- 74 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----CCHHHHHHHHHHHHHC---------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----CCHHHHHHHhcCcCCc---------
Confidence 34445533344479999999999999999999886543222234444431 2334444443333322
Q ss_pred CCCeEEEEEcCCCC-CCHHHHHHHHHHHhhcCCceEEEEecCc------ccccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 153 CPPYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNY------ISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 153 ~~~~~iliiDE~~~-l~~~~~~~l~~~le~~~~~~~ii~~~n~------~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
+++++++|||++. ++++.++.|+++++++++++.+|++++. ..++.+++.+||.++.|.+++.+++..|+..
T Consensus 75 -~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 75 -ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp -CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred -cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 4678999999999 9999999999999999999999988865 3568899999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHH
Q 019145 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304 (345)
Q Consensus 226 ~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l 304 (345)
+++++|+.+++++++.+++.++||+|.+.+++++++.+. ++.||.++|.++++......+|++++++.+++...++..+
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l 233 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHIL 233 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999876 4579999999999888888999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 305 NNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 305 ~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
..+...|++|..|++.|.+++++++.
T Consensus 234 ~~l~~~g~~~~~il~~l~~~~r~l~~ 259 (343)
T 1jr3_D 234 QQLRLEGSEPVILLRTLQRELLLLVN 259 (343)
T ss_dssp TSSTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=207.34 Aligned_cols=222 Identities=26% Similarity=0.381 Sum_probs=180.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
...+|.++|+|..|++++|++..+..+..++..+..++ ++|+||+|+|||++++.+++.+.+....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45689999999999999999999999999998877655 7999999999999999999988543211
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...++.++.........+...+..+.. .....++.+|+|||++.++...++.|++.+++.+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC----------SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhh----------chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceE
Confidence 012344444432233333322222110 01123567999999999999999999999998888889
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++....+.+.+.+|+..+.|++++.+++.+++..++...+..+++++++.+++.++|++|.+.+.++.+..+..+.
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~ 238 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 238 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCce
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999998776678
Q ss_pred CCHHHHHHhhC
Q 019145 268 ITSKDLISVSG 278 (345)
Q Consensus 268 it~~~v~~~~~ 278 (345)
||.++|+++++
T Consensus 239 i~~~~v~~~~~ 249 (250)
T 1njg_A 239 VSTQAVSAMLG 249 (250)
T ss_dssp BCHHHHHHHSC
T ss_pred ecHHHHHHHhC
Confidence 99999998875
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=227.26 Aligned_cols=241 Identities=25% Similarity=0.367 Sum_probs=183.3
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------------ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
....+|+++|+|.+|++++|++..+..+..|+.. +..++++|+||||||||++|+++++++
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 4667899999999999999999999999999875 123569999999999999999999998
Q ss_pred CCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCC----CCCCCCCeEEEEEcCCCCCCHHH---HHHHHHHHhh
Q 019145 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR----GGYPCPPYKIIILDEADSMTEDA---QNALRRTMET 181 (345)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iliiDE~~~l~~~~---~~~l~~~le~ 181 (345)
+..++++++++......+...+........-..... .......+.+|+|||+|.++... .+.|.++++.
T Consensus 102 ----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 102 ----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp ----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred ----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 678999999886665444333222111000000000 00122456899999999997643 4778888887
Q ss_pred cCCceEEEEecCccc-ccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 182 YSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~-~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
.. ..+|++++... ...+++.+||..+.|++|+.+++.+++..++..+++.++++++..|++.++||+|.+++.++.+
T Consensus 178 ~~--~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 178 TS--TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp CS--SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred cC--CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43 34666665432 3446788999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhCCCCCHHHHHHhhC---CCCHHHHHHHHHHHHcC
Q 019145 261 ARLFGSSITSKDLISVSG---VIPPEVVEGLFAVCRSG 295 (345)
Q Consensus 261 ~~~~~~~it~~~v~~~~~---~~~~~~~~~l~~~~~~~ 295 (345)
+. .+..|+.+++.+++. ......+|++++.+..+
T Consensus 256 ~~-~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 256 ST-TTKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp HH-HSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred Hh-cCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 74 456799999887765 44555788888888764
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=205.18 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=154.5
Q ss_pred cccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceeeeecC--
Q 019145 64 AHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS-- 122 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~~~~~-- 122 (345)
.-+++.++.+...+..++.++ ++|+||+|+|||++|+++++.+.|.... ..++..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 346778889999999998888 7999999999999999999999876432 1456667664
Q ss_pred -CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchh
Q 019145 123 -DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~ 201 (345)
...+.+.+++.+..+... +..++++|+||||+|.++.+.++.|++.+|+++.++.+|++++.+.++.++
T Consensus 85 ~~~~~i~~ir~l~~~~~~~----------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEH----------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSC----------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred CCCCCHHHHHHHHHHHhhc----------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 345666777666554322 123467899999999999999999999999999999999999999999999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
+++||..+.|++++.+++.+++...+ .++++++..+++.++||+|.+++.++...
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDN 209 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHH
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccch
Confidence 99999999999999999999997664 67899999999999999999999997665
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=201.40 Aligned_cols=209 Identities=18% Similarity=0.219 Sum_probs=168.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
....|.++|+|.+|++++|++..+..+..++.. ...++++|+||||||||++|+++++.+ +..++.+++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~~ 88 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTAA 88 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEEG
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEecc
Confidence 445799999999999999999999999888864 344579999999999999999999997 667888887
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC-----------------
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK----------------- 184 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~----------------- 184 (345)
........+...+.. .+...+|+|||++.++...++.|++.+++...
T Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 89 PMIEKSGDLAAILTN----------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp GGCCSHHHHHHHHHT----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred hhccchhHHHHHHHh----------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 654443333333222 12446999999999999999999999987431
Q ss_pred -ceEEEEecCcccccchhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 185 -VTRFFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 185 -~~~ii~~~n~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
.+.+|.++|....+.+++.+|+ ..+.|++|+.+++..++...+...++.+++++++.+++.++||+|.+.+.++.+..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2678889999999999999999 58999999999999999999999999999999999999999999999999998754
Q ss_pred Hh----CCCCCHHHHHHhh
Q 019145 263 LF----GSSITSKDLISVS 277 (345)
Q Consensus 263 ~~----~~~it~~~v~~~~ 277 (345)
.+ +..|+.+++..++
T Consensus 233 ~a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHHTTCSEECHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHH
Confidence 43 4559999887665
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=195.41 Aligned_cols=224 Identities=21% Similarity=0.265 Sum_probs=167.5
Q ss_pred cCcchhhhhhCCCC-CccccccHHHHHH---HHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 46 QSSQPWVEKYRPKQ-VKDVAHQEEVVRV---LTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 46 ~~~~~~~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
....++.++++|.. |++++|++..+.. +...+..+..+ +++|+||||||||++|+++++.+.+ ..+++.+
T Consensus 28 ~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~ 103 (368)
T 3uk6_A 28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAI 103 (368)
T ss_dssp CCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEE
T ss_pred hhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccc
Confidence 45567788999998 9999999888765 55666666654 6999999999999999999999843 2244444
Q ss_pred ecCCcc--------------------------------------------------c-----hHHHHHHHHHHHHhhhcC
Q 019145 120 NASDDR--------------------------------------------------G-----INVVRTKIKTFAAVAVGS 144 (345)
Q Consensus 120 ~~~~~~--------------------------------------------------~-----~~~~~~~~~~~~~~~~~~ 144 (345)
++.... + ...++..+..........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3uk6_A 104 AGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183 (368)
T ss_dssp EGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhh
Confidence 432100 0 122222222222111100
Q ss_pred CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEec
Q 019145 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFK 212 (345)
Q Consensus 145 ~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~ 212 (345)
+ .....+.+|||||++.++.+.++.|++.+++....+ ++++++ .+..+++++.+||..+.|+
T Consensus 184 g-----~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~ 257 (368)
T 3uk6_A 184 G-----KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 257 (368)
T ss_dssp T-----C---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEEC
T ss_pred c-----cccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEec
Confidence 0 000113599999999999999999999999876654 344443 3567889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhCC
Q 019145 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-GDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~-g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
+|+.+++..+++.++...++.+++++++.+++.+. ||+|.+++.++.++..+ ...||.++|.+++..
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999887665 357999999988764
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=191.50 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=166.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
+.++|+|.+|++++|++..+..+..++.. ....+++|+||||||||++|+++++.+ +..++.+++....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~------~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIE 75 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH------TCCEEEECTTTCC
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccC
Confidence 45789999999999999999888887753 344579999999999999999999998 5667777776654
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceE
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~ 187 (345)
....+...+.. ..+...+|+|||++.++...++.|+..+++.. ..+.
T Consensus 76 ~~~~l~~~l~~---------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 76 KPGDLAAILAN---------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp SHHHHHHHHTT---------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ChHHHHHHHHH---------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 43333222111 01244699999999999999999999998743 2467
Q ss_pred EEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--
Q 019145 188 FFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-- 264 (345)
+|+++|....+.+++.+|+. ++.|++|+.+++..++...+...+..+++++++.++++++|++|.+.+.++.+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 88889988889999999995 899999999999999999999889999999999999999999999999998887554
Q ss_pred --CCCCCHHHHHHhh
Q 019145 265 --GSSITSKDLISVS 277 (345)
Q Consensus 265 --~~~it~~~v~~~~ 277 (345)
...|+.+++..+.
T Consensus 221 ~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 221 AGEEVITRERALEAL 235 (324)
T ss_dssp TSCSCCCHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH
Confidence 3469998887654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-23 Score=182.78 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=161.0
Q ss_pred ccccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 43 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
++..-.+.|.++++|.+|++++|++.++..+...+..+ ...+++|+||||+||||+++++++.+ +..+.
T Consensus 7 ~~~~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l------~~~~~ 80 (334)
T 1in4_A 7 PERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL------QTNIH 80 (334)
T ss_dssp ----------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH------TCCEE
T ss_pred cchHHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 33345567899999999999999999998888877643 34569999999999999999999998 33444
Q ss_pred eeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--------------
Q 019145 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------- 183 (345)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------- 183 (345)
..++........+....... ...++++|||++.+.+...+.|+..++...
T Consensus 81 ~~sg~~~~~~~~l~~~~~~~----------------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 81 VTSGPVLVKQGDMAAILTSL----------------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp EEETTTCCSHHHHHHHHHHC----------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC-----------
T ss_pred EEechHhcCHHHHHHHHHHc----------------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccc
Confidence 44444322222222221110 133599999999999888888887776532
Q ss_pred ----CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 184 ----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 184 ----~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
..+.++.+++.+..+.+.+++||. .+.|++++.+++.+++++.++..++.++++++..|++.+.|++|.+.+.|+
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 124556677888899999999997 689999999999999999999889999999999999999999999999998
Q ss_pred HHHHHh----CCCCCHHHHHHhhC
Q 019145 259 GAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~ 278 (345)
.+..++ .+.||.+++.+++.
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 776554 35699999988764
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=179.29 Aligned_cols=211 Identities=12% Similarity=0.166 Sum_probs=163.2
Q ss_pred CcchhhhhhCC-CCCccccc---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 47 SSQPWVEKYRP-KQVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p-~~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|..+++| .+|+++++ +...+..+..++..+...+++|+||||||||++++++++.+... +..+..+++.
T Consensus 13 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~ 89 (242)
T 3bos_A 13 LQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLG 89 (242)
T ss_dssp CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred hhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHH
Confidence 34578889998 79999996 36788889988887777789999999999999999999988433 3455556554
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH--HHHHHHHHhhcCC--ceEEEEecCccc--
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYSK--VTRFFFICNYIS-- 196 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~--~~~l~~~le~~~~--~~~ii~~~n~~~-- 196 (345)
+.... +...+. ......+|+|||++.+.... ++.|+.+++.... ...+|++++...
T Consensus 90 ~~~~~--~~~~~~----------------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 90 IHASI--STALLE----------------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp GGGGS--CGGGGT----------------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred HHHHH--HHHHHH----------------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 32110 000110 01234699999999997654 7778888775432 224777776433
Q ss_pred --ccchhhhccc---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCC
Q 019145 197 --RIIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSI 268 (345)
Q Consensus 197 --~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~i 268 (345)
...+.+.+|+ ..+.|++|+.+++..++..++...++.+++++++.+++.++||+|.+.+.++.+..++ +..|
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~I 231 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKL 231 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3558899999 7999999999999999999999999999999999999999999999999999888765 6679
Q ss_pred CHHHHHHhhC
Q 019145 269 TSKDLISVSG 278 (345)
Q Consensus 269 t~~~v~~~~~ 278 (345)
|.++|.+++.
T Consensus 232 t~~~v~~~l~ 241 (242)
T 3bos_A 232 TIPFVKEMLR 241 (242)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 9999988764
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=188.45 Aligned_cols=123 Identities=23% Similarity=0.286 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec---------Cc----ccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---------NY----ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 157 ~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~---------n~----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
+|+||||++.++.+.++.|++.+|+++.. .+|+.+ .. +..+++++++||..+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 59999999999999999999999998877 566666 33 67789999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhCCC
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF---G-SSITSKDLISVSGVI 280 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~~ 280 (345)
+.++..+++.++++++..++..+ .|++|.+++.++.+..++ + ..|+.++|.++.+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999875554 3 569999999987654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=177.84 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=149.5
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|.++++|.+|++++|++.+++.+..++.. ....++||+||||||||++|+++++++ +..++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~~ 177 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATFF 177 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcEE
Confidence 588899999999999999999999888732 224569999999999999999999997 67888
Q ss_pred eeecCCccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHh
Q 019145 118 ELNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le 180 (345)
.+++....+. ..+...+..... ....+|||||+|.+. ...++.|+..++
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~--------------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARE--------------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHH--------------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHh--------------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 8888764332 112222222211 123699999999882 345567777776
Q ss_pred hc----CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 019145 181 TY----SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 181 ~~----~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
.. +..+.+|.++|.+..+.+++.+||. .+.|+.|+.++...++..++...+..++++.+..+++.+.|..+..++
T Consensus 244 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 244 GVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp HHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 43 3457788899999999999999997 799999999999999999999999999999999999999998886666
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.|...+
T Consensus 324 ~L~~~a 329 (389)
T 3vfd_A 324 ALAKDA 329 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664433
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=168.73 Aligned_cols=212 Identities=24% Similarity=0.249 Sum_probs=158.8
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|.+++.|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ +..++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~ 83 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFL 83 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeE
Confidence 366788899999999999999999887743 234569999999999999999999998 56778
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHh
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le 180 (345)
.+++....+ ....+..+..... ....+|+|||++.+. ...++.|+..++
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARH--------------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHH--------------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHH--------------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 888765322 1222222222211 134699999998873 345667888887
Q ss_pred hcC-----CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 019145 181 TYS-----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 181 ~~~-----~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~ 254 (345)
..+ ..+.+|.+||.+..+.+++.+||. .+.+++|+.++...++..++...+..++++.+..+++.+.|..+..+
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 654 346788889999999999999996 78999999999999999999888888999999999999999887655
Q ss_pred HHH-HHHHHHh----------------CCCCCHHHHHHhhCCCC
Q 019145 255 TYL-QGAARLF----------------GSSITSKDLISVSGVIP 281 (345)
Q Consensus 255 ~~l-~~~~~~~----------------~~~it~~~v~~~~~~~~ 281 (345)
..+ +.++..+ ...|+.+|+..++....
T Consensus 230 ~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 230 TALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 444 4433222 13478888877766543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=177.09 Aligned_cols=275 Identities=19% Similarity=0.187 Sum_probs=182.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeee
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLEL 119 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~ 119 (345)
...+|..+|.| ++++|++..+..+..++.. +...+++|+||||||||++++.+++.+... ...+..++.+
T Consensus 8 ~~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 8 KRWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp CHHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 34466677777 6789999999999988854 445679999999999999999999987321 0124677888
Q ss_pred ecCCccchHHH-HHHHHHHHHhhhcCCCCC---------CCCCCCCeEEEEEcCCCCCCHH--HHHHHHHHHhhc-----
Q 019145 120 NASDDRGINVV-RTKIKTFAAVAVGSGQRR---------GGYPCPPYKIIILDEADSMTED--AQNALRRTMETY----- 182 (345)
Q Consensus 120 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~iliiDE~~~l~~~--~~~~l~~~le~~----- 182 (345)
++....+...+ ...+..+.......+... .....+.+.+|+|||++.+... .++.|..+++..
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 87664433222 111111100000000000 0001234679999999999765 667776666543
Q ss_pred CCceEEEEecCcc---cccchhhhccc--eeEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC---CCHHH
Q 019145 183 SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRR 252 (345)
Q Consensus 183 ~~~~~ii~~~n~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~s~---g~~r~ 252 (345)
...+.+|+++|.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARR 244 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHH
Confidence 4567788888876 67888999999 58999999999999999999876 456789999999999998 99999
Q ss_pred HHHHHHHHHHHh---C-CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Q 019145 253 AITYLQGAARLF---G-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 253 ~~~~l~~~~~~~---~-~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l-~~~g~~~~~i~~~l~~~~~~ 327 (345)
+++.++.++..+ + ..|+.+++.+++..... ..+.+.+.+-+......++.-+ ...|.++ .....+.+.+..
T Consensus 245 ~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~---~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~-~~~~~~~~~~~~ 320 (387)
T 2v1u_A 245 ALDLLRVAGEIAERRREERVRREHVYSARAEIER---DRVSEVVRTLPLHAKLVLLSIMMLEDGGRP-ASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH---HHHHHHHHSSCHHHHHHHHHHHHHSSSSCC-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh---chHHHHHHcCCHHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHH
Confidence 999999887665 2 56999999988765422 2345556666665544443333 1225442 223444444444
Q ss_pred H
Q 019145 328 L 328 (345)
Q Consensus 328 ~ 328 (345)
+
T Consensus 321 ~ 321 (387)
T 2v1u_A 321 L 321 (387)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=174.08 Aligned_cols=229 Identities=18% Similarity=0.223 Sum_probs=166.4
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
....+|..+|.| ++++|++..+..+..++.. .... +++|+||+|+|||++++.+++.+.... +..++.+
T Consensus 5 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i 79 (389)
T 1fnn_A 5 VDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYI 79 (389)
T ss_dssp SCGGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEE
T ss_pred cCHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEE
Confidence 345578888888 6789999998888887765 3333 799999999999999999999984322 4567888
Q ss_pred ecCCccchHH-HHHHHHHHHHhhhcCCCCCCC---------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----Cc
Q 019145 120 NASDDRGINV-VRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYS----KV 185 (345)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----~~ 185 (345)
++....+... +......+.......+..... .....+.+|+|||++.++...+..|..++++.+ ..
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred eCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 8765443322 222222110000000000000 001245799999999999999999999997654 37
Q ss_pred eEEEEecCcc---cccchhhhccce--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---------CCC
Q 019145 186 TRFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---------QGD 249 (345)
Q Consensus 186 ~~ii~~~n~~---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~s---------~g~ 249 (345)
+.+|++++.. ..+.+.+.+|+. .+.|+|++.+++..++..++... ...+++++++.+++.+ +||
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 239 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 239 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCc
Confidence 7888888776 567788888887 79999999999999999998762 2468999999999999 899
Q ss_pred HHHHHHHHHHHHHHh----CCCCCHHHHHHhhCC
Q 019145 250 LRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
+|.+++.++.++..+ ...|+.+++..+...
T Consensus 240 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 999999999887654 256999998876543
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-21 Score=170.34 Aligned_cols=200 Identities=21% Similarity=0.267 Sum_probs=144.4
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+|+.|.+++++.|++.+.- ..+..+|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~ 217 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAE 217 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHH
Confidence 45899999999999988877632 233459999999999999999999999 78899888765
Q ss_pred cc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhc-
Q 019145 124 DR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY- 182 (345)
Q Consensus 124 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~- 182 (345)
.. +...++..+...... .+.||||||+|.+.. ...+.|+..++..
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~--------------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREH--------------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHT--------------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred hhccccchHHHHHHHHHHHHHHh--------------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 32 233445555444333 235999999998831 2355677777643
Q ss_pred -CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 019145 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 -~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~ 256 (345)
...+.+|.+||.++.+++++++ |++ .++|+.|+.++..++++..++...+ +++ .++.|++.+.| +...+.+.
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvdl~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGINLRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCCHHHHHHHCCSCCHHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCCHHHHHHHCCCCCHHHHHHH
Confidence 3467788899999999999998 777 8999999999999999888765443 333 37888888765 33333344
Q ss_pred HHHHHHHh----CCCCCHHHHHHhhC
Q 019145 257 LQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
+..++..+ ...|+.+|+..++.
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 44444333 23588888776643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-21 Score=170.22 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=140.4
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.+..++.+.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++++ +.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~~ 113 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 113 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 456678889999999999999999887731 123459999999999999999999998 66777
Q ss_pred eeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHh
Q 019145 118 ELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le 180 (345)
.+++.+.. ....++..+..... ....+|||||+|.+.. ...+.|+..++
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARE--------------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHH--------------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 77764311 11222222222211 1346999999999863 34677777777
Q ss_pred hc---CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 019145 181 TY---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (345)
Q Consensus 181 ~~---~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~ 255 (345)
.. ...+.+|.++|.+..+++++.+||. .+.+++|+.++...+++.++...+..+++..+..|++.+.| +.+.+.+
T Consensus 180 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 180 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp HCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 43 3567788899999999999999996 78999999999999999999887777899999999999987 4555555
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.+..++
T Consensus 260 l~~~A~ 265 (355)
T 2qp9_X 260 VVKDAL 265 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-21 Score=169.43 Aligned_cols=192 Identities=19% Similarity=0.204 Sum_probs=145.8
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHH----------cC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLE----------TA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~----------~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|...+.+.+|++++|++.+++.+..++. .+ ...++||+||||||||++|+++++++ +.+++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~ 80 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 80 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCEE
Confidence 46678888999999999999999988872 11 23459999999999999999999998 67788
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHh
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le 180 (345)
.+++++..+ ...+...+..... ....+|+|||+|.+.. ..++.++..++
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMARE--------------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHHH--------------TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHHh--------------cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 887743211 1122222222211 1346999999998843 34677777776
Q ss_pred hc---CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 019145 181 TY---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (345)
Q Consensus 181 ~~---~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~ 255 (345)
.. ...+.+|.+||.+..+++++.+||. .+.|++|+.++...+++..+...+..++++.+..|++.+.| +.+.+.+
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 43 4567788889999999999999996 78999999999999999999888888899999999999977 4555544
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.+..++
T Consensus 227 l~~~a~ 232 (322)
T 3eie_A 227 VVKDAL 232 (322)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=161.55 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=151.2
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|.+++.+.+|++++|.+.+++.+...+.. ....+++|+||||||||++++++++.+ +.+++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~ 74 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFF 74 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCCEE
Confidence 377889999999999999998877665432 124469999999999999999999998 45677
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHH
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRR 177 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~ 177 (345)
.+++.+... ...+...+..... ....++++||+|.+.. ...+.++.
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 75 TISGSDFVEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (257)
T ss_dssp EECSCSSTTSCCCCCHHHHHHHHHHHHT--------------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred EEeHHHHHHHhhhhhHHHHHHHHHHHHH--------------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH
Confidence 777654321 2223333333211 1236999999976532 34556666
Q ss_pred HHhhc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC-CH
Q 019145 178 TMETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG-DL 250 (345)
Q Consensus 178 ~le~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g-~~ 250 (345)
.++.. ...+.+|+++|.+..+++++.+ |+. .+.|++|+.++..++++.+++.. .+++++ +..++..+.| +.
T Consensus 141 ~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 141 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCH
T ss_pred HhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHcCCCCH
Confidence 66643 3457788889999989999987 765 78999999999999998887654 344333 6788899999 99
Q ss_pred HHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 251 RRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 251 r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
|.+.+.+..++..+ ...|+.+++.+++.
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 99999888877654 25699999887654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=168.59 Aligned_cols=191 Identities=18% Similarity=0.188 Sum_probs=144.5
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
+.+++.|.+|++++|++.+++.+.+++.. ....+++|+||||||||++|+++++.+ +..++.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~ 147 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFS 147 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEE
Confidence 45677899999999999999999888742 334569999999999999999999998 667888
Q ss_pred eecCCccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh
Q 019145 119 LNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET 181 (345)
Q Consensus 119 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~ 181 (345)
+++.+.... ..+...+..... ....+|||||+|.+. ...++.++..++.
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARC--------------QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHH--------------TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred EehHHhhccccchHHHHHHHHHHHHHh--------------cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 887643221 112222222111 134699999998773 2345667777764
Q ss_pred c----CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHH
Q 019145 182 Y----SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAIT 255 (345)
Q Consensus 182 ~----~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~ 255 (345)
. ...+.+|.+||.+..+.+++.+||. .+.++.|+.++...++...+...+..++++.+..+++.+.|. .+.+..
T Consensus 214 ~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 214 ATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp ----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 2 3467788889999999999999997 789999999999999999999888889999999999999884 444444
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.+..++
T Consensus 294 l~~~a~ 299 (357)
T 3d8b_A 294 LCREAS 299 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=165.66 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=143.6
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
++--..+|+++.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+|+.+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v 247 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRI 247 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEE
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEE
Confidence 344456999999999999888877632 223459999999999999999999999 7888888
Q ss_pred ecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHH
Q 019145 120 NASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTM 179 (345)
Q Consensus 120 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~l 179 (345)
++++..+ ...++..+...... .+.||+|||+|.+.. .....|+..+
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~--------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGEN--------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHT--------------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhc--------------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 8765322 23344444443332 235999999998731 2345566666
Q ss_pred hhc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHH
Q 019145 180 ETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRR 252 (345)
Q Consensus 180 e~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~ 252 (345)
+.. ...+.+|++||.++.+++++++ |++ .++|+.|+.++..++++..++... ++++ .++.|++.+.| +..+
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGAD 391 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGAD 391 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHH
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHH
Confidence 643 3467888999999999999998 777 799999999999999988876543 3333 37888888755 3333
Q ss_pred HHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 253 AITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 253 ~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
+.+.+..++..+ ...|+.+|+.+++
T Consensus 392 I~~l~~eA~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 333444444332 2458888877664
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=167.70 Aligned_cols=231 Identities=21% Similarity=0.193 Sum_probs=160.8
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCC-CCce
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELY-KSRV 116 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~-~~~~ 116 (345)
....+|..+|.| ++++|+++.+..+..++.. +..++++|+||||||||++++.+++.+... ... +..+
T Consensus 8 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 84 (384)
T 2qby_B 8 NPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ 84 (384)
T ss_dssp CTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE
T ss_pred ccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE
Confidence 455678889988 7789999988887766643 445569999999999999999999987321 112 4567
Q ss_pred eeeecCCcc-chH-HHHHHHHHHHHhhhcC-CCCCCC-------CCCCCeEEEEEcCCCCCCHHH-HHH-HHHHHhhcCC
Q 019145 117 LELNASDDR-GIN-VVRTKIKTFAAVAVGS-GQRRGG-------YPCPPYKIIILDEADSMTEDA-QNA-LRRTMETYSK 184 (345)
Q Consensus 117 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~iliiDE~~~l~~~~-~~~-l~~~le~~~~ 184 (345)
+.+++.... +.. .+...+..+....... +..... .......+|+|||+|.+.... ++. +..+++.. .
T Consensus 85 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~ 163 (384)
T 2qby_B 85 AYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-A 163 (384)
T ss_dssp EEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-S
T ss_pred EEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-c
Confidence 778765432 221 1222222211000000 000000 000112399999999986542 455 55555544 6
Q ss_pred ceEEEEecCcc---cccchhhhccc-eeEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC---CCHHHHHH
Q 019145 185 VTRFFFICNYI---SRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRRAIT 255 (345)
Q Consensus 185 ~~~ii~~~n~~---~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~s~---g~~r~~~~ 255 (345)
.+.+|+++|.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.+++
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~ 243 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVN 243 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHH
Confidence 78888888876 56788898885 59999999999999999999875 346789999999999988 99999999
Q ss_pred HHHHHHHHhC--CCCCHHHHHHhhCCC
Q 019145 256 YLQGAARLFG--SSITSKDLISVSGVI 280 (345)
Q Consensus 256 ~l~~~~~~~~--~~it~~~v~~~~~~~ 280 (345)
.++.++..+. ..|+.++|.+++...
T Consensus 244 ~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 244 LLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9999887763 469999998886653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=165.31 Aligned_cols=184 Identities=22% Similarity=0.229 Sum_probs=143.4
Q ss_pred cccccHHHHHHHHHHHH---------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceeeeecCCcc
Q 019145 62 DVAHQEEVVRVLTNTLE---------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDR 125 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~ 125 (345)
+++|++.+++.+.+++. .....+++|+||||||||++|+++++.+..... ....++.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 68999999988887664 233446999999999999999999999843222 23467777664421
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEEEE
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
+ ...+...+... ...+|+|||++.+ +...++.|++.+++.+..+.+|+
T Consensus 112 ~~~~g~~~~~~~~~~~~~-----------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-----------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-----------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred hhcccccHHHHHHHHHhc-----------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 11122222211 1249999999977 77889999999999888888999
Q ss_pred ecCccc-----ccchhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHH
Q 019145 191 ICNYIS-----RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITY 256 (345)
Q Consensus 191 ~~n~~~-----~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------s~g~~r~~~~~ 256 (345)
++|... .+.+++.+|| ..+.|++|+.+++..++..++...++.++++++..++++ ..||+|.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 987543 3468999999 599999999999999999999999999999999999986 45999999999
Q ss_pred HHHHHH
Q 019145 257 LQGAAR 262 (345)
Q Consensus 257 l~~~~~ 262 (345)
++.+..
T Consensus 255 l~~a~~ 260 (309)
T 3syl_A 255 LDRARL 260 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=168.70 Aligned_cols=203 Identities=22% Similarity=0.241 Sum_probs=143.9
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
-.+.+|+++.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+++.+++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~ 248 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAA 248 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEeh
Confidence 3455899999999999888876521 234459999999999999999999999 788888887
Q ss_pred CCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------H---HHHHHHHHHHhh
Q 019145 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMET 181 (345)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~---~~~~~l~~~le~ 181 (345)
++.. +...++..+....... +.||+|||+|.+. . .....|+..++.
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~a--------------P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKA--------------PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHC--------------SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcC--------------CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 6532 2233444444443332 3599999999762 1 134567777765
Q ss_pred cC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHH
Q 019145 182 YS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAI 254 (345)
Q Consensus 182 ~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~ 254 (345)
.. ..+.+|.+||.++.+++++++ |++ .++|+.|+.++..++++..++.... +++ .++.|++.+.| +...+.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi~ 392 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQLK 392 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHHH
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHH
Confidence 43 456788899999999999988 777 7999999999999999988876543 232 26788888755 333333
Q ss_pred HHHHHHHHHh----CCCCCHHHHHHhhCC
Q 019145 255 TYLQGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 255 ~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
+.+..++..+ ...|+.+|+.+++..
T Consensus 393 ~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 393 AVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4444433332 345898888777644
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-21 Score=174.84 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=155.2
Q ss_pred hCCC-CCcccc-c--cHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 55 YRPK-QVKDVA-H--QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 55 ~~p~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
+.|. +|++++ | +......+..+..... .++++|+||||+||||+++++++.+... ..+..++.+++... ...
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~--~~~ 174 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKF--LND 174 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHH--HHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHH--HHH
Confidence 4444 888887 5 3444556666666544 5679999999999999999999987322 12345666665431 111
Q ss_pred HHHHHH-----HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCc-ccc---
Q 019145 130 VRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNY-ISR--- 197 (345)
Q Consensus 130 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~-~~~--- 197 (345)
+...+. .+.... ....++|+|||++.+.. ..++.|+..++... ....+|++++. +..
T Consensus 175 ~~~~~~~~~~~~~~~~~-----------~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREKY-----------RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHTTCHHHHHHHH-----------TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHcccHHHHHHHh-----------cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 111111 111000 01346999999999975 67788888887533 34556666654 333
Q ss_pred cchhhhccc---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHH
Q 019145 198 IIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSK 271 (345)
Q Consensus 198 l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~ 271 (345)
+.+++.+|+ .++.+.+|+.+++..++...+...++.++++++..|++.++||+|.+.+.++.+..++ +..||.+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~ 323 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLK 323 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 779999999 4899999999999999999999999999999999999999999999999999887665 5679999
Q ss_pred HHHHhhCCCC
Q 019145 272 DLISVSGVIP 281 (345)
Q Consensus 272 ~v~~~~~~~~ 281 (345)
++.+++....
T Consensus 324 ~~~~~l~~~~ 333 (440)
T 2z4s_A 324 EAILLLKDFI 333 (440)
T ss_dssp HHHHHTSTTT
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=163.27 Aligned_cols=204 Identities=18% Similarity=0.267 Sum_probs=147.4
Q ss_pred cccccHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc-
Q 019145 62 DVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG- 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~- 126 (345)
+++|++.++..+...+.. ....+++|+||||||||++|+++++.+ +..++.+++.....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKFTEV 89 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGGSSC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEcchhcccC
Confidence 588999999988887754 245679999999999999999999998 55677777654321
Q ss_pred -------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH------------HHHHHHHHhhc-----
Q 019145 127 -------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA------------QNALRRTMETY----- 182 (345)
Q Consensus 127 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~------------~~~l~~~le~~----- 182 (345)
...+...+...... .. ....+.+|+|||++.++.+. ++.|+++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 160 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGA-ID--------AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK 160 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTC-HH--------HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEET
T ss_pred CccCccHHHHHHHHHHHhhHH-Hh--------hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecc
Confidence 11122222110000 00 00124599999999997543 78899999863
Q ss_pred -----CCceEEEEec----Ccccccchhhhccce-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHH
Q 019145 183 -----SKVTRFFFIC----NYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEAL 239 (345)
Q Consensus 183 -----~~~~~ii~~~----n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~ 239 (345)
...+.+|+++ +.+..+.+++.+||. .+.|++|+.+++..+++. .+...+. .++++++
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (310)
T 1ofh_A 161 HGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 240 (310)
T ss_dssp TEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHH
T ss_pred cccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHH
Confidence 2356677774 456778999999997 699999999999999983 2333453 5899999
Q ss_pred HHHHHhc--------CCCHHHHHHHHHHHHHH-----h---CC--CCCHHHHHHhhCCC
Q 019145 240 STLSSIS--------QGDLRRAITYLQGAARL-----F---GS--SITSKDLISVSGVI 280 (345)
Q Consensus 240 ~~l~~~s--------~g~~r~~~~~l~~~~~~-----~---~~--~it~~~v~~~~~~~ 280 (345)
+.|++.+ .||+|.+.+.++.+... . +. .||.++|.++++..
T Consensus 241 ~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 241 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 9999988 79999999999876521 1 11 39999999988753
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-20 Score=165.60 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=139.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|+|+.|.+++++.|++.+.. ..+..+|||||||||||++|+++|+++ +.+|+.+++++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSEL 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHh
Confidence 5899999999999988876532 234559999999999999999999999 778888887653
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhc--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY-- 182 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~-- 182 (345)
.+ ...++..+...... .+.||+|||+|.+.. .....++..++..
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~--------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTK--------------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHT--------------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred hcccCCHHHHHHHHHHHHHHhc--------------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 22 23344444443332 235999999998731 2344566666543
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~l 257 (345)
...+.+|++||.++.+++++++ |++ .++|+.|+.++..++++..++... ++++ .++.|++.+.| +...+.+.+
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 3467788899999999999998 887 899999999999999988876543 3332 36778888765 233333333
Q ss_pred HHHHHHh----CCCCCHHHHHHhh
Q 019145 258 QGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~ 277 (345)
..++..+ ...|+.+|+..++
T Consensus 424 ~eAa~~Air~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 424 TEAGMFAIRARRKVATEKDFLKAV 447 (467)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHH
Confidence 3333322 3457888776654
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=164.32 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=141.5
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+++.+++++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~ 250 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASG 250 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhh
Confidence 44899999999999888887642 223459999999999999999999999 78888888765
Q ss_pred ccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------------HHHHHHHHHHHhhcC
Q 019145 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS 183 (345)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------------~~~~~~l~~~le~~~ 183 (345)
..+ ...++..+...... .+.||||||+|.+. ....+.|+..++...
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~--------------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEH--------------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHS--------------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred hccccchHHHHHHHHHHHHHHhc--------------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 322 22333343333222 34699999999873 123556777776543
Q ss_pred --CceEEEEecCcccccchhhhcc--ce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Q 019145 184 --KVTRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 184 --~~~~ii~~~n~~~~l~~~l~~r--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l 257 (345)
..+.+|++||.++.++++++++ ++ .++|+.|+.++...+++..++..... ++..+..+++.+.| +...+.+.+
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHH
Confidence 4578899999999999999885 55 79999999999999998888654432 12237888888765 333333444
Q ss_pred HHHHHHh----CCCCCHHHHHHhh
Q 019145 258 QGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~ 277 (345)
..++..+ ...|+.+|+.+++
T Consensus 396 ~eA~~~air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 396 TEAGFFAIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4444332 2458888876654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=156.20 Aligned_cols=201 Identities=18% Similarity=0.125 Sum_probs=136.2
Q ss_pred CCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
+.+|++++|.+.+++.+.+++.. ....+++|+||||||||++|+++++++ +.+++.+++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 35789999999998888776532 233458999999999999999999998 567788877653
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HH---HHHHHHHHhh--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DA---QNALRRTMET-- 181 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~---~~~l~~~le~-- 181 (345)
.. ...+...+..... ....+|+|||+|.+.. .. ...++..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARA--------------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHH--------------TCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred HhhccChhHHHHHHHHHHHHh--------------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 22 1122222222211 1246999999999832 22 2344444443
Q ss_pred cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC-HHHHHHH
Q 019145 182 YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD-LRRAITY 256 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~-~r~~~~~ 256 (345)
....+.+|.++|.+..+++++.+ |+. .+.|++|+.++..++++.++...+...+.+. ...+++.+.|. .+.+.+.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 23467788889999999999998 885 8899999999999999999998888877664 57888888775 4455556
Q ss_pred HHHHHHHh----CCCCCHHHHHHhh
Q 019145 257 LQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~ 277 (345)
+..++..+ ...|+.+++.+++
T Consensus 222 ~~~a~~~a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 222 CNEAALHAAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp HHHHHTC--------CCBCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 66555443 2336666665543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=159.40 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=140.5
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.+.+.+|+++.|.+.+++.|.+.+.. ....++||+||||||||++|+++++++. +..++.+++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~ 79 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISS 79 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEEC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEh
Confidence 34566899999999999999887732 1224599999999999999999999872 345666776
Q ss_pred CCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc--
Q 019145 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-- 182 (345)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~-- 182 (345)
++.. ....++..+..... ....+|+|||+|.+. ....+.++..++..
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHH--------------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHh--------------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 5422 22233333333221 134699999999882 23456777777653
Q ss_pred -CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q 019145 183 -SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQG 259 (345)
Q Consensus 183 -~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~l~~ 259 (345)
...+.+|.+||.+..+++++++|+. .+.+++|+.++...+++..+...+..+++..+..|++.+.|. .+.+.+.+..
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567788899999999999999996 789999999999999999998777778999999999999875 4444444444
Q ss_pred HH
Q 019145 260 AA 261 (345)
Q Consensus 260 ~~ 261 (345)
++
T Consensus 226 A~ 227 (322)
T 1xwi_A 226 AL 227 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=158.41 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=143.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
...+.+|++++|.+..++.+...+.. ....+++|+||||||||++++++++.+ +..++.++
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~ 83 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVV 83 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEE
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEe
Confidence 34456899999999999988887743 345569999999999999999999998 66777777
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC-----------CHHHHHHHHHHHhh--
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMET-- 181 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l-----------~~~~~~~l~~~le~-- 181 (345)
+..... ...+...+..... ....+|+|||++.+ ....+..+..+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKE--------------KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHH--------------TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHhccchHHHHHHHHHHHHHH--------------cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 654211 1112222222211 13469999999987 33455555555543
Q ss_pred ---cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHH
Q 019145 182 ---YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAI 254 (345)
Q Consensus 182 ---~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~ 254 (345)
....+.+|+++|.+..+.+++.+ |+. .+.|++|+.++..++++..+...+.. ++..+..++..+.| ..+.+.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHH
Confidence 23467888999999999999998 886 89999999999999999888765543 23346777877766 455555
Q ss_pred HHHHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 255 TYLQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 255 ~~l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
+.+..+...+ + ..|+.+++.+++.
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 5554444333 3 4599999887754
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=165.21 Aligned_cols=216 Identities=17% Similarity=0.151 Sum_probs=156.4
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.+|.++++|..+.+++|+++.+..+...+..+. +++|+||||||||++++++++.+ +..+..+++.......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~------~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM------DLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT------TCCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh------CCCeEEEecCCCCChh
Confidence 369999999999999999999999988887754 79999999999999999999998 4566666664322222
Q ss_pred HHHHHHHHHHHhhhcCCC--CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcc
Q 019145 129 VVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~ 195 (345)
.+.. ... .....+. ...+.. ...+++|||++.++.+.++.|++.+++. +..+.+|.++|+.
T Consensus 87 ~l~g---~~~-~~~~~~~~~~~~g~l--~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 87 DLIG---TMI-YNQHKGNFEVKKGPV--FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp HHHE---EEE-EETTTTEEEEEECTT--CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred hcCC---cee-ecCCCCceEeccCcc--cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1110 000 0000000 000000 1359999999999999999999999863 3445666666643
Q ss_pred c-----ccchhhhccce-eEEecCCCHHHHHHHHHHHHHH----------------------hCCCCCHHHHHHHHHhc-
Q 019145 196 S-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE----------------------EGLNLDAEALSTLSSIS- 246 (345)
Q Consensus 196 ~-----~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~i~~~~~~~l~~~s- 246 (345)
. .+.+++.+||. .+.+.+|+.++..++++..+.. .++.+++++++.+++.+
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~ 240 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVF 240 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 3 37899999998 5999999999999999887654 26778999999987654
Q ss_pred -------------------CCCHHHHHHHHHHHHHHh---CC-CCCHHHHHHhhC
Q 019145 247 -------------------QGDLRRAITYLQGAARLF---GS-SITSKDLISVSG 278 (345)
Q Consensus 247 -------------------~g~~r~~~~~l~~~~~~~---~~-~it~~~v~~~~~ 278 (345)
+.++|.+++.+..+...+ +. .|+.++|.+++.
T Consensus 241 ~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 241 ATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 226999988887655443 43 488888877643
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=160.89 Aligned_cols=200 Identities=8% Similarity=0.071 Sum_probs=136.8
Q ss_pred ccccHHHHH----HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCccchHHHH-HH
Q 019145 63 VAHQEEVVR----VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDDRGINVVR-TK 133 (345)
Q Consensus 63 ~~g~~~~~~----~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 133 (345)
+.++++.+. .|...+..+.+++++|+||||||||++++.+++++... ....+.++.+||....+...+. ..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 566666554 44556667788889999999999999999999998422 1224678889987654433222 22
Q ss_pred HHHHHHhhhcCCCC---------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh---cCCceEEEEecCccc----c
Q 019145 134 IKTFAAVAVGSGQR---------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYIS----R 197 (345)
Q Consensus 134 ~~~~~~~~~~~~~~---------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~---~~~~~~ii~~~n~~~----~ 197 (345)
...+.......+.. ..........||++||+|.+. .++.|+.+++. ....+.+|+++|..+ .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 22221100000000 000012345799999999997 55666666653 234567788887653 3
Q ss_pred cchhhhccc--eeEEecCCCHHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHH
Q 019145 198 IIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEGL-----------------------------------NLDAEALS 240 (345)
Q Consensus 198 l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~i~~~~~~ 240 (345)
+.+++.+|+ ..+.|+|++.+|+.++++.++....- .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 566778887 47999999999999999999876321 37999999
Q ss_pred HHHH---hcCCCHHHHHHHHHHHHHHh
Q 019145 241 TLSS---ISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 241 ~l~~---~s~g~~r~~~~~l~~~~~~~ 264 (345)
.+++ .++||+|.+++.|+.++..+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9998 57999999999999988765
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=166.79 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=142.6
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
+...+.+.+|++++|++.++..|..++.. ....++||+||||||||++|+++++++. +.+++.
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~ 198 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFS 198 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEE
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEE
Confidence 34567788999999999999999887731 2335699999999999999999999872 346677
Q ss_pred eecCCccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh
Q 019145 119 LNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET 181 (345)
Q Consensus 119 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~ 181 (345)
+++++..+. ..++..+..... ..+.+|||||+|.+. ....+.|+..++.
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHH--------------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 776543221 122233322211 134699999999883 3456777777765
Q ss_pred c---CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 019145 182 Y---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 182 ~---~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~ 256 (345)
. ...+.+|.+||.+..+++++++||. .+.+++|+.++...+++..+...+..+++..+..|++.+.| +.+.+.+.
T Consensus 265 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 265 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 4568888899999999999999996 88999999999999999998877777899999999999988 44455555
Q ss_pred HHHHH
Q 019145 257 LQGAA 261 (345)
Q Consensus 257 l~~~~ 261 (345)
+..++
T Consensus 345 ~~~a~ 349 (444)
T 2zan_A 345 VRDAL 349 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=160.29 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=143.2
Q ss_pred CCCcccc-c--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+|++++ | +......+..++.... .++++|+||||||||++++++++.+... +..++.+++.+. ...+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~--~~~~~~ 82 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDF--AQAMVE 82 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH--HHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHH--HHHHHH
Confidence 3788887 4 4555667777776653 4569999999999999999999987432 456777766432 111111
Q ss_pred HHH-----HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCc-cc---ccch
Q 019145 133 KIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNY-IS---RIIE 200 (345)
Q Consensus 133 ~~~-----~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~-~~---~l~~ 200 (345)
.+. .+.... ....+|+|||++.+.. ..++.++.+++... ....+|++++. +. .+.+
T Consensus 83 ~~~~~~~~~~~~~~------------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 83 HLKKGTINEFRNMY------------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHTCHHHHHHHH------------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHcCcHHHHHHHh------------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 111 111100 1245999999999975 66777777776432 23456666543 33 5789
Q ss_pred hhhccc---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------h-CCCC-
Q 019145 201 PLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-------F-GSSI- 268 (345)
Q Consensus 201 ~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~-------~-~~~i- 268 (345)
++.+|+ ..+.|+| +.++...++...+...++.+++++++.|++.+ ||+|.+.+.++.+..+ . ...|
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~ 228 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERD 228 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCC
Confidence 999999 5899999 99999999999999999999999999999999 9999999999988766 1 1235
Q ss_pred CHHHHHHhh
Q 019145 269 TSKDLISVS 277 (345)
Q Consensus 269 t~~~v~~~~ 277 (345)
|.++|.+++
T Consensus 229 t~~~i~~~~ 237 (324)
T 1l8q_A 229 KLMQIVEFV 237 (324)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=163.37 Aligned_cols=222 Identities=18% Similarity=0.245 Sum_probs=155.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...++..+|.| ++++|++..+..+..++.. +...+++|+||+|||||++++.+++.+......+..++.+++.
T Consensus 9 ~~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 9 NREYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CGGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred chhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 44456666766 6789999999999888874 4455699999999999999999999873211103456666653
Q ss_pred CccchHH-------------------HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC----HHHHHHHHHHH
Q 019145 123 DDRGINV-------------------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----EDAQNALRRTM 179 (345)
Q Consensus 123 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~----~~~~~~l~~~l 179 (345)
....... .......+..... ..+.+.+|+|||++.+. .+....++..+
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~ 156 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---------DYGSQVVIVLDEIDAFVKKYNDDILYKLSRIN 156 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---------TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---------ccCCeEEEEEcChhhhhccCcCHHHHHHhhch
Confidence 2111111 0111111111100 01235799999999875 34566677777
Q ss_pred hhc-CCceEEEEecCcc---cccchhhhccc--eeEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcC---C
Q 019145 180 ETY-SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSISQ---G 248 (345)
Q Consensus 180 e~~-~~~~~ii~~~n~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~s~---g 248 (345)
+.. ..++.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++...+.... ..+++++++.+++.++ |
T Consensus 157 ~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 157 SEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp HSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 542 3467788888765 45678888888 5899999999999999999886533 5789999999999988 9
Q ss_pred CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhCCC
Q 019145 249 DLRRAITYLQGAARLF---G-SSITSKDLISVSGVI 280 (345)
Q Consensus 249 ~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~~ 280 (345)
|+|.+++.++.++..+ + ..|+.+++.+++...
T Consensus 237 ~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9999999998877654 2 469999998876543
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-19 Score=160.08 Aligned_cols=198 Identities=23% Similarity=0.239 Sum_probs=141.0
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|+|+.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+++.+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEF 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchh
Confidence 4899999999999888877632 233459999999999999999999999 788888887653
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------------HHHHHHHHHHHhhc--
Q 019145 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY-- 182 (345)
Q Consensus 125 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------------~~~~~~l~~~le~~-- 182 (345)
. +...++..+...... .+.+++|||+|.+. ....+.|+..++..
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~--------------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN--------------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT--------------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred hccccchhHHHHHHHHHHHHHc--------------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 2 223444544443332 23599999998651 13456777788753
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEec-CCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFK-PLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~ 256 (345)
..++.+|++||.++.+++++++ |++ .++|+ +|+.++...+++..++... ++++ .++.+++.+.| +...+.+.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHH
Confidence 3467788999999999999998 776 78895 6889999999988886544 3333 37888888755 33333344
Q ss_pred HHHHHHHh----CCCCCHHHHHHhh
Q 019145 257 LQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~ 277 (345)
+..++..+ ...|+.+|+.+++
T Consensus 387 ~~eA~~~a~r~~~~~i~~~d~~~A~ 411 (428)
T 4b4t_K 387 MQEAGLRAVRKNRYVILQSDLEEAY 411 (428)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 44444332 2458888887654
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=162.39 Aligned_cols=224 Identities=17% Similarity=0.107 Sum_probs=143.7
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-----CCCC-------------
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-----ELYK------------- 113 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~-----~~~~------------- 113 (345)
....+|.+|++++|++..+..+..........+++|+||||||||++|+++++.+... ...+
T Consensus 15 ~~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (350)
T 1g8p_A 15 AKTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATV 94 (350)
T ss_dssp ---CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCC
T ss_pred CCCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhh
Confidence 3455778999999999888776666555455579999999999999999999987320 0000
Q ss_pred ---------CceeeeecCCccchHHHHHH--HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 114 ---------SRVLELNASDDRGINVVRTK--IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 114 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
..++.+... .....+... +........ .....+....+..++|+|||++.++.+.++.|++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~-~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 95 LSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGE-KAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp SCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCG-GGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred hccccccCCCcccccCCC--cchhhheeechhhhhhcCCc-eeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 011111111 011111100 000000000 000000001123579999999999999999999999863
Q ss_pred -------------CCceEEEEecCccc-ccchhhhcccee-EEecCCC-HHHHHHHHHHH--------------------
Q 019145 183 -------------SKVTRFFFICNYIS-RIIEPLASRCAK-FRFKPLS-EEVMSSRVLHI-------------------- 226 (345)
Q Consensus 183 -------------~~~~~ii~~~n~~~-~l~~~l~~r~~~-i~~~~~~-~~~~~~~l~~~-------------------- 226 (345)
+..+.+|.++|... .+.+++.+||.. +.+++|+ .++...++...
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMD 251 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHH
Confidence 13566777788644 789999999985 9999995 44444555442
Q ss_pred ---------HHHhCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 227 ---------CNEEGLNLDAEALSTLSSISQG----DLRRAITYLQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 227 ---------~~~~~~~i~~~~~~~l~~~s~g----~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
....++.+++++++.|++.+.+ ++|.+.+.++.+...+ + ..|+.++|.+++.
T Consensus 252 ~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 252 IRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 2234568999999999998855 8999999998766554 4 3599999877653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=168.02 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=144.4
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeec
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~ 121 (345)
.-..+|.++++|..++.++|++..+..+...+.....++++|+||||||||++++++++.+.+.. ..+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 34568999999999999999999999999999988888999999999999999999999985422 23556777776
Q ss_pred CCc-cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc--
Q 019145 122 SDD-RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (345)
Q Consensus 122 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~-- 196 (345)
... .+ ...+...+..... ....+|||| ...+.++.|+..++. ..+.+|.++|...
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~--------------~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (468)
T ss_dssp --------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred CccccchHHHHHHHHHHHHHh--------------cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHH
Confidence 511 00 1122333333221 123599999 445677778888874 4677888887665
Q ss_pred ---ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHH
Q 019145 197 ---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYLQGAARL 263 (345)
Q Consensus 197 ---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~~l~~~~~~ 263 (345)
.+++++.+||..+.|++|+.++...+++.++.. +++.++++++..++..+.+ -++.++..++.++..
T Consensus 305 ~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999987765 7888999999999987643 356788888776643
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=155.64 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=138.0
Q ss_pred CCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
.+|++++|+...+..+.+.+.. ....+++|+||||||||++|+++++.... .+.+++.+++.... ...+...+-
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~---~~~~~~~v~~~~~~-~~~~~~~l~ 78 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALN-ENLLDSELF 78 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---TTSCEEEEEGGGSC-HHHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc---cCCCeEEEecCCCC-hhHHHHHhc
Confidence 4688899998888777766643 33456999999999999999999988622 24578888887642 222211110
Q ss_pred HHHH-hhhcCCC-CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCccc------
Q 019145 136 TFAA-VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYIS------ 196 (345)
Q Consensus 136 ~~~~-~~~~~~~-~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~~------ 196 (345)
.... ...+... ..+....+..++|+|||++.++.+.++.|++++++. +..+.+|+++|...
T Consensus 79 g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~ 158 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNE 158 (265)
T ss_dssp CCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHH
T ss_pred CCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHc
Confidence 0000 0000000 000000123469999999999999999999999864 24578899988742
Q ss_pred -ccchhhhccce--eEEecCCCH--HHHHHHHHH----HHHHhCC----CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 019145 197 -RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEGL----NLDAEALSTLSSIS-QGDLRRAITYLQGAAR 262 (345)
Q Consensus 197 -~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~----~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~ 262 (345)
.+.+.+.+|+. .+.++|+.. +++..++.. .+...+. .+++++++.+..+. .||+|.+.+.++.++.
T Consensus 159 ~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 159 GTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp TSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred CCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 35688999986 577777765 566655444 4444554 68999999998775 8999999999999886
Q ss_pred Hh-CCCCCHHHH
Q 019145 263 LF-GSSITSKDL 273 (345)
Q Consensus 263 ~~-~~~it~~~v 273 (345)
.+ +..|+.+++
T Consensus 239 ~~~~~~i~~~~l 250 (265)
T 2bjv_A 239 RHGTSDYPLDDI 250 (265)
T ss_dssp HHCCSSSCBCCC
T ss_pred hCCCCcCcHHHc
Confidence 65 455776665
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=160.85 Aligned_cols=202 Identities=23% Similarity=0.217 Sum_probs=146.3
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..+.+|++++|.+..+..+.+.+.. ..+.+++|+||||||||+++++++.++ +.+++.++++
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~ 83 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGS 83 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGG
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHH
Confidence 3445899999999998887776542 123459999999999999999999998 6678888775
Q ss_pred Cccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhc
Q 019145 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY 182 (345)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~ 182 (345)
+... ...++..+..... ..+.+|||||+|.+.. ..++.|+..++..
T Consensus 84 ~~~~~~~g~~~~~~r~lf~~A~~--------------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 84 DFVELFVGVGAARVRDLFAQAKA--------------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp GTTTCCTTHHHHHHHHHHHHHHH--------------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcccHHHHHHHHHHHHh--------------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 4321 1223333333221 1346999999998742 2456677777642
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAIT 255 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~ 255 (345)
...+.+|.+||.++.+++++.+ |+. .+.+++|+.++..++++..++... +.+++ +..++..+.|+. +.+.+
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~ 227 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLEN 227 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHH
Confidence 3467788899999999999886 776 889999999999999988776543 33333 788999999887 67777
Q ss_pred HHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 256 YLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 256 ~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.+..++..+ ...|+.+++.+++.
T Consensus 228 lv~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 228 LVNEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 777766554 24699998877654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=156.47 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=139.4
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
.+++|++.++..+...+.... ..+++|+||||||||++|+++++.+.+. ...++.+++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeecccccccccHH
Confidence 357899999988888876631 1358999999999999999999998442 3356677765432222111
Q ss_pred HHHHHHHHhhhcC-CCCCCC-----CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGS-GQRRGG-----YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~~-----~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+. ..... +..... ....+..+|+|||++.++...++.|++++++.. .++.+|+++|.
T Consensus 94 ~l~g----~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 94 RLIG----APPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHHC----CCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred HhcC----CCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 1110 00000 000000 001234799999999999999999999998754 25568889987
Q ss_pred --------------------------ccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHH
Q 019145 195 --------------------------ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEA 238 (345)
Q Consensus 195 --------------------------~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~ 238 (345)
...+.+++.+|+. ++.|.|++.+++..++...+... .+.+++++
T Consensus 170 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 4fcw_A 170 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAA 249 (311)
T ss_dssp THHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHH
T ss_pred CHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHH
Confidence 4567889999995 88999999999999998876542 34589999
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHHHH
Q 019145 239 LSTLSSIS---QGDLRRAITYLQGAAR 262 (345)
Q Consensus 239 ~~~l~~~s---~g~~r~~~~~l~~~~~ 262 (345)
++.+++++ .||+|.+.+.++.+..
T Consensus 250 ~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 250 KDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 99999976 4999999998887654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=151.24 Aligned_cols=187 Identities=20% Similarity=0.206 Sum_probs=131.0
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
...+.+|++++|.+.+++.+.+++.. ....+++|+||||||||++|+++++.+ +.+++.++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~ 81 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIK 81 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEEC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEE
Confidence 34567899999999999988887753 233459999999999999999999998 56777777
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHHHHHHHHh
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTME 180 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~~l~~~le 180 (345)
+.+... ...+...+..... ..+.+|+|||++.+... .++.|+..++
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQ--------------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHH--------------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHh--------------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 643211 1112222222211 13469999999987543 3577888887
Q ss_pred hc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHH
Q 019145 181 TY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAI 254 (345)
Q Consensus 181 ~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~ 254 (345)
.. ..++.+|++||.+..+++++.+ |+. .+.|++|+.++..++++.+++..+.. .+..+..++..+.| ..+.+.
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~ 226 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 226 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHH
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHH
Confidence 43 3467888999999999999988 786 89999999999999999988766543 12224566666544 233444
Q ss_pred HHHHHHH
Q 019145 255 TYLQGAA 261 (345)
Q Consensus 255 ~~l~~~~ 261 (345)
+.++.++
T Consensus 227 ~l~~~a~ 233 (301)
T 3cf0_A 227 EICQRAC 233 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-18 Score=147.67 Aligned_cols=206 Identities=17% Similarity=0.210 Sum_probs=143.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
+++|+...+..+...+.. ....+++|+||||||||++|+++++... ..+.+++.++|..... ..+...+
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~~~v~v~~~~~~~-~l~~~~l----- 73 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA---RSDRPLVTLNCAALNE-SLLESEL----- 73 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS---CSSSCCCEEECSSCCH-HHHHHHH-----
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc---ccCCCeEEEeCCCCCh-HHHHHHh-----
Confidence 578988888877777655 3445699999999999999999999752 2246788888876322 2111111
Q ss_pred hhhcCCCCCCC-------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc------
Q 019145 140 VAVGSGQRRGG-------YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------ 195 (345)
Q Consensus 140 ~~~~~~~~~~~-------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~------ 195 (345)
+....+...+. ...+..++|||||++.++.+.+..|++++++.. ..+++|++||..
T Consensus 74 fg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~ 153 (304)
T 1ojl_A 74 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS 153 (304)
T ss_dssp TCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH
T ss_pred cCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH
Confidence 00000000000 001234699999999999999999999998753 357889988864
Q ss_pred -cccchhhhccce--eEEecCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 019145 196 -SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAAR 262 (345)
Q Consensus 196 -~~l~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~ 262 (345)
..+.+.+.+|+. .+.++|+. .+++..++..++. ..+ ..+++++++.+..++ .||+|.+.+.++.++.
T Consensus 154 ~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 154 AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 135677888876 46677776 4666666655443 333 468999999999987 9999999999999887
Q ss_pred Hh-CCCCCHHHHHHh
Q 019145 263 LF-GSSITSKDLISV 276 (345)
Q Consensus 263 ~~-~~~it~~~v~~~ 276 (345)
.+ +..|+.+++...
T Consensus 234 ~~~~~~i~~~~l~~~ 248 (304)
T 1ojl_A 234 LLTGEYISERELPLA 248 (304)
T ss_dssp HCCSSSBCGGGSCGG
T ss_pred hCCCCcccHHhhhhh
Confidence 76 456887777543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=169.92 Aligned_cols=215 Identities=21% Similarity=0.252 Sum_probs=139.5
Q ss_pred ccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (345)
++++|.+++...+...+.. ...++++|+||||||||+++++++..+ ...+..+++........+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhHH
Confidence 4578988888777655432 234468999999999999999999998 5567777665422211111100
Q ss_pred HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhcC---------------CceEEEEecCcc
Q 019145 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNYI 195 (345)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~~---------------~~~~ii~~~n~~ 195 (345)
..+....................++++||++.++.+ .++.|++.++... .++.+|+++|..
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp ---------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred HHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 000000000000000000113359999999999876 4578888886432 457889999999
Q ss_pred cccchhhhccceeEEecCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 019145 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAARL 263 (345)
Q Consensus 196 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~~l~~~s--~g~~r~~~~~l~~~~~~ 263 (345)
..+++++++||.++.|++|+.++...++...+ +.. ++.++++++..+++.. .|++|.+.+.++.++..
T Consensus 235 ~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~ 314 (543)
T 3m6a_A 235 ATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRK 314 (543)
T ss_dssp TTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHH
Confidence 99999999999999999999999999988865 223 3467899999988744 37888888877665543
Q ss_pred h------C----CCCCHHHHHHhhCCCC
Q 019145 264 F------G----SSITSKDLISVSGVIP 281 (345)
Q Consensus 264 ~------~----~~it~~~v~~~~~~~~ 281 (345)
+ + ..||.+++.++++...
T Consensus 315 aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 315 AAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 2 1 2488888888877543
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-20 Score=158.27 Aligned_cols=206 Identities=19% Similarity=0.167 Sum_probs=139.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
++.+.+|++++|++..+..+...+.. ....+++|+||||||||++|+++++++ ..+++.+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~v~~ 77 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------HVPFFSMGG 77 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH------TCCCCCCCS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEech
Confidence 45567899999998888877776641 223459999999999999999999998 345555555
Q ss_pred CCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH---------------HHHHHHHHHh
Q 019145 122 SDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---------------AQNALRRTME 180 (345)
Q Consensus 122 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~---------------~~~~l~~~le 180 (345)
..... ...+...+..... ....+|+|||+|.+... .++.|+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKK--------------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHH--------------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred HHHHHhhcchHHHHHHHHHHHHHh--------------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 43211 1111122222111 12359999999998643 2345666665
Q ss_pred hcC---CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHH
Q 019145 181 TYS---KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRA 253 (345)
Q Consensus 181 ~~~---~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~ 253 (345)
... ..+.+|+++|.+..+++++.+ |+. .+.|++|+.++...+++..++...+. ++..+..+++.+.| ..+.+
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl 222 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADL 222 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHH
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHH
Confidence 432 236788888998888889988 664 78999999999999998887643332 22236667777766 45566
Q ss_pred HHHHHHHHHHh----CCCCCHHHHHHhhCCC
Q 019145 254 ITYLQGAARLF----GSSITSKDLISVSGVI 280 (345)
Q Consensus 254 ~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (345)
.+.++.++..+ +..|+.+++.+++...
T Consensus 223 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 223 ANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 67777666554 3469999998877653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=140.78 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=117.3
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeecCC
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~~ 123 (345)
..+|.++++|..|++++|+++.+..+..++..+...+++|+||||||||++++.+++.+.+... .+..++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 4579999999999999999999999999998877778999999999999999999998743211 134555555422
Q ss_pred c----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEe
Q 019145 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 124 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~ 191 (345)
. .........+......... .....+|+|||++.+.. ...+.+..+++. ..+.+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~ 157 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAK---------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 157 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHH---------STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEE
T ss_pred HhccCCccccHHHHHHHHHHHHhh---------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEe
Confidence 1 1111122222222211100 02346999999999853 236667777765 45667888
Q ss_pred cCccc-----ccchhhhccceeEEecCCCHHHHHHHH
Q 019145 192 CNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 192 ~n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++... .+.+++.+||..+.|.+|+.+++.+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 87665 578999999999999999999987764
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-18 Score=167.27 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=142.9
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~ 124 (345)
.+|+++++|..|++++|+++.+..+...+..+..++++|+||||||||++++.+++.+.+.. ..+..++.+++...
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 47999999999999999999999999999888888899999999999999999999874311 12566777776543
Q ss_pred cch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHhhcCCceEEEEec
Q 019145 125 RGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
... ......+......... .....+|||||+|.+. .+..+.|..+++. ..+.+|.++
T Consensus 238 ~~g~~~~g~~~~~l~~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 238 LAGAKYRGEFEERLKAVIQEVVQ---------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp --------CHHHHHHHHHHHHHT---------TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred hccCccchHHHHHHHHHHHHHHh---------cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 211 1111222222111111 0134699999999986 3455678888865 455677777
Q ss_pred Cccc----ccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHHH
Q 019145 193 NYIS----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYLQ 258 (345)
Q Consensus 193 n~~~----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~g------~~r~~~~~l~ 258 (345)
+... .+.+++.+||..+.|++|+.++...+++..+. .+++.++++++..+++.+.| .+..++..++
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lld 386 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLID 386 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHH
Confidence 6553 36899999999999999999999999987665 45788999999999987733 3788888888
Q ss_pred HHHHHh
Q 019145 259 GAARLF 264 (345)
Q Consensus 259 ~~~~~~ 264 (345)
.++...
T Consensus 387 ea~a~~ 392 (854)
T 1qvr_A 387 EAAARL 392 (854)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=163.76 Aligned_cols=220 Identities=16% Similarity=0.148 Sum_probs=155.9
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeec
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~ 121 (345)
.-..+|+++++|..|++++|++..+..+...+......+++|+||||||||++++.+++.+.+... .+..++.++.
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 455689999999999999999999999999998888888999999999999999999998743221 2334444443
Q ss_pred CCcc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEE
Q 019145 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~i 188 (345)
.... ........+........ .....+|||||++.+ ..+..+.|..+++. ..+.+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~----------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~ 318 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLE----------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHS----------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEE
T ss_pred HHHhccccccchHHHHHHHHHHHHH----------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEE
Confidence 2211 11112222222221111 113469999999998 23445556566654 45667
Q ss_pred EEecCccc-----ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHH
Q 019145 189 FFICNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRA 253 (345)
Q Consensus 189 i~~~n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~ 253 (345)
|.+++... ..++++.+||..+.|++|+.++...++...+.. +++.++++++..++..+.| .+..+
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 77776532 456889999999999999999999999887764 6888999999999887643 45577
Q ss_pred HHHHHHHHHHh--------CCCCCHHHHHHhh
Q 019145 254 ITYLQGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 254 ~~~l~~~~~~~--------~~~it~~~v~~~~ 277 (345)
+..++.++... ...|+.+++.+++
T Consensus 399 i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 77776665432 2458888887764
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-17 Score=151.13 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=137.3
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
+...+..|++++|.+..++.+.+++.. ....++||+||||||||++|+++++++ +.+++.+
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~v 269 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLI 269 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 456778999999999999988887753 344569999999999999999999997 6788888
Q ss_pred ecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc
Q 019145 120 NASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (345)
Q Consensus 120 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~ 182 (345)
++....+ ...+...+..... ....+|||||+|.+. ...++.|+..++..
T Consensus 270 n~~~l~~~~~g~~~~~~~~~f~~A~~--------------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~ 335 (489)
T 3hu3_A 270 NGPEIMSKLAGESESNLRKAFEEAEK--------------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (489)
T ss_dssp EHHHHHTSCTTHHHHHHHHHHHHHHH--------------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred EchHhhhhhcchhHHHHHHHHHHHHh--------------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc
Confidence 8753211 1122222222211 124699999997663 35678899999854
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITY 256 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~ 256 (345)
...+.+|.+||.+..+.+++.+ |+. .+.|.+|+.++..++++.+++...+. .+..+..++..+.|. .+.+.+.
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHH
Confidence 3467788899999999999998 665 79999999999999999887654443 233467788888774 4444444
Q ss_pred HHHHHHH
Q 019145 257 LQGAARL 263 (345)
Q Consensus 257 l~~~~~~ 263 (345)
+..++..
T Consensus 415 ~~~A~~~ 421 (489)
T 3hu3_A 415 CSEAALQ 421 (489)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555443
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=137.33 Aligned_cols=207 Identities=23% Similarity=0.238 Sum_probs=136.7
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
....+.+|++++|.++.+..+.+.... ....+++|+|||||||||++++++..+ ...++.++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~------~~~~i~~~ 81 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITAS 81 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEE
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEee
Confidence 345566899999998888776655432 113359999999999999999999987 35566666
Q ss_pred cCCccc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC-
Q 019145 121 ASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (345)
Q Consensus 121 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~- 183 (345)
+.+... .......+........ .....++++||++.+.. ...+.++..++...
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAK----------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHT----------TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----------hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 532110 0011111111111110 01236999999976521 12345555555432
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYL 257 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~~l 257 (345)
....++.++|.+..+++++.+ |+. .+.+++|+.++..++++..++ +..+++++ +..+++.+.|+. +.+.+.+
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 234556677888999999998 554 789999999999999987764 45555554 888999998866 6777777
Q ss_pred HHHHHHh---C-CCCCHHHHHHhh
Q 019145 258 QGAARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~---~-~~it~~~v~~~~ 277 (345)
..++..+ + ..||.+++.+++
T Consensus 230 ~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 230 NEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHh
Confidence 7666543 2 469999988764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=143.36 Aligned_cols=178 Identities=12% Similarity=0.187 Sum_probs=120.8
Q ss_pred ccccccHHHHHHH-------HHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc---h
Q 019145 61 KDVAHQEEVVRVL-------TNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---I 127 (345)
Q Consensus 61 ~~~~g~~~~~~~l-------~~~l~---~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~ 127 (345)
..++|+...+..+ ...+. .....+++|+||||||||++|+++++.+ +.+++.+++++... .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCch
Confidence 3466665544333 33444 2334459999999999999999999997 56778787654211 1
Q ss_pred ----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC----------CHHHHHHHHHHHhh---cCCceEEEE
Q 019145 128 ----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM----------TEDAQNALRRTMET---YSKVTRFFF 190 (345)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l----------~~~~~~~l~~~le~---~~~~~~ii~ 190 (345)
..+...+.... .....+|+|||++.+ ....++.|...++. ....+.+|+
T Consensus 107 ~~~~~~~~~~~~~~~--------------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAY--------------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HHHHHHHHHHHHHHH--------------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHH--------------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 11222222211 124579999999886 45566777777764 234566777
Q ss_pred ecCcccccch-hhhccc-eeEEecCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 019145 191 ICNYISRIIE-PLASRC-AKFRFKPLSE-EVMSSRVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAAR 262 (345)
Q Consensus 191 ~~n~~~~l~~-~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-----~~r~~~~~l~~~~~ 262 (345)
++|.+..+.+ .+.+|+ ..+.+++++. +++..++.. .+ .++++.+..+++.+.| |+|.+++.++.+..
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 8888877666 677785 4789988877 666666543 22 4789999999999987 99999999988764
Q ss_pred H
Q 019145 263 L 263 (345)
Q Consensus 263 ~ 263 (345)
.
T Consensus 248 ~ 248 (272)
T 1d2n_A 248 M 248 (272)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-17 Score=151.21 Aligned_cols=204 Identities=23% Similarity=0.234 Sum_probs=142.5
Q ss_pred CCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.+.+|++++|+++.+..+.+.+.. ..+.+++|+||||||||+++++++..+ ...++.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehhH
Confidence 677999999999998777766532 112359999999999999999999997 46788888764
Q ss_pred ccch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC--Cc
Q 019145 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--KV 185 (345)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~--~~ 185 (345)
.... ......+....... ......+++|||++.+.. ...+.++..++... ..
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a----------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETA----------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTS----------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred HHHhhhhhHHHHHHHHHHHH----------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 3211 11111121111110 011236999999987631 23455666665432 34
Q ss_pred eEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHH
Q 019145 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~~l~~~ 260 (345)
+.++.++|.++.+++++.+ |+. .+.+++|+.++..++++..++ ++.+++++ +..++..+.|+. +.+.+.+..+
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5677778988889999988 454 799999999999999976653 45565554 888999999987 7888888877
Q ss_pred HHHhC----CCCCHHHHHHhh
Q 019145 261 ARLFG----SSITSKDLISVS 277 (345)
Q Consensus 261 ~~~~~----~~it~~~v~~~~ 277 (345)
+..+. ..|+.+++.+++
T Consensus 248 a~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHH
T ss_pred HHHHHHhCCCccCHHHHHHHH
Confidence 76652 459999887765
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=160.57 Aligned_cols=197 Identities=16% Similarity=0.194 Sum_probs=143.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~ 122 (345)
-..+|.++++|..++.++|++..+..+..++.....+++||+||||||||++|+++++.+.+.. ..+..++.+++.
T Consensus 166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g 245 (758)
T 3pxi_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (758)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc
Confidence 3458999999999999999999999999999988888999999999999999999999984321 234556666651
Q ss_pred Cc-c--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc---
Q 019145 123 DD-R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS--- 196 (345)
Q Consensus 123 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~--- 196 (345)
.. . ....+...+..... ....+|||| ...+.++.|+..++. ..+.+|.+||...
T Consensus 246 ~~~~G~~e~~l~~~~~~~~~--------------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 246 TKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRK 305 (758)
T ss_dssp -------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHH
T ss_pred ccccchHHHHHHHHHHHHHh--------------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHH
Confidence 11 0 01123333333221 134599999 444677778888874 4677888887766
Q ss_pred --ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHHHHH
Q 019145 197 --RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRAITYLQGAARL 263 (345)
Q Consensus 197 --~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~------g~~r~~~~~l~~~~~~ 263 (345)
.+++++.+||..+.|++|+.+++..+++..+.. +++.++++++..+++.+. ..++.++..++.++..
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 688999999999999999999999999977665 678899999999988763 3467888888776543
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-17 Score=148.72 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=136.8
Q ss_pred cccccHHHHHHHHHHHH----c--------------------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 019145 62 DVAHQEEVVRVLTNTLE----T--------------------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~----~--------------------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~ 111 (345)
.++|++.+++.+..++. . ....+++|+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 47899999988887762 1 124569999999999999999999998
Q ss_pred CCCceeeeecCCccch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHH
Q 019145 112 YKSRVLELNASDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQN 173 (345)
Q Consensus 112 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~ 173 (345)
+.+++.+++...... ......+......... .......++|+|||++.+... .++
T Consensus 97 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~ 169 (376)
T 1um8_A 97 -DIPIAISDATSLTEAGYVGEDVENILTRLLQASDW------NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 169 (376)
T ss_dssp -TCCEEEEEGGGCC--------CTHHHHHHHHHTTT------CHHHHTTSEEEEETGGGC--------------CHHHHH
T ss_pred -CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccc------hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHH
Confidence 566777776542211 1111112221111000 000013469999999999877 899
Q ss_pred HHHHHHhhcC---------------------CceEEEEecCc--------------------------------------
Q 019145 174 ALRRTMETYS---------------------KVTRFFFICNY-------------------------------------- 194 (345)
Q Consensus 174 ~l~~~le~~~---------------------~~~~ii~~~n~-------------------------------------- 194 (345)
.|+++++... .++.+|+++|.
T Consensus 170 ~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (376)
T 1um8_A 170 ALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 249 (376)
T ss_dssp HHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHH
T ss_pred HHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHH
Confidence 9999998541 33456666541
Q ss_pred ---ccccchhhhccc-eeEEecCCCHHHHHHHHHH----HHH-------H--hCCCCCHHHHHHHHHhcC---CCHHHHH
Q 019145 195 ---ISRIIEPLASRC-AKFRFKPLSEEVMSSRVLH----ICN-------E--EGLNLDAEALSTLSSISQ---GDLRRAI 254 (345)
Q Consensus 195 ---~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~----~~~-------~--~~~~i~~~~~~~l~~~s~---g~~r~~~ 254 (345)
...+.+++.+|+ .++.|+|++.+++..++.. ++. . .++.+++++++.|++.+. |++|.+.
T Consensus 250 ~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 329 (376)
T 1um8_A 250 DLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLR 329 (376)
T ss_dssp HHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHH
T ss_pred HHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHH
Confidence 113568889999 4899999999999998862 211 1 235689999999999865 9999999
Q ss_pred HHHHHHHHHh-----C---C--CCCHHHHHHhhC
Q 019145 255 TYLQGAARLF-----G---S--SITSKDLISVSG 278 (345)
Q Consensus 255 ~~l~~~~~~~-----~---~--~it~~~v~~~~~ 278 (345)
+.++.+.... + . .||.++|.+...
T Consensus 330 ~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 330 AIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 9998876531 1 1 388888877543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=160.32 Aligned_cols=185 Identities=20% Similarity=0.300 Sum_probs=135.7
Q ss_pred ccccccHHHHHHHHHHHHcCC-------CC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHH-
Q 019145 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV- 130 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~- 130 (345)
..++|++..+..+...+.... .+ +++|+||||||||++|+++++.+... +.+++.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 468899999988888876422 11 59999999999999999999998432 457888887653322111
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcccc--
Q 019145 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYISR-- 197 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~~~-- 197 (345)
...+...... .++++|+|||++.++.+.++.|++++++. ..++++|++||....
T Consensus 568 ~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 GGQLTEKVRR-------------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp ---CHHHHHH-------------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred cchhhHHHHh-------------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 0011111111 23469999999999999999999999973 346789999985332
Q ss_pred ----------cchhhhccc-eeEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHh---cCCCHHHHH
Q 019145 198 ----------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTLSSI---SQGDLRRAI 254 (345)
Q Consensus 198 ----------l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~~~~l~~~---s~g~~r~~~ 254 (345)
+.+.+.+|+ .++.|+|++.+++..++...+... .+.+++++++.|++. ..|+.|.+.
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 778999999 599999999999999998877542 346899999999875 368888888
Q ss_pred HHHHHHH
Q 019145 255 TYLQGAA 261 (345)
Q Consensus 255 ~~l~~~~ 261 (345)
+.++...
T Consensus 715 ~~i~~~v 721 (758)
T 3pxi_A 715 RAIQKHV 721 (758)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887654
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=159.42 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=135.1
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH---
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--- 128 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 128 (345)
..++|++..+..+...+.... ..+++|+||||||||++|+++++.+ +..++.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHh
Confidence 468899999988877775421 1258999999999999999999998 4567777765422110
Q ss_pred ------------HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------Cc
Q 019145 129 ------------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KV 185 (345)
Q Consensus 129 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~ 185 (345)
.....+..... ..++.+|+|||++.++++.++.|++++++.. .+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~~-------------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAVI-------------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHH-------------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcCCCCCCcCccccchHHHHHH-------------hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 00011111111 1245799999999999999999999999642 35
Q ss_pred eEEEEecCccc-------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh---------
Q 019145 186 TRFFFICNYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE--------- 230 (345)
Q Consensus 186 ~~ii~~~n~~~-------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~--------- 230 (345)
+.+|+++|... .+.+++.+|+. ++.|+|++.+++..++..++.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 67888988632 57789999994 89999999999999999887632
Q ss_pred CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHH
Q 019145 231 GLNLDAEALSTLSSIS---QGDLRRAITYLQGAA 261 (345)
Q Consensus 231 ~~~i~~~~~~~l~~~s---~g~~r~~~~~l~~~~ 261 (345)
.+.+++++++.|++.+ +++.|.+.+.++...
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 3468999999999876 455888888777665
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=134.49 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=110.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~ 122 (345)
-..+|.++++|..|++++|++..+..+..++......+++|+||||||||++++.+++.+..... .+..++.+++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 45589999999999999999999999999998877778999999999999999999998743211 13445555432
Q ss_pred Ccc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEE
Q 019145 123 DDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 123 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii 189 (345)
... ........+......... .....+|+|||++.+. ....+.|...++. ..+.+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii 156 (187)
T 2p65_A 88 SLIAGAKYRGDFEERLKSILKEVQD---------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCI 156 (187)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHH---------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEE
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHh---------cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEE
Confidence 210 111111112221111111 0134699999999986 4456677777765 456688
Q ss_pred EecCccc-----ccchhhhccceeEEecCCC
Q 019145 190 FICNYIS-----RIIEPLASRCAKFRFKPLS 215 (345)
Q Consensus 190 ~~~n~~~-----~l~~~l~~r~~~i~~~~~~ 215 (345)
+++|... .+.+++.+||..+.+.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 8887654 5789999999999998875
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=134.58 Aligned_cols=204 Identities=24% Similarity=0.249 Sum_probs=134.4
Q ss_pred CCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.+.+|++++|.++.+..+.+.... ....+++|+|||||||||++++++..+ ...++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~------~~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc------CCCEEEecHHH
Confidence 567899999998888777665432 112359999999999999999999987 35666666532
Q ss_pred ccc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------H---HHHHHHHHHHhhcC--Cc
Q 019145 124 DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMETYS--KV 185 (345)
Q Consensus 124 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~---~~~~~l~~~le~~~--~~ 185 (345)
... .......+......... ....++++||++.+. . ...+.++..++... ..
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHT----------SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHh----------cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 110 00111111111111100 123699999997652 1 12233444444322 23
Q ss_pred eEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHH
Q 019145 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~~l~~~ 260 (345)
..++.++|.+..+++++.+ |+. .+.|++|+.++..++++..++ +..+++++ +..++..+.|+. +.+.+.+..+
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4556678888889999988 554 799999999999999987764 45555554 888999998877 6677777766
Q ss_pred HHHh---C-CCCCHHHHHHhh
Q 019145 261 ARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 261 ~~~~---~-~~it~~~v~~~~ 277 (345)
+..+ + ..|+.+++.+++
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 6543 2 469999998764
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=161.35 Aligned_cols=199 Identities=22% Similarity=0.283 Sum_probs=138.7
Q ss_pred ccccccHHHHHHHHHHHHcCC--------C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN--------C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++|++..+..+...+.... + .+++|+||||||||++|+++++.+.+. +.+++.++++.........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchhHHH
Confidence 468899999988888876531 1 358999999999999999999998543 3577888876543321111
Q ss_pred HHHHHHHHh-hhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc---
Q 019145 132 TKIKTFAAV-AVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI--- 195 (345)
Q Consensus 132 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~--- 195 (345)
..+...... .... +.........++++|+|||++.++.+.++.|++++++.. .++.+|++||..
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~ 714 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPL 714 (854)
T ss_dssp GC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHH
T ss_pred HHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHH
Confidence 111000000 0000 000000001235799999999999999999999999653 356789999861
Q ss_pred -----------------------cccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHH
Q 019145 196 -----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTL 242 (345)
Q Consensus 196 -----------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~~~~l 242 (345)
..+.+.+.+|+. ++.|.|++.+++..++..++... .+.+++++++.|
T Consensus 715 ~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L 794 (854)
T 1qvr_A 715 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFL 794 (854)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHH
Confidence 235678889995 78999999999999988876521 245899999999
Q ss_pred HHhcC---CCHHHHHHHHHHHHH
Q 019145 243 SSISQ---GDLRRAITYLQGAAR 262 (345)
Q Consensus 243 ~~~s~---g~~r~~~~~l~~~~~ 262 (345)
++++. |++|.+.+.++.+..
T Consensus 795 ~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 795 AERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHcCCCCCCChHHHHHHHHHHHH
Confidence 99764 999999999887653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=149.35 Aligned_cols=222 Identities=19% Similarity=0.201 Sum_probs=148.7
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------ 125 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------ 125 (345)
..+|+|..|++++|++.++..+...+..+. +++|+||||||||+++++++..+.... ...+.+.+....
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~---~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTET---LEDILVFPNPEDENMPRI 106 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSS---CEEEEEECCTTCTTSCEE
T ss_pred cccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCccc---CCeEEEeCCcccccCCcE
Confidence 458999999999999999999999998874 799999999999999999999873321 111111111000
Q ss_pred ------chHHHHHHHHHHHHh------------------------------------------hhc---------CCC--
Q 019145 126 ------GINVVRTKIKTFAAV------------------------------------------AVG---------SGQ-- 146 (345)
Q Consensus 126 ------~~~~~~~~~~~~~~~------------------------------------------~~~---------~~~-- 146 (345)
....+.+........ ..+ .+.
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 000010100000000 000 000
Q ss_pred ------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---------------------CCceEEEEecCcc--cc
Q 019145 147 ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------------------SKVTRFFFICNYI--SR 197 (345)
Q Consensus 147 ------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---------------------~~~~~ii~~~n~~--~~ 197 (345)
..+....++.+++||||++.+++..++.|++.+++. +.++++|+++|.. ..
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 000001124569999999999999999999999842 1356789999876 67
Q ss_pred cchhhhccce----eEEecC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHhc---CC-------CHHHHHH
Q 019145 198 IIEPLASRCA----KFRFKP---LSEEVMSSRVLHICNEEG-----LNLDAEALSTLSSIS---QG-------DLRRAIT 255 (345)
Q Consensus 198 l~~~l~~r~~----~i~~~~---~~~~~~~~~l~~~~~~~~-----~~i~~~~~~~l~~~s---~g-------~~r~~~~ 255 (345)
+.+++.+||. .+.|.+ ...+.+..++..++...+ ..++++++..|++++ .| ++|.+.+
T Consensus 267 l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ 346 (604)
T 3k1j_A 267 MHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGG 346 (604)
T ss_dssp SCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHH
T ss_pred cCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHH
Confidence 9999999995 455543 245567777766554322 578999999998865 55 6999999
Q ss_pred HHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 256 YLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 256 ~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.++.+...+ ...|+.++|.+++.
T Consensus 347 llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 347 IVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 998776554 34699999998874
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-15 Score=136.59 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=144.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHH-Hc---C---CCCcEEE--eCCCCCCHHHHHHHHHHHhcCC---CCCCC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ET---A---NCPHMLF--YGPPGTGKTTTALAIAHQLFGP---ELYKS 114 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~lll--~G~~G~GKT~la~~la~~l~~~---~~~~~ 114 (345)
...++...|.| +.++|++..+..+..++ .. + ...+++| +||+|+|||++++.+++.+... ...+.
T Consensus 11 ~~~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 87 (412)
T 1w5s_A 11 DRRVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTV 87 (412)
T ss_dssp CGGGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCce
Confidence 33445556655 56899998888887777 42 2 3445889 9999999999999999887321 01134
Q ss_pred ceeeeecCCccchHH-HHHHHHHHHHhhhcCCCCCCC---------CCCCCeEEEEEcCCCCCC------HHHHHHHHHH
Q 019145 115 RVLELNASDDRGINV-VRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMT------EDAQNALRRT 178 (345)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iliiDE~~~l~------~~~~~~l~~~ 178 (345)
.++.+++....+... +...+..+.......+..... .....+.+|+|||++.+. .+.+..+.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 88 KQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 167 (412)
T ss_dssp EEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHH
Confidence 566666533222222 222221110000000000000 001245699999999874 3666667777
Q ss_pred HhhcC-----CceEEEEecCccc---ccc---hhhhccce-eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 019145 179 METYS-----KVTRFFFICNYIS---RII---EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSS 244 (345)
Q Consensus 179 le~~~-----~~~~ii~~~n~~~---~l~---~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~ 244 (345)
+.+.+ ..+.+|++++... .+. +.+.+++. .+.|+|++.+++.+++..++...+. .++++++..+++
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 76543 4566777776543 233 44545543 4999999999999999988765433 488999999999
Q ss_pred hcC------CCHHHHHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 245 ISQ------GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 245 ~s~------g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
.++ |++|.+.+.+..+...+ ...++.+++..+.
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999 99999999987765433 2358888776554
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-15 Score=137.18 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=130.0
Q ss_pred ccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh
Q 019145 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (345)
..++|+++++..+...+..+. +++|+||||||||++|+++++.+.. ...+..+.+... ....+..........
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~~~~~~~~-t~~dL~G~~~~~~~~ 94 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN----ARAFEYLMTRFS-TPEEVFGPLSIQALK 94 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSS----CCEEEEECCTTC-CHHHHHCCBC-----
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhh----hhHHHHHHHhcC-CHHHhcCcccHHHHh
Confidence 358899999998888887765 7999999999999999999998721 223333333321 111111100000000
Q ss_pred hhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----------CceEEEEecCcccc---cchhhhccce
Q 019145 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYISR---IIEPLASRCA 207 (345)
Q Consensus 141 ~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------~~~~ii~~~n~~~~---l~~~l~~r~~ 207 (345)
..+.-............+++|||++.++++.++.|+..+++.. +...+|++||.... ..+++.+|+.
T Consensus 95 ~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 95 DEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML 174 (500)
T ss_dssp -----CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC
T ss_pred hchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH
Confidence 0000000000001134599999999999999999999997532 12234777775332 4468999986
Q ss_pred -eEEecCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHHhc----------CCCHHH
Q 019145 208 -KFRFKPLSE-EVMSSRVLHIC-----------------------NEEGLNLDAEALSTLSSIS----------QGDLRR 252 (345)
Q Consensus 208 -~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~i~~~~~~~l~~~s----------~g~~r~ 252 (345)
.+.+++|+. ++...++.... ...++.+++++++.+++.. +.+.|.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~ 254 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRR 254 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhH
Confidence 578888876 56666665432 1236778999999988765 568888
Q ss_pred HHHHHHHHHHHh---C-CCCCHHHHH
Q 019145 253 AITYLQGAARLF---G-SSITSKDLI 274 (345)
Q Consensus 253 ~~~~l~~~~~~~---~-~~it~~~v~ 274 (345)
++..+..+...+ | ..|+.+||.
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHHhhcCCccccchHHH
Confidence 777765443333 4 458999988
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=140.86 Aligned_cols=205 Identities=20% Similarity=0.219 Sum_probs=133.2
Q ss_pred cccccHHHHHHHHHHHHc---------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~---------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
.++|++.+++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.+++.....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhcc
Confidence 368999999988887731 134569999999999999999999998 67888888754221
Q ss_pred hH----HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHHHHHHHHhhc------
Q 019145 127 IN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETY------ 182 (345)
Q Consensus 127 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~~l~~~le~~------ 182 (345)
.. .....+......... ........+|+|||++.++.. .++.|+++++..
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDY------DVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTT------CHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred cccccccHHHHHHHHHHHhhh------hHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 11 111112221111000 000012459999999988754 899999999831
Q ss_pred ---------------CCceEEEEecCcc----------cc-----------------------------------cchhh
Q 019145 183 ---------------SKVTRFFFICNYI----------SR-----------------------------------IIEPL 202 (345)
Q Consensus 183 ---------------~~~~~ii~~~n~~----------~~-----------------------------------l~~~l 202 (345)
..+..+|++++.. .. +.+++
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 0223344444321 11 57888
Q ss_pred hccce-eEEecCCCHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHh-
Q 019145 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICN-------EEG--LNLDAEALSTLSSIS---QGDLRRAITYLQGAARLF- 264 (345)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~i~~~~~~~l~~~s---~g~~r~~~~~l~~~~~~~- 264 (345)
.+|+. ++.|.|++.+++..++.. ... ..+ +.+++++++.|++.+ +++.|.+.+.++.+....
T Consensus 244 ~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l 323 (363)
T 3hws_A 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTM 323 (363)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHH
Confidence 99998 566999999998888765 221 123 347999999999753 677888888887766432
Q ss_pred ----C--C----CCCHHHHHHhhC
Q 019145 265 ----G--S----SITSKDLISVSG 278 (345)
Q Consensus 265 ----~--~----~it~~~v~~~~~ 278 (345)
. . .||.++|++..+
T Consensus 324 ~~~~~~~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 324 YDLPSMEDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp HSTTTCCCSEEEECHHHHTTCCSC
T ss_pred HhcccccCCceeEEcHHHHhCcCC
Confidence 1 1 266666665543
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=150.54 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=125.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+++.|.++.++.|++++.- ..+.++|||||||||||++|+++|+++ +.+++.++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhH
Confidence 345889999998888888877632 123459999999999999999999998 7788888875
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC--
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS-- 183 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~-- 183 (345)
+.. +...++..+..... ..+.||+|||+|.+.. ...+.|+..++...
T Consensus 273 ~l~sk~~gese~~lr~lF~~A~~--------------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 273 EIMSKLAGESESNLRKAFEEAEK--------------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp HHHSSCTTHHHHHHHHHHHHHTT--------------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred HhhcccchHHHHHHHHHHHHHHH--------------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 421 22233343333221 2346999999998842 34567777777543
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~ 249 (345)
..+.+|.+||.++.+++++++ |+. .++++.|+.++..++++..++..... ++..+..+++.+.|-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCC
Confidence 356778889999999999998 777 79999999999999998766443222 222377888887653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=123.30 Aligned_cols=208 Identities=17% Similarity=0.147 Sum_probs=125.7
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+++++.+.+.+.. ....+++|+||||||||+++++++..+ +..++.+++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPE 79 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHH
Confidence 45889999999998888775421 123349999999999999999999987 44677787765
Q ss_pred ccch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC--CceEE
Q 019145 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRF 188 (345)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~--~~~~i 188 (345)
.... ......+......... ....++++||++.+.. ...+.++..++... ..+.+
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~----------~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKN----------SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHH----------TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHh----------cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 3221 1112222222111100 1235999999998631 12345555565432 34556
Q ss_pred EEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHh-CCCCCH-HHHHHHHHh------cCCCHHHHHHHH
Q 019145 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE-GLNLDA-EALSTLSSI------SQGDLRRAITYL 257 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~-~~~i~~-~~~~~l~~~------s~g~~r~~~~~l 257 (345)
+.++|.++.+++++.+ |++ .+.++.|+.++..++++..++.. ...++. ..+..++.. ++.|+..+++..
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a 229 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREA 229 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHH
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHH
Confidence 6778999999999987 777 78999999999999998877542 222322 235666653 333554444433
Q ss_pred HHHHHHh------------CCCCCHHHHHHhhCCC
Q 019145 258 QGAARLF------------GSSITSKDLISVSGVI 280 (345)
Q Consensus 258 ~~~~~~~------------~~~it~~~v~~~~~~~ 280 (345)
...+... ...|+.+|..+++...
T Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 230 SICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp HHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred HHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 2222110 1247777777776554
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=152.88 Aligned_cols=182 Identities=21% Similarity=0.226 Sum_probs=117.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD- 123 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~- 123 (345)
.+|+++.|.+++++.|.+.+.. .....+|||||||||||.+|+++|+++ +.+++.+++++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l 547 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL 547 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchh
Confidence 4788999999999988877632 122349999999999999999999998 77888776543
Q ss_pred -----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC-
Q 019145 124 -----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (345)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~- 183 (345)
..+...++..+...... .+.||||||+|.+.. ...+.|+..++...
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~--------------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA--------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT--------------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred hccccchHHHHHHHHHHHHHHc--------------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 23344556665554332 235999999998842 13567888887543
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----cCCCHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----SQGDLRRAIT 255 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----s~g~~r~~~~ 255 (345)
..+.+|.+||.++.+++++++ |++ .++|+.|+.++..++++..+++..+. ++..++.|++. |+.|+..+++
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHH
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 356677789999999999998 887 88999999999999997776543332 12235666654 4667777665
Q ss_pred HHHHH
Q 019145 256 YLQGA 260 (345)
Q Consensus 256 ~l~~~ 260 (345)
.....
T Consensus 693 ~A~~~ 697 (806)
T 3cf2_A 693 RACKL 697 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=116.49 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=93.0
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
+++|+...+..+.+.+.. ....+++|+||||||||++|+++++.... .+.+++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~---~~~~~v-~~~~~~~~~~~~~~~~~~a-- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN---AQGEFV-YRELTPDNAPQLNDFIALA-- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT---TTSCCE-EEECCTTTSSCHHHHHHHH--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc---cCCCEE-EECCCCCcchhhhcHHHHc--
Confidence 578988888888877754 34457999999999999999999987521 244666 7776543322222222221
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc-------ccchhhhccce--eEE
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------RIIEPLASRCA--KFR 210 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~-------~l~~~l~~r~~--~i~ 210 (345)
..++|+|||++.++.+.+..|+.+++..+..+++|+++|... .+.+.+..|+. .+.
T Consensus 76 ---------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~ 140 (145)
T 3n70_A 76 ---------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
T ss_dssp ---------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEE
T ss_pred ---------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEe
Confidence 124899999999999999999999988777888999998642 34566666655 566
Q ss_pred ecCC
Q 019145 211 FKPL 214 (345)
Q Consensus 211 ~~~~ 214 (345)
++|+
T Consensus 141 lPpL 144 (145)
T 3n70_A 141 CLPL 144 (145)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-14 Score=123.50 Aligned_cols=149 Identities=13% Similarity=0.191 Sum_probs=98.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
.++|+||||||||++|+++++++ +.+++.++++...+ ...+...+........ ...+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~----------~~~~~ 101 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR----------KGNMC 101 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT----------TSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh----------cCCCe
Confidence 48999999999999999999999 67888887643211 1122223322211100 12346
Q ss_pred EEEEcCCCCCCH-------------HHHHHHHHHHhhc-------------CCceEEEEecCcccccchhhhc--cceeE
Q 019145 158 IIILDEADSMTE-------------DAQNALRRTMETY-------------SKVTRFFFICNYISRIIEPLAS--RCAKF 209 (345)
Q Consensus 158 iliiDE~~~l~~-------------~~~~~l~~~le~~-------------~~~~~ii~~~n~~~~l~~~l~~--r~~~i 209 (345)
||+|||+|.+.. ..++.|+++++.. ..++.+|++||.++.+++++++ |+..+
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 999999998754 2447888888622 2467899999999999999986 66643
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-hcCCCHH
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-ISQGDLR 251 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~-~s~g~~r 251 (345)
.+ .|+.++..++++..+...++ +.+.+..+.. .++.++.
T Consensus 182 i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 182 YW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp EE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCHH
T ss_pred Ee-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccHH
Confidence 34 46999999999988876654 4555555554 4556664
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-14 Score=126.51 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCCCH------------HHHHHHHHHHhhc----------CCceEEEEec----Ccccccchhhhcccee
Q 019145 155 PYKIIILDEADSMTE------------DAQNALRRTMETY----------SKVTRFFFIC----NYISRIIEPLASRCAK 208 (345)
Q Consensus 155 ~~~iliiDE~~~l~~------------~~~~~l~~~le~~----------~~~~~ii~~~----n~~~~l~~~l~~r~~~ 208 (345)
+..++++||+|++.. .+|+.|++++|.. ..++.||+++ +.+..+.+.+.+|+.+
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 355899999998853 2678999999852 2456677776 2334466899999995
Q ss_pred -EEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHh--
Q 019145 209 -FRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSI--------SQGDLRRAITYLQGAARLF-- 264 (345)
Q Consensus 209 -i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~--------s~g~~r~~~~~l~~~~~~~-- 264 (345)
+.|++++.+++..++.. .+..+++ .++++++..|++. -++..|.+-+.++++..-.
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 89999999999999831 2222343 4899999999985 2466777777776655321
Q ss_pred ---C---C--CCCHHHHHHhhCCCCH
Q 019145 265 ---G---S--SITSKDLISVSGVIPP 282 (345)
Q Consensus 265 ---~---~--~it~~~v~~~~~~~~~ 282 (345)
. . .||.+.|.+.++....
T Consensus 410 ~~~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 410 SASDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp HGGGCTTCEEEECHHHHHHHHTTTTT
T ss_pred hccccCCCeEEEeHHHHHHhcCcccc
Confidence 1 1 2899999888875443
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-15 Score=114.52 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=88.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
+++|+...++.+.+.+.. ....+++|+||||||||++|+++++.. . +++.+++..... ......+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~-~~~~~~~~~--- 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLI-DMPMELLQK--- 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHH-HCHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCCh-HhhhhHHHh---
Confidence 578888888877777654 444579999999999999999998875 2 778888775321 111112111
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-CceEEEEecCccc-c----cchhhhccce--eEEe
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTRFFFICNYIS-R----IIEPLASRCA--KFRF 211 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~-~----l~~~l~~r~~--~i~~ 211 (345)
...++|+|||++.++.+.+..|++++++.. ..+++|+++|... . +.+.+..|+. .+.+
T Consensus 74 --------------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~l 139 (143)
T 3co5_A 74 --------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRI 139 (143)
T ss_dssp --------------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEE
T ss_pred --------------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeC
Confidence 123599999999999999999999998763 5678888887542 2 4456666755 4566
Q ss_pred cCC
Q 019145 212 KPL 214 (345)
Q Consensus 212 ~~~ 214 (345)
+|+
T Consensus 140 PpL 142 (143)
T 3co5_A 140 PPL 142 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=145.30 Aligned_cols=207 Identities=18% Similarity=0.126 Sum_probs=129.1
Q ss_pred CCccccccHHHHHHHHHHHHcCCCC-----------cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee----ecCC
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCP-----------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL----NASD 123 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~-----------~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~----~~~~ 123 (345)
-...++|++.++..+...+..+... ++||+||||||||++|+++++.+.. .++.. ++.+
T Consensus 293 l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r------~~~~~~~~~~~~~ 366 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR------AVYTTGKGSTAAG 366 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC------EECCCTTCSTTTT
T ss_pred hcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC------ceecCCCcccccc
Confidence 3356889999988887776665311 7999999999999999999987621 11111 1111
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEE
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFF 190 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~ 190 (345)
... ......... ......+....+..++++|||++.++++.++.|++.+++.. ..+.+|.
T Consensus 367 l~~-~~~~~~~~g------~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 367 LTA-AVVREKGTG------EYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp SEE-ECSSGGGTS------SCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred ccc-eeeeccccc------cccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 000 000000000 00000000001234699999999999999999999998533 3466888
Q ss_pred ecCccc-------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh-------------------------C
Q 019145 191 ICNYIS-------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE-------------------------G 231 (345)
Q Consensus 191 ~~n~~~-------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------------~ 231 (345)
++|+.. .+++++.+||+ ++.+.+++..+...+.......+ .
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~ 519 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVT 519 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHC
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCC
Confidence 888765 78899999996 55555555444444444333221 2
Q ss_pred CCCCHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 232 LNLDAEALSTLSSI---------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 232 ~~i~~~~~~~l~~~---------------s~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
..+++++.+.|.+. .++++|.+.+.+..+...+ ...|+.+||.+++.
T Consensus 520 p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 520 PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 25677777777765 4678888877776554433 35699999988753
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=123.19 Aligned_cols=212 Identities=18% Similarity=0.214 Sum_probs=140.9
Q ss_pred CccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHH
Q 019145 60 VKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (345)
+..++|+...+..+...+.. ....+++++|++||||+++|+.++... .....+|+.++|... ....+...+-..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s---~r~~~~fv~v~~~~~-~~~~~~~elfg~ 211 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS---DRSKEPFVALNVASI-PRDIFEAELFGY 211 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS---TTTTSCEEEEETTTS-CHHHHHHHHHCB
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc---CCCCCCeEEEecCCC-CHHHHHHHhcCC
Confidence 45678887777766666544 223358999999999999999998764 223568999999863 222222211110
Q ss_pred HHhhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cc
Q 019145 138 AAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SR 197 (345)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~ 197 (345)
......+. ...+....+..+.|++||++.++.+.|..|++++++.. .++++|++||.. ..
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 00000000 01111112445799999999999999999999998632 357788888753 23
Q ss_pred cchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-
Q 019145 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (345)
Q Consensus 198 l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~- 264 (345)
+.+.+..|.. .+.++|+.. +++..++..++ .+.+. .+++++++.+..+. .||+|.+.|.++.++..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 4566666765 466666653 66665555544 33343 37999999999876 899999999999998776
Q ss_pred CCCCCHHHHHH
Q 019145 265 GSSITSKDLIS 275 (345)
Q Consensus 265 ~~~it~~~v~~ 275 (345)
+..|+.+++..
T Consensus 372 ~~~i~~~~l~~ 382 (387)
T 1ny5_A 372 GKFIDRGELSC 382 (387)
T ss_dssp SSEECHHHHHH
T ss_pred CCcCcHHHCcH
Confidence 44588887654
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=121.61 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=132.2
Q ss_pred ccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
..++|+...+..+...+.. ....+++++|++||||+.+++.+++.... ...++.++|..... ..+...+-...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r----~~~fv~vnc~~~~~-~~~~~~lfg~~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR----KGAFVDLNCASIPQ-ELAESELFGHE 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC----CSCEEEEESSSSCT-TTHHHHHHEEC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc----cCCcEEEEcccCCh-HHHHHHhcCcc
Confidence 3577877766655554432 23345999999999999999999887522 12388999986422 22221111000
Q ss_pred HhhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------ccc
Q 019145 139 AVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRI 198 (345)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l 198 (345)
....... ...+....+..+.|++||++.++...|..|++++++.. .++++|++||.. ..+
T Consensus 204 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 204 KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 0000000 00000111345689999999999999999999998632 256788888753 234
Q ss_pred chhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 019145 199 IEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 199 ~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~~ 265 (345)
.+.+..|+. .+.++|+.. +++..++..++. ..+ ..+++++++.|..+. .||+|.+.|.++.++..+.
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~ 362 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCE 362 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 567778877 466888766 677666555543 334 348999999999987 9999999999999987653
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-12 Score=114.54 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=122.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------chHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRT 132 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (345)
.-..++|+++.+..|..++..+ +.++++||+|+|||++++.+++.. + ++.+++.... +...+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHHH
Confidence 3457899999999999998875 578999999999999999999885 2 4444443211 1111111
Q ss_pred HHHHHHHh------hh-------cCCCC--CCCC-----------CCCCeEEEEEcCCCCCCH-------HHHHHHHHHH
Q 019145 133 KIKTFAAV------AV-------GSGQR--RGGY-----------PCPPYKIIILDEADSMTE-------DAQNALRRTM 179 (345)
Q Consensus 133 ~~~~~~~~------~~-------~~~~~--~~~~-----------~~~~~~iliiDE~~~l~~-------~~~~~l~~~l 179 (345)
.+...... .. +.... .... ....+.+|+|||++.+.. +....|..++
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 11110000 00 00000 0000 000246899999999753 4556666666
Q ss_pred hhcCCceEEEEecCccccc---------chhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 019145 180 ETYSKVTRFFFICNYISRI---------IEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (345)
Q Consensus 180 e~~~~~~~ii~~~n~~~~l---------~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~ 249 (345)
+.. .++.+|+++.....+ ...+..|. ..+.+.|++.++..+++...+...|..++++.+..+.+.++|+
T Consensus 160 ~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 553 467778777543211 12233343 4899999999999999998887788889999999999999999
Q ss_pred HHHHHHHHHH
Q 019145 250 LRRAITYLQG 259 (345)
Q Consensus 250 ~r~~~~~l~~ 259 (345)
+..+......
T Consensus 239 P~~l~~~~~~ 248 (350)
T 2qen_A 239 PGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9875544443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-13 Score=108.49 Aligned_cols=133 Identities=13% Similarity=0.186 Sum_probs=79.6
Q ss_pred hhhCCCCCccccc----cHHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 53 EKYRPKQVKDVAH----QEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 53 ~~~~p~~~~~~~g----~~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
++|++.+|+++++ +..++..+..++..- ...+++|+||+|+||||+++++++.+.... +..++.++..
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~~--- 76 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDTK--- 76 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEHH---
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEHH---
Confidence 5899999999986 455666666666543 234689999999999999999999873111 1122222221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCC--CCCHHHHHHHHHHHhhcC-CceEEEEecCccc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~--~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~ 196 (345)
.+...+......... ........+.++|++||++ .++......+..+++... ....+|++||...
T Consensus 77 ---~~~~~~~~~~~~~~~---~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 77 ---DLIFRLKHLMDEGKD---TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ---HHHHHHHHHHHHTCC---SHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ---HHHHHHHHHhcCchH---HHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 111111110000000 0000000134699999998 567777778888887653 4567888887654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=109.21 Aligned_cols=189 Identities=17% Similarity=0.140 Sum_probs=117.8
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-----cchHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 133 (345)
....++|+++.+..|.. +.. +.++++||+|+|||++++.+++.+. ..++.+++... .+.......
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhccccCCCHHHHHHH
Confidence 34578999999999988 655 5789999999999999999999872 23444554321 111111111
Q ss_pred HHHHHHh-----------hhc-------C-CCC------CCCC---------CCC-CeEEEEEcCCCCCCH----HHHHH
Q 019145 134 IKTFAAV-----------AVG-------S-GQR------RGGY---------PCP-PYKIIILDEADSMTE----DAQNA 174 (345)
Q Consensus 134 ~~~~~~~-----------~~~-------~-~~~------~~~~---------~~~-~~~iliiDE~~~l~~----~~~~~ 174 (345)
+...... ... . ... .... ... .+-+|+|||++.+.. +....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 1111100 000 0 000 0000 001 256899999999753 34445
Q ss_pred HHHHHhhcCCceEEEEecCcccccc---------hhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019145 175 LRRTMETYSKVTRFFFICNYISRII---------EPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (345)
Q Consensus 175 l~~~le~~~~~~~ii~~~n~~~~l~---------~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~ 244 (345)
|..+.+.. .++.+|++++....+. ..+..|. ..+.+.|++.++..+++...+...+...++. ..+.+
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 55555543 4677888876532111 2234454 5899999999999999998877677776654 88999
Q ss_pred hcCCCHHHHHHHHHHH
Q 019145 245 ISQGDLRRAITYLQGA 260 (345)
Q Consensus 245 ~s~g~~r~~~~~l~~~ 260 (345)
.++|++..+...+..+
T Consensus 238 ~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999866555443
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=107.20 Aligned_cols=203 Identities=16% Similarity=0.100 Sum_probs=122.7
Q ss_pred ccccHHHHHHHHHHHHcCC-----CCcEEEeCCCCCCHHHHHHHH-HHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 63 VAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAI-AHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~-----~~~lll~G~~G~GKT~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
+.|++.++..+.-.+..+. .-|+||.|+||| ||.+++.+ ++.+ .. ..+....++. ...+...+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR----~~ft~g~~ss---~~gLt~s~-- 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PR----GVYVDLRRTE---LTDLTAVL-- 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SS----EEEEEGGGCC---HHHHSEEE--
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CC----eEEecCCCCC---ccCceEEE--
Confidence 7899999888887776663 126999999999 99999999 5543 11 1111111111 00000000
Q ss_pred HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---------CCceEEEEecCccc-----------
Q 019145 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------SKVTRFFFICNYIS----------- 196 (345)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---------~~~~~ii~~~n~~~----------- 196 (345)
.. ..+....++....+..+++++||++.++.+.+..|++.|++. +..+.+|.++|+..
T Consensus 284 -r~-~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 284 -KE-DRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp -EE-SSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred -Ec-CCCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 00 000000111112345579999999999999999999999963 45677888888754
Q ss_pred ccchhhhccceeEEe---------------cCCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHhc--------------
Q 019145 197 RIIEPLASRCAKFRF---------------KPLSEEVMSSRVLHIC-NEEGLNLDAEALSTLSSIS-------------- 246 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~---------------~~~~~~~~~~~l~~~~-~~~~~~i~~~~~~~l~~~s-------------- 246 (345)
.+++++++||+.+.. +.++.+++++++...- ......+++++.+.|.+..
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~ 441 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMG 441 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccc
Confidence 688999999974322 1234555666655432 1235668898887776431
Q ss_pred ----CCCHHHHHHHHHHHHHH---hC-CCCCHHHHHHhhC
Q 019145 247 ----QGDLRRAITYLQGAARL---FG-SSITSKDLISVSG 278 (345)
Q Consensus 247 ----~g~~r~~~~~l~~~~~~---~~-~~it~~~v~~~~~ 278 (345)
+-.+|.+..++.-+-+. .+ ..|+.+||.+++.
T Consensus 442 ~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 442 LPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 23566655555433222 23 4588888877643
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=108.16 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=83.5
Q ss_pred cCcchhhhhhCCCCCcccc-ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 46 QSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~-g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+.||.++|+|.+|+++- +|..++..+..++..+.. +++|.|+||||||+++..+++.+..... ..++.+ +...
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~-a~T~ 84 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--TGIILA-APTH 84 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEE-ESSH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEe-cCcH
Confidence 5677999999999999998 688888888888877653 7999999999999999999998854322 122322 2222
Q ss_pred cchHHHHHHH-------HHHHHhhhcCCC------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEe
Q 019145 125 RGINVVRTKI-------KTFAAVAVGSGQ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 125 ~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~ 191 (345)
.....+.+.+ ..+......... ........++++|+|||++.++...+..|...+. ....++++
T Consensus 85 ~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~v 161 (459)
T 3upu_A 85 AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGI 161 (459)
T ss_dssp HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEE
T ss_pred HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEE
Confidence 2222222211 111111000000 0111223457899999999999998888888774 45678888
Q ss_pred cCccc
Q 019145 192 CNYIS 196 (345)
Q Consensus 192 ~n~~~ 196 (345)
++...
T Consensus 162 GD~~Q 166 (459)
T 3upu_A 162 GDNKQ 166 (459)
T ss_dssp ECTTS
T ss_pred CCHHH
Confidence 75443
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=108.44 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=72.6
Q ss_pred hhhhhCCCCCcccccc----HHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecC
Q 019145 51 WVEKYRPKQVKDVAHQ----EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNAS 122 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~----~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~ 122 (345)
+.+.+++.+|+++++. ..+...+..++... ...+++|+||||||||+++.++++.+. .. +..+..++++
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~~ 190 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHFP 190 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEHH
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEHH
Confidence 3456778899999862 33555666777653 245799999999999999999999884 22 2344444332
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHH-HHHHhhc-CCceEEEEecCcc
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNAL-RRTMETY-SKVTRFFFICNYI 195 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l-~~~le~~-~~~~~ii~~~n~~ 195 (345)
+ .+..+...................++|||||++.... ..++.+ ..+++.. .....+|++||..
T Consensus 191 ~---------l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 191 S---------FAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp H---------HHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred H---------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1 1111111000000000000011346999999976543 223323 3355543 2345688888743
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=99.28 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred hhhhhCCCCCccccccH----HHHHHHHHHHHcCC----CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 51 WVEKYRPKQVKDVAHQE----EVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~----~~~~~l~~~l~~~~----~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
+.++|++.+|+++++.. .++..+..++.... ..+++|+||+|||||++++++++.+... +..++.+++.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~ 91 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVP 91 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhH
Confidence 44678899999999643 35566777776542 2579999999999999999999988432 2344444442
Q ss_pred CccchHHHH---------HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--HHHHHH-HHHhhc-CCceEEE
Q 019145 123 DDRGINVVR---------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALR-RTMETY-SKVTRFF 189 (345)
Q Consensus 123 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--~~~~l~-~~le~~-~~~~~ii 189 (345)
.. ...+. ..+..+. ...+|+|||++..... .+..++ .+++.. .....+|
T Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~----------------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i 153 (202)
T 2w58_A 92 EL--FRELKHSLQDQTMNEKLDYIK----------------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTF 153 (202)
T ss_dssp HH--HHHHHHC---CCCHHHHHHHH----------------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEE
T ss_pred HH--HHHHHHHhccchHHHHHHHhc----------------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 10 00000 0011110 1249999999775432 233233 455443 3455688
Q ss_pred EecCcc
Q 019145 190 FICNYI 195 (345)
Q Consensus 190 ~~~n~~ 195 (345)
++||..
T Consensus 154 ~tsn~~ 159 (202)
T 2w58_A 154 FTSNFD 159 (202)
T ss_dssp EEESSC
T ss_pred EEcCCC
Confidence 888753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=94.55 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
+...+..+..+ ....++|+||+|+|||+++++++..+.. .+..++.++..+.... .+
T Consensus 24 n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~~--------~~-------- 80 (149)
T 2kjq_A 24 NAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPLT--------DA-------- 80 (149)
T ss_dssp THHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCCC--------GG--------
T ss_pred cHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhHH--------HH--------
Confidence 44555555444 3446899999999999999999998743 1334566666543222 00
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC--ceEEEEecCcc-ccc--chhhhccce
Q 019145 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK--VTRFFFICNYI-SRI--IEPLASRCA 207 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~-~~l--~~~l~~r~~ 207 (345)
..+.++++|||++.+....++.|+.+++.... ...+|++++.. ..+ .+.+.+|+.
T Consensus 81 -------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 81 -------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp -------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred -------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 01235999999999987668888888775432 22367777643 222 288888875
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=97.32 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=87.4
Q ss_pred HHHHHHHHHcC-CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC
Q 019145 70 VRVLTNTLETA-NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 70 ~~~l~~~l~~~-~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
...+..|++.. .. ..++|+||||||||+++.++++.+. . ...++.... .+....
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~------l-~G~vn~~~~-----------~f~l~~------ 145 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP------F-YGCVNWTNE-----------NFPFND------ 145 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS------C-EEECCTTCS-----------SCTTGG------
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc------c-cceeecccc-----------cccccc------
Confidence 35677777765 32 3499999999999999999999751 1 111221110 000000
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh--------hcC-----CceEEEEecCc----------c-cccchhhh
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTME--------TYS-----KVTRFFFICNY----------I-SRIIEPLA 203 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le--------~~~-----~~~~ii~~~n~----------~-~~l~~~l~ 203 (345)
.....+++.||..... +..+.+..+++ ... ..+.+|++||. . ....+.|.
T Consensus 146 -----~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~ 219 (267)
T 1u0j_A 146 -----CVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQ 219 (267)
T ss_dssp -----GSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHH
T ss_pred -----ccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHh
Confidence 0123467777766554 45566777776 222 45678888886 1 24568899
Q ss_pred ccceeEEec--------CCCHHHHHHHHHHHHHHhCCCCC
Q 019145 204 SRCAKFRFK--------PLSEEVMSSRVLHICNEEGLNLD 235 (345)
Q Consensus 204 ~r~~~i~~~--------~~~~~~~~~~l~~~~~~~~~~i~ 235 (345)
+|+..+.|. +++.++++.++... +.++.+++
T Consensus 220 sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 220 DRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp TTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred hhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 999999998 89999999999844 66666654
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=122.63 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=102.1
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
-+..++..+ .++||+||||||||++|+.+.... .+..+..++.+...+...+...+...........-...++
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P 1331 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP 1331 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC
Confidence 344555555 379999999999999997666543 2456777777766665555555544321110000000011
Q ss_pred -CCCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEecCcc-----cccchhhhccce
Q 019145 152 -PCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRCA 207 (345)
Q Consensus 152 -~~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~------------~~~~ii~~~n~~-----~~l~~~l~~r~~ 207 (345)
..+++.|++|||++.... ...+.|.++++... .++.+|.++|++ ..+++++.+||.
T Consensus 1332 ~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1332 KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Confidence 123456999999876532 47788888887421 235678888887 479999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
++.++.|+.+++..++..+...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999888764
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=91.03 Aligned_cols=119 Identities=22% Similarity=0.322 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 67 EEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
...+..++.+++.-.. .+++|+||||||||++|.++++.+.+ .++.+..... . +. ..
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s-~----------f~-l~---- 99 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTS-H----------FW-LE---- 99 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSS-C----------GG-GG----
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccc-h----------hh-hc----
Confidence 4456777777775322 25899999999999999999999832 2222211110 0 00 00
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCHHH-HHHHHHHHhhcC-------------CceEEEEecCc---ccccchhhhcccee
Q 019145 146 QRRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYS-------------KVTRFFFICNY---ISRIIEPLASRCAK 208 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l~~~~-~~~l~~~le~~~-------------~~~~ii~~~n~---~~~l~~~l~~r~~~ 208 (345)
...+.+++++||++.-.... ...+..+++..+ ...++|+|||. .....+.|.+|+..
T Consensus 100 ------~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~ 173 (212)
T 1tue_A 100 ------PLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITV 173 (212)
T ss_dssp ------GGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEE
T ss_pred ------ccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEE
Confidence 00124599999998432222 235666666532 13578999986 34455789999998
Q ss_pred EEecC
Q 019145 209 FRFKP 213 (345)
Q Consensus 209 i~~~~ 213 (345)
+.|+.
T Consensus 174 f~F~~ 178 (212)
T 1tue_A 174 FEFPN 178 (212)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 88873
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-07 Score=101.23 Aligned_cols=169 Identities=22% Similarity=0.251 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
++....+..++..+. ..++.||+|||||++++.+|+.+ +..++.++|.+......+...+.......
T Consensus 632 dr~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~G----- 698 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQIG----- 698 (2695)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhcC-----
Confidence 344456666666554 57899999999999999999999 88899999998888777766666554432
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHH-------Hhhc-------------CCceEEEEecCc----ccccchhh
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRT-------METY-------------SKVTRFFFICNY----ISRIIEPL 202 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~-------le~~-------------~~~~~ii~~~n~----~~~l~~~l 202 (345)
..+++||++.++.+++..+.+. +.+. .+.+.+++|.|+ ...+++.+
T Consensus 699 ----------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~L 768 (2695)
T 4akg_A 699 ----------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENL 768 (2695)
T ss_dssp ----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHH
T ss_pred ----------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHH
Confidence 3899999999999887766333 2211 234556777773 45689999
Q ss_pred hccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hc------CCCHHHHHHHHHHHH
Q 019145 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-------IS------QGDLRRAITYLQGAA 261 (345)
Q Consensus 203 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~-------~s------~g~~r~~~~~l~~~~ 261 (345)
++||..+.+..|+.+.+.+++.. ..|+...+.....++. .. ...+|.+...|..+.
T Consensus 769 k~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 769 KKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred HhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 99999999999999988888643 3455544444443332 11 235777777666544
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=110.54 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=118.2
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC--CCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRG 149 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (345)
-+..++..+. ++||+||||||||.++..+...+ .+..++.++.+...+...+...+.......... +.. .
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l-----~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~-~ 1367 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAF-----PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV-L 1367 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGC-----TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE-E
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhC-----CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc-c
Confidence 4455555543 69999999999998887665544 134567788887777666655554322211110 100 1
Q ss_pred CCC-CCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEecCcc-----cccchhhhcc
Q 019145 150 GYP-CPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASR 205 (345)
Q Consensus 150 ~~~-~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~------------~~~~ii~~~n~~-----~~l~~~l~~r 205 (345)
.+. .++.-|++|||++.-.. ...+.|.++++... .++.+|.++|++ ..+.+++.+|
T Consensus 1368 ~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1368 RPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447 (3245)
T ss_dssp EESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred CCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhh
Confidence 122 24567999999987653 47888999988421 245677777765 4588999999
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCC------CCCHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGL------NLDAEALSTLSSI---------------SQGDLRRAITYLQGAARL 263 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~------~i~~~~~~~l~~~---------------s~g~~r~~~~~l~~~~~~ 263 (345)
|.++.++.|+.+++..+...+....-- .+.+..++..++. .--|+|++.+.++-+...
T Consensus 1448 F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1448 APILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 999999999999999997776543211 1223333333321 123888888888766543
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.6e-08 Score=92.59 Aligned_cols=189 Identities=12% Similarity=0.060 Sum_probs=105.5
Q ss_pred hCCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhc--CCCCCCCceeeeecCCccchHHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF--GPELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
-.|.....++|++..+..|..++... ....+.|+||+|+|||++|..+++... ...+ ...++.++...... ..+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~v~wv~~~~~~~-~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-PGGVHWVSVGKQDK-SGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-TTCEEEEEEESCCH-HHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-CCceEEEECCCCch-HHH
Confidence 34666678999999999999999742 333479999999999999999875320 0111 11233333222111 111
Q ss_pred HHHHHHHHHhhhc-CCC--CCCCC-------------CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 131 RTKIKTFAAVAVG-SGQ--RRGGY-------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 131 ~~~~~~~~~~~~~-~~~--~~~~~-------------~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
...+......... ... ..... ...++-+||+||++.. . .++..+....+|+||..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCC
Confidence 1112111111000 000 00000 0013469999999752 1 12233566778888765
Q ss_pred ccccchhhhccceeEEe---cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 195 ISRIIEPLASRCAKFRF---KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 195 ~~~l~~~l~~r~~~i~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
.... ..+. ...+.+ .+++.++..+++...+... ..-.++.+..|++.|+|.+-.+.....
T Consensus 267 ~~~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~ 329 (591)
T 1z6t_A 267 KSVT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGA 329 (591)
T ss_dssp GGGG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHH
Confidence 4321 1111 223343 4899999999998776321 111246788999999999877554443
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=86.24 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHH---HhcCCCCCCCceeeeecCCcc--ch-HHHHHHH
Q 019145 64 AHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAH---QLFGPELYKSRVLELNASDDR--GI-NVVRTKI 134 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~---~l~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 134 (345)
+|++..+..|.+++..+ ....+.|+|++|+|||++|+.+++ ......+ .. .+.++.+... +. ......+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~-~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DS-IVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SE-EEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-Cc-EEEEEECCCCCCCHHHHHHHHH
Confidence 39999999999998655 234479999999999999999997 2222333 22 2223333321 12 2222222
Q ss_pred HHHHHhhh-cCCCCCCC------------CCCCC-eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccch
Q 019145 135 KTFAAVAV-GSGQRRGG------------YPCPP-YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (345)
Q Consensus 135 ~~~~~~~~-~~~~~~~~------------~~~~~-~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~ 200 (345)
..+..... ........ ...++ +-+||+|+++... .. .+... ....+|+||.... +..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~----~~~~~--~gs~ilvTTR~~~-v~~ 279 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI----RWAQE--LRLRCLVTTRDVE-ISN 279 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH----HHHHH--TTCEEEEEESBGG-GGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh----ccccc--CCCEEEEEcCCHH-HHH
Confidence 22211100 00000000 01233 6799999998732 11 11111 4566777776533 222
Q ss_pred hhhccceeEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCHHHHH
Q 019145 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 201 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~l~~~s~g~~r~~~ 254 (345)
.+......+.+.+++.++..+++.+.+-.... .-.++....|++.|+|.+-.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 22112246899999999999998776422111 1123468889999999886654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-07 Score=72.68 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=48.4
Q ss_pred CeEEEEEcCCC---CCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhhcc--ceeEEecCCCHHHHHHHHHH
Q 019145 155 PYKIIILDEAD---SMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASR--CAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 155 ~~~iliiDE~~---~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~ 225 (345)
+++++++||++ .++....+.+.+.+++. ...+|+++ +....+...+.+| +.++.+.+.+.+++...+..
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 44699999954 45677888899999873 33345555 3445566778887 67899988887777666543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-06 Score=87.08 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=109.9
Q ss_pred hCCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHh--cCCCCCCCceeeeecCCccchHHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
--|.....++|++..+..|.+.+... ....+.|+|++|+|||++|..+++.. ....+ ...++.++.........
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~- 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF-SGGVHWVSIGKQDKSGL- 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS-TTCEEEEECCSCCHHHH-
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC-CCeEEEEEECCcCchHH-
Confidence 35666678999999999999999643 23347899999999999999887653 11112 22233333333212111
Q ss_pred HHHHHHHHHhhhcCCCCCCC----------------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 131 RTKIKTFAAVAVGSGQRRGG----------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
...+................ ....++-+||+|+++.. . .++...+...+|+||..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCC
Confidence 11111111110000000000 00123569999999853 1 22333556778888865
Q ss_pred ccccchhhhccceeEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 019145 195 ISRIIEPLASRCAKFRFKP-LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (345)
Q Consensus 195 ~~~l~~~l~~r~~~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~ 259 (345)
..- ...+......+...+ ++.++..+++...+.... .-.++....|++.++|.+-.+......
T Consensus 267 ~~~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~~~~ 330 (1249)
T 3sfz_A 267 KSV-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPLVVSLIGAL 330 (1249)
T ss_dssp TTT-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHH-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHHHHHHHHHH
Confidence 432 212222334677775 999999999987763322 223456889999999988765443333
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-05 Score=87.90 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
++....+..++..+. ...+.||+|||||.+++.+|+.+ +..++.++|.+......+...+.......
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~G----- 657 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQCG----- 657 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhcC-----
Confidence 344456666666554 35789999999999999999999 78889999998877776666666654432
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh-------h--------------cCCceEEEEecCc----ccccchh
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-------T--------------YSKVTRFFFICNY----ISRIIEP 201 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le-------~--------------~~~~~~ii~~~n~----~~~l~~~ 201 (345)
...++||++.+..+++..+.+.+. + ..+.+.+++|.|+ ...+++.
T Consensus 658 ----------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~n 727 (3245)
T 3vkg_A 658 ----------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDN 727 (3245)
T ss_dssp ----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHH
T ss_pred ----------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHH
Confidence 278999999999887776555443 1 1134567777774 3568999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---h-----c-----CCCHHHHHHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---I-----S-----QGDLRRAITYLQGAARL 263 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~-----s-----~g~~r~~~~~l~~~~~~ 263 (345)
++.+|..+.+..|+.+.+.+++. -.+|+.-.......++. . | +-.+|.+...|..+...
T Consensus 728 Lk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 728 LKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999888863 35576543433333321 1 1 23488888877766543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=75.77 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCC--CH-HHH--HHHHHHHh-hcCCceEEEEecCcccccchhhhccce-eEEecCC
Q 019145 156 YKIIILDEADSM--TE-DAQ--NALRRTME-TYSKVTRFFFICNYISRIIEPLASRCA-KFRFKPL 214 (345)
Q Consensus 156 ~~iliiDE~~~l--~~-~~~--~~l~~~le-~~~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~ 214 (345)
..+|||||++.+ +. ... ..++..++ .......+|++++++..+...+++|+. .+++.++
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 469999999998 22 111 12444444 334456788999889999999999987 5677663
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-07 Score=84.49 Aligned_cols=120 Identities=23% Similarity=0.274 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH-------HHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (345)
.+.....+...+. .+.++++||||||||+++..++..+... +..+. +.++.......+.+. +..+.
T Consensus 191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl-~~ApT~~Aa~~L~e~~~~~a~Tih~ll 263 (574)
T 3e1s_A 191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVG-LCAPTGKAARRLGEVTGRTASTVHRLL 263 (574)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEE-EEESSHHHHHHHHHHHTSCEEEHHHHT
T ss_pred CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEE-EecCcHHHHHHhHhhhcccHHHHHHHH
Confidence 3455555554442 3468999999999999999999877432 23343 333332222322221 11111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.... ...........++++|||||+.+++......|++.+ +....+|++++...
T Consensus 264 ~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 264 GYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp TEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred cCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 1111 000011111235679999999999988777776655 45677888886543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-07 Score=75.55 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------cccccchhhhccce
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRIIEPLASRCA 207 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------~~~~l~~~l~~r~~ 207 (345)
+.++|+|||++.++++..+.+..+.+. ...+|+++. ++....+.+.++++
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 578999999999987777777777765 445666553 44455667777775
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-05 Score=79.56 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=82.3
Q ss_pred ccccHHHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHH-HH
Q 019145 63 VAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTF-AA 139 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~-~~~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (345)
.+|++..+..|.+++.. ...+.+.|+|++|+|||++|+.+++... ...+ ...++.++.+.......+...+... ..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~F-d~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHH-SSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhC-CCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 38999999999999876 3344579999999999999999986320 0111 2222333333322222221111111 11
Q ss_pred hhhcCCCCCC-----------------C---CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccc
Q 019145 140 VAVGSGQRRG-----------------G---YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (345)
Q Consensus 140 ~~~~~~~~~~-----------------~---~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~ 199 (345)
.......... . ....++-+||+|+++. .+..+. + +....+|+||......
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~----f---~pGSRILVTTRd~~Va- 278 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA----F---NLSCKILLTTRFKQVT- 278 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH----H---HSSCCEEEECSCSHHH-
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh----h---CCCeEEEEeccChHHH-
Confidence 0000000000 0 0123456999999987 222222 2 2556788888654422
Q ss_pred hhhhccceeEEec------CCCHHHHHHHHHHHH
Q 019145 200 EPLASRCAKFRFK------PLSEEVMSSRVLHIC 227 (345)
Q Consensus 200 ~~l~~r~~~i~~~------~~~~~~~~~~l~~~~ 227 (345)
..+.. ...+.+. +++.++..+++...+
T Consensus 279 ~~l~g-~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 279 DFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHH-HSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred HhcCC-CeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 11111 1134444 789999999987764
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=68.61 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=65.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC-CccchHHH-----------------------------H
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVV-----------------------------R 131 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------~ 131 (345)
...+++++++|.||||+|-.++..+.+.+ ....++.+... ...+...+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 34689999999999999999998875432 12222222111 11111111 1
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC------CCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA------DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~------~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r 205 (345)
..+...... ...+.+++||+||+ +.++.+ .+++++.+.+....+|+|+|.. ++.|...
T Consensus 107 ~~l~~a~~~----------l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~ 170 (196)
T 1g5t_A 107 AVWQHGKRM----------LADPLLDMVVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGC---HRDILDL 170 (196)
T ss_dssp HHHHHHHHH----------TTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSC---CHHHHHH
T ss_pred HHHHHHHHH----------HhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCC---cHHHHHh
Confidence 111111111 12246889999998 445443 4888888889999999999875 3455555
Q ss_pred ce
Q 019145 206 CA 207 (345)
Q Consensus 206 ~~ 207 (345)
.+
T Consensus 171 AD 172 (196)
T 1g5t_A 171 AD 172 (196)
T ss_dssp CS
T ss_pred Cc
Confidence 54
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-06 Score=77.86 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=61.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCC-CCCCCceeeeecCCccchHHHHHHHHHHHHhhh-c---------CCC---C-
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-G---------SGQ---R- 147 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~---~- 147 (345)
+.++++|+||||||+++..+...+... ......+. +-++.......+.+.+........ . ... .
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vl-l~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~l 243 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEE-EEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhh
Confidence 458999999999999999888776321 01122333 333333333333333322111000 0 000 0
Q ss_pred ----C-------CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 148 ----R-------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 148 ----~-------~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+ ........++|||||+++++......|+..+ +....+|++++...
T Consensus 244 l~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~Q 300 (608)
T 1w36_D 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQ 300 (608)
T ss_dssp C-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTTS
T ss_pred hccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchhh
Confidence 0 0001124679999999999877666666554 56778899886543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=65.84 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-cc----------------hHHHHHHHHHHHHhhhcCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RG----------------INVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~ 147 (345)
++++||+|+||||++..++..+.... ..++.+..... .+ .....+........
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~------- 84 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSN------- 84 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHST-------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHH-------
Confidence 68999999999999988888773221 12222211110 00 00011111111110
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
....++++|+|||++.++.+..+.+..+.+. ...+|+++.
T Consensus 85 ---~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 85 ---SFNDETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp ---TSCTTCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred ---hhCCCCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 0113467999999999988776666554442 566777764
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=69.27 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 699999999999999999987
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00016 Score=59.31 Aligned_cols=133 Identities=10% Similarity=0.098 Sum_probs=69.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhc-----CCCCC-CCC---CCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRR-GGY---PCP 154 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~---~~~ 154 (345)
++++.|+||+||||++-.++..+... +...-++.++... .... ...+......+.. ..... ... ...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~--~~~~-~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHG--RAET-EALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTT--CHHH-HHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCC--ChhH-HHHhcCccccCcceeecCCcccccccHHHHHhc
Confidence 58999999999999999999987432 2222223333211 1111 1111111000000 00000 000 012
Q ss_pred CeEEEEEcCCCCCCH------HHHHHHHHHHhhcCCceEEEEecCc------------------ccccchhhhccceeEE
Q 019145 155 PYKIIILDEADSMTE------DAQNALRRTMETYSKVTRFFFICNY------------------ISRIIEPLASRCAKFR 210 (345)
Q Consensus 155 ~~~iliiDE~~~l~~------~~~~~l~~~le~~~~~~~ii~~~n~------------------~~~l~~~l~~r~~~i~ 210 (345)
++++++|||+.+.+. .....+...++ ....++.++|- ...+++.+...+..+.
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 457999999887531 12233333332 34456666641 1346778888887777
Q ss_pred ecCCCHHHHHHHH
Q 019145 211 FKPLSEEVMSSRV 223 (345)
Q Consensus 211 ~~~~~~~~~~~~l 223 (345)
+-.++.+++...+
T Consensus 161 lvD~~p~~l~~rl 173 (228)
T 2r8r_A 161 LIDLPPRELLERL 173 (228)
T ss_dssp EBCCCHHHHHHHH
T ss_pred EecCCHHHHHHHH
Confidence 7778888877664
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.82 E-value=7.6e-05 Score=62.46 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.....+..++.. .+++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 45555555555543 249999999999999999888876
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00029 Score=55.85 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.++|.|+||+||||+++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 379999999999999999998
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.6e-05 Score=62.65 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=51.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-c-chHHHHHHHHHHHH-hhhcCCCCCCCCCCCCeEEEEE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-R-GINVVRTKIKTFAA-VAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ilii 161 (345)
.+++||.|+||||.+-.++..+... +..++.+..... + +...+.+.+..... ...............++++|+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 4799999999999988888776332 234444433221 1 11111111110000 0000000000001124789999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
||++.++++..+.+..+.+. ...+|+++
T Consensus 108 DEaQF~~~~~V~~l~~l~~~---~~~Vi~~G 135 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANR---GYRVIVAG 135 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHT---TCEEEEEE
T ss_pred ECcccCCHHHHHHHHHHhhC---CCEEEEEe
Confidence 99999988777655554432 55677776
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3.5e-05 Score=61.68 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=49.5
Q ss_pred EEEeCCCCCCHH-HHHHHHHHHhcCCCCCCCceeeeecC-CccchHHHHHHHHHHHHh-hhcCCCCCCCCCCCCeEEEEE
Q 019145 85 MLFYGPPGTGKT-TTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 85 lll~G~~G~GKT-~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ilii 161 (345)
.+++||.|+||| +|++++.+.... +..++.+.+. +.+....+.+.+...... ........ .....+.++|+|
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~-~~~~~~~DvIlI 97 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDV-AQEALGVAVIGI 97 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGG-HHHHHTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccccCccchhhhhhccCCcccceecCCHHHH-HHhccCCCEEEE
Confidence 599999999999 888988887633 2444444433 111111111111100000 00000000 000123469999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
||++.+ ++..+.+ +.+.+ ....+|+++
T Consensus 98 DEaQFf-k~~ve~~-~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 98 DEGQFF-PDIVEFC-EAMAN--AGKTVIVAA 124 (195)
T ss_dssp SSGGGC-TTHHHHH-HHHHH--TTCEEEEEE
T ss_pred Echhhh-HHHHHHH-HHHHH--CCCeEEEEe
Confidence 999999 6644444 44444 234566664
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.6e-05 Score=79.54 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
...+++|+||||||||++|.+++.+..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344699999999999999999998873
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00085 Score=56.85 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.++..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999985
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00035 Score=56.16 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEE--Ee-c-Ccccccchhhhcc--ceeEEecCCCHHHHHHHH
Q 019145 153 CPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFF--FI-C-NYISRIIEPLASR--CAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 153 ~~~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii--~~-~-n~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l 223 (345)
..+++++++||++.+ .....+.+.++++... . .++ ++ + +....+.+.+..+ +.++.+.+-+.+.+..-+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~-~-~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG-T-IILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS-C-CEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC-c-EEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 346689999997655 4567788888887642 2 232 22 1 2222455666654 458888887877776666
Q ss_pred HHH
Q 019145 224 LHI 226 (345)
Q Consensus 224 ~~~ 226 (345)
...
T Consensus 181 ~~~ 183 (189)
T 2i3b_A 181 VTC 183 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0013 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0024 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||||+||||+++.+++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00039 Score=54.72 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 665
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0047 Score=57.76 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCC----CHHHHHHHHHHHhhcC-CceEEEEecCccc--ccchhhhccce-eEEecCCCHHHHHHHHH
Q 019145 155 PYKIIILDEADSM----TEDAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 155 ~~~iliiDE~~~l----~~~~~~~l~~~le~~~-~~~~ii~~~n~~~--~l~~~l~~r~~-~i~~~~~~~~~~~~~l~ 224 (345)
++-+|||||++.+ .++..+.|.++..... ..+.+|+++..+. .+...+++.+. .+.|.-.+..+...++.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4569999999977 3445556666665543 4566777776665 67777888776 68888888888777763
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.51 E-value=7.2e-05 Score=59.88 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00029 Score=56.62 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
++++|+|||++.++++..+.+..+.+. ...+|+++
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~G 115 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAG 115 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEe
Confidence 467999999999987777666555442 45677766
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00019 Score=64.12 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 357999999999999999999886
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=58.17 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999997
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00024 Score=58.39 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=49.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC--CccchHHHHHHHHHHHHhhhcCCCCC-CCCCCCCeEEEEE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS--DDRGINVVRTKIKTFAAVAVGSGQRR-GGYPCPPYKIIIL 161 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilii 161 (345)
.+++|+.|+||||.+-..++..... +..++-+... ...+ ..+.+.+.. ........... ......++++|+|
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~D~Ryg-~~i~sr~G~-~~~a~~i~~~~di~~~~~~~dvViI 96 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKDTRYS-SSFCTHDRN-TMEALPACLLRDVAQEALGVAVIGI 96 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHHTTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecCCccch-HHHHhhcCC-eeEEEecCCHHHHHHHhccCCEEEE
Confidence 4899999999998776666665332 2233323221 1111 111111100 00000000000 0000024679999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
||++.+.. ...+.+.+.+ ....+|+++
T Consensus 97 DEaQF~~~--v~el~~~l~~--~gi~VI~~G 123 (234)
T 2orv_A 97 DEGQFFPD--IVEFCEAMAN--AGKTVIVAA 123 (234)
T ss_dssp SSGGGCTT--HHHHHHHHHH--TTCEEEEEC
T ss_pred Echhhhhh--HHHHHHHHHh--CCCEEEEEe
Confidence 99999974 6667777776 445677776
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0025 Score=52.22 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
....+++|+||+|.+. ......+..++...+....+++.|..
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 199 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 199 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEee
Confidence 3456899999999873 34445555566555545555554433
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=58.95 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+||+|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999998
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0013 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..+++.||+|+|||+++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 3689999999999987665543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00016 Score=57.01 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00015 Score=57.75 Aligned_cols=25 Identities=40% Similarity=0.681 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+|+||+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++|+|++|+||||+++.+++.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999998
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0026 Score=57.75 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++++|++|+||||++..++..+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3699999999999999999998743
|
| >1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00099 Score=50.64 Aligned_cols=122 Identities=9% Similarity=0.041 Sum_probs=76.5
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 019145 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (345)
Q Consensus 75 ~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (345)
..++.+-.+.++|+|+.-.-....+..+.+.+...++...+++.+++. .+ +...+...... +..+
T Consensus 11 ~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~---~~~l~~~~~s~----------slF~ 75 (140)
T 1jql_B 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN--TD---WNAIFSLCQAM----------SLFA 75 (140)
T ss_dssp HHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCSTT--CC---HHHHHHHHHCC----------CTTC
T ss_pred HHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecCC--CC---HHHHHHHHhcC----------CCCC
Confidence 334444445579999998778888888877664333333334444441 23 33344433332 3446
Q ss_pred CeEEEEEcCCCC-CCHHHHHHHHHHHhhcCCceEEEEecCcc------cccchhhhccceeEEe
Q 019145 155 PYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRF 211 (345)
Q Consensus 155 ~~~iliiDE~~~-l~~~~~~~l~~~le~~~~~~~ii~~~n~~------~~l~~~l~~r~~~i~~ 211 (345)
++++|+|.+.+. +.++..+.|..+++.+++.+.+|++.... .++.+++.+.+..+.+
T Consensus 76 ~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 788999998765 56677788999999888888888876322 3466666666555554
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=57.07 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|.|+||+||||+++.+++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999998
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.001 Score=60.42 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++||+|+||||++..++..+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=57.25 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|+|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999988
|
| >3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00053 Score=54.63 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
+..+++.++.++++++++|+++|+..|.+|++.|+||.+|.+.|...-..-
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 557789999999999999999999999999999999999999998776644
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00082 Score=61.10 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.++..+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999876
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=57.52 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
..+++|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999998
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0023 Score=56.68 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++++||+|+||||++++++..+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 689999999999999999988773
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00033 Score=55.26 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0003 Score=59.41 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999999998
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00028 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..+...+..+..++++|+|++|+||||++++++..+
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444455666679999999999999999999987
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00077 Score=71.62 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++++||||||||+++..++.+..
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998873
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0055 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37999999999999999999863
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00086 Score=54.73 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.....+..++.. .++++.+|+|+|||.++...+...
T Consensus 35 ~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 35 RPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444444444432 469999999999999888777654
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00085 Score=57.75 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999886
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=56.77 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999987
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0036 Score=50.67 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=15.8
Q ss_pred CcEEEeCCCCCCHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~ 101 (345)
.++++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 4699999999999976553
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00037 Score=56.60 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
.+..+|+|||++.|+++..+.+..+.+ .+..+|+.+
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 356799999999999888888877773 244556554
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0025 Score=60.68 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
|...+..+...+..+. .++++++|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence 3444444444444433 4689999999999999888877763
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00097 Score=69.99 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++|||||||||++|++++.+.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999999876
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0062 Score=52.66 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCCccccccHHHHHHHHH---------------HHHcCCCCcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 57 PKQVKDVAHQEEVVRVLTN---------------TLETANCPHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~---------------~l~~~~~~~lll~G~~G~GKT~la~-~la~~l 106 (345)
..+|+++-..+.++..+.. .+..+...++++.+|+|+|||...- .+...+
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3567777555665544432 2233334679999999999997643 444444
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0029 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++..+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999876
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=17.7
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la~~l 106 (345)
.++++.+|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 46999999999999873 3444443
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00039 Score=57.30 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999988
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00035 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00042 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|++|+||||+++.|+..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00039 Score=56.36 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....+.|.||+|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34458999999999999999999887
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00038 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+|+||+||||+++.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999988
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.001 Score=60.32 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=52.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC---------CCCCCCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ---------RRGGYPCPP 155 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 155 (345)
.++.|+||+|||+++..++.. .....+.+.. .....+++.+............ ........+
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~-~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPGR-QAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESCH-HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCH-HHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCc
Confidence 599999999999999877531 1222233322 2233333332210000000000 000001113
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.++|||||+.+++......++..+. ...+|++++..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~ 270 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQ 270 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCcc
Confidence 6799999999999888877776542 26688887543
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0005 Score=55.71 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999988
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0065 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|.||+|+||||++..++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999998874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00048 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0028 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
....++|.|++|+|||+++..+.....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445699999999999999999988653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00052 Score=54.76 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00098 Score=56.21 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.++..+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999987
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00043 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999987
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00049 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0032 Score=56.34 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=20.0
Q ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 79 TANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 79 ~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+...++++.+|+|+|||..+-..+-.
T Consensus 41 ~~~~~~~lv~a~TGsGKT~~~~~~~~~ 67 (395)
T 3pey_A 41 HNPPRNMIAQSQSGTGKTAAFSLTMLT 67 (395)
T ss_dssp CSSCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344467999999999999876554443
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0006 Score=56.75 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|+||+||||+++.|++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999998
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0004 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999883
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00068 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
....+.|.||+|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334579999999999999999999873
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0045 Score=52.93 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.....+..++.. .+.++.+|+|+|||.++..++...
T Consensus 114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 345556666666655 347889999999999998777654
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=63.72 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
-++...+++...+.... ..|+.||||||||+++-.+...+.
T Consensus 190 LN~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CCHHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHH
Confidence 36777788888776432 469999999999987777666653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00053 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.+++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00048 Score=56.82 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|.|+||+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999998
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0057 Score=54.38 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++..+
T Consensus 77 i~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHH
Confidence 7999999999999999998876
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00069 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||+|.++.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999998
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0062 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|+||+|||+++..++..+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999988763
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00053 Score=56.78 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999987
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00074 Score=55.00 Aligned_cols=22 Identities=45% Similarity=0.862 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.||||+||+|.++.|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0051 Score=54.37 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++..+
T Consensus 64 v~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998765
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0005 Score=54.70 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=18.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357999999999999999999987
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00052 Score=55.03 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+||||+++.++...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998763
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0052 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCCHHHHHHH-HHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALA-IAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~-la~~l 106 (345)
.++++.+|+|+|||..+-. +...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 4699999999999987444 44443
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00058 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999987
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0006 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00061 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999998
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00085 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 47999999999999999999886
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00075 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999999886
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.042 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++.|.||+|+||||+++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
|
| >3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0015 Score=51.48 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
..+++.++.++++++++|+++|+..|.+|++.|+||..|.+.|...-..-
T Consensus 5 d~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 5 DRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999999999999999999998776644
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0008 Score=58.51 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||++++.+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999997
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0026 Score=52.95 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=16.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la 103 (345)
.++++.+|+|+|||..+-..+
T Consensus 68 ~~~li~apTGsGKT~~~~l~~ 88 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISI 88 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 469999999999997754433
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=54.13 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCCCH----HHHHHHHHHHhhcC-CceEEEEecCccc--ccchhhhccce-eEEecCCCHHHHHHHHHH
Q 019145 155 PYKIIILDEADSMTE----DAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 155 ~~~iliiDE~~~l~~----~~~~~l~~~le~~~-~~~~ii~~~n~~~--~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~ 225 (345)
++-+++|||+..+.. +..+.+.++..... ..+.+|+++..+. .+...+++.+. .+.|.-.+..+.+.++..
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 445899999976532 22333444444333 2566777776655 46667777665 688888888888777643
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0056 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 469999999999998876655554
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.001 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999988
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00079 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0008 Score=54.83 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|+||+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999883
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=55.59 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 68 EVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 68 ~~~~~l~~~l~~-~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.+.-.+.. .....+.|+|++|+||||+++.++..+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 444444433333 012369999999999999999999988
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.002 Score=52.23 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCC---CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANC---PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~---~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.+..+.+.+..... ..+.|+|++|+||||+++.++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666666654321 237899999999999999999876
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00096 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998875
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0088 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.4
Q ss_pred CCCCcEEEeCCCCCCHHHHHHH
Q 019145 80 ANCPHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~ 101 (345)
+...++++.+|+|+|||..+-.
T Consensus 62 ~~~~~~lv~apTGsGKT~~~~~ 83 (412)
T 3fht_A 62 EPPQNLIAQSQSGTGKTAAFVL 83 (412)
T ss_dssp SSCCCEEEECCTTSCHHHHHHH
T ss_pred CCCCeEEEECCCCchHHHHHHH
Confidence 3345799999999999987543
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0044 Score=51.97 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 469999999999998644
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=52.82 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999875
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00073 Score=53.98 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||+++.++..+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999873
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0099 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.3
Q ss_pred CCCCcEEEeCCCCCCHHHHHHH
Q 019145 80 ANCPHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~ 101 (345)
+...++++.||+|+|||...-.
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHHHH
T ss_pred CCCCcEEEEcCCCCchhHHHHH
Confidence 3346799999999999987433
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0016 Score=53.09 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 68 EVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 68 ~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++.+...+... ....+.|.||+|+||||+++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555554432 222378999999999999999999873
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.001 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 347999999999999999999876
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0014 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+||+|+||||+++.++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.016 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHHHH
Confidence 359999999999998765544443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.013 Score=51.41 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+...+.-.+..+. .+++.||+|+||||++++++..+
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4555555565554 68999999999999999999876
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||+++.+++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999873
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.026 Score=46.88 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=17.5
Q ss_pred CcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~-~la~~l 106 (345)
.++++.+|+|+|||..+- .+...+
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 359999999999998643 333444
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.009 Score=49.18 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEec
Q 019145 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~ 192 (345)
....++|||||+|.+... ....+..++...+....+++.+
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 205 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEE
Confidence 345679999999976432 2333444454445455555544
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.043 Score=42.04 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999987
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0056 Score=50.13 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=16.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la 103 (345)
.++++.+|+|+|||..+...+
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 469999999999998754433
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=58.03 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..|++.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999999999987
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.015 Score=52.01 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCCceEEEEec
Q 019145 153 CPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
....++||+||+|.+.. .....+..++...+....+++.|
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 34667999999998753 44455555665555455555444
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0037 Score=56.90 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|++|+||||++..++..+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|++|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999986
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999887
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0044 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|.+|+|||+++..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 8999999999999999988654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=53.57 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=35.2
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..+.+....+.........+.++|.|++|+||||++..++..+
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33456666777777766666779999999999999999999886
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.055 Score=42.27 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=16.4
Q ss_pred cEEEeCCCCCCHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~ 101 (345)
.+.|.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999999995
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.....++|.|++|+||||+++.++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 333457999999999999999999987
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0097 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.6
Q ss_pred CcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~-~la~~l 106 (345)
.++++.+|+|+|||...- .+...+
T Consensus 62 ~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 469999999999997743 334443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0089 Score=58.67 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+...+..+ .++++.||+|+|||+++..+...
T Consensus 101 ~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 344444443 35899999999999977776544
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.023 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999977664
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=52.45 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36899999999999999998754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||+++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 347999999999999999998876
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0037 Score=52.93 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.6
Q ss_pred CcEEEeCCCCCCHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~ 101 (345)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 3699999999999986543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0017 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999986
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999988
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
|
| >2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0054 Score=48.48 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=45.0
Q ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 277 SGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
-+..+++.++.++++++++|+++|+..|.+|++.| ||..|.+.|...-..-
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999 9999999988776543
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=53.30 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecC
Q 019145 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n 193 (345)
...++||+||+|.+... ....+..++...+....+++.|.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 34679999999986432 23445556665555666665553
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0073 Score=63.55 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+|||+++..++...
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~ 58 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAA 58 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998775
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0022 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.||+|+||||+++.|....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 347999999999999999999875
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 36899999999999999999997
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0044 Score=56.11 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++++--.......+...+. .....++|+||+|+||||+++++...+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 355555444444455555543 3333479999999999999999999874
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0088 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998764
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0029 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0023 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.+....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999876
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=55.42 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 46899999999999999999987
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+.|+||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999986
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0049 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.823 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998873
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0092 Score=48.66 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=25.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
++|+||||+|||+++..++..- +..++.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~------~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLS------GKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH------CSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHc------CCcEEEEECCC
Confidence 7999999999999999998821 34555565544
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.017 Score=51.96 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCCH-HHHHHHHHHHhhcCCceEEEEec
Q 019145 154 PPYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~-~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
...++||+||+|.+.. .....+..++...+....+++.|
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 4567999999997643 23345555555555555555544
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00055 Score=55.61 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+++...+.+.+.......-.+++.|++|+|||+++..+....
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 445555555555544444458999999999999999998654
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.029 Score=52.23 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.....+..++.. .+.+++||+|+|||..+-.++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 45555555555554 469999999999999987776654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0023 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999976
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.019 Score=52.94 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
-.+.....+..++.. .++++.||+|+|||..+-.++...
T Consensus 94 l~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 345566666655544 259999999999999988887776
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0026 Score=55.70 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47999999999999999999997
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=53.34 Aligned_cols=43 Identities=37% Similarity=0.504 Sum_probs=29.8
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
+..+|+++. +..++..+ ..+. .+.|.||.|+||||+++.++..
T Consensus 3 ~~i~pk~~g----~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 3 AVIRPKTLG----QKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp -CCCCCSHH----HHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred CccccCCHh----HHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 346677763 34444443 3333 4789999999999999999876
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0039 Score=51.26 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+++....++..+.......+++.|.+|+|||+++..++....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344556666666666666789999999999999999998863
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0036 Score=52.64 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999887
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=47.96 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEec
Q 019145 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~ 192 (345)
....+++||||+|.+... ....+..++...+....+++.+
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~S 214 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 214 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEE
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEE
Confidence 345679999999986432 2334445555555555555544
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.017 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+|||+++..++..+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999988877765
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.034 Score=57.07 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHH
Q 019145 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la 103 (345)
..|...+..+...+..+.+.+++++||+|+|||.++-..+
T Consensus 606 ~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 606 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 3455666666665556766689999999999998765444
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.016 Score=47.96 Aligned_cols=18 Identities=33% Similarity=0.360 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 469999999999998644
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0096 Score=53.22 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecC
Q 019145 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n 193 (345)
.+.++||+||+|.+... ....+..++...+....+++.|.
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 201 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 201 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEE
Confidence 45689999999986432 22334444444445555555543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0088 Score=49.62 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (345)
.+.|+||+|+|||+++..++.....+. .....++.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 379999999999999999998642211 0134555565544
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.013 Score=45.70 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.054 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|+|++|+||||++..++..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998773
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=51.39 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=28.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCCc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDD 124 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~ 124 (345)
++|+||||+|||+++..++.....+. ..+..++.++....
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 69999999999999999998753221 12345666666543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.018 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.043 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|++|+||||+++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.00084 Score=54.37 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.5
Q ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 74 ~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.+.....-.+++.|++|+|||+++..+...
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33333344445899999999999999888754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.025 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++.|++|+|||+++..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998764
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0099 Score=56.98 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++....++...+. .+..++.||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4666666666653 23579999999999999988887764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0056 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0097 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.021 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0037 Score=51.17 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++. +
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-c
Confidence 479999999999999999987 5
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0043 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999999876
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.015 Score=46.51 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.021 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.018 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+|||++++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0041 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999865
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.022 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.004 Score=51.59 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|++|+||||+++.++..+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 379999999999999999999983
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0036 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0045 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999765
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.009 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998777654
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0028 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||+++..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999875
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0035 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.|+|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4799999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0068 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+|++|+||||+++.++..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.03 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
..+++.|++|+|||++++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0017 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0045 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47999999999999999999987
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.024 Score=51.90 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999888776654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0015 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0047 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999987
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=50.80 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.005 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.011 Score=50.92 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++|++|+||||++..++..+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999998873
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++ .+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-HC
Confidence 37999999999999999999 45
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0058 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999999873
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.03 Score=43.11 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0027 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0034 Score=49.42 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
-.+++.|++|+|||++++.+...-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0095 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.||+|+||||+++.+...+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998887
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.015 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
.++++.+|+|+|||..+-..+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 36999999999999876655544
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0029 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998764
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0061 Score=56.48 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l--~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++.+.+++.. +......++|+|.+|+||||++++|++.+.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 456666666654 222334589999999999999999999994
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.013 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.023 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.89 E-value=0.08 Score=40.49 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.017 Score=50.53 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=27.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (345)
++|+||||+|||+++..++..+..+. ..+..++.++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 79999999999999999998753221 1134556666554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0051 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 347999999999999999999876
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.015 Score=52.98 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.0
Q ss_pred CcEEEeCCCCCCHHHHH-HHHH
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIA 103 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la 103 (345)
.++++.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999875 4444
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.03 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.027 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.029 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0059 Score=50.19 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..+...........+.|.|++|+||||+++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 9 MGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp ----------CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444444457999999999999999999987
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.017 Score=56.89 Aligned_cols=39 Identities=38% Similarity=0.582 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++....++...+.. +..++.||||||||+++..++..+.
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45566666665542 3579999999999999988888764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0073 Score=47.60 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 457999999999999999999886
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0094 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+|||++++.+...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.007 Score=56.33 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+...+...+..+. +++|+||+|+||||+++++...+
T Consensus 247 ~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 455566666666554 59999999999999999998876
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.018 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+|||++++.+...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999998654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.02 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~ 104 (345)
.|..++..+...+..+...++++.||+|+|||..+-..+-
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4667777777777677667899999999999987755443
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0027 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.066 Score=48.65 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++++|++|+||||++..++..+..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3688899999999999999988843
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0024 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0045 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.||+|+||||+++.++..+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999865
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.019 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.006 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 36899999999999999999998
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0072 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|.||+|+||||+++.++..+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999998874
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.036 Score=43.85 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.026 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.016 Score=52.96 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+..+..+.+ ...++|+||+|+|||++++.++...
T Consensus 141 ~ID~L~pi~k---Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLLAPYIK---GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHSCEET---TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhcc---CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4455544433 3358999999999999999998765
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.036 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999998754
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.037 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=26.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++|.|+||+|||+++..++..+... +..++.++..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE 105 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 105 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC
Confidence 6999999999999999998776332 2345555544
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.69 E-value=0.016 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0085 Score=51.71 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||+++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 347999999999999999999876
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.027 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la 103 (345)
..+++++||+|+|||+.+-...
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 3579999999999999884443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0045 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=14.8
Q ss_pred cEEEeCCCCCCHHHHHHHHH-HHh
Q 019145 84 HMLFYGPPGTGKTTTALAIA-HQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la-~~l 106 (345)
.+.|+||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999999 654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.14 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
...+++.|++|+|||+++..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345899999999999999998765
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.034 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.029 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.035 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998764
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.02 Score=54.58 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
.+..+.+...+.... ...+|+|+.|.|||+++..++..+.. . +.+.++.......+.+..... .....
T Consensus 178 ~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~------~-~~vtAP~~~a~~~l~~~~~~~----i~~~~ 245 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAG------R-AIVTAPAKASTDVLAQFAGEK----FRFIA 245 (671)
T ss_dssp HHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSS------C-EEEECSSCCSCHHHHHHHGGG----CCBCC
T ss_pred HHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHh------C-cEEECCCHHHHHHHHHHhhCC----eEEeC
Confidence 344444444444322 34799999999999999999998732 2 245565555555554432211 10000
Q ss_pred CCC-CCCCCCeEEEEEcCCCCCCHHHHHHHHH
Q 019145 147 RRG-GYPCPPYKIIILDEADSMTEDAQNALRR 177 (345)
Q Consensus 147 ~~~-~~~~~~~~iliiDE~~~l~~~~~~~l~~ 177 (345)
+.. .......++|||||+-.++......|+.
T Consensus 246 Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 246 PDALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred chhhhhCcccCCEEEEEchhcCCHHHHHHHHh
Confidence 000 0012245799999999999877665554
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.019 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.032 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999997654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0084 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+|||+++..++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999998887765
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.041 Score=55.62 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=29.2
Q ss_pred chhhhhhCCCCCccc--cccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHH
Q 019145 49 QPWVEKYRPKQVKDV--AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~--~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la 103 (345)
.||.+...|.....+ .-.+.....+..+. .+ .++++.+|+|+|||.++....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~-~g--~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCID-RG--ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHH-HT--CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHH-cC--CCEEEECCCCCChHHHHHHHH
Confidence 456555544332111 12334444444433 33 369999999999999875433
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0083 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+-|.||.|+||||+++.++..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.072 Score=42.06 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.031 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.016 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998754
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.|++|+|||++++.+++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999998
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.017 Score=51.23 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
....+.|+|+||+||||++..++..+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334589999999999999999998873
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0093 Score=48.70 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++|.|++|+||||.++.+++.+..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998843
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+-|.|+||+||||.++.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.55 Score=40.30 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|.||+||||++..+...-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999998653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.1 Score=45.65 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++|.|+||+|||+++..++..+.. .+..+..++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 699999999999999999887632 23445555443
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.024 Score=55.12 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~l 102 (345)
.|.+++..+. . ..++++.||+|+|||+.+...
T Consensus 29 ~Q~~~i~~i~----~--~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 29 PQAEAVEKVF----S--GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CCHHHHHHHT----T--CSCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh----C--CCcEEEEcCCccHHHHHHHHH
Confidence 4666665532 2 347999999999999987443
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.01 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 68999999999999999998873
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.018 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||+++..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0095 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+++.|++|+|||++++.+...-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0091 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347999999999999999998655
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.052 Score=45.30 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0092 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+||+|+||||++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999997653
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0084 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|++|+||||.++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999883
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.011 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||.|+||||+++.++..+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998873
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.016 Score=51.42 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 71 ~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.-.+..+. .++|+||+|+||||++++++...
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 44444454444 68999999999999999998876
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.026 Score=50.71 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=26.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (345)
+.|+||||+|||++++.++-....+. .....++.++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 79999999999999998775442221 1234466666654
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0096 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||+++..+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999875
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.016 Score=57.00 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
++....++...+. .+..++.||||||||+++..++..+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666665543 2357999999999999887776554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 348999999999999999999876
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.||||+||||+++.++..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999998763
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.011 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||+|+||||++..++..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 68999999999999999998873
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|++|+||||+++.+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0095 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.036 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+||+|+|||++++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999876
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.012 Score=51.53 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||+++.++..+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998773
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.12 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766655443
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998765
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.21 E-value=0.024 Score=45.49 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=4.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998766
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.18 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 369999999999998766555443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=49.18 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=28.1
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHh---hcCCceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTME---TYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le---~~~~~~~ii~~~n~~~ 196 (345)
+++++++||.- .+.......+.+.+. .......+|+++....
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~ 190 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCST
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChH
Confidence 45799999964 578888888888773 2223445666665443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.019 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999876
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0086 Score=49.88 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++++|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 799999999999999887654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|++|+||||+++.+....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998765
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.056 Score=55.20 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++++||+|+|||..+...+..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHH
Confidence 46999999999999876554443
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0097 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
..+|+||.|+|||+++.++.-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 35999999999999999999877
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0096 Score=55.87 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 67 EEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 67 ~~~~~~l~~~l--~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+...++... .......+.|+|++|+||||++++|+..+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44445554433 122333579999999999999999999984
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.16 Score=46.35 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=26.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++|.|+||+|||+++..++....... +.+++.++..
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 69999999999999999988763221 3345555554
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0079 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+||+|+||||+++.+++.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.|.|++|+|||++++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.012 Score=47.98 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++.-+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.++|.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999976
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=95.02 E-value=0.09 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhh
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMET 181 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~ 181 (345)
.+.++|||||++.++......+..+++.
T Consensus 317 ~~l~~lVlDEAH~l~~~~~~~l~~Il~~ 344 (666)
T 3o8b_A 317 GAYDIIICDECHSTDSTTILGIGTVLDQ 344 (666)
T ss_dssp TSCSEEEETTTTCCSHHHHHHHHHHHHH
T ss_pred CcccEEEEccchhcCccHHHHHHHHHHh
Confidence 4578999999999987665545444443
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.014 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|++|+||||.++.++..+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999884
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.02 Score=53.76 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l--~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++...++... +......++|+|++|+||||+++.+++.+
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 355555665555 22223347999999999999999999987
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.016 Score=49.04 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=29.1
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
+++++++||.- .++......+.+++.+... ...+|+++...
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 46799999965 5788888888888876532 34566666443
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.03 Score=54.62 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=16.0
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.+++++||+|+|||..+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 579999999999998873
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998765
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.018 Score=47.03 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|++|+||||.++.+++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999998
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.015 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999997
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.024 Score=44.79 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.5
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.......+++.|++|+|||++++.+...
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3344446899999999999999999853
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.016 Score=48.52 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=28.0
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~ 195 (345)
+++++++||.- .++......+.+++.+.. ....+|+++...
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46799999954 577787788887777653 244566666443
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.02 Score=44.71 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...+++.|++|+|||++++.+...-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3458999999999999999997643
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 347899999999999999998765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.016 Score=51.21 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||.|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 68999999999999999999873
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.017 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998765
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.016 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+.|.|++|+||||.++.+++.+..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998843
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0062 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+||||+++.|++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999886
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.14 Score=43.41 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.0
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la 103 (345)
++++.|++|+||||++..+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.016 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=49.12 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.018 Score=50.98 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998765
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998755
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0075 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|.|++|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999873
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.015 Score=48.00 Aligned_cols=41 Identities=5% Similarity=0.044 Sum_probs=27.4
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHH-HhhcCCceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRT-METYSKVTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~-le~~~~~~~ii~~~n~~ 195 (345)
+++++++||.- .+.......+.+. +........+|+++...
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 190 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCCh
Confidence 56799999954 5788888888875 44433344566666543
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.067 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.3
Q ss_pred CcEEEeCCCCCCHHHH-HHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTT-ALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~l-a~~la~~ 105 (345)
.++++.||+|+|||+. +-.+...
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~ 45 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKD 45 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999986 3444443
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.016 Score=48.73 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998765
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.015 Score=48.42 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.018 Score=50.88 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998765
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.017 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|.||+||||+++.+++.+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999987
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.016 Score=49.22 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC--ceEEEEecCcc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYI 195 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~ 195 (345)
.+++++++||.- .|.......+.+++.+... ...+|+++...
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 356799999964 5788888888888876532 44566666543
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.021 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|++|+|||++++.+++.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999998
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=51.26 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=94.79 E-value=0.01 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 47999999999999999998654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=48.87 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=28.2
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+++++++||.- .+.......+.+.+.+......+|+++....
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~ 215 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 45799999964 5777777777777765544445666665443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.019 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=50.95 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998765
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.096 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=17.1
Q ss_pred CcEEEeCCCCCCHHHH-HHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTT-ALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~l-a~~la~~ 105 (345)
.++++.+|+|+|||+. +-.+...
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~ 210 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVRE 210 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999986 3334433
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.044 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||++++++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998743
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998755
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.041 Score=48.53 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.|+||+||||+.+.+...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999865
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.02 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=48.77 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~ 195 (345)
.+++++++||.- .++......+.+++.+.. ....+|+++...
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~ 198 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356799999964 577777777777776542 234456666443
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.02 Score=44.01 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.018 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.02 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+++.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999863
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.018 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=51.21 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.02 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999863
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.021 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.022 Score=52.34 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.|++|+||||+++.|+..+.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhh
Confidence 68999999999999999998773
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.019 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.021 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999754
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.22 Score=46.01 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=57.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh-hh---cCCCCCCC--------
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AV---GSGQRRGG-------- 150 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-------- 150 (345)
.+.+|.-+.|+|||..+-+++..+..... ...++-+.+. .-...+.+.+..+... .. ........
T Consensus 57 ~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~--~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi 133 (500)
T 1z63_A 57 FGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPL--SVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIIL 133 (500)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECS--TTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccH--HHHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEE
Confidence 36899999999999988888777632211 2234434332 2334444444443211 00 00000000
Q ss_pred -----------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 151 -----------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 151 -----------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
......++||+||+|.+.... ....+.+.......++.+++++..
T Consensus 134 ~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 134 TTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred eeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 012356899999999984321 123333433444556777775543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=44.41 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998853
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.058 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=17.5
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la~~ 105 (345)
.++++.||+|+|||..+ -.+...
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~ 32 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAE 32 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 46999999999999874 444443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.1 Score=47.68 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=26.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
+++.|+||+|||+++..++..+... +..+..++..
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 6999999999999999998876432 3345555443
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.027 Score=45.63 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|+.|+||||.++.+++.+
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6889999999999999999998
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.018 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999986
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.026 Score=43.12 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+|+||.|+|||+++.++.-.+.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 599999999999999999877633
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.024 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.021 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 38999999999999999998643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.016 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998765
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.36 Score=45.35 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCCHHHHHH
Q 019145 81 NCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~ 100 (345)
...++++.+|+|+|||....
T Consensus 110 ~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHH
Confidence 34579999999999997533
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.025 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.099 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|+||.|+||||+.+.++.-
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 799999999999999998643
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.019 Score=48.53 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
+++++++||.- .+.......+.+.+.+... .+|+++..
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd 184 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHE 184 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESC
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcC
Confidence 56799999954 5788888888888887655 45555544
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.023 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|.+|+||||+++.+++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999987
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.021 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999865
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.096 Score=52.25 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.1
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
++|+||.|+||||+++.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999843
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.016 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..+++.|++|+|||+++..+..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999988863
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.027 Score=44.60 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|++|+|||++++.+....
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999887754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.027 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++|++|+||||++..++..+.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.023 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.26 Score=42.50 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||+||||++..+...-
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7999999999999999997653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.024 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.32 E-value=0.024 Score=46.24 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.8
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
+++.|++|+|||++++.+..
T Consensus 18 i~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999443
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.026 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++++|.||+||||+++.+++.+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999873
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.039 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++++. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47999999999999999999 54
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.029 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....+.|.||||+||||+++.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33347999999999999999998765
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.024 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.028 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999998764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.029 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 38999999999999999998754
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.031 Score=44.93 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+.|.|+.|+||||.++.+++.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999998843
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.23 Score=48.94 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....+..++. + .++++.+|+|+|||..+-..+...
T Consensus 251 ~~Q~~~i~~~l~-~--~~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 251 SYQIELAQPAIN-G--KNALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp HHHHHHHHHHHT-T--CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-C--CCEEEEeCCCChHHHHHHHHHHHH
Confidence 344444444443 2 469999999999998766665443
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.026 Score=50.51 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=28.6
Q ss_pred CeEEEEEcCC-CCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 155 PYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~-~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+.+++++||. ..|.......+...+.+......+|+++....
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 5679999994 45677777777777776544455666665543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.029 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.22 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
.++++.+|+|+|||..+...+..
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 46999999999999987766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 345 | ||||
| d1sxjd2 | 237 | c.37.1.20 (D:26-262) Replication factor C2 {Baker' | 3e-52 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 8e-52 | |
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 1e-51 | |
| d1sxjb2 | 224 | c.37.1.20 (B:7-230) Replication factor C4 {Baker's | 9e-46 | |
| d1sxjc2 | 227 | c.37.1.20 (C:12-238) Replication factor C3 {Baker' | 2e-40 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 3e-35 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 4e-35 | |
| d2gnoa2 | 198 | c.37.1.20 (A:11-208) gamma subunit of DNA polymera | 5e-32 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 1e-25 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 2e-25 | |
| d1a5ta2 | 207 | c.37.1.20 (A:1-207) delta prime subunit of DNA pol | 4e-23 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 8e-22 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 2e-14 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 4e-13 | |
| d1sxjd1 | 91 | a.80.1.1 (D:263-353) Replication factor C2 {Baker' | 7e-08 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 8e-07 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 9e-06 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-05 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 3e-05 | |
| d1qvra3 | 315 | c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus | 5e-05 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 7e-05 | |
| d1tuea_ | 205 | c.37.1.20 (A:) Replication protein E1 helicase dom | 3e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 5e-04 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 0.001 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 0.002 | |
| d1sxjc1 | 95 | a.80.1.1 (C:239-333) Replication factor C3 {Baker' | 0.002 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 0.003 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.003 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.004 |
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 171 bits (432), Expect = 3e-52
Identities = 135/237 (56%), Positives = 168/237 (70%), Gaps = 7/237 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L+GP
Sbjct: 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 60
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEADSM
Sbjct: 61 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS VTRF ICNY++RII+PLAS+C+KFRFK L R+ I
Sbjct: 121 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 180
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
+E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 181 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 237
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 169 bits (429), Expect = 8e-52
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LF
Sbjct: 11 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 70
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 71 -GENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS--------FKIIFLDEADAL 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ +I
Sbjct: 122 TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 181
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L E L + I++GD+RRAI LQ AA L IT +++ V+
Sbjct: 182 ENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVA 230
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 169 bits (429), Expect = 1e-51
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 29/245 (11%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL 111
K+RP+ DV QE V+ L N L H LF G G GKT+ A +A L
Sbjct: 4 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 63
Query: 112 YKSR------------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
+ ++E++A+ + R +
Sbjct: 64 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR-------- 115
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K
Sbjct: 116 --FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 173
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
L E + ++ HI NEE + + AL L+ ++G LR A++ A ++++ +
Sbjct: 174 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 233
Query: 274 ISVSG 278
++ G
Sbjct: 234 SAMLG 238
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 153 bits (387), Expect = 9e-46
Identities = 101/229 (44%), Positives = 136/229 (59%), Gaps = 9/229 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 4 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 63
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 64 S-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVILDEADSMTA 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL S+CA R+ LS+E + R+L I
Sbjct: 116 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E + + L + ++GD+R+AI LQ G + + ++ +
Sbjct: 176 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-LVNADNVFKIVD 223
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 139 bits (351), Expect = 2e-40
Identities = 97/233 (41%), Positives = 136/233 (58%), Gaps = 13/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 3 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK F +K+IILDEAD+MT
Sbjct: 63 N-YSNMVLELNASDDRGIDVVRNQIKDF--------ASTRQIFSKGFKLIILDEADAMTN 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L S+C +FRF+PL +E + R+ ++
Sbjct: 114 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH 173
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSG 278
E L L A L +S GD+RR + LQ + I+ + G
Sbjct: 174 EKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 127 bits (318), Expect = 3e-35
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 30/259 (11%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----------------TANCPHMLFYGPP 91
+ W KY P ++ V + V L N L + + YGPP
Sbjct: 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
G GKTT A +A +L L + NASD R ++ +K G +
Sbjct: 62 GIGKTTAAHLVAQELGYDILEQ------NASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115
Query: 152 PCPP----YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII--EPLASR 205
+ +II+DE D M+ + + + + K + + + P
Sbjct: 116 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRV 175
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C +F+ + SR++ I E LD + L ++GD+R+ I L
Sbjct: 176 CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS-TISTTT 234
Query: 266 SSITSKDLISVSGVIPPEV 284
+I +++ +S +
Sbjct: 235 KTINHENINEISKAWEKNI 253
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 126 bits (317), Expect = 4e-35
Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 29/249 (11%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WV+KYRPK + ++H EE+ L + + + PH+L YGP GTGK T +A+ +FGP
Sbjct: 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60
Query: 110 ELYKS-----------------------RVLELNASDDRGIN--VVRTKIKTFAAVAVGS 144
+Y+ LE+ SD + V++ +K A +
Sbjct: 61 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 120
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q YK +I++EA+S+T+DAQ ALRRTME YSK R +C+ +S II P+ S
Sbjct: 121 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 180
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
+C R S+ +S+ + + E + L+ + L ++ S G+LR ++ L+ A
Sbjct: 181 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA-- 238
Query: 264 FGSSITSKD 272
+ + K
Sbjct: 239 LNNELALKS 247
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (292), Expect = 5e-32
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 19/202 (9%)
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-SDDRGIN 128
+ L +E + +L G + +L + + S VLE++ ++ GI+
Sbjct: 3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID 62
Query: 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188
+R IK F + K +I+ + + MT+ A NA + +E +
Sbjct: 63 DIR-TIKDFLNYSPELYT---------RKYVIVHDCERMTQQAANAFLKALEEPPEYAVI 112
Query: 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI-------CNEEGLNLDAEALST 241
++ + SR + E + E EA
Sbjct: 113 VLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKL 172
Query: 242 LSSISQGDLRRAITYLQGAARL 263
+ G L ++ L+ L
Sbjct: 173 GAEKLSG-LMESLKVLETEKLL 193
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (251), Expect = 1e-25
Identities = 40/219 (18%), Positives = 73/219 (33%), Gaps = 14/219 (6%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ RPK + + QE V + L+ LE A H+L GPPG GKTT A IA +L
Sbjct: 1 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
S + + D I + + + Y I + D M
Sbjct: 61 TNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAV--EELLYSAIEDFQIDIM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR---FKPLSEEVMSSRVL 224
+A +++ + F + + R + + + +
Sbjct: 119 IGKGPSA--KSIRIDIQ--PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIK 174
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ + ++ A ++ S+G R AI + +
Sbjct: 175 RAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 213
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 100 bits (250), Expect = 2e-25
Identities = 46/232 (19%), Positives = 75/232 (32%), Gaps = 45/232 (19%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
RPK + + QE + + L LE A H+L +GPPG GKTT A IAH+L
Sbjct: 4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--- 60
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ L + I A I+ +DE ++
Sbjct: 61 ------VNLRVTSGPAIEKPGDLAAILAN------------SLEEGDILFIDEIHRLSRQ 102
Query: 171 AQNALRRTMETY----------------SKVTRFFFICNYISRIIEPLASR---CAKFRF 211
A+ L ME + ++ RF I +
Sbjct: 103 AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 162
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ + E ++ V+ G+ + EA + S+G +R A +
Sbjct: 163 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDF 214
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 93.3 bits (230), Expect = 4e-23
Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 17/206 (8%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
L + + H +L PG G A++ L + +
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 125 RGINVVRTKIKTFAAVAVGSGQR-----------RGGYPCPPYKIIILDEADSMTEDAQN 173
T A + K++ + +A +T+ A N
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
AL +T+E T FF R++ L SRC P E+ + + +
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVT 181
Query: 234 LDAEALSTLSSISQGDLRRAITYLQG 259
+ +AL +S G A+ QG
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQG 207
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 92.8 bits (230), Expect = 8e-22
Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 22/203 (10%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-- 140
+ LF GP +GKTT A A+ G L +N DR + I F V
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK------ALNVNLPLDRLNFELGVAIDQFLVVFE 208
Query: 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTED------AQNALRRTMETYSKVTRFFFICN 193
G+G P ++ D++ + + + N
Sbjct: 209 DVKGTGGESRDLPS----GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN 264
Query: 194 -YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-ISQGDLR 251
Y + R + + + L L +
Sbjct: 265 EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFA 324
Query: 252 RAITYLQG-AARLFGSSITSKDL 273
++I +
Sbjct: 325 QSIQSRIVEWKERLDKEFSLSVY 347
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 70.6 bits (171), Expect = 2e-14
Identities = 32/279 (11%), Positives = 71/279 (25%), Gaps = 49/279 (17%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTLETANCP-----HMLFYGPPGTGKTT 97
+ + + + E Y P +++ + E + R+ N L + G G GKTT
Sbjct: 2 LFKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTT 61
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP----- 152
A ++ + ++ + + T + Q RG
Sbjct: 62 LAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILK 121
Query: 153 --------------CPPYKIIILDEADSMTEDAQNALRRTMETYSK------------VT 186
+ + + + + L R E +
Sbjct: 122 ALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS 181
Query: 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN--LDAEAL----- 239
+ +I + + K + + + + + L
Sbjct: 182 DVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 241
Query: 240 -STLSSISQGDLRRAITYLQGAARLF----GSSITSKDL 273
G RRAI L+ A + S++ +
Sbjct: 242 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 280
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 66.4 bits (160), Expect = 4e-13
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 37/254 (14%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTT 97
++ + Y PK++ H+E+ ++ L L + P G PGTGKT
Sbjct: 2 IVVDDSVFSPSYVPKRLP---HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTV 58
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY------ 151
T + + + + + R
Sbjct: 59 TLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH 118
Query: 152 --PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
Y ++LD+A ++ D + R + K+ F + L +
Sbjct: 119 LRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPST 178
Query: 210 --RFKPLSEEVMSSRVLHICN----------------EEGLNLDAE--ALSTLSSISQGD 249
I + E+ L + A+ T ++GD
Sbjct: 179 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 238
Query: 250 LRRAITYLQGAARL 263
R AI L +A
Sbjct: 239 ARLAIDILYRSAYA 252
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (113), Expect = 7e-08
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQV 321
+P +++ + +SGDFD K VN + G+ A+ +++Q+
Sbjct: 1 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 42
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 48.0 bits (113), Expect = 8e-07
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121
+ QE++ L T +L +G GTGK+T A+A L PE+ +++
Sbjct: 8 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL--PEIEAVEGCPVSS 65
Query: 122 SDDRGI 127
+ I
Sbjct: 66 PNVEMI 71
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 44.2 bits (103), Expect = 9e-06
Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 15/166 (9%)
Query: 62 DVAHQEEVVRVLTNTLETANCPHM----LFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117
D + + L ++ L G PG+GKT+ AI + G +
Sbjct: 8 DKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV----- 62
Query: 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR 177
++ + + ++ II + R
Sbjct: 63 -IDNDTFKQQHPNFDELV-KLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRT 120
Query: 178 TMETYSKVTR----FFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
T T + Y+ + + + R++ + +
Sbjct: 121 TDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDP 166
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 43.7 bits (103), Expect = 1e-05
Identities = 54/250 (21%), Positives = 84/250 (33%), Gaps = 53/250 (21%)
Query: 61 KDVAHQEEVVRVLTNTLETANCPH------------MLFYGPPGTGKTTTALAIAHQLFG 108
KDVA EE L +E P +L GPPG GKT A A+A +
Sbjct: 9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-- 66
Query: 109 PELYKSRVLELNASD--DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ + + SD + + V +++ A + PC I+ +DE D+
Sbjct: 67 ----RVPFITASGSDFVEMFVGVGAARVRDLFETA------KRHAPC----IVFIDEIDA 112
Query: 167 M--------------TEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPL--ASRCAK 208
+ E N L M+ + K T + N + L R +
Sbjct: 113 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR 172
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRRAITY-LQGAARL 263
+ ++L I + L+ L+ + G DL + AAR
Sbjct: 173 QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 232
Query: 264 FGSSITSKDL 273
IT KDL
Sbjct: 233 GRRKITMKDL 242
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 42.9 bits (100), Expect = 3e-05
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 26/139 (18%)
Query: 56 RPKQVKD-----VAHQEEVVRVLTNT---------LETANCP-----HMLFYGPPGTGKT 96
P+++ + Q + R + L+ ++L GP G GKT
Sbjct: 4 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 63
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
A +A P + + T +A + G
Sbjct: 64 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNG------ 117
Query: 157 KIIILDEADSMTEDAQNAL 175
I+ +DE D + + + +
Sbjct: 118 -IVFIDEIDKICKKGEYSG 135
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 42.4 bits (99), Expect = 5e-05
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 61 KDVAHQEEVVRVLTNTLETA----NCPH-----MLFYGPPGTGKTTTALAIAHQLFGPEL 111
K V Q+E +R + + + A P+ LF GP G GKT A +A LF E
Sbjct: 23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 82
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP-----PYKIIILDEADS 166
R+ + ++ + A G GG PY +I+ DE +
Sbjct: 83 AMIRIDMTEYMEKHAVS------RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEK 136
Query: 167 MTEDAQNALRRTMETY 182
D N L + ++
Sbjct: 137 AHPDVFNILLQILDDG 152
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 41.4 bits (97), Expect = 7e-05
Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 71/259 (27%)
Query: 61 KDVAHQEEVVRVLTNTLETANCPH------------MLFYGPPGTGKTTTALAIAHQLFG 108
DVA +E + +E P +L GPPGTGKT A AIA +
Sbjct: 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-- 69
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR---------RGGYPCPPYKII 159
+ F + VG G + PC II
Sbjct: 70 -----------------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC----II 108
Query: 160 ILDEADSM-------TEDAQNALRRT-------METYSKVTRFFFIC--NYISRIIEPLA 203
+DE D++ + +T M+ + I N +++P
Sbjct: 109 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-VLDPAL 167
Query: 204 SRCAKFRFK---PLSEEVMSSRVLHICN-----EEGLNLDAEALSTLSSISQGDLRRAIT 255
R +F + L + ++L + ++ A T S DL +
Sbjct: 168 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVN 226
Query: 256 Y-LQGAARLFGSSITSKDL 273
AAR ++ +
Sbjct: 227 EAALFAARGNKRVVSMVEF 245
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Score = 39.0 bits (91), Expect = 3e-04
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLT----------NTLET-------ANCPHMLFYGPPGT 93
W+ ++R ++ + +V+ L L++ NC ++F GP T
Sbjct: 8 WI-RFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNC--LVFCGPANT 64
Query: 94 GKTTTALAIAHQLFG 108
GK+ ++ H + G
Sbjct: 65 GKSYFGMSFIHFIQG 79
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQL 106
H+ GPPG GKTT + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVL 25
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 37.6 bits (86), Expect = 0.001
Identities = 20/183 (10%), Positives = 50/183 (27%), Gaps = 5/183 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-SDDRGINVVRTKIKTFAAVAVG 143
+L GPP +GKT A IA + P + ++ S+ ++ +
Sbjct: 43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 102
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
Y I ++ + A L + + + + E
Sbjct: 103 CVVVDDIERLLDYVPIGPRFSNLVL-QALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 161
Query: 204 SRC--AKFRFKPLSEEVMSSRVL-HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
++ L + N + A +++ + ++ +
Sbjct: 162 LNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 221
Query: 261 ARL 263
++
Sbjct: 222 LQM 224
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 37.3 bits (86), Expect = 0.002
Identities = 10/128 (7%), Positives = 23/128 (17%), Gaps = 40/128 (31%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
++ G +GKT A+ L + +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEAL-----------------GGKDKYATVRFGEPLSGYNT 167
Query: 144 SGQRR-------GGYPCPPYKIIILDEADSM------------TEDAQNALRRTMETYSK 184
+I++D ++ L + +
Sbjct: 168 DFNVFVDDIARAMLQHR----VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAA 223
Query: 185 VTRFFFIC 192
I
Sbjct: 224 SRGCVVIA 231
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 34.7 bits (80), Expect = 0.002
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQVTLLLFVLMVQHSRQCLYI 339
P ++ + D+ A+ +N + + G L+ + +L +Q+ +++
Sbjct: 2 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 61
Query: 340 IYSL 343
+ L
Sbjct: 62 LTKL 65
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 35.9 bits (81), Expect = 0.003
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 5/138 (3%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
L G PG+GK+T A + G + + + + + TK K +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQF 65
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ ++ ++ + + A + Y + +++
Sbjct: 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVK---- 121
Query: 205 RCAKFRFKPLSEEVMSSR 222
R +K K + +V+ S
Sbjct: 122 RNSKRGTKAVPIDVLRSM 139
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 36.6 bits (83), Expect = 0.003
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY 112
L+ P L G TGK++ ++L P +Y
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIY 59
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 35.3 bits (80), Expect = 0.004
Identities = 21/155 (13%), Positives = 40/155 (25%), Gaps = 6/155 (3%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
L G PG+GK+T A A+A+ P + ++ D G +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVP------KVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 61
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
+ + + ++ + + + IE R
Sbjct: 62 MIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR 121
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS 240
PL + S+ + E L
Sbjct: 122 GGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKD 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 100.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 100.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 100.0 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 100.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 100.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.97 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.97 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.97 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.96 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.95 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.88 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.88 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.86 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.83 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.82 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.79 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.77 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.76 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.75 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.68 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.65 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.65 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.62 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.6 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.6 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.59 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.59 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.55 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.38 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.24 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 99.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.07 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 98.99 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.59 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.56 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 98.52 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.45 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 98.24 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.07 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 98.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 98.04 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.01 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.96 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.94 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.93 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.92 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.9 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 97.9 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.88 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.85 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.81 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.79 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.79 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.73 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.72 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.7 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.65 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.65 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.64 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.55 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.52 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.51 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.51 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.5 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.48 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.47 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.47 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.45 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.44 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 97.41 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.35 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.35 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.33 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.3 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.26 | |
| d1jqlb_ | 140 | delta subunit of DNA polymerase III, N-domain {Esc | 97.22 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.2 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.19 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.13 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.11 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.11 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.1 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.09 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.99 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.98 | |
| d1jr3d1 | 127 | delta subunit {Escherichia coli [TaxId: 562]} | 96.96 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.96 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 96.93 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 96.91 | |
| d3ctda1 | 163 | Uncharacterized protein YrvN {Prochlorococcus mari | 96.87 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.86 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.84 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 96.82 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.82 | |
| d3bgea1 | 184 | Uncharacterized protein NTHI1458 {Haemophilus infl | 96.76 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.75 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 96.74 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.74 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 96.69 | |
| d1jr3a1 | 126 | gamma subunit {Escherichia coli [TaxId: 562]} | 96.68 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.62 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.61 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.61 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.61 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.59 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 96.57 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.54 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.51 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 96.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.49 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 96.49 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.43 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.42 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.41 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.4 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.38 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.36 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.36 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.32 | |
| d2qw6a1 | 88 | Uncharacterized protein EfaeDRAFT_0938 {Enterococc | 96.32 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.3 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.28 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 96.28 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.26 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.23 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.22 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.21 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.18 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 96.18 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.18 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.16 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.15 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 96.02 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.88 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 95.88 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.83 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.81 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.77 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.75 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.75 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 95.75 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.74 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.72 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.7 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.7 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.66 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.64 | |
| d2r9ga1 | 186 | Uncharacterized protein EfaeDRAFT_0938 {Enterococc | 95.6 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.58 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.56 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 95.51 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.49 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.47 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.44 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.44 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.43 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.42 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.37 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 95.37 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.34 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 95.32 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.31 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.28 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 95.27 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.24 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.21 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.21 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.2 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 95.17 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.14 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 95.14 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.14 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.13 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.09 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 95.05 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.02 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.01 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.98 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.94 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.83 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.82 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.82 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.81 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.79 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 94.74 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.71 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.7 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.7 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.64 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.64 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 94.64 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.63 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.63 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.62 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 94.61 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 94.59 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 94.58 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 94.57 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.54 | |
| d1iqpa1 | 95 | Replication factor C {Archaeon Pyrococcus furiosus | 94.5 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.49 | |
| d1sxjc1 | 95 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.49 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.45 | |
| d1sxjd1 | 91 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.34 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 94.31 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 94.31 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.3 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.22 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.16 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 94.14 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.11 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.07 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.05 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.98 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.97 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.92 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.84 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 93.84 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 93.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.71 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.69 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 93.64 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.53 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.41 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.39 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.33 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.32 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.2 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 93.2 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 93.09 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.08 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 92.96 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.92 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 92.9 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 92.87 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.76 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 92.65 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.54 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.52 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 92.49 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.35 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.32 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.25 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.04 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.98 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 91.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.54 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.41 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.26 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 91.19 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 91.19 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 90.99 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.84 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 90.48 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 90.47 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.28 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.18 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 89.96 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.91 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 89.85 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.62 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.18 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 88.62 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 88.35 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.19 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.01 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.56 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 87.3 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.79 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 86.64 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 86.47 | |
| d1tafb_ | 70 | TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta | 86.15 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 85.82 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 85.35 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 85.17 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.16 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 84.58 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 84.38 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 83.79 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 83.4 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.17 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 82.04 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 81.6 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 80.5 |
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-38 Score=263.66 Aligned_cols=222 Identities=45% Similarity=0.714 Sum_probs=195.8
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
..||++||+|++|+|++|++++++.|..|+..+..+++||+||||+|||++|+.+++++.+. .....++++++.+..+.
T Consensus 2 ~~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~-~~~~~~~~~n~~~~~~~ 80 (224)
T d1sxjb2 2 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGI 80 (224)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSH
T ss_pred CCchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcc-ccccccccccccccCCc
Confidence 36899999999999999999999999999999999999999999999999999999998543 22356888999998888
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..+...+..+...... ....+.+++|+||+|.++...++.|+..++.++..+.++++++...++.+++++||.
T Consensus 81 ~~i~~~~~~~~~~~~~-------~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~ 153 (224)
T d1sxjb2 81 DVVRNQIKHFAQKKLH-------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 153 (224)
T ss_dssp HHHHTHHHHHHHBCCC-------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred eehhhHHHHHHHhhcc-------CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH
Confidence 7777766665543221 223456799999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhC
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~ 278 (345)
.+.|++|+.+++..++.++++++++.+++++++.|++.++||+|.+++.|+.+.... +.|+.+.|.+++.
T Consensus 154 ~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~-~~i~~~~i~~~~d 223 (224)
T d1sxjb2 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH-GLVNADNVFKIVD 223 (224)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-SSBCHHHHHHHHT
T ss_pred HhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CCcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999877554 4688888877653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-37 Score=260.96 Aligned_cols=221 Identities=44% Similarity=0.771 Sum_probs=192.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.||++||+|++|+|++|++++++.|..|+..+..+++||+||||+|||++++++++++.+... ...+.+.+..+..+.+
T Consensus 2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~-~~~~~e~~~~~~~~~~ 80 (227)
T d1sxjc2 2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRGID 80 (227)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCSHH
T ss_pred CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCC-cceeEEecccccCCee
Confidence 589999999999999999999999999999999999999999999999999999999854322 2346777777777766
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcccee
Q 019145 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~ 208 (345)
.............. ....++++++|||++.++...++.|++.++..+..+.+++++|....+.+++++||..
T Consensus 81 ~~~~~~~~~~~~~~--------~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~ 152 (227)
T d1sxjc2 81 VVRNQIKDFASTRQ--------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 152 (227)
T ss_dssp HHHTHHHHHHHBCC--------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred eeecchhhcccccc--------ccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhh
Confidence 65554444333211 1234567999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhC
Q 019145 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSG 278 (345)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~ 278 (345)
+.|.+++.+++.+++.++++.+++.+++++++.|++.++||+|.+++.|+.+..... ..||.++|.+++|
T Consensus 153 i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 153 FRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226 (227)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred hccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCCeeCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998876542 5699999999876
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-37 Score=258.17 Aligned_cols=218 Identities=25% Similarity=0.385 Sum_probs=191.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-----------------
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY----------------- 112 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~----------------- 112 (345)
+++||||.+|++++|+++.++.|..++..+..++ +||+||||+|||++|+.+++.+.+....
T Consensus 2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 81 (239)
T d1njfa_ 2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 81 (239)
T ss_dssp HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHT
T ss_pred chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcC
Confidence 5799999999999999999999999999998887 7999999999999999999998654321
Q ss_pred -CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEe
Q 019145 113 -KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~ 191 (345)
...+++++..+..+.+.++..++.+... ...++++++||||+|.++.+.++.|++.+|+++.++.+|++
T Consensus 82 ~~~~~~~~~~~~~~~i~~ir~~~~~~~~~----------~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~ 151 (239)
T d1njfa_ 82 RFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 151 (239)
T ss_dssp CCTTEEEEETTCSSSHHHHHHHHHSCCCS----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred CCCeEEEecchhcCCHHHHHHHHHHHHhc----------cccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1246778877766776666554443211 22346789999999999999999999999999999999999
Q ss_pred cCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHH
Q 019145 192 CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271 (345)
Q Consensus 192 ~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~ 271 (345)
||...++.+++++||..+.|++++.+++..++..+++.++..+++++++.|+..++||+|.+++.++.+.....++|+.+
T Consensus 152 tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~~~~I~~~ 231 (239)
T d1njfa_ 152 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 231 (239)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTTSBCHH
T ss_pred cCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877777789999
Q ss_pred HHHHhhC
Q 019145 272 DLISVSG 278 (345)
Q Consensus 272 ~v~~~~~ 278 (345)
+|.+++|
T Consensus 232 ~v~~~lg 238 (239)
T d1njfa_ 232 AVSAMLG 238 (239)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9999876
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-36 Score=255.36 Aligned_cols=220 Identities=51% Similarity=0.870 Sum_probs=191.6
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
.+||++||+|.+|+|++|++++++.|..|+..+..+++||+||||+|||++|+++++++.+.. ...+++++++++..+.
T Consensus 11 ~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~-~~~~~~e~n~s~~~~~ 89 (231)
T d1iqpa2 11 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGI 89 (231)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHH
T ss_pred hchHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcc-cCCCeeEEecCcccch
Confidence 368999999999999999999999999999999999999999999999999999999985432 2457888998887666
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..++............ ......++++||++.+....++.|+.+++....++.+|+++|....+.+++.+||.
T Consensus 90 ~~~~~~~~~~~~~~~~--------~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~ 161 (231)
T d1iqpa2 90 NVIREKVKEFARTKPI--------GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161 (231)
T ss_dssp HTTHHHHHHHHHSCCG--------GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred hHHHHHHHHHHhhhhc--------cCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccc
Confidence 6555555444332211 11356799999999999999999999999988999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhh
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~ 277 (345)
.+.|.+++..++..++++.++++++.+++++++.|++.++||+|.+++.|+.++.. .+.||.++|..+.
T Consensus 162 ~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~-~~~it~e~v~~v~ 230 (231)
T d1iqpa2 162 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVA 230 (231)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHT
T ss_pred cccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCcCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999987754 5669999887764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-36 Score=256.18 Aligned_cols=229 Identities=59% Similarity=0.981 Sum_probs=194.0
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
||++||+|.+|++++|+++.++.|..|++.+..++++|+||||+|||++++++++++.+.........++++....+...
T Consensus 1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (237)
T d1sxjd2 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI 80 (237)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchH
Confidence 89999999999999999999999999999999999999999999999999999999865444456777788777666665
Q ss_pred HHHHHHHHHHhhhcCCCCC--CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 130 VRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
....+.............. ......+++++||||++.++....+.+...++..+....+|++++...++.+++.+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~ 160 (237)
T d1sxjd2 81 VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 160 (237)
T ss_dssp HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhh
Confidence 5555554433221111100 01123456799999999999999999999999998999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-----CCCCCHHHHHHhhC
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-----~~~it~~~v~~~~~ 278 (345)
.+.|++++.+++..+|..++.++++.+++++++.|++.++||+|.+++.|+.++..+ ++.||.++|++++|
T Consensus 161 ~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e~~g 236 (237)
T d1sxjd2 161 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 236 (237)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred hhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhcCCCCccCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999876543 35699999999876
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-31 Score=226.87 Aligned_cols=213 Identities=35% Similarity=0.602 Sum_probs=160.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---------------
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS--------------- 114 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~--------------- 114 (345)
|++||+|.+|++++|++++...|..++..+. .++++|+||||||||++|+++++++.+......
T Consensus 1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
T d1sxje2 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 80 (252)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence 9999999999999999999999999987664 556999999999999999999999754321110
Q ss_pred --------ceeeeecCCcc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC
Q 019145 115 --------RVLELNASDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (345)
Q Consensus 115 --------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~ 184 (345)
....+...+.. ........+......................++++|||+|.++...++.|++.++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~ 160 (252)
T d1sxje2 81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 160 (252)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence 11111111111 11111222222111110000011112234567999999999999999999999999999
Q ss_pred ceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
++.+|++||....+.+++++||..++|++|+.+++.+++..++..+++.++ +++++.|+..++||+|.+++.||.++..
T Consensus 161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240 (252)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999998864 7889999999999999999999988754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1e-30 Score=222.76 Aligned_cols=222 Identities=26% Similarity=0.421 Sum_probs=166.9
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHc-----------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~ 111 (345)
..|++||+|.+|++++|+++.++.|..|+.. +..++++|+||||||||++|+++|+++
T Consensus 2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~----- 76 (253)
T d1sxja2 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----- 76 (253)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----
T ss_pred CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHH-----
Confidence 3699999999999999999999999999853 234569999999999999999999998
Q ss_pred CCCceeeeecCCccchHHHHHHHHHHHHhhhcCC----CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-CCce
Q 019145 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVT 186 (345)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-~~~~ 186 (345)
+.+++.+++++..+...+...+........... ............++++||++.+....+..+...++.. ....
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
T d1sxja2 77 -GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTST 155 (253)
T ss_dssp -TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSS
T ss_pred -HhhhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhccccc
Confidence 678888988887666655444333222111000 0111223456779999999998766555444444321 1223
Q ss_pred EEEEecC-cccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 019145 187 RFFFICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 187 ~ii~~~n-~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~ 265 (345)
.++++++ ......+.+++||..+.|++|+.+++..++..+++++|+.+++++++.|++.++||+|.+++.|+.++.. +
T Consensus 156 ~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~~~~~~-~ 234 (253)
T d1sxja2 156 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT-T 234 (253)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHH-S
T ss_pred ccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C
Confidence 3445544 3444566789999999999999999999999999999999999999999999999999999999987754 5
Q ss_pred CCCCHHHHHHhh
Q 019145 266 SSITSKDLISVS 277 (345)
Q Consensus 266 ~~it~~~v~~~~ 277 (345)
+.++.+++.++.
T Consensus 235 ~~i~~~~~~~~~ 246 (253)
T d1sxja2 235 KTINHENINEIS 246 (253)
T ss_dssp SCCCTTHHHHHH
T ss_pred CCCCHHHHHHHh
Confidence 567777766543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.5e-28 Score=207.32 Aligned_cols=202 Identities=19% Similarity=0.269 Sum_probs=169.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
-.||++|++++||+++++.|..|+.. ...+++||+||||||||++|+++++++ +.++..+++.......
T Consensus 2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~------~~~~~~~~~~~~~~~~ 75 (238)
T d1in4a2 2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL------QTNIHVTSGPVLVKQG 75 (238)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH------TCCEEEEETTTCCSHH
T ss_pred CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhcc------CCCcccccCcccccHH
Confidence 46899999999999999999998853 346789999999999999999999999 6778888888776655
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceEEEE
Q 019145 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFF 190 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~ii~ 190 (345)
.+...+... ....++++||++.+.+..++.+...++... .++.+|+
T Consensus 76 ~~~~~~~~~----------------~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 139 (238)
T d1in4a2 76 DMAAILTSL----------------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 139 (238)
T ss_dssp HHHHHHHHC----------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred HHHHHHHhh----------------ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEE
Confidence 554443321 133599999999999999998888887532 3567888
Q ss_pred ecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh----C
Q 019145 191 ICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----G 265 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~----~ 265 (345)
+||......+++++||. .+.|++++.+++..+++..+..++..++++++..+++.++||+|.+++.++.++..+ .
T Consensus 140 at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~~~~~~~~~~~~ 219 (238)
T d1in4a2 140 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 219 (238)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999987 679999999999999999999999999999999999999999999999998765332 4
Q ss_pred CCCCHHHHHHhh
Q 019145 266 SSITSKDLISVS 277 (345)
Q Consensus 266 ~~it~~~v~~~~ 277 (345)
+.||.+.+.+++
T Consensus 220 ~~it~~~~~~al 231 (238)
T d1in4a2 220 DRINTDIVLKTM 231 (238)
T ss_dssp SSBCHHHHHHHH
T ss_pred CccCHHHHHHHH
Confidence 568888777664
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=5.1e-27 Score=197.88 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=163.6
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
.||++|+|++||+++++.+..|+.. ..++++||+||||||||++|+++++++ ..++..++++.......
T Consensus 3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~------~~~~~~~~~~~~~~~~~ 76 (239)
T d1ixsb2 3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIEKPGD 76 (239)
T ss_dssp CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHH------TCCEEEEETTTCCSHHH
T ss_pred cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCeEeccCCccccchh
Confidence 4899999999999999999988864 346789999999999999999999998 67788888877555433
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc------------------CCceEEEEe
Q 019145 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------------SKVTRFFFI 191 (345)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~------------------~~~~~ii~~ 191 (345)
....+... .....++++||++.+++..++.++..+++. .+...+|++
T Consensus 77 ~~~~~~~~---------------~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (239)
T d1ixsb2 77 LAAILANS---------------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 141 (239)
T ss_dssp HHHHHHTT---------------CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEE
T ss_pred hHHHHHhh---------------ccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEee
Confidence 33222221 123459999999999999999999888742 234556666
Q ss_pred cCcccc-cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---C-C
Q 019145 192 CNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---G-S 266 (345)
Q Consensus 192 ~n~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~-~ 266 (345)
++.... ..+.+.++|..+.|.+++.+++..++...+..+++.++++.+..+++.++||+|.+++.++.+..++ + .
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~~~~~~a~~~~~~ 221 (239)
T d1ixsb2 142 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEE 221 (239)
T ss_dssp ESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 665544 5566677788999999999999999999999999999999999999999999999999999887654 2 4
Q ss_pred CCCHHHHHHhhC
Q 019145 267 SITSKDLISVSG 278 (345)
Q Consensus 267 ~it~~~v~~~~~ 278 (345)
.||.+.+.+++.
T Consensus 222 ~It~~~~~~~l~ 233 (239)
T d1ixsb2 222 VITRERALEALA 233 (239)
T ss_dssp CBCHHHHHHHHH
T ss_pred CcCHHHHHHHHh
Confidence 588888877653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.2e-26 Score=188.81 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=148.1
Q ss_pred cccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceeeeecCC-
Q 019145 64 AHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNASD- 123 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~- 123 (345)
..+++..+.|.+.+..++.+| +||+||+|+|||++|+.+++.+.+.... ...+..+...+
T Consensus 5 Pw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (207)
T d1a5ta2 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (207)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred cccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhc
Confidence 467888999999999999888 8999999999999999999999764321 22344443322
Q ss_pred --ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchh
Q 019145 124 --DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~ 201 (345)
....+.+++....+... ...++++++||||+|.++.+.++.|++.+|+++.++.||++|+...++.++
T Consensus 85 ~~~i~~~~ir~l~~~~~~~----------~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~t 154 (207)
T d1a5ta2 85 KNTLGVDAVREVTEKLNEH----------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (207)
T ss_dssp CSSBCHHHHHHHHHHTTSC----------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred ccccccchhhHHhhhhhhc----------cccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhh
Confidence 23445566555543222 123467899999999999999999999999999999999999999999999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
++|||..+.|.+++.+++..++. +.+.++++++..+++.++||+|.+++.|+
T Consensus 155 I~SRc~~i~~~~~~~~~~~~~L~-----~~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 155 LRSRCRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred hcceeEEEecCCCCHHHHHHHHH-----HcCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 99999999999999999999984 34568999999999999999999998764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=3.1e-22 Score=167.70 Aligned_cols=199 Identities=23% Similarity=0.201 Sum_probs=137.7
Q ss_pred CCCccccccHHHHHHHHHHHH------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+|++++|.+++++.|.+.+. ...+.++||+||||||||++|+++++++ +.+++.+++++..
T Consensus 6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~ 79 (247)
T d1ixza_ 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFV 79 (247)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHH
T ss_pred CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhh
Confidence 389999999998877766541 1223459999999999999999999998 7788888875422
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC--
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS-- 183 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~-- 183 (345)
+ ...++..+..... ..+.||+|||+|.+.. ...+.|+..++...
T Consensus 80 ~~~~g~~~~~l~~~f~~a~~--------------~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~ 145 (247)
T d1ixza_ 80 EMFVGVGAARVRDLFETAKR--------------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 145 (247)
T ss_dssp HSCTTHHHHHHHHHHHHHTT--------------SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred hccccHHHHHHHHHHHHHHH--------------cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 1 1222333222211 1346999999987621 23556777777543
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQG 259 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l~~ 259 (345)
..+.+|.+||.+..+++++++ |++ .++|++|+.++..++++..+...... .+..+..+++.+.| ..+.+.+.+..
T Consensus 146 ~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~lv~~ 224 (247)
T d1ixza_ 146 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNE 224 (247)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 355667789999999999985 786 89999999999999999888655433 33347888888866 33333333333
Q ss_pred HHH---Hh-CCCCCHHHHHHhh
Q 019145 260 AAR---LF-GSSITSKDLISVS 277 (345)
Q Consensus 260 ~~~---~~-~~~it~~~v~~~~ 277 (345)
++. .. ...|+.+|+.+++
T Consensus 225 A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 225 AALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCcCHHHHHHhh
Confidence 332 22 3569999988875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=3.2e-21 Score=162.14 Aligned_cols=200 Identities=19% Similarity=0.150 Sum_probs=141.7
Q ss_pred CCCCccccccHHHHHHHHHHHH------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+|+|++|.+..++.+.+.+. ...+.++||+||||||||++|+++|+++ +.+++.+++++.
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~------~~~~~~i~~~~l 81 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDF 81 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCSS
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHc------CCCEEEEEhHHh
Confidence 4589999999999888776542 1223459999999999999999999999 778888888654
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------------HHHHHHHHHHHhhc--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY-- 182 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------------~~~~~~l~~~le~~-- 182 (345)
.+ ...++..+...... .+.||+|||+|.+. ....+.|+..++..
T Consensus 82 ~~~~~g~~~~~l~~~f~~A~~~--------------~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~ 147 (256)
T d1lv7a_ 82 VEMFVGVGASRVRDMFEQAKKA--------------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (256)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTT--------------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred hhcchhHHHHHHHHHHHHHHHc--------------CCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 32 23344444443222 34599999998752 12356677777743
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l~ 258 (345)
...+.+|.+||.+..+++++++ |++ .+.|++|+.++..++++....+..+. .+..+..+++.+.| ..+.+.+.++
T Consensus 148 ~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adi~~l~~ 226 (256)
T d1lv7a_ 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVN 226 (256)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCCCCHHHHHHHHH
Confidence 3456778899999999999986 775 89999999999999999888665543 33457888888765 4444444444
Q ss_pred HHHHHh----CCCCCHHHHHHhh
Q 019145 259 GAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~ 277 (345)
.++..+ ...|+.+|+.+++
T Consensus 227 ~A~~~a~~~~~~~i~~~d~~~Al 249 (256)
T d1lv7a_ 227 EAALFAARGNKRVVSMVEFEKAK 249 (256)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHH
Confidence 443222 2348888887764
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=7.9e-22 Score=159.62 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=117.6
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-ccchHHHHHHHHHHHHhhhcCCCC
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
.++.+.++++.+..++++|+||+|+|||++|..+++.+........+++.+.+.. ..+++.+++....+...+
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~------ 75 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP------ 75 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCc------
Confidence 4577889999999889999999999999999999998866666667888887643 357788887666544322
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCH
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~ 216 (345)
..++++|+||||+|.++...+++|++.+|+++.++.||++|+...++.++++|||..+.|++|+.
T Consensus 76 ----~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~ 140 (198)
T d2gnoa2 76 ----ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 140 (198)
T ss_dssp ----SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred ----ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCchH
Confidence 23567899999999999999999999999999999999999999999999999999999987753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.83 E-value=5.4e-19 Score=150.97 Aligned_cols=224 Identities=20% Similarity=0.230 Sum_probs=151.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+..++.+.|+|.. ++|++..++.+..++.. ..+++++|+||||||||++++.+++.+... ....++.++
T Consensus 5 ~~~~l~~~y~p~~---l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~--~~~~~~~~~ 79 (276)
T d1fnna2 5 DDSVFSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK--TTARFVYIN 79 (276)
T ss_dssp CGGGGSTTCCCSC---CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS--CCCEEEEEE
T ss_pred CcccCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcc--cCCcEEEec
Confidence 4456788898875 47888877777777643 234579999999999999999999998432 245566666
Q ss_pred cCCccchHHHHHHHHHHHHhhhcCCCCCCC-------------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh----cC
Q 019145 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGG-------------YPCPPYKIIILDEADSMTEDAQNALRRTMET----YS 183 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~----~~ 183 (345)
+................ .......... .......++++|+++.+.......+...+.. ..
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 156 (276)
T d1fnna2 80 GFIYRNFTAIIGEIARS---LNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 156 (276)
T ss_dssp TTTCCSHHHHHHHHHHH---TTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSS
T ss_pred chhhhhhhhhhhhhHHh---hhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccc
Confidence 55433322221111110 0000000000 0112446888999999987766666555542 22
Q ss_pred CceEEEEecCcc---cccchhhhccce--eEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHh---------cC
Q 019145 184 KVTRFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSI---------SQ 247 (345)
Q Consensus 184 ~~~~ii~~~n~~---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~---------s~ 247 (345)
....+|++++.. ..+.+.+.+|+. .+.|++++.+++.+++..+++..+ ..+++++++.+++. ++
T Consensus 157 ~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~ 236 (276)
T d1fnna2 157 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 236 (276)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred cceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcC
Confidence 445667776653 456777888764 689999999999999999887633 44899999999875 47
Q ss_pred CCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 248 GDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 248 g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
||+|.+++.++.++..+ ...|+.+||+++..
T Consensus 237 G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~ 271 (276)
T d1fnna2 237 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 271 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 99999999998877655 24699999988753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=2.3e-19 Score=151.63 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=121.8
Q ss_pred CCccccccHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-
Q 019145 59 QVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (345)
+|+|+.|.++.++.|.+.+.. + .+..+||+||||||||++++++++++ +.+++.+++++.
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~------~~~~~~i~~~~l~ 75 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM 75 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT------TCEEEEECHHHHT
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHh------CCeEEEEEchhhc
Confidence 689999999999888887531 2 23459999999999999999999998 778888876432
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-----------HHHHHHHHHhh--cCCce
Q 019145 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMET--YSKVT 186 (345)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-----------~~~~l~~~le~--~~~~~ 186 (345)
.+...++..+...... .+.||++||+|.+... ....++..++. ....+
T Consensus 76 ~~~~g~~~~~l~~~f~~A~~~--------------~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (258)
T d1e32a2 76 SKLAGESESNLRKAFEEAEKN--------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 141 (258)
T ss_dssp TSCTTHHHHHHHHHHHHHHHT--------------CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCE
T ss_pred ccccccHHHHHHHHHHHHHhc--------------CCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCc
Confidence 1223333333332222 3469999999998421 23445554443 23456
Q ss_pred EEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 019145 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g 248 (345)
.+|++||.+..+++++++ |++ .++|++|+.++...+++..++...+. ++..+..|++.+.|
T Consensus 142 lvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G 205 (258)
T d1e32a2 142 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 205 (258)
T ss_dssp EEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTT
T ss_pred cEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccC
Confidence 778899999999999998 786 89999999999999999887644332 22247889988866
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.79 E-value=1.2e-18 Score=149.71 Aligned_cols=229 Identities=18% Similarity=0.188 Sum_probs=139.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHH----HHHcCCCCc-----EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTN----TLETANCPH-----MLFYGPPGTGKTTTALAIAHQLFGP---ELYKS 114 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~----~l~~~~~~~-----lll~G~~G~GKT~la~~la~~l~~~---~~~~~ 114 (345)
...+|..+|+|..+. |++..++.+.. .+..+..+. ++|+||||||||++++++++.+... .....
T Consensus 5 ~~~~l~~~~~P~~~~---~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~ 81 (287)
T d1w5sa2 5 DRRVFDENYIPPELR---VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTV 81 (287)
T ss_dssp CGGGGSTTCCCSSCS---SSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ChhhcCCccCCCCCC---CHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCc
Confidence 345788899987664 55444444444 444443332 5788999999999999999987421 11223
Q ss_pred ceeeeecCCccchHHHHHHHHHHHHh-hhcCCCCC---------CCCCCCCeEEEEEcCCCCC------CHHHHHHHHHH
Q 019145 115 RVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRR---------GGYPCPPYKIIILDEADSM------TEDAQNALRRT 178 (345)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~iliiDE~~~l------~~~~~~~l~~~ 178 (345)
.+..+++................... ....+... .........++++||++.+ ..+....+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l 161 (287)
T d1w5sa2 82 KQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 161 (287)
T ss_dssp EEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred eeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHH
Confidence 44444443322222111111000000 00000000 0000124568899999876 23455555555
Q ss_pred HhhcC-----CceEEEEecCccc------ccchhhhcc-ceeEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 019145 179 METYS-----KVTRFFFICNYIS------RIIEPLASR-CAKFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSS 244 (345)
Q Consensus 179 le~~~-----~~~~ii~~~n~~~------~l~~~l~~r-~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~ 244 (345)
++... ....+|++++... ...+.+.+| +..++|++++.+++.++++.+++.... .+++++++.+++
T Consensus 162 ~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~ 241 (287)
T d1w5sa2 162 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 241 (287)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred HHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHH
Confidence 54322 3455666654432 233566665 458999999999999999999876443 489999999998
Q ss_pred hc------CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 245 IS------QGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 245 ~s------~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.+ .||+|.+++.|+.++..+ .+.||.++|++++.
T Consensus 242 ~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~ 285 (287)
T d1w5sa2 242 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285 (287)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 65 699999999998887665 35699999998764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.77 E-value=9.7e-18 Score=137.06 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=127.7
Q ss_pred CCcccc-c--cHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch--HHH-
Q 019145 59 QVKDVA-H--QEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--NVV- 130 (345)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~- 130 (345)
+|++++ | +..+...+..+....+. +.++|+||+|+||||+++++++++... +..++.++..+.... ..+
T Consensus 8 tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1l8qa2 8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLK 84 (213)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHH
T ss_pred ChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccC---ccceEEechHHHHHHHHHHHH
Confidence 788765 5 56666777777765432 349999999999999999999998432 234444444321110 000
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcC-CceEEEEecCccc----ccchhhh
Q 019145 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS-KVTRFFFICNYIS----RIIEPLA 203 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~-~~~~ii~~~n~~~----~l~~~l~ 203 (345)
......+.... ...++|+|||+|.+. +..+..|+.+++... ....+|++++.+. ...+.+.
T Consensus 85 ~~~~~~~~~~~------------~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~ 152 (213)
T d1l8qa2 85 KGTINEFRNMY------------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 152 (213)
T ss_dssp HTCHHHHHHHH------------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred ccchhhHHHHH------------hhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHH
Confidence 00011111111 123599999999985 466677777777533 4556777775432 2567888
Q ss_pred ccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 204 SRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 204 ~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
+|+. ++.++ |+.++..+++++.+...|+.++++++++|++++ .|+|.+...+..++
T Consensus 153 SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~ 211 (213)
T d1l8qa2 153 SRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIK 211 (213)
T ss_dssp HHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHH
T ss_pred HHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHhh
Confidence 8875 77775 678889999999999999999999999999998 58998888777664
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=5.6e-17 Score=135.70 Aligned_cols=216 Identities=16% Similarity=0.154 Sum_probs=156.8
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc-
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD- 124 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~- 124 (345)
.++++-+...++-++|+++.+..+...+.....+|++|+||||+|||++++.+++.+... ...+..++.++...-
T Consensus 7 dlt~~a~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~li 86 (268)
T d1r6bx2 7 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 86 (268)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred HHHHHHHcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHh
Confidence 355566666777899999999999999998888999999999999999999999987532 234556777775432
Q ss_pred ---cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEEEec
Q 019145 125 ---RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
.....+.+.+......... .+..++||||+|.+. .+..+.|..++.. +...+|.+|
T Consensus 87 ag~~~~g~~e~r~~~i~~~~~~----------~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r--g~i~vIgat 154 (268)
T d1r6bx2 87 AGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST 154 (268)
T ss_dssp CCCCCSSCHHHHHHHHHHHHSS----------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEE
T ss_pred ccCccchhHHHHHHHHHHHhhc----------cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC--CCCeEEEeC
Confidence 1123344444433333211 234589999999982 2445666667764 567777776
Q ss_pred Ccc-----cccchhhhccceeEEecCCCHHHHHHHHHHHH----HHhCCCCCHHHHHHHHHhc------CCCHHHHHHHH
Q 019145 193 NYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC----NEEGLNLDAEALSTLSSIS------QGDLRRAITYL 257 (345)
Q Consensus 193 n~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~----~~~~~~i~~~~~~~l~~~s------~g~~r~~~~~l 257 (345)
+.. ..-+++|.+||..+.+.+|+.++...+++... ..+++.++++++..+++.+ ..-|.+++..+
T Consensus 155 T~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdll 234 (268)
T d1r6bx2 155 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 234 (268)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHH
T ss_pred CHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence 432 34578899999999999999999999998744 4578999999999998876 45699999999
Q ss_pred HHHHHHh--------CCCCCHHHHHHhh
Q 019145 258 QGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~--------~~~it~~~v~~~~ 277 (345)
+.++..+ ...|+.+||+.++
T Consensus 235 Dea~a~~~~~~~~~~~~~i~~~di~~~i 262 (268)
T d1r6bx2 235 DEAGARARLMPVSKRKKTVNVADIESVV 262 (268)
T ss_dssp HHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHhhccccCcccCCHHHHHHHH
Confidence 8887654 1237777766554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=1.1e-18 Score=147.82 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=115.1
Q ss_pred CC-CCccccccHHHHHHHHHHHH----c-------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 57 PK-QVKDVAHQEEVVRVLTNTLE----T-------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 57 p~-~~~~~~g~~~~~~~l~~~l~----~-------~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
|. +|+++.|.+++++.|.+.+. . + ...++||+||||||||++++++|+++ +.+++.++++
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~------~~~~~~~~~~ 75 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGP 75 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT------TCEEEEECHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHh------CCcEEEEEHH
Confidence 44 89999997777666655442 1 2 23459999999999999999999999 7788888764
Q ss_pred Cc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHHHHHHHHhhc
Q 019145 123 DD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETY 182 (345)
Q Consensus 123 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~~l~~~le~~ 182 (345)
+. .....++..+..+... .+.+|+|||+|.+... ..+.|+..++..
T Consensus 76 ~l~~~~~~~~~~~l~~~f~~A~~~--------------~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 141 (265)
T d1r7ra3 76 ELLTMWFGESEANVREIFDKARQA--------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 141 (265)
T ss_dssp HHHTSCTTTHHHHHHHHHHHHHHT--------------CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--
T ss_pred HhhhccccchHHHHHHHHHHHHhc--------------CCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCc
Confidence 32 1223333444433222 3369999999987421 235666666543
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG 248 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g 248 (345)
..++.+|.+||.++.+++++++ |+. .++|++|+.++..++++..++.. ....+ .+..+++.+.|
T Consensus 142 ~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~g 211 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNG 211 (265)
T ss_dssp ----CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC------CCCCHHHHHHHCS
T ss_pred CCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccC--CchhhhhHHHHHhcCCC
Confidence 2346788889999999999986 676 89999999999999998776532 22222 35666666543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.68 E-value=5.5e-16 Score=129.36 Aligned_cols=211 Identities=18% Similarity=0.176 Sum_probs=141.3
Q ss_pred cccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
++||+...++.+.+.+..- ...+++|+||+|||||++|++++... ......++.+++............+.. ..
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s---~~~~~~~~~~~~~~~~~~~~~~~lfg~-~~ 76 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS---DRSKEPFVALNVASIPRDIFEAELFGY-EK 76 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS---TTTTSCEEEEETTTSCHHHHHHHHHCB-CT
T ss_pred CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc---CCcccccccchhhhhhhcccHHHhcCc-cc
Confidence 5789888887777777652 33459999999999999999998754 233557777887664332222111110 00
Q ss_pred hhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------ccc
Q 019145 140 VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (345)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~l~ 199 (345)
...... ...+....++.+.|+|||++.++...+..|++++++.. .++++|++++... .+.
T Consensus 77 ~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~ 156 (247)
T d1ny5a2 77 GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFR 156 (247)
T ss_dssp TSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred CCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCc
Confidence 000000 00011112345699999999999999999999997522 2467888876432 355
Q ss_pred hhhhccce--eEEecCCC--HHHHHHHHHHHH----HHhCCC---CCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-CC
Q 019145 200 EPLASRCA--KFRFKPLS--EEVMSSRVLHIC----NEEGLN---LDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~----~~~~~~---i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~~ 266 (345)
+.+..|+. .+.++|+. .+++..++..++ ...+.+ +++++++.|..+. .||++.+.+.++.++..+ +.
T Consensus 157 ~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~~~~ 236 (247)
T d1ny5a2 157 EDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGK 236 (247)
T ss_dssp HHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 66777765 57777774 366765555544 444433 7899999999886 899999999999998777 55
Q ss_pred CCCHHHHHHh
Q 019145 267 SITSKDLISV 276 (345)
Q Consensus 267 ~it~~~v~~~ 276 (345)
.|+.+|+-.+
T Consensus 237 ~I~~~dl~~l 246 (247)
T d1ny5a2 237 FIDRGELSCL 246 (247)
T ss_dssp EECHHHHHHH
T ss_pred eECHHHcccc
Confidence 6999988764
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=6.1e-15 Score=130.11 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=140.5
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC----CCCCCCceeeeecCCccc
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELNASDDRG 126 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~~~~ 126 (345)
+++.-+...++-++|++..+..+...+.....+|++|.||||+|||+++..+|+.+.. ..+.+..++.++...-..
T Consensus 12 l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 91 (387)
T d1qvra2 12 LTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA 91 (387)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhc
Confidence 4455556677779999999999999999999999999999999999999999988743 234566788887754322
Q ss_pred h----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 127 I----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 127 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
. ..+.+.+......... ....-||||||+|.+- .+..+.|..++.. +...+|.+|+.
T Consensus 92 g~~~~g~~e~r~~~i~~~~~~---------~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r--g~~~~I~~tT~ 160 (387)
T d1qvra2 92 GAKYRGEFEERLKAVIQEVVQ---------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTL 160 (387)
T ss_dssp ------CHHHHHHHHHHHHHT---------TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECH
T ss_pred ccCcchhHHHHHHHHHHHhcc---------CCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC--CCcceeeecCH
Confidence 1 2233333332222111 0123579999999983 2456788888876 45567766642
Q ss_pred c----cccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhc------CCCHHHHHHHHHHH
Q 019145 195 I----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSIS------QGDLRRAITYLQGA 260 (345)
Q Consensus 195 ~----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s------~g~~r~~~~~l~~~ 260 (345)
. ..-+++|.+||+.+.+.+|+.++...+|+.... .+++.++++++..+++.| ..-|.+++..|+.+
T Consensus 161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a 240 (387)
T d1qvra2 161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 240 (387)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHH
Confidence 1 124788999999999999999999999887554 468999999999999876 46899999999988
Q ss_pred HHHh
Q 019145 261 ARLF 264 (345)
Q Consensus 261 ~~~~ 264 (345)
+...
T Consensus 241 ~a~~ 244 (387)
T d1qvra2 241 AARL 244 (387)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.65 E-value=1.6e-15 Score=126.49 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=98.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc---h----HHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---I----NVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
++||+||||||||++|+++|+++ +.+++.+++++... . ..++..+..... ..+
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~--------------~~p 101 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK--------------SQL 101 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHT--------------SSE
T ss_pred EEEEECcCCCCHHHHHHHHhhcc------cccccccccccccccccccchhhhhhhhhhhhhh--------------ccc
Confidence 49999999999999999999998 77888888754211 1 122333332221 235
Q ss_pred EEEEEcCCCCC----------CHHHHHHHHHHHhhcCC---ceEEEEecCcccccchh-hhccce-eEEecCCC-HHHHH
Q 019145 157 KIIILDEADSM----------TEDAQNALRRTMETYSK---VTRFFFICNYISRIIEP-LASRCA-KFRFKPLS-EEVMS 220 (345)
Q Consensus 157 ~iliiDE~~~l----------~~~~~~~l~~~le~~~~---~~~ii~~~n~~~~l~~~-l~~r~~-~i~~~~~~-~~~~~ 220 (345)
.||+|||+|.+ .....+.|+..++.... .+.+|.+||.++.+++. +.+||. .++++.++ .+++.
T Consensus 102 ~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il 181 (246)
T d1d2na_ 102 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLL 181 (246)
T ss_dssp EEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred ceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHH
Confidence 69999999865 23456677777775432 45677788988877664 667776 57775443 44555
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHH
Q 019145 221 SRVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQ 258 (345)
Q Consensus 221 ~~l~~~~~~~~~~i~~~~~~~l~~~s~g-----~~r~~~~~l~ 258 (345)
+++.. . ..+++.....+++.+.| .++.++..++
T Consensus 182 ~~l~~----~-~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie 219 (246)
T d1d2na_ 182 EALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIE 219 (246)
T ss_dssp HHHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred HHHHh----c-cCCChHHHHHHHHHcCCCccchhHHHHHHHHH
Confidence 44432 2 23667777777777655 3565555443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=6.5e-15 Score=127.34 Aligned_cols=166 Identities=21% Similarity=0.274 Sum_probs=118.8
Q ss_pred cccccHHHHHHHHHHHHc--------CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH----
Q 019145 62 DVAHQEEVVRVLTNTLET--------ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN---- 128 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--------~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---- 128 (345)
.++||+++++.+...+.. .++ .+++|+||||||||.+|+.+|+.+ ..+++.++++......
T Consensus 23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l------~~~~i~~d~s~~~~~~~~~~ 96 (315)
T d1r6bx3 23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVSR 96 (315)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCSS
T ss_pred eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc------cCCeeEeccccccchhhhhh
Confidence 588999999988877742 111 247999999999999999999998 4567777764321110
Q ss_pred -----------HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------Cce
Q 019145 129 -----------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVT 186 (345)
Q Consensus 129 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~ 186 (345)
.....+..... ..++.++++||++..+++.++.|++++++.. .++
T Consensus 97 l~g~~~gy~g~~~~~~l~~~~~-------------~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~ 163 (315)
T d1r6bx3 97 LIGAPPGYVGFDQGGLLTDAVI-------------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNV 163 (315)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHH-------------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred hcccCCCccccccCChhhHHHH-------------hCccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccce
Confidence 00011111111 1356799999999999999999999998532 456
Q ss_pred EEEEecCcc-------------------------cccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhC--
Q 019145 187 RFFFICNYI-------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEG-- 231 (345)
Q Consensus 187 ~ii~~~n~~-------------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~-- 231 (345)
.+|+|+|-. ..+.|.+..|++ ++.|.|++.+++..++...+. ..+
T Consensus 164 iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~ 243 (315)
T d1r6bx3 164 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 243 (315)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 788887622 126778888987 899999999999888766543 223
Q ss_pred CCCCHHHHHHHHHhc
Q 019145 232 LNLDAEALSTLSSIS 246 (345)
Q Consensus 232 ~~i~~~~~~~l~~~s 246 (345)
+.++++++..|++.+
T Consensus 244 l~~~~~a~~~l~~~~ 258 (315)
T d1r6bx3 244 LEVSQEARNWLAEKG 258 (315)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhC
Confidence 347999999998764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=1.1e-14 Score=125.69 Aligned_cols=182 Identities=24% Similarity=0.346 Sum_probs=120.6
Q ss_pred cccccHHHHHHHHHHHHc-------CCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET-------ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-------~~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.++||+++++.+...+.. ...| .++|+||+|+|||.+|+.+|+.+++. ..+++.++++..........
T Consensus 24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~---~~~~~~~~~~~~~~~~~~~~ 100 (315)
T d1qvra3 24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVSR 100 (315)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGGGGG
T ss_pred eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCC---CcceEEEeccccccchhhhh
Confidence 478999999888776643 1112 36899999999999999999998543 34677777655433222111
Q ss_pred HHHHHHHhhh--cCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc----
Q 019145 133 KIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI---- 195 (345)
Q Consensus 133 ~~~~~~~~~~--~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~---- 195 (345)
.+..-..... ..+.........++.||++||+|+.+++.++.|++++++.. .++.+|+++|-.
T Consensus 101 L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i 180 (315)
T d1qvra3 101 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLI 180 (315)
T ss_dssp C--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHH
T ss_pred hcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHH
Confidence 1100000000 00000000001346799999999999999999999998531 356788888631
Q ss_pred ----------------------cccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhC--CCCCHHHHHHHH
Q 019145 196 ----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEG--LNLDAEALSTLS 243 (345)
Q Consensus 196 ----------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~~~~l~ 243 (345)
..+.+.+..|++ ++.|.|++.+++..++...+. ..+ +.+++++++.|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~ 260 (315)
T d1qvra3 181 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLA 260 (315)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred hhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 236788889998 678999999999988876443 233 347999999999
Q ss_pred Hhc
Q 019145 244 SIS 246 (345)
Q Consensus 244 ~~s 246 (345)
+.+
T Consensus 261 ~~~ 263 (315)
T d1qvra3 261 ERG 263 (315)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=3e-15 Score=129.37 Aligned_cols=148 Identities=19% Similarity=0.273 Sum_probs=98.8
Q ss_pred cccccHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 62 DVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
.++||+++++.+...+.. ..+.++||+||||||||.+|+++|+.+ ..+++.++++.....
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~------~~~~~~i~~s~~~~~ 88 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKFTEV 88 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGGSSC
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcc------ccchhcccccccccc
Confidence 368999999988876631 134679999999999999999999998 567777777543211
Q ss_pred --------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----
Q 019145 128 --------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYS---- 183 (345)
Q Consensus 128 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~~~---- 183 (345)
..+...+......... ...+.||++||+|.+.+ ..++.|+..++...
T Consensus 89 ~~~~~~~~~~~~~~f~~a~~~~~~---------~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~ 159 (309)
T d1ofha_ 89 GYVGKEVDSIIRDLTDSAGGAIDA---------VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK 159 (309)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHH---------HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEET
T ss_pred eeEeeeccccccccchhhhccccc---------ccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecC
Confidence 1122221111000000 00235999999999853 24566888887421
Q ss_pred ------CceEEEEe----cCcccccchhhhccce-eEEecCCCHHHHHHHHH
Q 019145 184 ------KVTRFFFI----CNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 184 ------~~~~ii~~----~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~ 224 (345)
.++.+|++ .+.+..+.+++..|+. ++.|.+|+..++.+++.
T Consensus 160 ~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~ 211 (309)
T d1ofha_ 160 HGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 211 (309)
T ss_dssp TEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence 12334443 2566778899999987 78999999999988864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.59 E-value=1.7e-14 Score=126.65 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=118.9
Q ss_pred cccccHHHHHHHHHHHH------------------------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 019145 62 DVAHQEEVVRVLTNTLE------------------------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~------------------------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~ 111 (345)
.++||+++++.+..+++ ...+.++||.||+|||||.+|+++|+.+
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~----- 92 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 92 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhc-----
Confidence 38899999988876663 2245679999999999999999999987
Q ss_pred CCCceeeeecCCccchH----HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCC--------------CCHHHHH
Q 019145 112 YKSRVLELNASDDRGIN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS--------------MTEDAQN 173 (345)
Q Consensus 112 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~--------------l~~~~~~ 173 (345)
+.+++.++++...... .....+..+...+... ....+++++++||++. ..++.++
T Consensus 93 -~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~------v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~ 165 (364)
T d1um8a_ 93 -DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN------VQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 165 (364)
T ss_dssp -TCCEEEEEGGGCC--------CTHHHHHHHHHTTTC------HHHHTTSEEEEETGGGC--------------CHHHHH
T ss_pred -ccceeehhhhhcccchhhHhhhccchhhhhhhchhH------HHHhhcccchhhhhhhhccccccccccccccchHHHH
Confidence 6677777775433211 1122233222221110 1123456999999998 4557899
Q ss_pred HHHHHHhhcC-------------CceEEEEecCc----------------------------------------------
Q 019145 174 ALRRTMETYS-------------KVTRFFFICNY---------------------------------------------- 194 (345)
Q Consensus 174 ~l~~~le~~~-------------~~~~ii~~~n~---------------------------------------------- 194 (345)
.|++.++... .+..++.++|-
T Consensus 166 ~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (364)
T d1um8a_ 166 ALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 245 (364)
T ss_dssp HHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHH
T ss_pred hhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHH
Confidence 9999999421 12222322211
Q ss_pred ---ccccchhhhccce-eEEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc---CCCHHHHH
Q 019145 195 ---ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS---QGDLRRAI 254 (345)
Q Consensus 195 ---~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s---~g~~r~~~ 254 (345)
...+.|.+..|+. ++.|.+++.+++.+++.. .++.+|+. +++++++.|++.+ +--.|.+-
T Consensus 246 ~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~ 325 (364)
T d1um8a_ 246 DLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLR 325 (364)
T ss_dssp HHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHH
T ss_pred HHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHH
Confidence 0125677888887 789999999999998853 23345654 7899999999864 22244444
Q ss_pred HHHHHH
Q 019145 255 TYLQGA 260 (345)
Q Consensus 255 ~~l~~~ 260 (345)
..++..
T Consensus 326 riie~~ 331 (364)
T d1um8a_ 326 AIIEDF 331 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.59 E-value=1.3e-14 Score=127.12 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=123.9
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-------CC----------CCC---------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GP----------ELY--------- 112 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-------~~----------~~~--------- 112 (345)
.|.+++||+.++..+.-.....+..|+||.||||||||++|+.++.-+- +. ...
T Consensus 5 ~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (333)
T d1g8pa_ 5 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIR 84 (333)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEE
T ss_pred ChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCccc
Confidence 7999999999988776555433345799999999999999999998651 00 000
Q ss_pred -CCceeeeecCCccchHHHHHHHHHHHHh-hhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------
Q 019145 113 -KSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (345)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------- 183 (345)
..++...... .+...+...+...... .......++....+..+|+++||++.++++.++.|++.|++..
T Consensus 85 ~~~~~~~~~~~--~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g 162 (333)
T d1g8pa_ 85 KPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDG 162 (333)
T ss_dssp ECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTT
T ss_pred ccCceeeccCC--CCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEecccC
Confidence 0011111111 1111111000000000 0000011111222345799999999999999999999998642
Q ss_pred ------CceEEEEecCcc-cccchhhhccce-eEEecCCCH-HHHHHHHHHH----------------------------
Q 019145 184 ------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLSE-EVMSSRVLHI---------------------------- 226 (345)
Q Consensus 184 ------~~~~ii~~~n~~-~~l~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~---------------------------- 226 (345)
..+.++.++|+. ..+.+++.+|+. .+.+..+.. .+...++...
T Consensus 163 ~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (333)
T d1g8pa_ 163 LSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEA 242 (333)
T ss_dssp CCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666654 458899999998 466665532 2222211110
Q ss_pred -HHHhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 227 -CNEEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 227 -~~~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
..-..+.++++....+.... +. .+|.....++-+...+ ...|+.+||.+++
T Consensus 243 ~~~l~~v~~~~~~~~~~~~~~~~~~~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~ 302 (333)
T d1g8pa_ 243 RERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 302 (333)
T ss_dssp HHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred hhcccceecCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 01123556666666665443 22 6787777665443333 3569999998753
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.4e-14 Score=114.31 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=116.5
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC----CCCCCCceeeeecCC---
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELNASD--- 123 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~--- 123 (345)
++++-+...++-++|+++.+..+...+.....+|++|+||||+|||++++.+|+.+.. ....+..++.++...
T Consensus 12 lt~~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiA 91 (195)
T d1jbka_ 12 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhc
Confidence 4555666777789999999999999999988899999999999999999999998753 234567788877532
Q ss_pred -ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEecCc
Q 019145 124 -DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
......+.+.+......... ....-|++|||++.+-. +..+.|..+++. +...+|.+|+.
T Consensus 92 g~~~rG~~E~rl~~il~e~~~---------~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT~ 160 (195)
T d1jbka_ 92 GAKYRGEFEERLKGVLNDLAK---------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTL 160 (195)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH---------STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECH
T ss_pred cCCccHHHHHHHHHHHHHHhc---------CCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCCH
Confidence 12223344444433322111 01235899999998832 234788888886 55667776643
Q ss_pred c-----cccchhhhccceeEEecCCCHHHHHHHH
Q 019145 195 I-----SRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 195 ~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
. ..-.++|.+||..+.+.+|+.++...+|
T Consensus 161 eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 161 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence 2 2357899999999999999999887654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.38 E-value=2.4e-14 Score=125.52 Aligned_cols=174 Identities=17% Similarity=0.037 Sum_probs=97.2
Q ss_pred HHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 72 VLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 72 ~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
.++.++.... .+.++|+||||||||++|+++++.+ +..++.+++++..+...+........... ........
T Consensus 143 ~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~------~~~~i~in~s~~rs~~~l~~~~~~~~~l~-d~~~~~~~ 215 (362)
T d1svma_ 143 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVF-EDVKGTGG 215 (362)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEE-TTCCCSTT
T ss_pred HHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEECcchhhHHHHHhHHHHHHHHH-HHHHHhhh
Confidence 3444444332 2358999999999999999999999 77899999887655433222111100000 00000000
Q ss_pred CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEecCcccccchhhhccce--eEEecCC
Q 019145 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNYISRIIEPLASRCA--KFRFKPL 214 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~--------------~~~~ii~~~n~~~~l~~~l~~r~~--~i~~~~~ 214 (345)
.......++++||+|.+ ...++... ....+|+|||...... ....|+. ++.+.|+
T Consensus 216 ~~~~~~~~~~~DeiD~l--------~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~-~r~~Rf~~~i~~~~~~ 286 (362)
T d1svma_ 216 ESRDLPSGQGINNLDNL--------RDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPK-TLQARFVKQIDFRPKD 286 (362)
T ss_dssp TTTTCCCCSHHHHHHTT--------HHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCH-HHHTTEEEEEECCCCH
T ss_pred hccCCCCeEEEehHhhc--------ccccCCcchhhhhhhhhchhhhccCCceeecccccccc-cccccCceEEeecCCC
Confidence 01112245556665544 23332211 1124788888543211 1122544 3444444
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHH-HHhcCCCHHHHHHHHHHHH
Q 019145 215 SEEVMSSRVLHICNEEGLNLDAEALSTL-SSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l-~~~s~g~~r~~~~~l~~~~ 261 (345)
.......++...++.+.+..+.+.+..+ ...+++|++.+++.+...+
T Consensus 287 ~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~~~ 334 (362)
T d1svma_ 287 YLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEW 334 (362)
T ss_dssp HHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4556567777888888888877776554 4667888998888765433
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.24 E-value=1e-11 Score=105.74 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=76.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
++||+||||||||.+|+++|.++.. ..+++.+++++.. +...++..+..... ..
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~~----~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~----------------~~ 184 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALGG----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ----------------HR 184 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHHT----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH----------------CS
T ss_pred eEEEECCCCccHHHHHHHHHHHhcC----CCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh----------------cc
Confidence 3677999999999999999999832 3456777776532 23445555554321 13
Q ss_pred EEEEcCCCCCCH------------HHHHHHHHHHhhc--CCceEEEEecCcc---cccchhhhc--cce-eEEecCCCHH
Q 019145 158 IIILDEADSMTE------------DAQNALRRTMETY--SKVTRFFFICNYI---SRIIEPLAS--RCA-KFRFKPLSEE 217 (345)
Q Consensus 158 iliiDE~~~l~~------------~~~~~l~~~le~~--~~~~~ii~~~n~~---~~l~~~l~~--r~~-~i~~~~~~~~ 217 (345)
||||||+|.+.. ...+.|+.-++.. ...+.+|.+||+. ..+++++.+ |+. .+.+.+|+.+
T Consensus 185 ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~ 264 (321)
T d1w44a_ 185 VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVD 264 (321)
T ss_dssp EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSST
T ss_pred EEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChH
Confidence 999999999843 2345566666532 2457778888842 223333322 444 6777788777
Q ss_pred HHHHHHH
Q 019145 218 VMSSRVL 224 (345)
Q Consensus 218 ~~~~~l~ 224 (345)
...+++.
T Consensus 265 ~r~~il~ 271 (321)
T d1w44a_ 265 GEWQVLT 271 (321)
T ss_dssp TEEEEEE
T ss_pred HHHHHHH
Confidence 6665553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.23 E-value=1.3e-10 Score=98.15 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=109.7
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec--CC---ccchHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA--SD---DRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~--~~---~~~~~~~~~~ 133 (345)
.-++++|+++.+..+.+. ..++++|+||+|+|||++++.+++.+ +..+..+++ .. ......+...
T Consensus 10 ~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (283)
T d2fnaa2 10 NRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINEL------NLPYIYLDLRKFEERNYISYKDFLLE 79 (283)
T ss_dssp SGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHH------TCCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred ChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHC------CCCeEEEEeccccccccccHHHHHHH
Confidence 457899999998887653 34568999999999999999999987 223332322 11 1111211111
Q ss_pred HHHHHHhhh----------cCCC-------------CC--CC----------CCCCCeEEEEEcCCCCCCH----HHHHH
Q 019145 134 IKTFAAVAV----------GSGQ-------------RR--GG----------YPCPPYKIIILDEADSMTE----DAQNA 174 (345)
Q Consensus 134 ~~~~~~~~~----------~~~~-------------~~--~~----------~~~~~~~iliiDE~~~l~~----~~~~~ 174 (345)
+........ .... .. .. ....+..++++||++.+.. .....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~~~~~ 159 (283)
T d2fnaa2 80 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 159 (283)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHHHHHH
Confidence 111100000 0000 00 00 0123456899999987643 22334
Q ss_pred HHHHHhhcCCceEEEEecCccccc----------chhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019145 175 LRRTMETYSKVTRFFFICNYISRI----------IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (345)
Q Consensus 175 l~~~le~~~~~~~ii~~~n~~~~l----------~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~ 244 (345)
+....... .....++++.....+ .+....+...+.+.|++.++..+++.+.+...+++.+ .++.+.+
T Consensus 160 l~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~--~~~~i~~ 236 (283)
T d2fnaa2 160 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--DYEVVYE 236 (283)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--CHHHHHH
T ss_pred HHHHHHhh-hhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH--HHHHHHH
Confidence 44444443 445555554322111 1112223457899999999999999999988877654 4689999
Q ss_pred hcCCCHHHHHHHHHHH
Q 019145 245 ISQGDLRRAITYLQGA 260 (345)
Q Consensus 245 ~s~g~~r~~~~~l~~~ 260 (345)
.++|++..+......+
T Consensus 237 ~~~G~P~~L~~~~~~~ 252 (283)
T d2fnaa2 237 KIGGIPGWLTYFGFIY 252 (283)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999998644333333
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.07 E-value=6.7e-09 Score=92.76 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=77.7
Q ss_pred EEEEEcCCCCCC------------HHHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce-eE
Q 019145 157 KIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA-KF 209 (345)
Q Consensus 157 ~iliiDE~~~l~------------~~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~-~i 209 (345)
.++++||++... ...+..++..++... .+..+|..+ -.+..+.|.+..|+. ++
T Consensus 251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v 330 (443)
T d1g41a_ 251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 330 (443)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEE
Confidence 478888887652 234556666665321 122233332 234457899999988 78
Q ss_pred EecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhcC--------CCHHHHHHHHHHHHH---Hh-
Q 019145 210 RFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSISQ--------GDLRRAITYLQGAAR---LF- 264 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s~--------g~~r~~~~~l~~~~~---~~- 264 (345)
.+.+++.+++..+|.. .++.+|+. +++++++.|++.+- --.|.+-..++.+.. +.
T Consensus 331 ~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~ 410 (443)
T d1g41a_ 331 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 410 (443)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred EccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccC
Confidence 9999999999988742 33346665 68999999987651 234555555554432 11
Q ss_pred ----CC--CCCHHHHHHhhCCC
Q 019145 265 ----GS--SITSKDLISVSGVI 280 (345)
Q Consensus 265 ----~~--~it~~~v~~~~~~~ 280 (345)
+. .|+.+.|.+.++..
T Consensus 411 p~~~~~~v~Id~~~v~~~l~~~ 432 (443)
T d1g41a_ 411 SDMNGQTVNIDAAYVADALGEV 432 (443)
T ss_dssp GGCTTCEEEECHHHHHHHHTTT
T ss_pred CCCCCCEEEECHHHHHhhhhch
Confidence 11 28888887777643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.99 E-value=1.2e-08 Score=85.79 Aligned_cols=182 Identities=10% Similarity=0.060 Sum_probs=104.5
Q ss_pred ccccHHHHHHHHHHHHcC-C--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-eeeeecCCccchHHHHHHHHHHH
Q 019145 63 VAHQEEVVRVLTNTLETA-N--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR-VLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~-~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
++|++..++.+..++... . ...+.|+|++|+|||++|+.+.+.........+. ++-++.+...+...+...+....
T Consensus 22 ~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~ 101 (277)
T d2a5yb3 22 CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 101 (277)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHH
Confidence 569999999998888542 2 2236899999999999999998874211111111 22233333333333333333322
Q ss_pred HhhhcCCC--CCCC---------------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchh
Q 019145 139 AVAVGSGQ--RRGG---------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 139 ~~~~~~~~--~~~~---------------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~ 201 (345)
........ .+.. ....++.++|+|+++.. .... .+.. ...++|+||... .+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~----~~~~--~~srilvTTR~~-~v~~~ 172 (277)
T d2a5yb3 102 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIR----WAQE--LRLRCLVTTRDV-EISNA 172 (277)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHH----HHHH--TTCEEEEEESBG-GGGGG
T ss_pred HHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHH--hhhh----hhcc--cCceEEEEeehH-HHHHh
Confidence 22111000 0000 01235679999998742 2222 2222 245677777654 34445
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRRA 253 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~l~~~s~g~~r~~ 253 (345)
+...+..+.+.+++.++..+.+...+..... +-.++....|++.|+|.|-.+
T Consensus 173 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl 225 (277)
T d2a5yb3 173 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 225 (277)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHH
Confidence 5556678999999999999998654322111 123556789999999998654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.59 E-value=1.4e-07 Score=73.44 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=39.5
Q ss_pred CeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEecCcc--cccchhhhccc--eeEEecCCCHHHHHHHH
Q 019145 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYI--SRIIEPLASRC--AKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 155 ~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~n~~--~~l~~~l~~r~--~~i~~~~~~~~~~~~~l 223 (345)
..+++++||++.. .......+.+.+.+.+ ..+|+++... ..+.+.+..+. .++...+.+.+.+.+-+
T Consensus 99 ~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~--~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd~~~~~i 172 (178)
T d1ye8a1 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPN--VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDI 172 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTT--SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHH
T ss_pred CCCceeecCCCccchhhHHHHHHHHHHhccCC--CEEEEEEccHHHHHhhceEEEEeCCEEEEECCccHHHHHHHH
Confidence 4469999998765 4566778888887643 3355555332 23344444443 36666666655444333
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.9e-07 Score=79.82 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-CCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (345)
.+....++...+.. +..+|+||||||||+++..+...+... ...+..+. +.++.......+.+.+..........
T Consensus 150 ~~~Q~~A~~~al~~---~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~-l~ApTgkAA~~L~e~~~~~~~~~~~~ 225 (359)
T d1w36d1 150 INWQKVAAAVALTR---RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLT 225 (359)
T ss_dssp CCHHHHHHHHHHTB---SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred ccHHHHHHHHHHcC---CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEE-EecCcHHHHHHHHHHHHHHHhhcCch
Confidence 34455566655532 347999999999999987765554221 11122333 34444334444433332221111000
Q ss_pred CC----------C---------------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 145 GQ----------R---------------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 145 ~~----------~---------------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.. . .......+.+++||||+.+++......++..+ +....+|++++...
T Consensus 226 ~~~~~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~---~~~~~lILvGD~~Q 299 (359)
T d1w36d1 226 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQ 299 (359)
T ss_dssp SCCCCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTTS
T ss_pred hhhhhhhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccCHHHHHHHHHHh---cCCCEEEEECChhh
Confidence 00 0 00011124679999999999877666555554 56788999997644
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=98.52 E-value=2.7e-07 Score=71.80 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 67 EEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
-..+..+..+++.....+ ++|+|||+||||.++.++.+-+.+ .++.+..+.. . +....
T Consensus 37 ~~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G------~vis~~N~~s-~----------F~Lq~---- 95 (205)
T d1tuea_ 37 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTS-H----------FWLEP---- 95 (205)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSS-C----------GGGGG----
T ss_pred HHHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCC------EEEeccCCCC-C----------ccccc----
Confidence 345577788887655555 799999999999999999998832 2222222110 0 11111
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCHHHHHH-HHHHHhhcC-------------CceEEEEecCcc---cccchhhhcccee
Q 019145 146 QRRGGYPCPPYKIIILDEADSMTEDAQNA-LRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAK 208 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l~~~~~~~-l~~~le~~~-------------~~~~ii~~~n~~---~~l~~~l~~r~~~ 208 (345)
..+.+++++||+......-.+. +..+++..+ ....+|+++|.. +.-.+.|.+|..+
T Consensus 96 -------l~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~~~~L~sRi~~ 168 (205)
T d1tuea_ 96 -------LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITV 168 (205)
T ss_dssp -------GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEE
T ss_pred -------ccCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCCCccccchhhhheEEE
Confidence 1134599999986654444443 455665311 123477787743 3345778999999
Q ss_pred EEec
Q 019145 209 FRFK 212 (345)
Q Consensus 209 i~~~ 212 (345)
++|+
T Consensus 169 f~F~ 172 (205)
T d1tuea_ 169 FEFP 172 (205)
T ss_dssp EECC
T ss_pred EECC
Confidence 9887
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.45 E-value=9.2e-08 Score=79.96 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=38.2
Q ss_pred CccccccHHHHHHHHHHHHcCC----CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 60 VKDVAHQEEVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~----~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
|.+.-+++.....+........ +..+||+||||||||++|++++.++ ..+++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~------~~~~~~i~~d 66 (273)
T d1gvnb_ 6 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET------QGNVIVIDND 66 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT------TTCCEEECTH
T ss_pred cChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHh------hcceEEEecH
Confidence 3333344444455544433322 2238999999999999999999998 5667777763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=98.24 E-value=2.4e-05 Score=58.59 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+||||+|+.+....
T Consensus 5 Iii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997764
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.07 E-value=6e-06 Score=60.94 Aligned_cols=90 Identities=23% Similarity=0.239 Sum_probs=47.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC---CCC-------------
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---GQR------------- 147 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------- 147 (345)
..+|.+|+|+|||.++-.+.... +..++.+.... .-.......+.......... +..
T Consensus 10 ~~ll~apTGsGKT~~~~~~~~~~------~~~vli~~P~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSV-AATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYG 82 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHHHTT------TCCEEEEESCH-HHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc------CCcEEEEcChH-HHHHHHHHHHHHHhhccccccccccccccccceEEEeee
Confidence 36999999999998876555443 33344333322 22222333332221110000 000
Q ss_pred ----CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh
Q 019145 148 ----RGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (345)
Q Consensus 148 ----~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le 180 (345)
.......++++|||||+|.++.+....+..+++
T Consensus 83 ~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~ 119 (136)
T d1a1va1 83 KFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119 (136)
T ss_dssp HHHHTTGGGGCCCSEEEEETTTCCSHHHHHHHHHHHH
T ss_pred eeccccchhhhcCCEEEEecccccCHHHHHHHHHHHH
Confidence 000123467899999999998876555544444
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=98.05 E-value=1.3e-06 Score=67.29 Aligned_cols=25 Identities=40% Similarity=0.681 Sum_probs=23.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||||+||||+++.|++.+
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.7e-06 Score=65.90 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=25.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
.+++|+||||+||||+++.|++.+ +.+++.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L------~~~~id 32 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL------NMEFYD 32 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT------TCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------CCCeEe
Confidence 469999999999999999999998 555553
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=2.2e-05 Score=62.03 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=22.5
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPH-MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~-lll~G~~G~GKT~la~~la~~l~ 107 (345)
..|+ ++|.||+|+||||++-.+|..+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344 58999999999999999998874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=2.3e-06 Score=65.64 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=27.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
|+++|.|+||+||||+++.+++.+ +.+|+..
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l------~~~fiD~ 32 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKAL------GVGLLDT 32 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH------TCCEEEH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh------CCCeEee
Confidence 578889999999999999999999 6677654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.96 E-value=1.1e-05 Score=63.95 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=69.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCCCCC----------
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRRGGY---------- 151 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------- 151 (345)
++|.||+|+||||++-.+|..+.. ......++..+.......+ .++.+... ...........
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~-~g~kV~lit~Dt~R~ga~e----QL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKK-KGFKVGLVGADVYRPAALE----QLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHH-TTCCEEEEECCCSSHHHHH----HHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCceEEEEeeccccchhH----HHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 688999999999999999987742 2233344444433322222 22222221 11111000000
Q ss_pred -CCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhcCC-ceEEEEecCcccccchhhhccc-----eeEEecCCCHHHHH
Q 019145 152 -PCPPYKIIILDEADSMTED----AQNALRRTMETYSK-VTRFFFICNYISRIIEPLASRC-----AKFRFKPLSEEVMS 220 (345)
Q Consensus 152 -~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~~~-~~~ii~~~n~~~~l~~~l~~r~-----~~i~~~~~~~~~~~ 220 (345)
...++++|+||=+...+.+ ....+.++.+...+ .+.+++.++........+..++ .-+-|.+++.....
T Consensus 90 ~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDet~~~ 169 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKG 169 (211)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEECTTSCSCH
T ss_pred hhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEEEecccCCCcc
Confidence 1235679999988764321 23445555554333 4445555544333333333322 24567788776666
Q ss_pred HHHHHHHHHhCCC
Q 019145 221 SRVLHICNEEGLN 233 (345)
Q Consensus 221 ~~l~~~~~~~~~~ 233 (345)
.-+-..+...+++
T Consensus 170 G~~l~~~~~~~lP 182 (211)
T d1j8yf2 170 GGALSAVAATGAT 182 (211)
T ss_dssp HHHHHHHHTTTCC
T ss_pred cHHHHHHHHHCcC
Confidence 6555555555555
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.94 E-value=1.1e-05 Score=63.62 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..++|+||+|+||||++-.+|+.+.
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999998874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=1.1e-05 Score=62.12 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
-++++|+||+||||+++.++...
T Consensus 16 liil~G~pGsGKST~a~~l~~~~ 38 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVSA 38 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999887665
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.92 E-value=2e-05 Score=57.98 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCCHHHHH--HHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSMTEDAQN--ALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~~~~--~l~~~le~~~~~~~ii~~~n~ 194 (345)
..+.++||+||+|.+++.... .+...+........+.+++++
T Consensus 96 ~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 96 VVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp CCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 346789999999999765432 333334333333333444443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.90 E-value=2.3e-06 Score=66.66 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|||||||||+|++|++.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999998
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=97.90 E-value=4.4e-05 Score=62.84 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 69 VVRVLTNTLETA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 69 ~~~~l~~~l~~~-~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
....+..++..+ ...+ ++|+||+++|||+++.++.+.+ + .+..++.... . +...
T Consensus 89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g------~~~~~~~~~~-~----------f~l~------ 144 (267)
T d1u0ja_ 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV-P------FYGCVNWTNE-N----------FPFN------ 144 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS-S------CEEECCTTCS-S----------CTTG------
T ss_pred HHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh-c------chhhccccCC-C----------cccc------
Confidence 335666666433 3334 7999999999999999999887 2 1111221110 0 0000
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc--------------CCceEEEEecCcccc----------cchhh
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYISR----------IIEPL 202 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~--------------~~~~~ii~~~n~~~~----------l~~~l 202 (345)
.....+++++||...-. ...+.+.+++..- .+...+|+++|.... -...+
T Consensus 145 -----~l~~k~~~~~~e~~~~~-~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~~~~~~~~~l 218 (267)
T d1u0ja_ 145 -----DCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPL 218 (267)
T ss_dssp -----GGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHH
T ss_pred -----ccCCCEEEEEeCCCccc-cHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCcccccCCCccccccchHh
Confidence 11234699999987543 3345566666521 134556666665433 24689
Q ss_pred hccceeEEecC--------CCHHHHHHHHH
Q 019145 203 ASRCAKFRFKP--------LSEEVMSSRVL 224 (345)
Q Consensus 203 ~~r~~~i~~~~--------~~~~~~~~~l~ 224 (345)
.+|...+.|+. ++.++++.++.
T Consensus 219 ~~R~~~~~F~~~~p~~~~~i~~~e~k~f~~ 248 (267)
T d1u0ja_ 219 QDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred hhhEEEEECCCcCCCccCCCCHHHHHHHHH
Confidence 99998887754 34456666664
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.88 E-value=4e-06 Score=63.93 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=26.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
+++|+|+||+||||+++.+|+.+ +.+|+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l------~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL------DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH------TCEEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh------CCCEEec
Confidence 58899999999999999999999 6677654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=4.4e-06 Score=64.88 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=23.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++|+|||||||||+++.++..+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4799999999999999999999984
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.81 E-value=6.6e-06 Score=63.26 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=26.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.+++|+|+||+||||+++.+|+.+ +.+++..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L------g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL------GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH------TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh------CCCEEeh
Confidence 358899999999999999999999 6666643
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.79 E-value=5.2e-05 Score=60.01 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
++..++...+.+..++..+ +.++.+|+|+|||.++-.++..+
T Consensus 68 ~~~Lr~yQ~eav~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 109 (206)
T d2fz4a1 68 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 109 (206)
T ss_dssp CCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEeCCCCCceehHHhHHHHh
Confidence 3445666677777666433 47889999999999998888876
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=1.7e-05 Score=62.84 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 82 CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 82 ~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
.|+ ++|+||+|+||||++-.+|..+... ....-++..+..
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~-~~kV~lit~Dt~ 50 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTF 50 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCceEEEeeccc
Confidence 344 6899999999999999999887432 233344444443
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00025 Score=54.62 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|.||||+||||.++.|++.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.73 E-value=8.3e-06 Score=62.66 Aligned_cols=25 Identities=48% Similarity=0.654 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.-+++|+||||+||||+++.|++.+
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=1.4e-05 Score=61.16 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+||||+++.|++.+
T Consensus 9 ivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.70 E-value=8.5e-06 Score=62.69 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=26.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.++|.||||+||||+++.+++.+ +.+++.++.
T Consensus 6 iI~l~G~~GsGKSTia~~La~~l------g~~~~~~~~ 37 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLP------GVPKVHFHS 37 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS------SSCEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEecH
Confidence 37899999999999999999887 556665543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.68 E-value=1e-05 Score=62.03 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+||||+|+.|++.+
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999987
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.65 E-value=2.2e-05 Score=60.24 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+|+.|++.+
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999998
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.65 E-value=5.3e-05 Score=59.73 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=53.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCCCCC----------
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRRGGY---------- 151 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------- 151 (345)
++|.||+|+||||++-.+|..+... +..+.-+++...+.. . .+.++.+... ...........
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~---g~kV~lit~Dt~R~g-A-~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~ 87 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA-A-REQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 87 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH-H-HHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEecccccch-H-HHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence 5889999999999999999887432 233333333221111 1 1222222222 11100000000
Q ss_pred -CCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecC
Q 019145 152 -PCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICN 193 (345)
Q Consensus 152 -~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n 193 (345)
....+++|+||=+...+ ....+.|.++.+...+ .+.+++.++
T Consensus 88 ~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~ 133 (207)
T d1ls1a2 88 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 133 (207)
T ss_dssp HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred HhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccc
Confidence 12355799999887664 4556666666554433 334444443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.64 E-value=1.3e-05 Score=61.80 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+|+||+||||++++|++.+.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00029 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||||+||||.|+.|++.+
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.52 E-value=2e-05 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..++|.||||+||||+++.|++.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3346999999999999999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.51 E-value=3e-05 Score=60.47 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+-.++|.||||+||||+++.|++.+
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.51 E-value=3.7e-05 Score=59.45 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|.||||+||||.++.|++.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=2.5e-05 Score=61.11 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+|+||+||||+|+.|++.+.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999884
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.48 E-value=4e-05 Score=60.29 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=17.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
+.++++|+|+|||.++-.++..
T Consensus 25 n~lv~~pTGsGKT~i~~~~~~~ 46 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIAMMIAEY 46 (200)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEeCCCCcHHHHHHHHHHH
Confidence 5899999999999876655543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=3.5e-05 Score=58.65 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
|.+.|+|++|+||||+++.+++.+.
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.47 E-value=0.00071 Score=57.05 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....+..++..+. +++++||+|+||||+++++...+
T Consensus 153 ~~~~~~l~~~v~~~~--nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHHHHHHHHTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCC--CEEEEeeccccchHHHHHHhhhc
Confidence 556677777777665 69999999999999999999876
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.45 E-value=5.7e-05 Score=58.86 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||||.++.|++.+
T Consensus 5 riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.44 E-value=4.3e-05 Score=59.97 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||||+||||+|+.|++.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999987
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.0013 Score=52.45 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.|..-..|...+..+...+..+.+-+.||+|.+|+|||.++-..+...
T Consensus 53 P~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~ 100 (233)
T d2eyqa3 53 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 100 (233)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence 444445688888999999999888888999999999998877666554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.35 E-value=6.9e-05 Score=58.62 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||||+||||.++.|++.+
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.35 E-value=7.6e-05 Score=57.71 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.||||+||||.++.|++.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.33 E-value=8.1e-05 Score=57.99 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
-.++|.||||+||||+++.|+..+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999987
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=8.6e-05 Score=57.30 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.||||+||||+++.|+..+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7888999999999999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=9.1e-05 Score=59.09 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
|.+.+.||||+||+|.++.|++.+
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888999999999999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=9.7e-05 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|.||||+||||.++.|++.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999998
|
| >d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00061 Score=49.97 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=81.0
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
.+...++.+-.+..+|+|+.-.-+..+...+.+.+...+.........+ ..... ...+...... +
T Consensus 8 ~L~~~l~k~l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~t~----------s 72 (140)
T d1jqlb_ 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID--PNTDW---NAIFSLCQAM----------S 72 (140)
T ss_dssp GHHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCS--TTCCH---HHHHHHHHCC----------C
T ss_pred HHHHHHhcCCCcEEEEEcChHHHHHHHHHHHHHHHHhCCcceeeeeccc--ccCCH---HHHHHHHcCC----------C
Confidence 3455566554444699999999999999999888754433322222222 22233 3333333322 3
Q ss_pred CCCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcCCceEEEEecCcc------cccchhhhccceeEEe
Q 019145 152 PCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRF 211 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~~~~~ii~~~n~~------~~l~~~l~~r~~~i~~ 211 (345)
..+.+++|+|++.+.. ++...+.|..+++.++..+.+|++++.. .++.+.+..++.+|.+
T Consensus 73 lF~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~C 139 (140)
T d1jqlb_ 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp TTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred cccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHHHHhCCeEEeC
Confidence 4467889999988765 4667788999999988888888877532 3456677777666654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.20 E-value=9.7e-05 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++|.|+||+||||+++.|++.+..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999998843
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.19 E-value=0.001 Score=57.90 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=39.7
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+.+++++--.+.....+.+++.... .-+|++||+|+||||++.++.+.+..
T Consensus 134 ~~~l~~LG~~~~~~~~l~~l~~~~~-GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 134 RLDLHSLGMTAHNHDNFRRLIKRPH-GIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSS-EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred chhhhhhcccHHHHHHHHHHHhhhh-ceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 3467777556777888887765543 34799999999999999999999854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.13 E-value=0.00012 Score=57.71 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++|.||+||||+|+.|++.+.
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.11 E-value=0.00031 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+-|+||+|+||||+|+.|+..+.
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45999999999999999998873
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.11 E-value=0.00017 Score=57.50 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.||||+||||.|+.|++.+
T Consensus 6 IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.10 E-value=0.00023 Score=56.16 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=25.6
Q ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 74 ~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.......+..++|+|.||+||||+++.|++.+
T Consensus 16 r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 16 RTELRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 333444444457999999999999999999876
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.001 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|.|+||+|||++++++...
T Consensus 4 I~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.00 E-value=0.00017 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|.|+||+||||+++.+++.+.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999984
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0017 Score=52.10 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.+++++++||.- .+.......+.+.+.+......+|++|.+..
T Consensus 156 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 199 (241)
T d2pmka1 156 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199 (241)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred cccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 356799999975 4777777777777766544445666665543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.98 E-value=0.00049 Score=51.88 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988864
|
| >d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta subunit species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00025 Score=51.14 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 284 VVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 284 ~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
++|+++|++..+|...++..+..|..+|++|..+++.|.+++++++.
T Consensus 2 ~~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~ 48 (127)
T d1jr3d1 2 TPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVN 48 (127)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999998863
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.96 E-value=0.00069 Score=53.01 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCCH----HHHHHHHHHHhhcCCceEEEEec
Q 019145 155 PYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 155 ~~~iliiDE~~~l~~----~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
..++||+||+|.+.. ...+.++..+....+++.+|+.|
T Consensus 138 ~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lS 179 (202)
T d2p6ra3 138 AVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179 (202)
T ss_dssp GCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEc
Confidence 457999999998742 33455666666656666666544
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0051 Score=48.04 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCC-HHHHHHHHHHHhhcCCceEEEEecC
Q 019145 154 PPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 154 ~~~~iliiDE~~~l~-~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
..-+.+|+||+|.+. ....+.+..+++..+.+..+++.+.
T Consensus 145 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SA 185 (206)
T d1veca_ 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred cccceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEe
Confidence 455799999999764 3334455566666566666666553
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.004 Score=48.63 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCC-HHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 154 PPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 154 ~~~~iliiDE~~~l~-~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.+-+.+++||+|.+- ....+.+..+++..+....+++.+..
T Consensus 142 ~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SAT 183 (206)
T d1s2ma1 142 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSAT 183 (206)
T ss_dssp TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESC
T ss_pred ccceEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEe
Confidence 445689999999875 34556677777776666666665533
|
| >d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein YrvN species: Prochlorococcus marinus [TaxId: 1219]
Probab=96.87 E-value=0.0011 Score=49.01 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
+.+.++.++++++++|.++|+-.|..|++.|+||..|.+.|...-..-
T Consensus 2 HYd~iSA~~KSiRgSD~dAAly~larml~~Gedp~~i~RRli~~AsED 49 (163)
T d3ctda1 2 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 49 (163)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999998876644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00032 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||++++.++++.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999886
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.84 E-value=0.00035 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||++++.+++..
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999999886
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.0032 Score=49.46 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecCc
Q 019145 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.+-+.+++||+|.+... ..+.+.++++..+....+++.+..
T Consensus 150 ~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT 191 (212)
T d1qdea_ 150 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 191 (212)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CcceEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEee
Confidence 45678999999977432 345566666666666666665533
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.82 E-value=0.0024 Score=51.59 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=29.6
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+.+++++||.- .+.......+.+.+........+|++|.+..
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~ 214 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 56799999975 5677777788888876555545666665543
|
| >d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein NTHI1458 species: Haemophilus influenzae [TaxId: 727]
Probab=96.76 E-value=0.0009 Score=50.70 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
.+.+.++.++++++++|.++|+-.|..|++.|+||..|.+.|...-..-
T Consensus 3 ~hYd~iSA~~KSiRgSD~dAaly~larml~~GeDp~~i~RRl~~~AsED 51 (184)
T d3bgea1 3 RFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCChHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999999999999999998776643
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.0024 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998654
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.0025 Score=50.35 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecCcc
Q 019145 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..-+.+++||+|.+... ..+.+..+++..+.+..+++.+...
T Consensus 154 ~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 154 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ccceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecC
Confidence 34579999999987432 3455556666666667777766443
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.74 E-value=0.0041 Score=50.21 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=28.0
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+.+++++||.- .+.......+.+.+.+......+|++|.+..
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 212 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 212 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 46799999975 5677777777777765444445566664433
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.015 Score=45.16 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
..+-+.+++||+|.+- ....+.+..+++..+....+++.+..
T Consensus 143 l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT 186 (207)
T d1t6na_ 143 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 186 (207)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred ccccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeee
Confidence 3456799999999663 24555666666666666666665543
|
| >d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: gamma subunit species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0036 Score=44.64 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
..+.++++++++..+|..+++..++++.+.|.|+..++..|...+|++++-
T Consensus 3 D~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~ 53 (126)
T d1jr3a1 3 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 53 (126)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999997653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.0039 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|.|+||+|||++++.+...-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.013 Score=43.63 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7999999999999999998753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.003 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|++|+|||++++.+.+.-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7999999999999999998754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.61 E-value=0.0013 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
++|.|+=|+|||++++.+++.+..
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEecCCCccHHHHHHHHHhhccc
Confidence 689999999999999999999853
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.61 E-value=0.0028 Score=51.36 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=35.9
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
--.|..++..+...+..+.+-+-||.|..|+|||-++-..+...
T Consensus 85 T~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~ 128 (264)
T d1gm5a3 85 TNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN 128 (264)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHH
Confidence 33578888888888888887778999999999998877666544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.61 E-value=0.00058 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
-++|+||+|+||||+++.+....
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0014 Score=49.82 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+.+.-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999987653
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.57 E-value=0.0058 Score=47.76 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
..+-+.++|||+|.+ .......+.++++..+....+++.+..
T Consensus 143 ~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT 185 (208)
T d1hv8a1 143 LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT 185 (208)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSS
T ss_pred cccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEcc
Confidence 345579999999975 333345566667666666677766543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.54 E-value=0.00094 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||||+|||+++..++....
T Consensus 29 ~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 29 ILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998863
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.011 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.|.|.+|+|||++++.+...
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999764
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0074 Score=47.67 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCC-HHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 154 PPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 154 ~~~~iliiDE~~~l~-~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
..-+.+|+||+|.+. ....+.+..+++..+....+++.+..
T Consensus 158 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT 199 (222)
T d2j0sa1 158 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 199 (222)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred ccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEe
Confidence 456799999999764 33455666677766666666665543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0038 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998753
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=96.49 E-value=0.0052 Score=50.55 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.-++.....+..+++.++ .++.-|+|+|||.++..+++.+
T Consensus 112 ~~~rdyQ~~av~~~l~~~~---~il~~pTGsGKT~i~~~i~~~~ 152 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRR---RILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSE---EEECCCTTSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCC---ceeEEEcccCccHHHHHHHHHh
Confidence 4456777788888887654 7888899999999888887655
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.0017 Score=52.06 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=26.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDD 124 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~ 124 (345)
++|+||||+|||+++..++...... ...+..++.++....
T Consensus 37 ~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (251)
T d1szpa2 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 79 (251)
T ss_dssp EEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence 7999999999999999887654211 122344555554443
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.001 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+...-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.41 E-value=0.00099 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+-++|++|+||||++..++..+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999884
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.40 E-value=0.0035 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||||+|||+++..++....
T Consensus 39 ~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 39 TEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhh
Confidence 69999999999999999988763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0028 Score=47.95 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||+|++.+...-
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~~ 30 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQSY 30 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999987653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.0034 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.0034 Score=47.94 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 8 ivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999988754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0031 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|.+|+|||++++.+...
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999998764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0013 Score=50.35 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.+.+..
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.32 E-value=0.0068 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999987643
|
| >d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein EfaeDRAFT 0938 species: Enterococcus faecium [TaxId: 1352]
Probab=96.32 E-value=0.0045 Score=40.16 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 283 ~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
+.++.++++++++|.++|+..+.+|++.| ||..|.+.|...-..
T Consensus 2 d~iSA~~KSiRgSD~dAAlywlarml~~G-D~~~i~RRLi~~AsE 45 (88)
T d2qw6a1 2 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYE 45 (88)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCccHHHHHHHHHHHcC-ChhHHHHHHHHHHHH
Confidence 45788999999999999999999999999 888899888766543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.063 Score=42.39 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|+||..+|||++++.++-..
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHHHH
Confidence 347999999999999999987764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0054 Score=45.92 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+...-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999988754
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=96.28 E-value=0.0043 Score=45.88 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..+++||+||+...-. =..+.++.+++..|...-+|+|++.. ++.|..+.+
T Consensus 93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~---p~~L~e~AD 146 (157)
T d1g5ta_ 93 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC---HRDILDLAD 146 (157)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhcc
Confidence 4678999999743211 01345777888889999999999754 345666655
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.26 E-value=0.0057 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
-.++|.|.||+|||+++..+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.23 E-value=0.011 Score=43.99 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|++|+|||++++.+...-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0029 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+...
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999998764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0014 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
-++|+||+|+|||++.+.+....
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0075 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||||+|||+++..++....
T Consensus 40 ~~i~G~~GsGKT~lalq~~~~~~ 62 (258)
T d1v5wa_ 40 TEAFGEFRTGKTQLSHTLCVTAQ 62 (258)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999988653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.19 E-value=0.0015 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|+||+|||++++.+...-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999997664
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0015 Score=51.35 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
++|+||||+|||+++..++.....
T Consensus 26 ~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 26 TEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 699999999999999999887643
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=96.18 E-value=0.022 Score=41.11 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
.+.++|+|||++.++. ....+...+... +..+++.+
T Consensus 78 ~~~dvI~IDE~QFf~d-~i~~~~~~~~~~--g~~Viv~G 113 (139)
T d2b8ta1 78 DETKVIGIDEVQFFDD-RICEVANILAEN--GFVVIISG 113 (139)
T ss_dssp TTCCEEEECSGGGSCT-HHHHHHHHHHHT--TCEEEEEC
T ss_pred cCcCEEEechhhhcch-hHHHHHHHHHhc--CceEEEEE
Confidence 3567999999999974 455666666553 33455554
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0014 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+-|+|++|+||||+++.|+..+.
T Consensus 5 IgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45999999999999999999873
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.16 E-value=0.0061 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|.+|+|||++++.+.+.-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~~ 28 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVEDS 28 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.0012 Score=52.17 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
-+..|..+++. ...+|.|++|+||||+++++...
T Consensus 85 g~~~L~~~l~~---kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 85 GIEELKEYLKG---KISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp THHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTT
T ss_pred hHhhHHHHhcC---CeEEEECCCCCCHHHHHHhhcch
Confidence 35667777743 24799999999999999998654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.00074 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|.+|+|||++++.+...-
T Consensus 5 ivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999888754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0026 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+.+.-
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 7999999999999999988754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.88 E-value=0.004 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+=|+||||+||||++..+++.+.
T Consensus 54 igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EeeeCCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999998763
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.014 Score=45.34 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecCc
Q 019145 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.-+.++|||+|.+... ..+.+..++...+.+..+++.+..
T Consensus 147 ~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SAT 187 (209)
T d1q0ua_ 147 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 187 (209)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred cceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEcc
Confidence 4468999999987543 234455556665666677766543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.005 Score=51.70 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=27.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+=++||||+||||++..+++.+... .....++.++++.
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~~~-g~~vavlavDpss 94 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAVDPSS 94 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCC-
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhc-CCceeeecCCCce
Confidence 337899999999999999999887432 2234455555443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.81 E-value=0.021 Score=46.25 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
..|+||+|+|||+++..++....
T Consensus 63 ~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 63 IEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHHHh
Confidence 59999999999999987777653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0028 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
-|.++|.|+||+|||+|+..+...-
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3569999999999999999998763
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.75 E-value=0.0028 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|.||+|||+|++.+...-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999997653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.75 E-value=0.0029 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+||||++..+.+.+
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=95.75 E-value=0.045 Score=44.89 Aligned_cols=18 Identities=39% Similarity=0.683 Sum_probs=14.6
Q ss_pred CCeEEEEEcCCCCCCHHH
Q 019145 154 PPYKIIILDEADSMTEDA 171 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~ 171 (345)
.+.+++|+||+|.+....
T Consensus 99 ~~~~~vViDE~H~~~~~~ 116 (305)
T d2bmfa2 99 PNYNLIIMDEAHFTDPAS 116 (305)
T ss_dssp CCCSEEEEESTTCCSHHH
T ss_pred cceeEEEeeeeeecchhh
Confidence 456799999999997654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.0091 Score=44.80 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~~ 28 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQKI 28 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0079 Score=49.22 Aligned_cols=34 Identities=35% Similarity=0.589 Sum_probs=24.2
Q ss_pred HHHHHHcCCCCc-E-EEeCCCCCCHHHHHHHHHHHh
Q 019145 73 LTNTLETANCPH-M-LFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 73 l~~~l~~~~~~~-l-ll~G~~G~GKT~la~~la~~l 106 (345)
+..+...+.... + -|.|++|+||||++..+...+
T Consensus 16 ~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 16 IPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp HHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence 334444444433 3 589999999999999988776
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.70 E-value=0.0051 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=18.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||.++-..+...
T Consensus 59 ~~~~i~apTGsGKT~~~~~~~~~~ 82 (237)
T d1gkub1 59 ESFAATAPTGVGKTSFGLAMSLFL 82 (237)
T ss_dssp CCEECCCCBTSCSHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHHHHHHH
Confidence 369999999999998766555443
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.003 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|+||+|||+|+..+...-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.70 E-value=0.0049 Score=51.04 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.0
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.|+||||||+++-
T Consensus 15 ~~~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVIT 32 (306)
T ss_dssp SEEEECCCTTSCHHHHHH
T ss_pred CCEEEEeeCCccHHHHHH
Confidence 458999999999997653
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.66 E-value=0.038 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||...|||++++.++-..
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhHHHH
Confidence 37999999999999999887654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.64 E-value=0.0037 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|.|++|+|||+++..+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999988543
|
| >d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein EfaeDRAFT 0938 species: Enterococcus faecium [TaxId: 1352]
Probab=95.60 E-value=0.012 Score=44.36 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
.+.+.++.++++++++|.++|+..+.+|++.| ||..|.+.|...-..-
T Consensus 2 ~hyd~iSA~~KSiRgSD~daAly~larml~~G-d~~~i~RRL~~~AsED 49 (186)
T d2r9ga1 2 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 49 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CchHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999 8999999887765543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.004 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+...-
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.56 E-value=0.011 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.6
Q ss_pred CcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~-~la~~l 106 (345)
.++++.|+||||||+++- .+++.+
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHHH
Confidence 458999999999997654 444444
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.51 E-value=0.0036 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+-|.||+|+||||+++.++.-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCcchhhHhccCCC
Confidence 357999999999999999887654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0034 Score=47.36 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=17.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+...
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.015 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+-|.|++|+||||+++.|...+.
T Consensus 83 IGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCcHHHHHHHHHHh
Confidence 57999999999999999999873
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.47 E-value=0.002 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|+.|+||||+++.|++.+
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0049 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
-+.|.|+.|+||||.++.|++.+..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999998743
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.0045 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.|+.|+||||+++.|++.+.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999874
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0048 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
-+.|.|++|+||||.++.+++.+..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998743
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.42 E-value=0.0041 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++.-+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46788999999999999998866
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.37 E-value=0.0041 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3899999999999999998654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0054 Score=48.63 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+-|.||+|+||||+++.++.-.
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 347999999999999999997755
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.34 E-value=0.0048 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~~ 29 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADDS 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 7999999999999999998653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.32 E-value=0.0045 Score=48.09 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+.+.++..+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 47899999999999999998765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.0056 Score=48.12 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.-+.|.|+.|+||||.++.|++.+
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457999999999999999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.28 E-value=0.0048 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+|+||+|||+++..++..+.
T Consensus 37 ~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 37 TEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998763
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.024 Score=40.60 Aligned_cols=115 Identities=14% Similarity=0.070 Sum_probs=51.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-ccchHHHHHHHHH-HHHhhhcCCCCCCCCCCCCeEEEEEcC
Q 019145 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKIIILDE 163 (345)
Q Consensus 86 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iliiDE 163 (345)
+++||=.+|||+-.-..++.... .+..++.+++.. .+........-.. ........... ......+.++|+|||
T Consensus 6 li~GpMfsGKTt~Li~~~~~~~~---~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~I~IDE 81 (133)
T d1xbta1 6 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRD-VAQEALGVAVIGIDE 81 (133)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTCCC--------------CEEESSGGG-GHHHHHTCSEEEESS
T ss_pred EEEecccCHHHHHHHHHHHHHHH---cCCcEEEEecccccCCcceeeecCCCcceeeeeechhh-hhhhhcccceEEeeh
Confidence 88999999999866665555421 133455454432 2221111000000 00000000000 000012456999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCceEEEEec------Ccccccchhhhcccee
Q 019145 164 ADSMTEDAQNALRRTMETYSKVTRFFFIC------NYISRIIEPLASRCAK 208 (345)
Q Consensus 164 ~~~l~~~~~~~l~~~le~~~~~~~ii~~~------n~~~~l~~~l~~r~~~ 208 (345)
++.++ + ...+...+.+. +..+++.+ ..+..-...|...++.
T Consensus 82 aQFf~-d-l~~~~~~~~~~--~~~Viv~GLd~Df~~~~F~~~~~Ll~~Ad~ 128 (133)
T d1xbta1 82 GQFFP-D-IVEFCEAMANA--GKTVIVAALDGTFQRKPFGAILNLVPLAES 128 (133)
T ss_dssp GGGCT-T-HHHHHHHHHHT--TCEEEEECCSBCTTSSBCTTGGGGGGGCSE
T ss_pred hHHHH-H-HHHHHHHHHhc--CCcEEEEEeccccccCcchhHHHHHHhcCE
Confidence 99996 3 34444555542 34455554 2233334555555553
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.24 E-value=0.0055 Score=46.26 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||+++-.+...
T Consensus 16 gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHc
Confidence 4899999999999999988765
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.21 E-value=0.025 Score=45.72 Aligned_cols=35 Identities=37% Similarity=0.417 Sum_probs=25.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..|+||+|+|||+++..++..+... +..++.++..
T Consensus 60 tei~G~~~sGKT~l~l~~~~~aqk~---g~~v~yiDtE 94 (268)
T d1xp8a1 60 TEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAE 94 (268)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred EEEecCCccchHHHHHHHHHHHHhC---CCEEEEEECC
Confidence 5999999999999999988887432 2344555543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0057 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0059 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|.+|+|||++++.+...-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7999999999999999987643
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.17 E-value=0.0067 Score=48.26 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+-|.||+|+||||+++.+..-.
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 347999999999999999998765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.15 E-value=0.0055 Score=47.21 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~ 104 (345)
.+.+.|.|+||+||||+++++..
T Consensus 23 ~~~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHhcC
Confidence 45699999999999999999974
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.012 Score=47.72 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=27.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..|+||||+|||+++..++..+..+ +..++.++....
T Consensus 57 tei~G~~gsGKTtl~l~~~~~~q~~---g~~~vyidtE~~ 93 (263)
T d1u94a1 57 VEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHA 93 (263)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred EEEecCCCcHHHHHHHHHHHHHHcC---CCEEEEEccccc
Confidence 6999999999999999988887433 334555665543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=95.14 E-value=0.0055 Score=48.84 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+-|.||+|+||||+++.++.-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47999999999999999998765
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0049 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
-+.|.|+.|+||||+++.|++.+.
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 478999999999999999999873
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.0057 Score=46.69 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.09 E-value=0.0054 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|+|+||+|||+++..++..
T Consensus 29 ~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 29 TLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 699999999999999776543
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.0052 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+-|.||+|+||||+++.++.-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 347999999999999999997654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.0069 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 7899999999999999987643
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.02 E-value=0.0065 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+.+.|+||+|||++++++...
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999743
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0061 Score=45.86 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|.|.+|+|||++++.+...
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.00 E-value=0.093 Score=43.70 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
|.|-|+-|+||||+++.+++.+.
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEECCccCCHHHHHHHHHHHhc
Confidence 78999999999999999999873
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.0073 Score=45.00 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~ 26 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGR 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.007 Score=45.44 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|.+|+|||++++.+...
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.94 E-value=0.0075 Score=45.95 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|.+|||||++++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=94.83 E-value=0.0057 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.++.-.
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 347999999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.0072 Score=45.21 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 7 v~liG~~~vGKTsLl~~~~~~~ 28 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEGQ 28 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8899999999999999987643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.0072 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999987653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0084 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+...
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0086 Score=45.12 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+.+.-
T Consensus 9 I~vvG~~~vGKSSli~~~~~~~ 30 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTNK 30 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999887743
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0085 Score=44.80 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999988764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.79 E-value=0.0057 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||+++-.+...
T Consensus 17 gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999888754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0087 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7999999999999999988653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0092 Score=47.98 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC--ceEEEEecCcc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYI 195 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~ 195 (345)
.+++++++||.- .+.......+.+.+.+... ...+|++|.+.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l 212 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL 212 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH
Confidence 356799999964 5777777777777765432 34456666543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.71 E-value=0.0068 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|+||+||||+++++..+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999754
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.70 E-value=0.1 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
|.|-|+-|+||||+++.+++.+
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC--
T ss_pred EEEECCcCCCHHHHHHHHHHHh
Confidence 6889999999999999998776
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.70 E-value=0.0078 Score=45.10 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||+++-.+.+.
T Consensus 17 gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHc
Confidence 4899999999999999888776
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.0098 Score=44.57 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999987654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.64 E-value=0.0074 Score=45.50 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.2
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
+++.|++|+|||++++.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999998854
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.017 Score=46.98 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.+..-+..+....++++|.-|+||||++-.+|..+... +..+.-+++
T Consensus 10 ~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~---G~rVllvD~ 56 (279)
T d1ihua2 10 ALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM---GFDVHLTTS 56 (279)
T ss_dssp HHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeC
Confidence 34444555555557999999999999999998887432 234444444
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0036 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
-+.|.|+.|+||||+++.|++.+
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0095 Score=44.60 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 789999999999999988654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.62 E-value=0.0088 Score=45.82 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.8
Q ss_pred EEEeCCCCCCHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la 103 (345)
+-++|++|+||||+|+.+.
T Consensus 6 IgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3589999999999999884
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.61 E-value=0.0052 Score=48.99 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.++.-.
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 358999999999999999998754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.59 E-value=0.0077 Score=48.17 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.+..-+
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999998765
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.58 E-value=0.084 Score=37.95 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
++++|+|||++.++......+..+ ... +..+++.+
T Consensus 80 ~~dvI~IDE~QFf~d~~~~~~~~l-~~~--g~~Viv~G 114 (141)
T d1xx6a1 80 DTEVIAIDEVQFFDDEIVEIVNKI-AES--GRRVICAG 114 (141)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHH-HHT--TCEEEEEE
T ss_pred cccEEEEeehhhccccHHHHHHhh-eeC--CcEEEEEE
Confidence 567999999999987665555554 432 23455554
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.0098 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999998766
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.54 E-value=0.017 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|+||+|||+++..++..+
T Consensus 38 ~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhh
Confidence 6999999999999999998654
|
| >d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.50 E-value=0.049 Score=36.30 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Q 019145 281 PPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~~~~ 328 (345)
.++.+..+++.+..+++..+...+.++. +.|+++.+|+..|.+.+..+
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~ 51 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL 51 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 4677889999999999999999999985 57999999999998877654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.011 Score=44.54 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|.|.+|+|||++++.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999988643
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.072 Score=35.41 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHH
Q 019145 281 PPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~ 329 (345)
++..+.++++.+.++++..|...+.++. +.|+++.+|+..|.+.+...-
T Consensus 2 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~~ 51 (95)
T d1sxjc1 2 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYE 51 (95)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4667889999999999999999999986 569999999999999887653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.01 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+|+|+||+|||+++..++..+.
T Consensus 32 ~~i~G~~G~GKS~l~l~la~~ia 54 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLAAQIA 54 (274)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999988753
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.041 Score=36.37 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
++.+.++++++.++++..+...+..++.+|++..+|+..|.+.+..
T Consensus 3 ~~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~ 48 (91)
T d1sxjd1 3 HDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT 48 (91)
T ss_dssp SHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999887643
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.037 Score=42.70 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=17.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
.++++.-|+|+|||.+......
T Consensus 41 ~~vlv~apTGsGKT~~~~~~~~ 62 (206)
T d1oywa2 41 RDCLVVMPTGGGKSLCYQIPAL 62 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCcchhhhhhh
Confidence 3799999999999987754443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=94.31 E-value=0.012 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+-|.||+|+||||++++++.-.
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 347999999999999999997644
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.011 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+...-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHhhCC
Confidence 7899999999999999988643
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.22 E-value=0.0083 Score=49.07 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=19.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.+-++|++|+||||+++++.+.+
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999998876
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.16 E-value=0.015 Score=45.17 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=16.8
Q ss_pred EEEeCCCCCCHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la 103 (345)
+-++|++|+||||+++.+.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999875
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=94.14 E-value=0.039 Score=50.99 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=39.8
Q ss_pred hhhhhCCCCCccccccHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 51 WVEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|+.....++.-+--.+ .+...+...+....+++.|++|+|||..++.+.+.+
T Consensus 53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566655555554442222 455666667766679999999999999999999987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.11 E-value=0.028 Score=45.24 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHH
Q 019145 71 RVLTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 71 ~~l~~~l~~~~~~--~lll~G~~G~GKT~la~~la~~ 105 (345)
..+...++..... +++|.|.||+|||+++..+..+
T Consensus 19 ~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 19 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence 3444444443322 4899999999999999999764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.07 E-value=0.013 Score=43.99 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+++.|+||+|||++++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.05 E-value=0.011 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
+++.|.|.||+||||+++++..
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.98 E-value=0.0084 Score=45.52 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.9
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
+++.|++|+|||++++.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999988743
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.0086 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=8.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|.+|+|||++++.+...
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.017 Score=44.98 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=18.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+-|+|++|+||||+++.+. ++
T Consensus 6 IgitG~igSGKStv~~~l~-~~ 26 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DL 26 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HT
T ss_pred EEEECCCcCCHHHHHHHHH-HC
Confidence 4699999999999999875 44
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.038 Score=44.94 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
++...++|.|++|+|||+++..+++..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 445569999999999999999999865
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.84 E-value=0.014 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
+.+-|.|+|++||||+++++.+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEE
T ss_pred CeEEEECCCCCCHHHHHHHHhC
Confidence 4588999999999999998854
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.84 E-value=0.047 Score=50.56 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=39.7
Q ss_pred hhhhhCCCCCccccccHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 51 WVEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|+.....++.-+--.+ .+...++..+....+++.|++|+|||..++.+.+.+
T Consensus 92 ~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 92 MVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 44566655555554442222 455666667766679999999999999999998877
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.038 Score=45.13 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+..++++|.-|+||||++..+|..+.
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA~~lA 33 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATAIRLA 33 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHH
Confidence 34478999999999999999999884
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.017 Score=43.47 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.|.|.||+||||+++++.+.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999754
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=93.64 E-value=0.015 Score=46.29 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+-|.||.|+||||+++++...+
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999997765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.0094 Score=45.15 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.6
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~ 104 (345)
.+.+.|.|.|++|||+|.+++..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34599999999999999988843
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.41 E-value=0.022 Score=45.20 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+-|+|+.|+||||+|+.++...
T Consensus 4 IgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.39 E-value=0.0039 Score=49.30 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=18.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
..+|.|++|+||||+++++....
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred eEEEECCCCccHHHHHHhhccHh
Confidence 36899999999999999986543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.33 E-value=0.021 Score=43.71 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=17.4
Q ss_pred EEEeCCCCCCHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAI 102 (345)
Q Consensus 85 lll~G~~G~GKT~la~~l 102 (345)
++|.|.+|+|||++++.+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.32 E-value=0.023 Score=43.01 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+.|.|.+|+||||++.++...
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 789999999999999999754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.028 Score=42.29 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+...-
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999887754
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=93.20 E-value=0.07 Score=49.44 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=37.9
Q ss_pred hhhhCCCCCccccccHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 52 VEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+.....++.-+--.+ .+...++..+....+++.|++|+|||..++.+.+.+
T Consensus 59 ~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 59 IDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp HHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455544444444332222 455666666766679999999999999999998887
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=93.09 E-value=0.027 Score=44.75 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+-|.||.|+||||+.++++..+
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998776
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.021 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+-|.||.|+||||+.+.++..
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999873
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=92.96 E-value=0.078 Score=49.35 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=38.1
Q ss_pred hhhhhCCCCCccccccHHH--HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 51 WVEKYRPKQVKDVAHQEEV--VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~--~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+...|+.....++.-+--. -.+...+...+....+++.|++|+|||..++.+.+.+
T Consensus 61 ~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l 118 (730)
T d1w7ja2 61 IINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF 118 (730)
T ss_dssp HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445554444444433222 2455666666776679999999999999999998876
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.92 E-value=0.35 Score=38.67 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.|+.+.|..|+||||++.++....
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHc
Confidence 478899999999999999997654
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=92.90 E-value=0.077 Score=49.78 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred hhhCCCCCccccccHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 53 EKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+.....++.-+--.+ .+...++..+....++++|++|+|||..++.+.+.+
T Consensus 92 ~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 92 LAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp HHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344444444444332222 456666677776679999999999999999998887
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.87 E-value=0.023 Score=45.61 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+-|.||.|+||||++++++..+
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 47899999999999999998765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.76 E-value=0.0081 Score=44.42 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|.||+|||++++++..+-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998763
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=92.65 E-value=0.075 Score=49.83 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=38.1
Q ss_pred hhhCCCCCccccccHHH--HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 53 EKYRPKQVKDVAHQEEV--VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~--~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|+.....++.-+--. -.+...+...+....++++|++|+|||..++.+.+.+.
T Consensus 90 ~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 90 AKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp HHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45554444444433222 25666666777666699999999999999999998873
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.022 Score=44.85 Aligned_cols=24 Identities=33% Similarity=0.319 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
|..+|+|.-|+||||+++.+.+..
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEeeCCCCCHHHHHHHHHhcC
Confidence 456999999999999999998863
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.52 E-value=0.032 Score=43.73 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|.|.+|+|||++++.+...
T Consensus 9 illlG~~~vGKTsll~~~~~~ 29 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMRIL 29 (221)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999988654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.012 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+|+||.|+|||+++.+|.-.+.+
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L~g 50 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTALIP 50 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999999999988743
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.32 E-value=0.3 Score=37.95 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
|.+-+.|.+++|||||+.+|....
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCccHHHHHHHHHhhc
Confidence 348899999999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.25 E-value=0.036 Score=42.19 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|.+|+|||++++.+...-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999997654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.04 Score=47.84 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
.|+++.|++|+|||++++.+..++... +..++.++..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~---g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEET
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhC---CCCEEEEeCC
Confidence 479999999999999998777665322 3345555543
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.61 E-value=0.76 Score=35.52 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+|.=+.|+|||..+-+++..+.
T Consensus 33 g~iLaDe~GlGKT~~~i~~~~~~~ 56 (230)
T d1z63a1 33 GICLADDMGLGKTLQTIAVFSDAK 56 (230)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCChHHHHHHhhhhhh
Confidence 478888999999998888877663
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.54 E-value=0.8 Score=34.79 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
|+.+.|.++.|||||+.+|....
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Confidence 47889999999999999997553
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.41 E-value=0.052 Score=41.06 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|..|+|||++++.+...-
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~ 26 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIH 26 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 7999999999999999886553
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.26 E-value=0.92 Score=36.43 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=20.8
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....+.+.|++|+|||+++..++...
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~~~ 92 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTIINQ 92 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhH
Confidence 33459999999999999988777653
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=91.19 E-value=0.037 Score=46.19 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
|.|-|+-|+||||+++.+++.+.
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999873
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=91.19 E-value=0.081 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=25.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
+.++|.-|+||||++-.++..+... +..+.-+++
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~LA~~---G~rVllID~ 37 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTSGLHAM---GKTIMVVGC 37 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEEE
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhC---CCcEEEEec
Confidence 5679999999999999999998532 334444444
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=90.99 E-value=0.3 Score=36.51 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.9
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
+|++|+.++|||..|..++.
T Consensus 2 iLVtGGarSGKS~~AE~l~~ 21 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHHh
Confidence 58999999999999998863
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.84 E-value=0.2 Score=40.30 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
++...+.++|++|+|||+++..+++..
T Consensus 66 gkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 66 AKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 344459999999999999999998875
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.48 E-value=0.073 Score=45.74 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.1
Q ss_pred cE-EEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HM-LFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~l-ll~G~~G~GKT~la~~la~~l 106 (345)
++ +|+||.|+|||+++.|+.-.+
T Consensus 26 ~l~~i~G~NGsGKS~ileAi~~~l 49 (427)
T d1w1wa_ 26 NFTSIIGPNGSGKSNMMDAISFVL 49 (427)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 45 899999999999999997654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.47 E-value=0.048 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
-+|+||.|+|||++..|+.-.+
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKWVF 48 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4999999999999999996544
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.28 E-value=0.82 Score=36.56 Aligned_cols=25 Identities=28% Similarity=0.225 Sum_probs=19.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+|++|+|||+++..+....
T Consensus 67 GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 67 GQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred CceEeeccCCCCChHHHHHHHHhhh
Confidence 3458999999999999998765543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.18 E-value=0.2 Score=42.86 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=19.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
-++.+.|.||+|||++++++..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G 78 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRG 78 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999974
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=89.96 E-value=0.4 Score=40.95 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
|+.+++.+.+.+..+. ...+|.|-+|+|||.++..+++.. +.+++.+...
T Consensus 16 QP~aI~~l~~~l~~g~-~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n 65 (413)
T d1t5la1 16 QPQAIAKLVDGLRRGV-KHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHN 65 (413)
T ss_dssp HHHHHHHHHHHHHHTC-SEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSS
T ss_pred CHHHHHHHHHHHhcCC-CcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCC
Confidence 6888999999998764 457899999999999999999987 4555555543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.91 E-value=1.9 Score=32.33 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
|+.+.|-++.|||||+.++...+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 47899999999999999997643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.85 E-value=1.9 Score=35.55 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...|+.+.|..|.||||++.++....
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~ 41 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRA 41 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHC
Confidence 45679999999999999999998655
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.099 Score=40.30 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.8
Q ss_pred cEEEeCC-CCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGP-PGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~-~G~GKT~la~~la~~l~~ 108 (345)
.++++|. +|+|||+++-.|+..+..
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~aLa~ 28 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQAAKA 28 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHH
Confidence 4789999 599999999999999843
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.18 E-value=0.55 Score=37.66 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..|+-+.|..|+|||||+.++....
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~ 30 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYT 30 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998765
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.17 Score=41.98 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=28.1
Q ss_pred CCCCccccc----cHHHHH----HHHHHHHcCCCCcEEEeCCCCCCHHHHH
Q 019145 57 PKQVKDVAH----QEEVVR----VLTNTLETANCPHMLFYGPPGTGKTTTA 99 (345)
Q Consensus 57 p~~~~~~~g----~~~~~~----~l~~~l~~~~~~~lll~G~~G~GKT~la 99 (345)
++.|+.+.+ |+++.. .+.+.+..|....++-||++|+|||++.
T Consensus 43 ~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 43 PYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred eeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceec
Confidence 345655543 455443 3344445566556899999999999987
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=88.35 E-value=0.13 Score=41.71 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++|.-|+||||++-.+|..+.
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA 27 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999988874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.19 E-value=0.13 Score=38.49 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
++-+.|.|++|||||++++.+
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 478999999999999999975
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.56 E-value=0.096 Score=42.94 Aligned_cols=18 Identities=44% Similarity=0.704 Sum_probs=15.4
Q ss_pred cEEEeCCCCCCHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~ 101 (345)
..+|+|.+|||||||...
T Consensus 16 valffGLSGTGKTTLs~~ 33 (318)
T d1j3ba1 16 VAVFFGLSGTGKTTLSTD 33 (318)
T ss_dssp EEEEEECTTSCHHHHTCB
T ss_pred EEEEEccCCCCccccccC
Confidence 369999999999998754
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.30 E-value=0.23 Score=34.23 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=21.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
++|+|-+|+||+++|+++...++.
T Consensus 9 i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 9 IVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999988844
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.79 E-value=0.13 Score=41.90 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.4
Q ss_pred EecCCCHHHHHHHHHHHHHHhCC
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~ 232 (345)
.|-+.....-.++|..+.++.+.
T Consensus 185 PFl~~~p~~ya~lL~~ki~~~~~ 207 (313)
T d2olra1 185 AFLSLHPTQYAEVLVKRMQAAGA 207 (313)
T ss_dssp GGCSSCHHHHHHHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHHHHHHhcCC
Confidence 56677788888888888877654
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=86.64 E-value=2.2 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.+|.=+.|+|||..+-++...+
T Consensus 80 ~g~iLaDemGlGKT~qaia~l~~l 103 (298)
T d1z3ix2 80 YGCIMADEMGLGKTLQCITLIWTL 103 (298)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCHHHHHHHHHHHH
Confidence 348888899999997766555444
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Probab=86.47 E-value=0.24 Score=41.53 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCCccccc----cHHHHHH----HHHHHHcCCCCcEEEeCCCCCCHHHHH
Q 019145 58 KQVKDVAH----QEEVVRV----LTNTLETANCPHMLFYGPPGTGKTTTA 99 (345)
Q Consensus 58 ~~~~~~~g----~~~~~~~----l~~~l~~~~~~~lll~G~~G~GKT~la 99 (345)
+.|+.+.+ |+++... +...+..|....++-||++|+|||+++
T Consensus 48 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 48 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp EECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred EECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeEEecccCCCCcceee
Confidence 34554543 4555433 333334555455899999999999886
|
| >d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: TBP-associated factors, TAFs domain: TAF(II)62 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.15 E-value=1.5 Score=26.60 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHhhC
Q 019145 222 RVLHICNEEGLN-LDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278 (345)
Q Consensus 222 ~l~~~~~~~~~~-i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~ 278 (345)
-++.+++.-|+. +++++...|++....-++.++....+..... ...+|.+||..++.
T Consensus 11 sik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALk 69 (70)
T d1tafb_ 11 SMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHc
Confidence 345556888994 9999999999988877887777665555444 45699999987653
|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]
Probab=85.82 E-value=0.27 Score=41.10 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.1
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHH
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTA 99 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la 99 (345)
+...+..|....++-||.+|+|||++.
T Consensus 72 lv~~~l~G~n~~i~aYGqtgSGKTyTm 98 (345)
T d1x88a1 72 ILDEVIMGYNCTIFAYGQTGTGKTFTM 98 (345)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhccCCceEEeeeeccccceEEe
Confidence 334445566555899999999999886
|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif1a [TaxId: 10090]
Probab=85.35 E-value=0.32 Score=40.63 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHH
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTA 99 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la 99 (345)
.+...+..|....++-||.+|+|||+++
T Consensus 77 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 104 (349)
T d2zfia1 77 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 104 (349)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhccCceeeeeccCCCCCceee
Confidence 3444455566556899999999999987
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=85.17 E-value=1.3 Score=37.65 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
|+.+++.+.+.+..+. ..+.|.|.+|++|+.++.++++.. +.+++.+..
T Consensus 13 qp~aI~~l~~~L~~g~-~~~~L~GlsgS~ka~~~A~l~~~~------~rp~LvVt~ 61 (408)
T d1c4oa1 13 QPKAIAGLVEALRDGE-RFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAP 61 (408)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEES
T ss_pred CHHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHHHHHHHh------CCCEEEEeC
Confidence 5777899999998654 347999999999999999999988 445555543
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| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.16 E-value=0.18 Score=41.24 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=15.1
Q ss_pred EEEeCCCCCCHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALA 101 (345)
Q Consensus 85 lll~G~~G~GKT~la~~ 101 (345)
.+|+|-+|||||||...
T Consensus 17 alfFGLSGTGKTTLs~d 33 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLSAD 33 (323)
T ss_dssp EEEECCTTSSHHHHHCC
T ss_pred EEEEccCCCCcccceeC
Confidence 59999999999999843
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.58 E-value=0.22 Score=41.28 Aligned_cols=25 Identities=36% Similarity=0.475 Sum_probs=18.9
Q ss_pred HHHcCCCCcEEEeCCCCCCHHHHHH
Q 019145 76 TLETANCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 76 ~l~~~~~~~lll~G~~G~GKT~la~ 100 (345)
.+..|....++-||.+|+|||++..
T Consensus 79 ~~~~G~n~~i~aYGqTGSGKTyTm~ 103 (330)
T d1ry6a_ 79 LYENGCVCSCFAYGQTGSGKTYTML 103 (330)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred HHhcCCCeEEEeeeccccccceeee
Confidence 3444654558999999999999873
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]
Probab=84.38 E-value=0.48 Score=39.41 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCccccc----cHHHHHHHHHHHH---cCCCCcEEEeCCCCCCHHHHHH
Q 019145 59 QVKDVAH----QEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 59 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~lll~G~~G~GKT~la~ 100 (345)
.|+.+.+ |+++.+.+...+. .|....++-||.+|+|||+++.
T Consensus 53 ~FD~vf~~~~~q~~vy~~v~~~v~~~l~G~n~~i~aYGqtgSGKT~T~~ 101 (342)
T d1f9va_ 53 KFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 101 (342)
T ss_dssp EESEEECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred ecCeEeCCCCCHHHHHHHhhhhhcchhcccccceeeeeccCCccccccc
Confidence 4555543 5666666655443 3443347889999999998873
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| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.79 E-value=0.38 Score=37.17 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=24.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 86 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
+..|..|+||||++..+|..+... +..+..+++
T Consensus 6 v~s~KGGvGKTtia~nlA~~la~~---g~~VlliD~ 38 (232)
T d1hyqa_ 6 VASGKGGTGKTTITANLGVALAQL---GHDVTIVDA 38 (232)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EECCCCCChHHHHHHHHHHHHHhC---CCCEEEEeC
Confidence 566889999999999999988432 334544444
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=83.40 E-value=0.27 Score=41.39 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCCccccc----cHHHHHH----HHHHHHcCCCCcEEEeCCCCCCHHHHHH
Q 019145 58 KQVKDVAH----QEEVVRV----LTNTLETANCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 58 ~~~~~~~g----~~~~~~~----l~~~l~~~~~~~lll~G~~G~GKT~la~ 100 (345)
+.|+.+.+ |+++.+. +...+..|....++-||.+|+|||++..
T Consensus 82 f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~ 132 (362)
T d1v8ka_ 82 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 132 (362)
T ss_dssp EECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred EeCCeecCCCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeee
Confidence 34555543 4555533 3334445654457899999999999873
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| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.17 E-value=8.6 Score=29.12 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++.+.|-...||||++.+|....
T Consensus 11 ~i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 11 RFLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 37899999999999999997665
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| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=82.04 E-value=0.38 Score=40.44 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=22.6
Q ss_pred cHHHHHHH---HHHHHcCCCCcEEEeCCCCCCHHHHH
Q 019145 66 QEEVVRVL---TNTLETANCPHMLFYGPPGTGKTTTA 99 (345)
Q Consensus 66 ~~~~~~~l---~~~l~~~~~~~lll~G~~G~GKT~la 99 (345)
|.++...+ ...+..|....++-||++|+|||++.
T Consensus 56 q~~vy~~v~~lv~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 56 QDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHHTTTHHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceeeeccccCCCCccccc
Confidence 45555433 33334455445899999999999986
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| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.60 E-value=0.58 Score=39.31 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=22.6
Q ss_pred cHHHHHH---HHHHHHcCCCCcEEEeCCCCCCHHHHH
Q 019145 66 QEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTA 99 (345)
Q Consensus 66 ~~~~~~~---l~~~l~~~~~~~lll~G~~G~GKT~la 99 (345)
|+++.+. +...+..|....++-||++|+|||++.
T Consensus 106 Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm 142 (368)
T d2ncda_ 106 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 142 (368)
T ss_dssp HHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred ccchHHHHHHHHHHHhcccceeEEeeccCCCccceEe
Confidence 4555433 333344565455899999999999875
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| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.50 E-value=0.52 Score=36.39 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=23.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 86 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
+..+..|+||||++..+|..+.. . +..+.-+++
T Consensus 7 v~~~kGGvGKTtia~nLA~~la~-~--g~~VlliD~ 39 (237)
T d1g3qa_ 7 IVSGKGGTGKTTVTANLSVALGD-R--GRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHh-C--CCCEEEEeC
Confidence 44477999999999999998843 2 334555543
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