Citrus Sinensis ID: 019198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MSRRSLPFLKSLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD
ccccccccHHHHHHcccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHccEEEEcccccccccccccHHHHHHHHcccEEcccccccccccccccccccEEEEEccccccccccEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcc
ccHHHHHHHHHHcccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEHHHcccccccHHHHHHHHHHcEEEEcccccccccccccHHHHHHHHccccEEEEEEEcccccccccccccEEEEEEccccccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHcHHHccEEEEcHHHHHHHHHHHHHHHccHHHcccEcccccccHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcc
MSRRSLPFLKSLIQTrsvtymprpgdgspravtlipgdgigplVTNAVEQVMEAMHApiyfekyevhgdmkrvpQQVLDSIRKnkvclkgglktpvgggvsslNVQLRKELDLYAALVNCfnlpglptrhqnvDIVVIREntegeysglehevvPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVatkypsikyneiivdnccmqlvskpeqfdvmvtpnlygnlvsntaagiaggtgvmpgagnvgnekVVEQKKANPVALLLSSAMMlrhlqfpsFADRLETAVKRVISEEKyrtkdlgggcttQQIVDAVIANLD
MSRRSLPFLKSLIqtrsvtymprpgdgSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLkgglktpvgggvssLNVQLRKELDLYAALVNCFnlpglptrhqNVDIVVIRENTEgeysglehevvpgVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEkyrtkdlgggcttqqIVDAVIANLD
MSRRSLPFLKSLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD
******************************AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIA***
*****************************RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD
MSRRSLPFLKSLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD
****************SVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRRSLPFLKSLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q8LFC0367 Isocitrate dehydrogenase yes no 1.0 0.937 0.839 1e-178
P93032367 Isocitrate dehydrogenase no no 1.0 0.937 0.806 1e-172
O81796368 Isocitrate dehydrogenase no no 1.0 0.934 0.774 1e-168
Q54B68360 Isocitrate dehydrogenase yes no 0.895 0.855 0.530 8e-90
Q945K7374 Isocitrate dehydrogenase no no 0.915 0.842 0.494 3e-89
Q55BI2354 Isocitrate dehydrogenase no no 0.970 0.943 0.480 2e-88
O13696356 Isocitrate dehydrogenase yes no 0.968 0.935 0.477 3e-85
Q8LG77374 Isocitrate dehydrogenase no no 0.915 0.842 0.485 3e-85
O13302388 Isocitrate dehydrogenase N/A no 0.985 0.873 0.468 5e-85
Q93714358 Probable isocitrate dehyd yes no 0.930 0.893 0.479 9e-84
>sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2 Back     alignment and function desciption
 Score =  625 bits (1613), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/367 (83%), Positives = 329/367 (89%), Gaps = 23/367 (6%)

Query: 1   MSRRSLPFLKSL--------IQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVM 52
           MSRRSL  LK+L        IQTRSVTYMPRPGDG+PRAVTLIPGDGIGPLVTNAVEQVM
Sbjct: 1   MSRRSLTLLKNLARNANGSGIQTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVM 60

Query: 53  EAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD 112
           EAMHAPI+FEKY+VHG+M RVP +V++SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD
Sbjct: 61  EAMHAPIFFEKYDVHGEMSRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD 120

Query: 113 LYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERI 172
           L+A+LVNCFNLPGLPTRH+NVDIVVIRENTEGEY+GLEHEVVPGVVESLKVITKFCSERI
Sbjct: 121 LFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERI 180

Query: 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQL 232
           AKYAFEYAYLN RKKVTAVHKANIMKLADGLFLESCREVA KYPSI YNEIIVDNCCMQL
Sbjct: 181 AKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQL 240

Query: 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPG---------------AGNVGNEKV 277
           V+KPEQFDVMVTPNLYGNLV+NTAAGIAGGTGVMPG               AGNVG +K+
Sbjct: 241 VAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKI 300

Query: 278 VEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVD 337
           V + KANPVALLLSSAMMLRHLQFPSFADRLETAVK+VI+E K RTKDLGG  TTQ++VD
Sbjct: 301 VLENKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVD 360

Query: 338 AVIANLD 344
           AVIA LD
Sbjct: 361 AVIAKLD 367
Performs an essential role in the oxidative function of the citric acid cycle.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 1
>sp|P93032|IDH2_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|O81796|IDH3_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1 Back     alignment and function description
>sp|Q54B68|IDHB_DICDI Isocitrate dehydrogenase [NAD] regulatory subunit B, mitochondrial OS=Dictyostelium discoideum GN=idhB PE=3 SV=1 Back     alignment and function description
>sp|Q945K7|IDH5_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1 Back     alignment and function description
>sp|Q55BI2|IDHA_DICDI Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1 Back     alignment and function description
>sp|O13696|IDH1_SCHPO Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=idh1 PE=1 SV=1 Back     alignment and function description
>sp|Q8LG77|IDH6_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2 Back     alignment and function description
>sp|O13302|IDH1_AJECA Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulatus GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|Q93714|IDH3A_CAEEL Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2122098367 IDH1 "isocitrate dehydrogenase 1.0 0.937 0.839 7.7e-158
TAIR|locus:2827696367 IDH2 "isocitrate dehydrogenase 1.0 0.937 0.806 3.2e-152
TAIR|locus:2127993368 IDH-III "isocitrate dehydrogen 0.959 0.896 0.811 4.8e-149
DICTYBASE|DDB_G0293872360 idhB "isocitrate dehydrogenase 0.895 0.855 0.530 4.5e-82
FB|FBgn0038922370 CG6439 [Drosophila melanogaste 0.921 0.856 0.502 5.2e-81
TAIR|locus:2142604374 IDH-V "isocitrate dehydrogenas 0.915 0.842 0.497 8.5e-81
DICTYBASE|DDB_G0271344354 idhA "isocitrate dehydrogenase 0.901 0.875 0.504 6e-80
ZFIN|ZDB-GENE-040625-174383 idh3b "isocitrate dehydrogenas 0.968 0.869 0.478 6e-80
UNIPROTKB|H9L0K2385 IDH3B "Uncharacterized protein 0.906 0.810 0.496 1.2e-79
POMBASE|SPAC11G7.03356 idh1 "isocitrate dehydrogenase 0.965 0.932 0.478 1.3e-77
TAIR|locus:2122098 IDH1 "isocitrate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1538 (546.5 bits), Expect = 7.7e-158, P = 7.7e-158
 Identities = 308/367 (83%), Positives = 329/367 (89%)

Query:     1 MSRRSLPFLKSL--------IQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVM 52
             MSRRSL  LK+L        IQTRSVTYMPRPGDG+PRAVTLIPGDGIGPLVTNAVEQVM
Sbjct:     1 MSRRSLTLLKNLARNANGSGIQTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVM 60

Query:    53 EAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD 112
             EAMHAPI+FEKY+VHG+M RVP +V++SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD
Sbjct:    61 EAMHAPIFFEKYDVHGEMSRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD 120

Query:   113 LYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERI 172
             L+A+LVNCFNLPGLPTRH+NVDIVVIRENTEGEY+GLEHEVVPGVVESLKVITKFCSERI
Sbjct:   121 LFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERI 180

Query:   173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQL 232
             AKYAFEYAYLN RKKVTAVHKANIMKLADGLFLESCREVA KYPSI YNEIIVDNCCMQL
Sbjct:   181 AKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQL 240

Query:   233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPG---------------AGNVGNEKV 277
             V+KPEQFDVMVTPNLYGNLV+NTAAGIAGGTGVMPG               AGNVG +K+
Sbjct:   241 VAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKI 300

Query:   278 VEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVD 337
             V + KANPVALLLSSAMMLRHLQFPSFADRLETAVK+VI+E K RTKDLGG  TTQ++VD
Sbjct:   301 VLENKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVD 360

Query:   338 AVIANLD 344
             AVIA LD
Sbjct:   361 AVIAKLD 367
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004449 "isocitrate dehydrogenase (NAD+) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA;TAS
GO:0008152 "metabolic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006102 "isocitrate metabolic process" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IDA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2827696 IDH2 "isocitrate dehydrogenase subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127993 IDH-III "isocitrate dehydrogenase III" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293872 idhB "isocitrate dehydrogenase (NAD+) beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0038922 CG6439 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2142604 IDH-V "isocitrate dehydrogenase V" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271344 idhA "isocitrate dehydrogenase (NAD+) alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-174 idh3b "isocitrate dehydrogenase 3 (NAD+) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0K2 IDH3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPAC11G7.03 idh1 "isocitrate dehydrogenase (NAD+) subunit 1 Idh1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R678IDH3A_PONAB1, ., 1, ., 1, ., 4, 10.47120.90690.8524yesno
O29627LEU3_ARCFU1, ., 1, ., 1, ., 8, 50.39450.89530.9447yesno
O13696IDH1_SCHPO1, ., 1, ., 1, ., 4, 10.47750.96800.9353yesno
P28834IDH1_YEAST1, ., 1, ., 1, ., 4, 10.46540.91860.8777yesno
P93032IDH2_ARATH1, ., 1, ., 1, ., 4, 10.80651.00.9373nono
Q8LFC0IDH1_ARATH1, ., 1, ., 1, ., 4, 10.83921.00.9373yesno
P50455LEU3_SULTO1, ., 1, ., 1, ., 8, 50.38410.88080.8991yesno
Q5RBT4IDH3B_PONAB1, ., 1, ., 1, ., 4, 10.47120.90400.8077yesno
Q54B68IDHB_DICDI1, ., 1, ., 1, ., 4, 10.53060.89530.8555yesno
Q9UXB2LEU3_SULSO1, ., 1, ., 1, ., 8, 50.34600.85750.8779yesno
Q93714IDH3A_CAEEL1, ., 1, ., 1, ., 4, 10.47920.93020.8938yesno
O94229IDH1_KLULA1, ., 1, ., 1, ., 4, 10.49240.91860.8753yesno
Q68FX0IDH3B_RAT1, ., 1, ., 1, ., 4, 10.48030.90400.8077yesno
Q58130LEU3_METJA1, ., 1, ., 1, ., 8, 30.34950.87790.9069yesno
O77784IDH3B_BOVIN1, ., 1, ., 1, ., 4, 10.47730.90400.8077yesno
O43837IDH3B_HUMAN1, ., 1, ., 1, ., 4, 10.47730.90400.8077yesno
O81796IDH3_ARATH1, ., 1, ., 1, ., 4, 10.77441.00.9347nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
4th Layer1.1.1.850.914
4th Layer1.1.1.410.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN00123360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 0.0
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 0.0
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 1e-134
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-127
PRK08997334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 1e-113
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 1e-102
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 2e-97
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 2e-84
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 9e-83
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 4e-76
PRK00772358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 3e-70
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 4e-65
TIGR00183416 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase 9e-62
PRK03437344 PRK03437, PRK03437, 3-isopropylmalate dehydrogenas 4e-54
PRK07006409 PRK07006, PRK07006, isocitrate dehydrogenase; Revi 1e-53
TIGR02089352 TIGR02089, TTC, tartrate dehydrogenase 9e-53
PRK06451412 PRK06451, PRK06451, isocitrate dehydrogenase; Vali 4e-52
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 5e-48
PRK08194352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 9e-43
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 3e-29
PLN02329409 PLN02329, PLN02329, 3-isopropylmalate dehydrogenas 8e-28
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 5e-10
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information 
 Score =  685 bits (1768), Expect = 0.0
 Identities = 306/347 (88%), Positives = 322/347 (92%), Gaps = 15/347 (4%)

Query: 13  IQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKR 72
            Q RSVTYMPRPGDG+PRAVTLIPGDGIGPLVT AVEQVMEAMHAP+YFE+YEVHGDMK+
Sbjct: 14  AQRRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGDMKK 73

Query: 73  VPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQN 132
           VP++VL+SIR+NKVCLKGGL TPVGGGVSSLNVQLRKELDL+A+LVNCFNLPGLPTRH+N
Sbjct: 74  VPEEVLESIRRNKVCLKGGLATPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHEN 133

Query: 133 VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVH 192
           VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN RKKVTAVH
Sbjct: 134 VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVH 193

Query: 193 KANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV 252
           KANIMKLADGLFLESCREVA KYP IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV
Sbjct: 194 KANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV 253

Query: 253 SNTAAGIAGGTGVMPG---------------AGNVGNEKVVEQKKANPVALLLSSAMMLR 297
           +NTAAGIAGGTGVMPG               AGNVGNEK+VEQKKANPVALLLSSAMMLR
Sbjct: 254 ANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLR 313

Query: 298 HLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 344
           HLQFPSFADRLETAVKRVI+E KYRTKDLGG  TTQ++VDAVIANLD
Sbjct: 314 HLQFPSFADRLETAVKRVIAEGKYRTKDLGGSSTTQEVVDAVIANLD 360

Length = 360
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180792 PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215188 PLN02329, PLN02329, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-113  Score=823.70  Aligned_cols=316  Identities=46%  Similarity=0.689  Sum_probs=300.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHcC---CCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC--
Q 019198           28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMH---APIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG--   97 (344)
Q Consensus        28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~---~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~--   97 (344)
                      .+|+|+||||||||||||+++++||+++.   ++++|+++++|++     |.++|+++++.|+++|++||||+++|..  
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            46999999999999999999999999986   8999999999976     9999999999999999999999999942  


Q ss_pred             --CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc-ccccEEEEecCCceeeecccce-eeCC-EEEEEEEeeHHHHHHH
Q 019198           98 --GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH-QNVDIVVIRENTEGEYSGLEHE-VVPG-VVESLKVITKFCSERI  172 (344)
Q Consensus        98 --~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-~~vDivIvREnteG~Y~g~e~~-~~~~-va~~~~~~Tr~~~eRi  172 (344)
                        .++++.++.|||+||||||+||+|++||+++++ +++|+|||||||||+|+|.++. ..++ +++++++|||+++|||
T Consensus        82 ~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI  161 (348)
T COG0473          82 LPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSERI  161 (348)
T ss_pred             CCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHHH
Confidence              367789999999999999999999999999988 6899999999999999999884 3344 8999999999999999


Q ss_pred             HHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhh
Q 019198          173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV  252 (344)
Q Consensus       173 ar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIl  252 (344)
                      +|+|||+|++|++||||+|||+|||++|++||+++|+|++++||||+++|+|||+++||||++|++||||||+|||||||
T Consensus       162 ~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDIL  241 (348)
T COG0473         162 ARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDIL  241 (348)
T ss_pred             HHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHH
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCCccccCcccCC--------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHc
Q 019198          253 SNTAAGIAGGTGVMPGAGNVG--------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISE  318 (344)
Q Consensus       253 SDlaa~l~GglGl~pSa~nig--------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~  318 (344)
                      ||+||+|+|||||+||| |+|              ||||||||||||+|+|||++|||+|+|..++|++|++||.++|++
T Consensus       242 SD~aa~l~GslGl~PSA-nig~~~~~~lfEPvHGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~~  320 (348)
T COG0473         242 SDEAAALTGSLGLAPSA-NLGDERGPALFEPVHGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLAE  320 (348)
T ss_pred             HhHHHHhcCccccCccC-ccCCCCCCceeecCCCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            99999999999999999 998              999999999999999999999999999999999999999999996


Q ss_pred             CcccCCCCCCCCcHHHHHHHHHHhcC
Q 019198          319 EKYRTKDLGGGCTTQQIVDAVIANLD  344 (344)
Q Consensus       319 g~~~T~DlgG~~sT~e~~~aV~~~l~  344 (344)
                      +..+|+||||+++|.||+|+|+++|+
T Consensus       321 ~g~~T~Dlgg~~~T~e~~d~I~~~l~  346 (348)
T COG0473         321 GGIRTPDLGGNATTSEVGDAIAKALA  346 (348)
T ss_pred             CCCCCcccCCCccHHHHHHHHHHHHh
Confidence            32599999999999999999999873

>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3blw_A349 Yeast Isocitrate Dehydrogenase With Citrate And Amp 6e-78
3blv_A354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 2e-74
3blw_B354 Yeast Isocitrate Dehydrogenase With Citrate And Amp 2e-68
2d1c_A 496 Crystal Structure Of Tt0538 Protein From Thermus Th 2e-64
3blv_B354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 8e-63
1wpw_A336 Crystal Structure Of Ipmdh From Sulfolobus Tokodaii 3e-55
3asj_A334 Crystal Structure Of Homoisocitrate Dehydrogenase I 8e-51
1x0l_A333 Crystal Structure Of Tetrameric Homoisocitrate Dehy 9e-51
3ah3_A334 Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehyd 6e-48
3ty3_A366 Crystal Structure Of Homoisocitrate Dehydrogenase F 3e-43
2dht_A409 Crystal Structure Of Isocitrate Dehydrogenase From 1e-40
2iv0_A412 Thermal Stability Of Isocitrate Dehydrogenase From 2e-40
1iso_A416 Isocitrate Dehydrogenase: Structure Of An Engineere 5e-39
1p8f_A416 A Four Location Model To Explain The Stereospecific 9e-39
1bl5_A414 Isocitrate Dehydrogenase From E. Coli Single Turnov 9e-39
1idd_A416 Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Le 2e-38
6icd_A416 Regulation Of An Enzyme By Phosphorylation At The A 3e-38
1hj6_A416 Isocitrate Dehydrogenase S113e Mutant Complexed Wit 3e-38
1cw7_A416 Low Temperature Structure Of Wild-Type Idh Complexe 4e-38
4icd_A416 Regulation Of Isocitrate Dehydrogenase By Phosphory 4e-38
1cw1_A416 Crystal Structure Of Isocitrate Dehydrogenase Mutan 5e-38
4ajb_A416 3d Structure Of E. Coli Isocitrate Dehydrogenase K1 5e-38
1grp_A416 Regulatory And Catalytic Mechanisms In Escherichia 1e-37
1gro_A416 Regulatory And Catalytic Mechanisms In Escherichia 3e-37
2d4v_A429 Crystal Structure Of Nad Dependent Isocitrate Dehyd 4e-37
1hqs_A423 Crystal Structure Of Isocitrate Dehydrogenase From 5e-37
3dms_A427 1.65a Crystal Structure Of Isocitrate Dehydrogenase 9e-36
3u1h_A390 Crystal Structure Of Ipmdh From The Last Common Anc 4e-34
1v94_A435 Crystal Structure Of Isocitrate Dehydrogenase From 8e-34
3fmx_X364 Crystal Structure Of Tartrate Dehydrogenase From Ps 3e-33
2ayq_A366 3-Isopropylmalate Dehydrogenase From The Moderate F 1e-32
1v53_A366 The Crystal Structure Of 3-Isopropylmalate Dehydrog 1e-32
1v5b_A366 The Structure Of The Mutant, S225a And E251l, Of 3- 1e-32
1vlc_A366 Crystal Structure Of 3-isopropylmalate Dehydrogenas 3e-32
1a05_A358 Crystal Structure Of The Complex Of 3-Isopropylmala 9e-32
1gc8_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 1e-30
1idm_A343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 2e-30
3flk_A364 Crystal Structure Of Tartrate Dehydrogenase From Ps 3e-30
1wal_A345 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M21 5e-30
1osj_A345 Structure Of 3-isopropylmalate Dehydrogenase Length 5e-30
1w0d_A337 The High Resolution Structure Of Mycobacterium Tube 5e-30
1g2u_A345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 5e-30
1osi_A345 Structure Of 3-Isopropylmalate Dehydrogenase Length 5e-30
1ipd_A345 Three-Dimensional Structure Of A Highly Thermostabl 5e-30
1dr0_A346 Structure Of Modified 3-isopropylmalate Dehydrogena 6e-30
1gc9_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 7e-30
2y3z_A359 Structure Of Isopropylmalate Dehydrogenase From The 1e-29
1dpz_A349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 2e-29
1dr8_A344 Structure Of Modified 3-Isopropylmalate Dehydrogena 2e-29
1xac_A345 Chimera Isopropylmalate Dehydrogenase Between Bacil 9e-29
4iwh_A363 Crystal Structure Of A 3-isopropylmalate Dehydrogen 1e-28
3r8w_A405 Structure Of 3-Isopropylmalate Dehydrogenase Isofor 8e-27
1cnz_A363 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmon 1e-26
1cm7_A363 3-Isopropylmalate Dehydrogenase From Escherichia Co 2e-26
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 1e-25
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 3e-25
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 1e-22
3udu_A361 Crystal Structure Of Putative 3-Isopropylmalate Deh 5e-20
3udo_A361 Crystal Structure Of Putative Isopropylamlate Dehyd 2e-17
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 349 Back     alignment and structure 
Iteration: 1

 Score =  287 bits (735), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 211/333 (63%), Gaps = 17/333 (5%)
Query: 27  GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-HGDMKRVPQQVLDSIRKNK 85
           G    VTLIPGDG+G  +T++V  + EA + PI +E   +   D K    + ++S+++NK
Sbjct: 15  GGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNK 74
Query: 86  VCLKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEG 144
           + LKG   TP    G  SLNV LRK+LD+YA +    +L G+ TR  ++D++VIRENTEG
Sbjct: 75  IGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEG 134
Query: 145 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLF 204
           E+SGLEHE VPGVVESLKV+T+  +ERIA++AF++A    RK VTAVHKANIMKL DGLF
Sbjct: 135 EFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLF 194
Query: 205 LESCREVATK-YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGT 263
                E+  K YP I  + IIVDN  MQ V+KP QFDV+VTP++YG ++ N  A + GG 
Sbjct: 195 RNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGP 254
Query: 264 GVMPGAGNVGNEKVV-------------EQKKANPVALLLSSAMMLRHLQFPSFADRLET 310
           G++ GA N G +  V              Q  ANP A++LSS +ML HL    +A R+  
Sbjct: 255 GLVAGA-NFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISK 313
Query: 311 AVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
           AV   I+E K+ T+D+GG  +T    + +I  L
Sbjct: 314 AVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii Length = 336 Back     alignment and structure
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In Complex With A Designed Inhibitor Length = 334 Back     alignment and structure
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase From An Extreme Thermophile, Thermus Thermophilus Length = 333 Back     alignment and structure
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehydrogenase Created By Directed Evolution Length = 334 Back     alignment and structure
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine Length = 366 Back     alignment and structure
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobus Tokodaii Strain7 Length = 409 Back     alignment and structure
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From Archaeoglobus Fulgidus Studied By Crystal Structure Analysis And Engineering Of Chimers Length = 412 Back     alignment and structure
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered Nadp+--> Nad+ Specificity-Reversal Mutant Length = 416 Back     alignment and structure
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of Proteins. Length = 416 Back     alignment and structure
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue Structure Of Rate-limited Product Complex, 10 Msec Time Resolution Length = 414 Back     alignment and structure
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Length = 416 Back     alignment and structure
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active Site Length = 416 Back     alignment and structure
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled) Length = 416 Back     alignment and structure
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With Mg- Isocitrate Length = 416 Back     alignment and structure
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation Involves No Long-Range Conformational Change In The Free Enzyme Length = 416 Back     alignment and structure
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m Bound To Isocitrate And Mn2+ Length = 416 Back     alignment and structure
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m Mutant In Complex With Isocitrate, Magnesium(Ii) And Thionadp Length = 416 Back     alignment and structure
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate Dehydrogenase From Acidithiobacillus Thiooxidans Length = 429 Back     alignment and structure
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Bacillus Subtilis Length = 423 Back     alignment and structure
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From Burkholderia Pseudomallei Length = 427 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Aeropyrum Pernix Length = 435 Back     alignment and structure
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate Facultative Thermophile, Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3- Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase (tm0556) From Thermotoga Maritima At 1.90 A Resolution Length = 366 Back     alignment and structure
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate Dehydrogenase From Thiobacillus Ferrooxidans With 3- Isopropylmalate Length = 358 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From Pseudomonas Complex With Nadh, Oxalate And Metal Ion Length = 364 Back     alignment and structure
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from Thermus Thermophilus Length = 345 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium Tuberculosis Leub (Rv2995c) Length = 337 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase From Burkholderia Pseudomallei Length = 363 Back     alignment and structure
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution Length = 405 Back     alignment and structure
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella Typhimurium Length = 363 Back     alignment and structure
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli Length = 363 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-180
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-178
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-177
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-162
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 1e-159
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-140
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 1e-133
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 1e-132
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 1e-132
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-132
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 1e-130
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 1e-119
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 3e-94
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 1e-77
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 4e-60
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 6e-60
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 1e-58
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 2e-58
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 3e-58
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 4e-58
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 5e-58
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 3e-56
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 2e-10
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 4e-09
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 2e-08
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
 Score =  501 bits (1293), Expect = e-180
 Identities = 156/346 (45%), Positives = 216/346 (62%), Gaps = 18/346 (5%)

Query: 15  TRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHG-DMKRV 73
            ++   +P+   G    VTLIPGDG+G  +T++V  + EA + PI +E   +   D K  
Sbjct: 4   AQAERTLPKKYGGRFT-VTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEG 62

Query: 74  PQQVLDSIRKNKVCLKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQN 132
             + ++S+++NK+ LKG   TP    G  SLNV LRK+LD+YA +    +L G+ TR  +
Sbjct: 63  VYEAVESLKRNKIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPD 122

Query: 133 VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVH 192
           +D++VIRENTEGE+SGLEHE VPGVVESLKV+T+  +ERIA++AF++A    RK VTAVH
Sbjct: 123 IDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVH 182

Query: 193 KANIMKLADGLFLESCREVATK-YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNL 251
           KANIMKL DGLF     E+  K YP I  + IIVDN  MQ V+KP QFDV+VTP++YG +
Sbjct: 183 KANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTI 242

Query: 252 VSNTAAGIAGGTGVMPGAGNVGNEKVV-------------EQKKANPVALLLSSAMMLRH 298
           + N  A + GG G++ GA N G +  V              Q  ANP A++LSS +ML H
Sbjct: 243 LGNIGAALIGGPGLVAGA-NFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNH 301

Query: 299 LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 344
           L    +A R+  AV   I+E K+ T+D+GG  +T    + +I  L 
Sbjct: 302 LGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLS 347
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 359 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A Length = 361 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Length = 405 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Length = 390 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 91.32
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 86.45
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 82.06
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
Probab=100.00  E-value=8.3e-113  Score=833.24  Aligned_cols=328  Identities=47%  Similarity=0.736  Sum_probs=307.1

Q ss_pred             hccccc-CCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-CCCCcHHHHHHHHhcCeEEEccc
Q 019198           15 TRSVTY-MPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MKRVPQQVLDSIRKNKVCLKGGL   92 (344)
Q Consensus        15 ~~~~~~-~~~~~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-g~~lp~~~~~~~~~~da~l~G~~   92 (344)
                      |+|++. +++++|+++++|+|||||||||||++++++||++++++++|+++++|.. |+++|++++++|+++|++||||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~g~~lp~~tl~~~~~~da~l~Gav   81 (349)
T 3blx_A            2 TAAQAERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNKIGLKGLW   81 (349)
T ss_dssp             -----------CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSSTTCHHHHHHHHHHHHHHSEEEEEEC
T ss_pred             cccccccCCccccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCcccCCcCcHHHHHHHHHCCEEEECCc
Confidence            456663 4567899999999999999999999999999999999999999999986 99999999999999999999999


Q ss_pred             cCCCC-CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHH
Q 019198           93 KTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSER  171 (344)
Q Consensus        93 ~~p~~-~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eR  171 (344)
                      ++|.. ++++|+|+.|||+||||+|+|||+++||+++|++++|++||||||||+|+|.|++..+++++++++|||+++||
T Consensus        82 ~~P~~~~~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eR  161 (349)
T 3blx_A           82 HTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTER  161 (349)
T ss_dssp             CSHHHHHTCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHH
T ss_pred             cCCCCCCCccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHH
Confidence            99953 46778999999999999999999999999999999999999999999999999887788999999999999999


Q ss_pred             HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchh
Q 019198          172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGN  250 (344)
Q Consensus       172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGD  250 (344)
                      |+|+||++|++|+|||||+|||+||||+|||||+++|+|++ ++||+|+++|+|||+|+||||++|++||||||+|||||
T Consensus       162 iar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGD  241 (349)
T 3blx_A          162 IARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGT  241 (349)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHH
T ss_pred             HHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchH
Confidence            99999999999988999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 019198          251 LVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIS  317 (344)
Q Consensus       251 IlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~  317 (344)
                      ||||++|+++||+||+||+ |+|             ||||||||+|||+|+|||++|||+|||+.++|++|++||.++++
T Consensus       242 IlSD~aa~l~GslGl~pSa-nig~~~a~fEpvH~GSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~  320 (349)
T 3blx_A          242 ILGNIGAALIGGPGLVAGA-NFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIA  320 (349)
T ss_dssp             HHHHHHHHHHTCGGGCEEE-EEESSCEEECCTTTTSCC--CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCcccceEE-EECCCceeEcCCCCCchhhhcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 997             89999999999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198          318 EEKYRTKDLGGGCTTQQIVDAVIANL  343 (344)
Q Consensus       318 ~g~~~T~DlgG~~sT~e~~~aV~~~l  343 (344)
                      +|+++|+||||++||+||+|+|+++|
T Consensus       321 ~G~~~T~Dlgg~~~T~e~~daI~~~l  346 (349)
T 3blx_A          321 EGKHTTRDIGGSSSTTDFTNEIINKL  346 (349)
T ss_dssp             SSSSCBGGGTCCBCHHHHHHHHHHHH
T ss_pred             cCCccCCCcCCCCCHHHHHHHHHHHh
Confidence            99779999999999999999999987
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 9e-92
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-87
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 7e-86
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-85
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-81
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-81
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 3e-79
d1w0da_337 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-70
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-70
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-62
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 4e-60
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: Isocitrate dehydrogenase, ICDH
species: Bacillus subtilis [TaxId: 1423]

 Score =  278 bits (712), Expect = 9e-92
 Identities = 115/406 (28%), Positives = 176/406 (43%), Gaps = 97/406 (23%)

Query: 32  VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF--------------EKYEVHGDMKRVPQQV 77
           +  I GDG GP + NA  +V+EA     Y               + Y   G+   +P + 
Sbjct: 22  IPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEW--LPAET 79

Query: 78  LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVD 134
           LD IR+  + +KG L TPVGGG+ SLNV LR+ELDL+  L       G+P+   R ++ D
Sbjct: 80  LDVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTD 139

Query: 135 IVVIRENTEGEYSGLEHEVVPGVVESL-----------------------KVITKFCSER 171
           +V+ RENTE  Y+G+E+      V+ L                       K +++  + R
Sbjct: 140 MVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSR 199

Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK----------------- 214
           + + A +YA  + RK VT VHK NIMK  +G F     E+A K                 
Sbjct: 200 LVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAE 259

Query: 215 ----------------YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAG 258
                              I   + I D    Q++++P +FDV+ T NL G+ +S+  A 
Sbjct: 260 EQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAA 319

Query: 259 IAGGTGVMPGAGNVGNE--------------KVVEQKKANPVALLLSSAMMLRHLQFPSF 304
             GG G+ PGA N+  E              K     K NP +++LS  ++L HL +   
Sbjct: 320 QVGGIGIAPGA-NINYETGHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEA 378

Query: 305 ADRLETAVKRVISEEKYRTKDL------GGGCTTQQIVDAVIANLD 344
           AD +  ++++ I   K  T D              +  + +I N+D
Sbjct: 379 ADLVIKSMEKTI-ASKVVTYDFARLMDGATEVKCSEFGEELIKNMD 423
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Length = 337 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 96.66
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 92.92
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=8e-102  Score=753.37  Aligned_cols=306  Identities=39%  Similarity=0.653  Sum_probs=295.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCC
Q 019198           30 RAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGV  100 (344)
Q Consensus        30 ~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~  100 (344)
                      |+|+||||||||||||+++++||+++    +++++|+++++|.+     |+++|++++++|+++|++||||+++|.    
T Consensus         2 y~I~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~~~~~~~~~~da~l~G~~~~~~----   77 (336)
T d1wpwa_           2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESA----   77 (336)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTH----
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHHhCCcCCHHHHHHHHhcCeeEeccccccc----
Confidence            89999999999999999999999986    79999999999987     999999999999999999999999873    


Q ss_pred             CchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198          101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA  180 (344)
Q Consensus       101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A  180 (344)
                      .++++.||++||||+|+||+|++||++++++++|++||||||||+|+|.+++..++++++++++||+++|||+|+||+||
T Consensus        78 ~~~~l~LR~~ldlyanvRP~~~~pg~~~~~~~iDivIvREnteG~Y~G~~~~~~~~~~~~~~~~tr~~~eRI~r~AFe~A  157 (336)
T d1wpwa_          78 ADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA  157 (336)
T ss_dssp             HHHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             ccchHHHhhhccceeeeeeeeccCCCccccCCccEEEEehhhcCcccCcccccccccceeEEEEeeechhhhhhhhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhc
Q 019198          181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA  260 (344)
Q Consensus       181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~  260 (344)
                      ++| ++|||++||+||||.++++|+++|+++  +||+|++++++||+++||||++|++||||||+|||||||||++++++
T Consensus       158 ~~r-~~kvt~v~Kanvl~~~~g~f~~~~~~v--~~~~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDl~a~l~  234 (336)
T d1wpwa_         158 LRR-RKKVTCVHKANVMRITDGLFAEACRSV--LKGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA  234 (336)
T ss_dssp             HTT-TSEEEEEECTTTCTTHHHHHHHHHHHH--HTTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred             Hhc-CCeEEEEeccceeeeecccceeEEEEe--eeeeEEEeehhhhhhHHhhccCCccceEEEehhHHHHhhhHHHHHhh
Confidence            987 789999999999999999999999998  58999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcc
Q 019198          261 GGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKY  321 (344)
Q Consensus       261 GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~  321 (344)
                      ||+||+||+ |+|            ||||||||+|||+|||||++|||+|+|.       .+++++|++||.+++++|++
T Consensus       235 G~lGl~ps~-nig~~~a~fEp~HGsApdiaGk~iaNP~A~Ils~ammL~~lg~~~~~~~~~~~a~~ie~Av~~v~~~~~~  313 (336)
T d1wpwa_         235 GSLGIAPSA-NIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKA  313 (336)
T ss_dssp             TCGGGCEEE-EECSSCEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCceecccc-ccCCCceecccccccccccCCCCCCChHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999 999            9999999999999999999999999984       47899999999999988878


Q ss_pred             cCCCCCCCCcHHHHHHHHHHhc
Q 019198          322 RTKDLGGGCTTQQIVDAVIANL  343 (344)
Q Consensus       322 ~T~DlgG~~sT~e~~~aV~~~l  343 (344)
                      +|+||||++||+||+|+|+++|
T Consensus       314 ~T~DlGG~~tT~e~~davi~~L  335 (336)
T d1wpwa_         314 LTPDVGGNATTDDLINEIYNKL  335 (336)
T ss_dssp             CCGGGTCCCCHHHHHHHHHHSC
T ss_pred             cCcccCCCccHHHHHHHHHHhc
Confidence            9999999999999999999987
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure