Citrus Sinensis ID: 019166

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK
ccccccccccccEEEcccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEccccccccccccccccccccEEEEccccccccEEEcccccEEEEEEcccccHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEccEEccccccccccccccccccccccccccccccEEEEcccccEEcccccccccEEEEEccHHHHHHHHHccccccccccccccccEEccccccccEEcccccccccccc
cEEEEcccccccEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEccHcccccccccEcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccEEEEEEcccccccEEEEEcccccccccEEccccccEEEEEEHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHcccEEEEEEccEEcccccccccHHHccccccccccccEEEcccEEEEcccccEEEcccccccEEEEEEEcHHHHHHHHHccccccccccccEEEEEEcccccccEEEEccccccccccc
maivasdaplfaevdmgadssaptvRATVVQAStifydtpatlGKAERLLAEAAGygsqlvvfpeafiggyprganfgvtignrtaKGKEEFRKYHAsaidvpgpeVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFfdsqghflgkhrKIMPTALERIIWgfgdgstipvfetpigkigaaICWENRMPLLRTAMYAKGIEiycaptadsREVWQASMTHIALEGGcfvlsanqfcrrkdyppppeyefsgteqdltpdsivcaggsviispsgsvlagpnydgealisADLDLGEIArakfdfdvvghysrpevlslvvrdhpatpvtftsasaktegshk
MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHAsaidvpgpeVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLslvvrdhpatpvtftsasaktegshk
MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAggsviispsgsvLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK
***********************TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKD****************TPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHP******************
************************VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPAT****************
MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFT***********
MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSA*********
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MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
Q42965349 Bifunctional nitrilase/ni N/A no 1.0 0.988 0.891 0.0
Q42966348 Bifunctional nitrilase/ni N/A no 0.988 0.979 0.897 0.0
Q6H849362 Bifunctional nitrilase/ni yes no 0.985 0.939 0.794 1e-163
P46011355 Bifunctional nitrilase/ni yes no 0.968 0.940 0.814 1e-162
P32962339 Nitrilase 2 OS=Arabidopsi no no 0.933 0.949 0.695 1e-133
P46010346 Nitrilase 3 OS=Arabidopsi no no 0.942 0.939 0.668 1e-130
P32961346 Nitrilase 1 OS=Arabidopsi no no 0.921 0.919 0.669 1e-127
P40447199 Putative nitrilase-like p yes no 0.515 0.894 0.538 1e-51
P82605339 Nitrilase OS=Bacillus sp. N/A no 0.910 0.926 0.345 9e-43
Q03217366 Aliphatic nitrilase OS=Rh N/A no 0.860 0.811 0.349 5e-42
>sp|Q42965|NRL4A_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1 Back     alignment and function desciption
 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/349 (89%), Positives = 330/349 (94%), Gaps = 4/349 (1%)

Query: 1   MAIV----ASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGY 56
           MA+V     ++ PLFAEVDMG +SS PTVRATVVQASTIFYDTPATL KAERLLAEAA Y
Sbjct: 1   MALVPTPAVNEGPLFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLVKAERLLAEAASY 60

Query: 57  GSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGK 116
           G+QLVVFPEAFIGGYPRG+ FGV+IGNRTAKGKEEFRKYHASAIDVPGPEV+RLAAMAGK
Sbjct: 61  GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPGPEVDRLAAMAGK 120

Query: 117 YKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFET 176
           YKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPV++T
Sbjct: 121 YKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVYDT 180

Query: 177 PIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSAN 236
           P+GKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSR+VWQASMTHIALEGGCFVLSAN
Sbjct: 181 PLGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSAN 240

Query: 237 QFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLD 296
           QFCRRKDYPPPPEY FSGTE+DLTPDSIVCAGGSVIISPSG+VLAGPNY GEALISADLD
Sbjct: 241 QFCRRKDYPPPPEYVFSGTEEDLTPDSIVCAGGSVIISPSGAVLAGPNYVGEALISADLD 300

Query: 297 LGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK 345
           LGEIARAKFDFDVVGHY+RPEVLSL+VRDH  +PV+FTS S+K E S K
Sbjct: 301 LGEIARAKFDFDVVGHYARPEVLSLIVRDHAVSPVSFTSTSSKAESSPK 349
Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.
Nicotiana tabacum (taxid: 4097)
EC: 3EC: .EC: 5EC: .EC: 5EC: .EC: 4
>sp|Q42966|NRL4B_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1 Back     alignment and function description
>sp|Q6H849|NRL4_ORYSJ Bifunctional nitrilase/nitrile hydratase NIT4 OS=Oryza sativa subsp. japonica GN=NIT4 PE=2 SV=1 Back     alignment and function description
>sp|P46011|NRL4_ARATH Bifunctional nitrilase/nitrile hydratase NIT4 OS=Arabidopsis thaliana GN=NIT4 PE=1 SV=1 Back     alignment and function description
>sp|P32962|NRL2_ARATH Nitrilase 2 OS=Arabidopsis thaliana GN=NIT2 PE=1 SV=1 Back     alignment and function description
>sp|P46010|NRL3_ARATH Nitrilase 3 OS=Arabidopsis thaliana GN=NIT3 PE=1 SV=1 Back     alignment and function description
>sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1 PE=1 SV=2 Back     alignment and function description
>sp|P40447|NIT1_YEAST Putative nitrilase-like protein NIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIT1 PE=5 SV=1 Back     alignment and function description
>sp|P82605|NRL_BACSX Nitrilase OS=Bacillus sp. (strain OxB-1) GN=nit PE=1 SV=2 Back     alignment and function description
>sp|Q03217|NRL2_RHORH Aliphatic nitrilase OS=Rhodococcus rhodochrous GN=nitA PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
225464870347 PREDICTED: bifunctional nitrilase/nitril 0.997 0.991 0.893 0.0
3914163349 RecName: Full=Bifunctional nitrilase/nit 1.0 0.988 0.891 0.0
356539229350 PREDICTED: bifunctional nitrilase/nitril 0.985 0.971 0.888 0.0
75221395348 RecName: Full=Bifunctional nitrilase/nit 0.988 0.979 0.897 0.0
308943808362 nitrilase [Camellia sinensis] 1.0 0.953 0.879 0.0
449443470350 PREDICTED: bifunctional nitrilase/nitril 1.0 0.985 0.876 1e-180
47606796349 nitrilase 4A [Lupinus angustifolius] gi| 1.0 0.988 0.862 1e-179
255565735351 Nitrilase, putative [Ricinus communis] g 0.985 0.968 0.870 1e-179
359806988350 uncharacterized protein LOC100810230 [Gl 0.985 0.971 0.873 1e-179
388506412346 unknown [Lotus japonicus] 0.971 0.968 0.877 1e-178
>gi|225464870|ref|XP_002272837.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/348 (89%), Positives = 333/348 (95%), Gaps = 4/348 (1%)

Query: 1   MAIV---ASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYG 57
           MA++    +D PLFAEVDMGADSSAPTVRATVVQAST+FYDTPATL KAERLLAEA+ YG
Sbjct: 1   MALIPATVNDRPLFAEVDMGADSSAPTVRATVVQASTVFYDTPATLDKAERLLAEASSYG 60

Query: 58  SQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKY 117
           SQLVVFPEAFIGGYPRG+NFGVTIGNRTAKG+E+FRKYHA+AIDVPGPEV+RLAAMAGKY
Sbjct: 61  SQLVVFPEAFIGGYPRGSNFGVTIGNRTAKGREDFRKYHAAAIDVPGPEVDRLAAMAGKY 120

Query: 118 KVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETP 177
           KVYLVMGVIERDGYTLYCTVLFFDSQGH+LGKHRK+MPTALERIIWGFGDGSTIPV+ETP
Sbjct: 121 KVYLVMGVIERDGYTLYCTVLFFDSQGHYLGKHRKVMPTALERIIWGFGDGSTIPVYETP 180

Query: 178 IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQ 237
           IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTAD+R++WQ+SMTHIALEGGCFVLSANQ
Sbjct: 181 IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADARDIWQSSMTHIALEGGCFVLSANQ 240

Query: 238 FCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDL 297
           FCRRKDYPPPPEYEFSG + DLTPDS+VCAGGSVIISPSG+VLAGPNYDGEALISADLDL
Sbjct: 241 FCRRKDYPPPPEYEFSGAD-DLTPDSVVCAGGSVIISPSGTVLAGPNYDGEALISADLDL 299

Query: 298 GEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK 345
           GEIARAKFDFDVVGHYSRPEVLSLVV+D+P  PVTFTSAS KTE   K
Sbjct: 300 GEIARAKFDFDVVGHYSRPEVLSLVVKDNPTKPVTFTSASVKTEDFQK 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|3914163|sp|Q42965.1|NRL4A_TOBAC RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4A; Short=TNIT4A; AltName: Full=Cyanoalanine nitrilase A; AltName: Full=Nitrilase 4A gi|1171482|dbj|BAA09645.1| nitrilase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356539229|ref|XP_003538102.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like [Glycine max] Back     alignment and taxonomy information
>gi|75221395|sp|Q42966.1|NRL4B_TOBAC RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4B; Short=TNIT4B; AltName: Full=Cyanoalanine nitrilase B; AltName: Full=Nitrilase 4B gi|1181615|dbj|BAA11770.1| nitrilase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|308943808|gb|ADO51750.1| nitrilase [Camellia sinensis] Back     alignment and taxonomy information
>gi|449443470|ref|XP_004139500.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|47606796|gb|AAT36331.1| nitrilase 4A [Lupinus angustifolius] gi|79082433|gb|ABB51979.1| nitrilase 4A [Lupinus angustifolius] Back     alignment and taxonomy information
>gi|255565735|ref|XP_002523857.1| Nitrilase, putative [Ricinus communis] gi|223536945|gb|EEF38583.1| Nitrilase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359806988|ref|NP_001241587.1| uncharacterized protein LOC100810230 [Glycine max] gi|255636059|gb|ACU18374.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388506412|gb|AFK41272.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:2176377355 NIT4 "nitrilase 4" [Arabidopsi 0.968 0.940 0.787 3.7e-142
TAIR|locus:2095735339 NIT2 "nitrilase 2" [Arabidopsi 0.933 0.949 0.664 4.4e-116
TAIR|locus:2095700346 NIT3 "nitrilase 3" [Arabidopsi 0.942 0.939 0.638 1.9e-113
TAIR|locus:2095690346 NIT1 "nitrilase 1" [Arabidopsi 0.921 0.919 0.638 8.7e-111
WB|WBGene00014206305 nit-1 [Caenorhabditis elegans 0.869 0.983 0.464 6.5e-74
UNIPROTKB|Q4KCL8306 PFL_2909 "Nitrilase family pro 0.823 0.928 0.508 1.6e-72
UNIPROTKB|G4N9H1344 MGG_03280 "Nitrilase 2" [Magna 0.634 0.636 0.354 3.3e-49
SGD|S000001426199 NIT1 "Nitrilase" [Saccharomyce 0.515 0.894 0.538 6.7e-49
ASPGD|ASPL0000068634347 AN7367 [Emericella nidulans (t 0.646 0.642 0.388 1.2e-47
TIGR_CMR|SPO_A0114344 SPO_A0114 "nitrilase family pr 0.907 0.909 0.321 4e-35
TAIR|locus:2176377 NIT4 "nitrilase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 263/334 (78%), Positives = 288/334 (86%)

Query:    10 LFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIG 69
             +F E+DM A  S+  VRATVVQAST+FYDTPATL KAERLL+EAA  GSQLVVFPEAFIG
Sbjct:    21 IFPEIDMSAGDSSSIVRATVVQASTVFYDTPATLDKAERLLSEAAENGSQLVVFPEAFIG 80

Query:    70 GYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERD 129
             GYPRG+ F + IG+RTAKG+++FRKYHASAIDVPGPEVERLA MA KYKVYLVMGVIER+
Sbjct:    81 GYPRGSTFELAIGSRTAKGRDDFRKYHASAIDVPGPEVERLALMAKKYKVYLVMGVIERE 140

Query:   130 GYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWEN 189
             GYTLYCTVLFFDSQG FLGKHRK+MPTALER IWGFGDGSTIPVF+TPIGKIGAAICWEN
Sbjct:   141 GYTLYCTVLFFDSQGLFLGKHRKLMPTALERCIWGFGDGSTIPVFDTPIGKIGAAICWEN 200

Query:   190 RMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPE 249
             RMP LRTAMYAKGIEIYCAPTADSRE W ASMTHIALEGGCFVLSANQFCRRKDYP PPE
Sbjct:   201 RMPSLRTAMYAKGIEIYCAPTADSRETWLASMTHIALEGGCFVLSANQFCRRKDYPSPPE 260

Query:   250 YEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDV 309
             Y FSG+E+ LTPDS+VCA            LAGPNY GEALI+ADLDLG+IARAKFDFDV
Sbjct:   261 YMFSGSEESLTPDSVVCAGGSSIISPLGIVLAGPNYRGEALITADLDLGDIARAKFDFDV 320

Query:   310 VGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGS 343
             VGHYSRPEV SL +R+HP   V+F ++    + S
Sbjct:   321 VGHYSRPEVFSLNIREHPRKAVSFKTSKVMEDES 354
GO:0005886 "plasma membrane" evidence=ISM
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA
GO:0000257 "nitrilase activity" evidence=IDA
GO:0018822 "nitrile hydratase activity" evidence=IDA
GO:0019499 "cyanide metabolic process" evidence=IEP
GO:0047427 "cyanoalanine nitrilase activity" evidence=IDA
GO:0047558 "3-cyanoalanine hydratase activity" evidence=IDA
GO:0051410 "detoxification of nitrogen compound" evidence=IEP
GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA
TAIR|locus:2095735 NIT2 "nitrilase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095700 NIT3 "nitrilase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095690 NIT1 "nitrilase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00014206 nit-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KCL8 PFL_2909 "Nitrilase family protein" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|G4N9H1 MGG_03280 "Nitrilase 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000001426 NIT1 "Nitrilase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068634 AN7367 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0114 SPO_A0114 "nitrilase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q42965NRL4A_TOBAC3, ., 5, ., 5, ., 40.89111.00.9885N/Ano
Q42966NRL4B_TOBAC3, ., 5, ., 5, ., 40.89760.98840.9798N/Ano
Q6H849NRL4_ORYSJ3, ., 5, ., 5, ., 40.79420.98550.9392yesno
P46011NRL4_ARATH3, ., 5, ., 5, ., 40.81430.96810.9408yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.5.40.994
3rd Layer3.5.50.998
3rd Layer3.5.5.10.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
NIT1
nitrilase 1 (EC-3.5.5.1) (348 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.1323.1
cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa)
     •  0.899
gw1.I.2970.1
hypothetical protein (547 aa)
     •  0.899
gw1.145.154.1
hypothetical protein (564 aa)
     •  0.899
grail3.0039007102
RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa)
     •  0.899
fgenesh4_pg.C_LG_V000227
hypothetical protein (624 aa)
     •  0.899
gw1.XIV.3012.1
aspartate transaminase (EC-2.6.1.1) (403 aa)
     •  0.800
gw1.X.6258.1
hypothetical protein (497 aa)
     •  0.800
gw1.X.4202.1
annotation not avaliable (214 aa)
     •  0.800
gw1.X.3427.1
hypothetical protein (424 aa)
     •  0.800
gw1.VI.2755.1
aspartate transaminase (EC-2.6.1.1) (397 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
PLN02504346 PLN02504, PLN02504, nitrilase 0.0
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 1e-157
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 2e-73
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 1e-57
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 6e-54
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 4e-45
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 2e-33
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 1e-31
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 3e-31
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 1e-30
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 2e-28
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 6e-27
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 7e-26
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 9e-24
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 1e-22
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 1e-22
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 1e-21
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 4e-21
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 5e-20
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 1e-19
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 1e-18
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 3e-15
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 9e-15
PLN02798286 PLN02798, PLN02798, nitrilase 4e-13
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 2e-12
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 7e-11
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 5e-09
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 8e-09
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 3e-07
PRK13287333 PRK13287, amiF, formamidase; Provisional 1e-06
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 4e-05
cd07567299 cd07567, biotinidase_like, biotinidase and vanins 5e-04
PRK13286345 PRK13286, amiE, acylamide amidohydrolase; Provisio 0.001
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 0.002
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information 
 Score =  708 bits (1829), Expect = 0.0
 Identities = 288/345 (83%), Positives = 314/345 (91%)

Query: 1   MAIVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQL 60
           M+  A    +  EVDMGAD+S+ TVRATVVQAST+FYDTPATL KAERL+AEAA YGSQL
Sbjct: 1   MSSTADMPAVEPEVDMGADASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQL 60

Query: 61  VVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVY 120
           VVFPEAFIGGYPRG+ FG+ IG+R+ KG+E+FRKYHASAIDVPGPEV+RLAAMAGKYKVY
Sbjct: 61  VVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDVPGPEVDRLAAMAGKYKVY 120

Query: 121 LVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGK 180
           LVMGVIERDGYTLYCTVLFFD QG +LGKHRK+MPTALER+IWGFGDGSTIPV++TPIGK
Sbjct: 121 LVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTALERLIWGFGDGSTIPVYDTPIGK 180

Query: 181 IGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCR 240
           IGA ICWENRMPLLRTAMYAKGIEIYCAPTADSRE WQASM HIALEGGCFVLSANQFCR
Sbjct: 181 IGAVICWENRMPLLRTAMYAKGIEIYCAPTADSRETWQASMRHIALEGGCFVLSANQFCR 240

Query: 241 RKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEI 300
           RKDYPPPPEY FSGTE+DLTPDSIVCAGGSVIISPSG+VLAGPNY+GE LI+ADLDLGEI
Sbjct: 241 RKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEI 300

Query: 301 ARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK 345
           ARAKFDFDVVGHYSRP+VLSL V +HP  PVTFTS+  K E   +
Sbjct: 301 ARAKFDFDVVGHYSRPDVLSLTVNEHPLKPVTFTSSPEKAEDDSE 345

Length = 346
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|143591 cd07567, biotinidase_like, biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>gnl|CDD|237335 PRK13286, amiE, acylamide amidohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
PLN02504346 nitrilase 100.0
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
PLN02798286 nitrilase 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
PRK13287333 amiF formamidase; Provisional 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 100.0
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 100.0
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 100.0
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.97
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.96
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.93
PRK13825388 conjugal transfer protein TraB; Provisional 99.88
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 99.72
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 82.93
>PLN02504 nitrilase Back     alignment and domain information 
Probab=100.00  E-value=7.8e-60  Score=450.32  Aligned_cols=330  Identities=87%  Similarity=1.433  Sum_probs=283.4

Q ss_pred             eeecCCCCCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHH
Q 019166           13 EVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEF   92 (345)
Q Consensus        13 ~~~~~~~~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~   92 (345)
                      +|+|+.+...++||||++|+++.+.|.++|++++.+++++|+++|+|||||||++++||+.+..+...++.+.+......
T Consensus        13 ~~~~~~~~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~   92 (346)
T PLN02504         13 EVDMGADASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDF   92 (346)
T ss_pred             CccccccccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHH
Confidence            78999999989999999999998889999999999999999999999999999999999843222111122222233344


Q ss_pred             HHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCC
Q 019166           93 RKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIP  172 (345)
Q Consensus        93 ~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~  172 (345)
                      ..+.+.++..+++.++.|+++|++++++|++|+.+++++++||++++|+|+|+++++|+|+||++.|+.+|.+|.|..++
T Consensus        93 ~~~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~~E~~~f~~G~g~~~~  172 (346)
T PLN02504         93 RKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTALERLIWGFGDGSTIP  172 (346)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCcccceeeecCCCCCCc
Confidence            55666777778999999999999999999999998888899999999999999999999999999999999887777789


Q ss_pred             eEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCcc
Q 019166          173 VFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEF  252 (345)
Q Consensus       173 vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~  252 (345)
                      +|+++++|||++||||.+|||+.|.++++||||+++|++++..+|+.++++||+||+|||+.||++|....+|...+.+.
T Consensus       173 vf~~~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~  252 (346)
T PLN02504        173 VYDTPIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADSRETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLF  252 (346)
T ss_pred             eEEcCCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCCchhHHHHHHHHHHccCcEEEEecccccccccCccccccc
Confidence            99999999999999999999999999999999999999998889999999999999999999999986444443322222


Q ss_pred             CCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeeecCCCCceE
Q 019166          253 SGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVT  332 (345)
Q Consensus       253 ~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~~~~~~~~~  332 (345)
                      .|.+.+...+...|.|+|+|++|+|++++.+...++++++++||++.++..|..++++++++|||+|++.++++++.|+.
T Consensus       253 ~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~~~~~~  332 (346)
T PLN02504        253 SGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHPLKPVT  332 (346)
T ss_pred             ccccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCCCCcee
Confidence            22232223455789999999999999999887667899999999999999999999999999999999999999999999


Q ss_pred             EccCCccccC
Q 019166          333 FTSASAKTEG  342 (345)
Q Consensus       333 ~~~~~~~~~~  342 (345)
                      ......|.|.
T Consensus       333 ~~~~~~~~~~  342 (346)
T PLN02504        333 FTSSPEKAED  342 (346)
T ss_pred             eccccccccc
Confidence            8877777664

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 2e-10
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 3e-10
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 4e-10
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 8e-10
2dyu_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 4e-09
2vhh_A405 Crystal Structure Of A Pyrimidine Degrading Enzyme 5e-09
2e2k_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 5e-08
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 5e-07
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 2e-05
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 2e-05
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 2e-05
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 6e-05
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure 
Iteration: 1

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 30  VQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGK 89
           +Q S+I  D    L +A  L+ EAA  G+ +V  PE F   Y                G 
Sbjct: 11  LQVSSIKSDN---LTRACSLVREAAKQGANIVSLPECFNSPY----------------GT 51
Query: 90  EEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLG 148
             F  Y   A  +PG   ++L+ +A +  +YL+ G I E D   LY T   F   G  L 
Sbjct: 52  TYFPDY---AEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLV 108
Query: 149 KHRKIMPTALE---RIIWG----FGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAK 201
           KHRKI    ++   +I +        G +   F+TP  K+G  IC++ R   L      +
Sbjct: 109 KHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQR 168
Query: 202 GIEIYCAPTA 211
           G ++   P A
Sbjct: 169 GCQLLVYPGA 178
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned Cysteine- Glutamate-lysine Catalytic Triad Length = 334 Back     alignment and structure
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned Cysteine- Glutamate-Lysine Catalytic Triad Length = 334 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 4e-50
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1e-46
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 2e-46
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 1e-45
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 5e-45
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 2e-42
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 3e-36
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 3e-35
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 6e-35
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 6e-31
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 6e-31
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 5e-07
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 2e-04
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
 Score =  167 bits (425), Expect = 4e-50
 Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 39/281 (13%)

Query: 25  VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNR 84
           V+   VQ +    +      KAE+L+ EA+  G+QLVV PE F  GY             
Sbjct: 2   VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGY------------- 48

Query: 85  TAKGKEEFRKYHASAIDVP-GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQ 143
                E   +    A  +P G     L  +A    VY+V G  E+DG  LY + +    +
Sbjct: 49  ---NFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPR 105

Query: 144 GHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGI 203
           G  +GK+RKI     E+  +  GD     VF+    K+G  IC++   P     +  KG 
Sbjct: 106 GF-IGKYRKIHLFYREKFFFEPGDLG-FRVFDLGFMKVGVMICFDWFFPESARTLALKGA 163

Query: 204 EIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDS 263
           ++   P          +M   ALE   + ++A++                G E+ L    
Sbjct: 164 DVIAHPANLVMPYAPRAMPIRALENKVYTVTADR---------------VGEERGLK--- 205

Query: 264 IVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAK 304
               G S+I SP   VL+  +   E +  A++DL  +   +
Sbjct: 206 --FIGKSLIASPKAEVLSMASETEEEVGVAEIDLSLVRNKR 244
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=7e-55  Score=405.14  Aligned_cols=258  Identities=19%  Similarity=0.313  Sum_probs=234.5

Q ss_pred             CCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcc
Q 019166           20 SSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASA   99 (345)
Q Consensus        20 ~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   99 (345)
                      ...++||||++|+++.++|++.|++++.+++++|+++|+|||||||++++||.             +.+      +.+.+
T Consensus        16 ~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~-------------~~~------~~~~a   76 (281)
T 3p8k_A           16 PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYD-------------LEH------LNEKA   76 (281)
T ss_dssp             CTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTC-------------GGG------HHHHS
T ss_pred             ccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCC-------------hhH------HHHhh
Confidence            45568999999999988999999999999999999999999999999999998             222      23445


Q ss_pred             cCCCCHHHHHHHHHHHhcCeEEEEeeE-EeeCCeeEEEEEEECCCCceEeeeecCCCCc--cccceeccCCCCCC-CeEE
Q 019166          100 IDVPGPEVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA--LERIIWGFGDGSTI-PVFE  175 (345)
Q Consensus       100 ~~~~~~~l~~l~~~a~~~~i~iv~G~~-~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~--~E~~~f~~~~G~~~-~vf~  175 (345)
                      +..+++.++.++++|++++++|++|++ +++++++||++++++|+|++++.|+|+||++  .|..+|.  +|+.. .+|+
T Consensus        77 ~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~f~E~~~f~--~G~~~~~v~~  154 (281)
T 3p8k_A           77 DNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLT--AGEYVAEPFQ  154 (281)
T ss_dssp             EETTHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTTTTGGGTCC--CCSSCCCCEE
T ss_pred             hccCcHHHHHHHHHHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCCcCccccCc--CCCCCceeEE
Confidence            556678999999999999999999985 6678899999999999999999999999987  7998887  56676 8999


Q ss_pred             c-CCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCc
Q 019166          176 T-PIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYE  251 (345)
Q Consensus       176 ~-~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~  251 (345)
                      + +++|+|++||||++|||+.|.++.+|||+|++|++|+   ..+|+.++++||+||++||++||++|.           
T Consensus       155 ~~~~~~ig~~IC~D~~fpe~~r~~~~~Gadli~~psa~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~-----------  223 (281)
T 3p8k_A          155 LSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGF-----------  223 (281)
T ss_dssp             CTTCCEEEEEEGGGGGCTHHHHHHHHTTCCEEEEEECCBGGGHHHHHHHHHHHHHHHTSEEEEEECEEE-----------
T ss_pred             eCCCcEEEEEEecCCCCcHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHHHHHHcCCEEEEEccCcC-----------
Confidence            9 9999999999999999999999999999999999986   468999999999999999999999998           


Q ss_pred             cCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCcccee
Q 019166          252 FSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLS  320 (345)
Q Consensus       252 ~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~  320 (345)
                               .++..|+|+|+|++|+|+++++ +.+++++++++||++.+++.|..+|++. +||||+|+
T Consensus       224 ---------~~~~~~~G~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~-~rr~~lY~  281 (281)
T 3p8k_A          224 ---------DGNTEYAGHSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFK-SIKLDLYK  281 (281)
T ss_dssp             ---------CSSCEEECCCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGG-TCCTTTCC
T ss_pred             ---------CCCcEEeeeEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchh-hcChhhcC
Confidence                     4567899999999999999999 6689999999999999999999999876 79999995
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 345
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 9e-37
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 2e-34
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 7e-23
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 9e-22
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score =  132 bits (332), Expect = 9e-37
 Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 37/318 (11%)

Query: 24  TVRATVVQASTIFYDTP--ATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTI 81
            +   V Q   I         + +   +L +AA  G+  +VFPE  +  +    +F    
Sbjct: 3   QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHF---- 58

Query: 82  GNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI----ERDGYTLYCTV 137
                   +E         ++PGP V  L   A +  +   +G      E      + T 
Sbjct: 59  -------TDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTS 111

Query: 138 LFFDSQGHFLGKHRKIMPTALERII-----------WGFGDGSTIPVFETPIGKIGAAIC 186
           +  D  G  +GK+RKI     +              +        PV++    K+G  I 
Sbjct: 112 ILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIA 171

Query: 187 WENRMPLLRTAMYAKGIEIYCAPTA-DSREVWQASMTHIALEGGCFVLSANQFCRRKDYP 245
            + R P     M  +G EI C      +         H+        + A  +       
Sbjct: 172 NDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSA 231

Query: 246 PPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKF 305
                      +    ++ +  G S I++P+G ++A      + +I+A +DL      + 
Sbjct: 232 AAG--------KAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELRE 283

Query: 306 DFDVVGHYSRPEVLSLVV 323
                  + +P+   L+ 
Sbjct: 284 HIFNFKQHRQPQHYGLIA 301
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6.4e-53  Score=385.62  Aligned_cols=257  Identities=26%  Similarity=0.386  Sum_probs=230.2

Q ss_pred             eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCC-C
Q 019166           25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDV-P  103 (345)
Q Consensus        25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~  103 (345)
                      ||||++|+++.+.|++.|++++++++++|+++|+|||||||++++||..             .+...   ..+.+... .
T Consensus         2 ~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~-------------~~~~~---~~~~~~~~~~   65 (262)
T d1j31a_           2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF-------------ESREE---VFDVAQQIPE   65 (262)
T ss_dssp             EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCC-------------SSHHH---HHTTCBCTTT
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCch-------------hhhhH---hhhhhhhccc
Confidence            8999999999999999999999999999999999999999999999983             33222   22333333 4


Q ss_pred             CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeEEcCCCcEEE
Q 019166          104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGA  183 (345)
Q Consensus       104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf~~~~~rigv  183 (345)
                      ++.++.++++|+++++++++|+++++++++||+++++++ |+++..|+|+||+..|+.+|.+|. ..+.+|+++++|||+
T Consensus        66 ~~~~~~~~~~A~~~~i~i~~g~~~~~~~~~~n~~~~i~~-g~~~~~y~K~~l~~~e~~~~~~G~-~~~~v~~~~~~~ig~  143 (262)
T d1j31a_          66 GETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVGP-RGYIGKYRKIHLFYREKVFFEPGD-LGFKVFDIGFAKVGV  143 (262)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEEET-TEEEEEEECSSCCTTHHHHCCCCC-SCSCEEECSSCEEEE
T ss_pred             CHHHHHHHHhhhccCceEEeeeeecccccccccceEEEe-eeEEEEEeeeecCccCceeECCCC-CCceEEEeCCceEEE
Confidence            689999999999999999999999999999999999995 889999999999999988887543 247899999999999


Q ss_pred             EeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCC
Q 019166          184 AICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDS  263 (345)
Q Consensus       184 ~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~  263 (345)
                      +||||.+|||+.+.++.+|||++++|+++....|...+++||+||++|++++|++|.                    .++
T Consensus       144 ~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~--------------------~~~  203 (262)
T d1j31a_         144 MICFDWFFPESARTLALKGAEIIAHPANLVMPYAPRAMPIRALENRVYTITADRVGE--------------------ERG  203 (262)
T ss_dssp             CCGGGGGSHHHHHHHHHTTCSEEEEECCCCSSCHHHHHHHHHHHHTCEEEEECCCSE--------------------ETT
T ss_pred             EEehhhhhhHHHHHHHHhccccccCCcccccccchhhhhhhhhcccceEEEEecccc--------------------cCC
Confidence            999999999999999999999999999998889999999999999999999999998                    456


Q ss_pred             ccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhh--cCCCCCCCCCcccee
Q 019166          264 IVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKF--DFDVVGHYSRPEVLS  320 (345)
Q Consensus       264 ~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~--~~~~~~~~rr~~ly~  320 (345)
                      ..|.|+|+|++|+|+++++++.++++++++++|++.++..|.  .++++. +||||+|.
T Consensus       204 ~~~~G~S~i~~p~G~~l~~~~~~~e~i~~a~iDl~~~~~~r~~~~~~~~~-~rr~d~y~  261 (262)
T d1j31a_         204 LKFIGKSLIASPKAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFK-DRREEYYF  261 (262)
T ss_dssp             EECCCCCEEECTTSCEEEECCSSCCEEEEEEECHHHHHCCEEETTEETTT-TCCGGGSC
T ss_pred             ccccCCCEEEeCCCCEEEEcCCCCCEEEEEEEEcHHHHHHHHhccCCchh-hCCccccC
Confidence            789999999999999999998889999999999999998775  456655 79999996
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure