Citrus Sinensis ID: 019213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MAGFFSLGRVSSSSNNNQEDQQHNPANPITPENWFWYKNEDISYKQGASFELWQQQAELLLQQRQQQQQDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLALQQQRLQLRGETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTGESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPFTTFMAAAGTQFFPSPRSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEccccccccccccEEccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHcccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccEEEEEEEcccccccccEEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccccccccEEEEEcccccccccccEEEccccHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
magffslgrvssssnnnqedqqhnpanpitpenwfwyknedisykqgASFELWQQQAELLLQQRQQQQQDLYSssaaaglgmgpisrsainvvggidnsssrSAFMMVRsssgigggmscqdcgnqakkdcahmrcrtccksrgfdcqthvKSTWVAASKRREKQQQLALQQQRLQLRgetnkrpreanpissslacsrlpanasgfevaenlpgevstqAVFRCVKvsgiddsedqfayqtsvnigghlfkgilydqgpestyttgesssgggiqlqplnlvtagagpdpvnttatpvspaaaavtassstaafldpsslyptpfttfmaaagtqffpsprss
Flexible Loop (DISEMBL)
MAGFFSLGRvssssnnnqedqqhnpanpitpeNWFWYKNEDISYKQGASFELWQQQAELLLQQRQQQQQDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCksrgfdcqthVKSTWVAASKRREKQQQLALQQQRlqlrgetnkrpreanpissslacSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTGESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPFTTFMAAAGTQFFPSPRSS
Low Complexity Region (SEG)
MAGFFSLGRVssssnnnQEDQQHNPANPITPENWFWYKNEDISYKQGASFElwqqqaelllqqrqqqqqdlYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKrrekqqqlalqqqrlqlrGETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPestyttgesssgggIQLQPLNLVTAGAGPDPVNttatpvspaaaavtassstaaFLDPSSLYPTPFTTFMAAAGTQFFPSPRSS
Disordered region (IsUnstruct)
******************************PENWFWYKNEDISYKQGASFELWQ************************************NVV*************************SCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVA***************************************************VA*NLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQ*******************************************************************FTT****************
Disordered Region (DISOPRED)
*AGFFS***************************WFWYKNEDISYKQGASFEL***********************AAAGLGM*****************************************GNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWV*********************************************************PGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQG*************************************************SSSTAAFLDPSSLYPTPFTTFMAAAGT**F******
Disordered Region (DISEMBL)
***********************NPANPITPENWFWYKNEDISYKQGASFELWQQQAELLL***********SSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWV**************QQQRLQLRGETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPE************GIQLQPLNLVTAGAGPDPVNTTAT**************TAAFLDPSSLYPTPFTTFMAAAGTQFFPSPRSS
Disordered Region (DISPRO)
******************************PENWFWYKNEDISYKQGASFELWQQQAELLLQQRQQQQQDLYSSSAAAGLGMGP*******************AFM***SS**IGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQL********************************************LPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPE**********************************************ASSSTAAFLDPSSLYPTPFTTFMAAAGTQFF******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGFFSLGRVSSSSNNNQEDQQHNPANPITPENWFWYKNEDISYKQGASxxxxxxxxxxxxxxxxxxxxxLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLALQQQRLQLRGETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTGESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPFTTFMAAAGTQFFPSPRSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
224134186	344	short internodes 2 [Populus trichocarpa]	0.968	0.968	0.596	4e-85
225431237	344	PREDICTED: uncharacterized protein LOC10	0.921	0.921	0.551	2e-83
255585965	350	transcription factor, putative [Ricinus	0.889	0.874	0.602	2e-83
297735063	317	unnamed protein product [Vitis vinifera]	0.837	0.908	0.547	7e-79
281333033	363	stylish [Brassica rapa subsp. pekinensis	0.965	0.914	0.505	2e-76
281333035	366	stylish 1-2 [Brassica rapa subsp. pekine	0.965	0.907	0.496	9e-75
240255588	370	Lateral root primordium (LRP) protein-li	0.968	0.9	0.489	2e-74
15239350	331	Lateral root primordium-related protein	0.918	0.954	0.513	4e-74
297816366	369	hypothetical protein ARALYDRAFT_906453 [	0.968	0.902	0.498	7e-74
78499688	345	hypothetical protein [Eutrema halophilum	0.904	0.901	0.472	5e-72

>gi|224134186|ref|XP_002327777.1| short internodes 2 [Populus trichocarpa] gi|222836862|gb|EEE75255.1| short internodes 2 [Populus trichocarpa]

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 211/354 (59%), Positives = 253/354 (71%), Gaps = 21/354 (5%)

Query: 1   MAGFFSLGRVSSSSNNNQEDQQHNPANP----ITPENWFWYKNEDISYKQGASFELWQQQ 56
           MAG FSLGR SSSS NNQE QQ+N  +     I  ENWF Y++ED SYK    ++     
Sbjct: 1   MAGLFSLGRDSSSSGNNQEQQQNNNNSNPPNEIPQENWFCYRSEDNSYKGFELWQQHHHH 60

Query: 57  AELLLQQRQQQQQDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSA-FMMVRS-SSGI 114
            ELL Q+ Q  QQDLYSS  A GLG+GP SR++IN+     + S+ +A FMM+R   SG+
Sbjct: 61  QELLHQRHQNPQQDLYSS--AVGLGVGP-SRASINISDESSSRSAAAAAFMMMRPVGSGV 117

Query: 115 GGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLAL---- 170
           GG +SCQDCGNQAKKDC HMRCRTCCKSRGF+CQTHVKSTWV ASKRRE+Q QL +    
Sbjct: 118 GGSISCQDCGNQAKKDCVHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQHQLTIFQQQ 177

Query: 171 QQQRLQLRGETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSG 230
           QQQ+LQ+RGE  KR RE NP  SSLAC+ L  N SG E+  N P EVS+ A+FRCV+VSG
Sbjct: 178 QQQQLQIRGENPKRQRE-NPSPSSLACTHLANNMSGLELG-NFPAEVSSPALFRCVRVSG 235

Query: 231 IDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTT-GESSSGGGIQLQPLNLVTAGAGP 289
           ID+SE+  AYQT+VNIGGH+FKG+LYD+GPES Y   GE+SSGGG  +QPLNL+ AG   
Sbjct: 236 IDESEEMLAYQTAVNIGGHVFKGVLYDRGPESNYLAPGETSSGGGGGVQPLNLIAAGTA- 294

Query: 290 DPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPFTTFMAAAGTQFFPSPRS 343
               +     +     VT +S+TA+FLDPSSLYP P  TFM  AGTQFFP+PRS
Sbjct: 295 --TTSATISATGGGGGVTVASTTASFLDPSSLYPAPLNTFM--AGTQFFPNPRS 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431237|ref|XP_002267550.1| PREDICTED: uncharacterized protein LOC100250664 [Vitis vinifera]

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 203/368 (55%), Positives = 240/368 (65%), Gaps = 51/368 (13%)

Query: 1   MAGFFSLGRVSSSSNNNQEDQQHNPANPITPENWFWYKNEDISYKQGASFELWQQQAELL 60
           MAGFF LG    S      +Q  NP N I PE+ F+Y+NEDISYK    FELWQ Q +  
Sbjct: 1   MAGFFPLGGGRGS------NQDSNPPNEIPPESCFFYRNEDISYK---GFELWQHQPQEQ 51

Query: 61  LQQRQQQQ-QDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVR---------- 109
           L QR Q   QDLYSS  + G+G    SRS+IN    + + SSRSAF+M+R          
Sbjct: 52  LHQRHQHHPQDLYSSGPSLGVGS---SRSSIN----LSDDSSRSAFLMMRQAAGGGGAGA 104

Query: 110 SSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLA 169
              G GGGMSCQDCGNQAKKDC HMRCRTCCKSRGF C TH+KSTWV A+KRRE+QQ L 
Sbjct: 105 GGGGGGGGMSCQDCGNQAKKDCIHMRCRTCCKSRGFQCPTHIKSTWVPAAKRRERQQHLT 164

Query: 170 L---------------QQQRLQLRGETNKRPREANPISSSLACSRLPANASGFEVAENLP 214
           +                QQ+LQLRGE  KR RE NP SS+LAC+RLP + SG E+A N P
Sbjct: 165 VIQQQQQQQQQQQHQQHQQQLQLRGENPKRQRE-NPSSSALACTRLPTHTSGLEIA-NFP 222

Query: 215 GEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTGESSSGGG 274
            EV++ AVFRCV+VS ID+++DQ+AYQT+VNIGGH+FKGILYD GPE  Y  GESSS GG
Sbjct: 223 SEVNSPAVFRCVRVSSIDETDDQYAYQTAVNIGGHVFKGILYDHGPEGHYGGGESSSAGG 282

Query: 275 IQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPFTTFMAAAG 334
             LQ LNL+T  A       + +  + A     ++ + AAFLDPS LYP P  TFM  AG
Sbjct: 283 GGLQQLNLITGAA----AAASTSTATAATTGSGSAGAAAAFLDPS-LYPAPLNTFM--AG 335

Query: 335 TQFFPSPR 342
           TQFFP PR
Sbjct: 336 TQFFPHPR 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585965|ref|XP_002533653.1| transcription factor, putative [Ricinus communis] gi|223526448|gb|EEF28724.1| transcription factor, putative [Ricinus communis]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 215/357 (60%), Positives = 246/357 (68%), Gaps = 51/357 (14%)

Query: 16  NNQEDQQHNPA-----NPITPENWFWYKNEDISYKQGASFELWQQQAELLLQQRQQQ--- 67
           N ++DQQHN         I  E+WFWYKNED+ YK    FELWQQQ +   +  + Q   
Sbjct: 16  NQEDDQQHNNNPPPPPTEIPQESWFWYKNEDVPYK---GFELWQQQQQQQQEFFRHQSLQ 72

Query: 68  --QQDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGN 125
             QQDLYSS  AAGLG+GP SRS+IN     D SSSRSAFMM+RSSSG G  MSCQDCGN
Sbjct: 73  QQQQDLYSS--AAGLGVGP-SRSSINFS---DESSSRSAFMMMRSSSG-GSSMSCQDCGN 125

Query: 126 QAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLALQQQRLQLRGETN--- 182
           QAKKDC HMRCRTCCKSRGFDCQTHVKSTWV ASKRRE+QQQL   QQ+   + +     
Sbjct: 126 QAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLVAIQQQQHQQQQQQQQQ 185

Query: 183 ----KRPREANPISSSLAC-----SRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDD 233
               KR RE NP SSSLAC     +RLP N+SG E+  N P EVS+ AVFRCVKVSGID+
Sbjct: 186 QQNPKRLRE-NPTSSSLACTPATNTRLPNNSSGLELG-NFPSEVSSPAVFRCVKVSGIDE 243

Query: 234 SEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTGESS---SGGGIQLQPLNLVTAGAGPD 290
           ++DQ+AYQT+VNIGGH+FKGILYD GPESTY     +    G G  LQPLNL+TA     
Sbjct: 244 NDDQYAYQTAVNIGGHVFKGILYDHGPESTYMPAAETSSGGGSGGGLQPLNLITA----- 298

Query: 291 PVNTTATPVSP--AAAAVTASSSTAA--FLDPSSLYPTPFTTFMAAAGTQFFPSPRS 343
              T +  +SP      VT++SS AA  FLDPSSLYPTP  TFM  AGTQFFP+PRS
Sbjct: 299 ---TASAAISPGGGGGGVTSASSGAAVGFLDPSSLYPTPLNTFM--AGTQFFPNPRS 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735063|emb|CBI17425.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 183/334 (54%), Positives = 216/334 (64%), Gaps = 46/334 (13%)

Query: 1   MAGFFSLGRVSSSSNNNQEDQQHNPANPITPENWFWYKNEDISYKQGASFELWQQQAELL 60
           MAGFF LG    S      +Q  NP N I PE+ F+Y+NEDISYK    FELWQ Q +  
Sbjct: 1   MAGFFPLGGGRGS------NQDSNPPNEIPPESCFFYRNEDISYK---GFELWQHQPQEQ 51

Query: 61  LQQRQQQQ-QDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGGGMS 119
           L QR Q   QDLYSS  + G+G    SRS+IN    + + SSRSA               
Sbjct: 52  LHQRHQHHPQDLYSSGPSLGVGS---SRSSIN----LSDDSSRSA--------------- 89

Query: 120 CQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLALQQQRLQLRG 179
           CQDCGNQAKKDC HMRCRTCCKSRGF C TH+KSTWV A+KRRE+QQ L L       RG
Sbjct: 90  CQDCGNQAKKDCIHMRCRTCCKSRGFQCPTHIKSTWVPAAKRRERQQHLTL-------RG 142

Query: 180 ETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFA 239
           E  KR RE NP SS+LAC+RLP + SG E+A N P EV++ AVFRCV+VS ID+++DQ+A
Sbjct: 143 ENPKRQRE-NPSSSALACTRLPTHTSGLEIA-NFPSEVNSPAVFRCVRVSSIDETDDQYA 200

Query: 240 YQTSVNIGGHLFKGILYDQGPESTYTTGESSSGGGIQLQPLNLVTAGAGPDPVNTTATPV 299
           YQT+VNIGGH+FKGILYD GPE  Y  GESSS GG  LQ LNL+T  A       + +  
Sbjct: 201 YQTAVNIGGHVFKGILYDHGPEGHYGGGESSSAGGGGLQQLNLITGAA----AAASTSTA 256

Query: 300 SPAAAAVTASSSTAAFLDPSSLYPTPFTTFMAAA 333
           + A     ++ + AAFLDP SLYP P  TFMA A
Sbjct: 257 TAATTGSGSAGAAAAFLDP-SLYPAPLNTFMAVA 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281333033|gb|ADA60971.1| stylish [Brassica rapa subsp. pekinensis]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/374 (50%), Positives = 238/374 (63%), Gaps = 42/374 (11%)

Query: 1   MAGFFSLGRVSSSSNNNQEDQQH----NPANPITPENWFWYKNEDISYKQG--------- 47
           MAGFFSL             ++H    NP  P++ E+W WY+N +++             
Sbjct: 1   MAGFFSLDGGGGRGGGGNGQEEHRTNTNPPPPVS-ESWLWYRNPNVNANANAPSSSNAAA 59

Query: 48  -ASFELWQQ--QAELLLQQRQQQQQ-DLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRS 103
             + ELWQ   Q E++ Q +Q QQ+ DLYSS  AAGLG+GP S S  N+ G   N+ +  
Sbjct: 60  LGTLELWQNHNQQEIMFQHQQHQQRLDLYSS--AAGLGVGPSSHSQFNISGETSNAGAGG 117

Query: 104 A----FMMVRSSSGIGGG-MSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAA 158
                 MM+RS  G GG  +SCQDCGNQAKKDCAH+RCRTCCKSRGF C THV+STWV A
Sbjct: 118 TAAAALMMMRSGGGGGGTGVSCQDCGNQAKKDCAHVRCRTCCKSRGFQCPTHVRSTWVPA 177

Query: 159 SKRREKQQQLALQQQRLQL-RGETN--KRPREANP-ISSSLACSRLPA--NASGFEVAEN 212
           +KRRE+QQQL   Q +  L RG++   KR RE  P  SSSL C+R+P   NASG EV + 
Sbjct: 178 AKRRERQQQLGTVQPQTHLPRGDSGVPKRLRENLPATSSSLVCTRVPTHHNASGLEVGD- 236

Query: 213 LPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTG---ES 269
            P EVS+ AVFRCV+VS ++D E++FAYQT+V+IGGH+FKGILYD GP S    G     
Sbjct: 237 FPAEVSSPAVFRCVRVSSVEDGEEEFAYQTAVSIGGHVFKGILYDNGPGSIGGGGYNVGE 296

Query: 270 SSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPFTTF 329
           SS GG   Q +NL+TAG+       TA+  +P A A+  SS  AA+ DP++LYPTP  TF
Sbjct: 297 SSSGGGGAQQMNLITAGS---VTVATASSSTPNAGAIGGSS--AAYTDPAALYPTPINTF 351

Query: 330 MAAAGTQFFPSPRS 343
           M  AGTQFFP+PRS
Sbjct: 352 M--AGTQFFPNPRS 363

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281333035|gb|ADA60972.1| stylish 1-2 [Brassica rapa subsp. pekinensis]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 187/377 (49%), Positives = 237/377 (62%), Gaps = 45/377 (11%)

Query: 1   MAGFFSLGRVSSSSNNNQEDQQH----NPANPITPENWFWYKNEDISYKQG--------- 47
           MAGFFSLG            ++H    NP  P++ ++W WY+N +++             
Sbjct: 1   MAGFFSLGGGGGRGGGGNGQEEHRTNTNPPPPVS-DSWLWYRNPNVNANANANANAPSSS 59

Query: 48  -----ASFELWQQ--QAELLLQQRQQQQQ-DLYSSSAAAGLGMGPISRSAINVVGGIDNS 99
                 + ELWQ   Q E++ Q +Q QQ+ DLYSS  AAGLG+GP S S  N+ G   N+
Sbjct: 60  NAAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSS--AAGLGVGPSSHSQFNISGETSNA 117

Query: 100 SSRSA----FMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTW 155
            +        MM+RS  G G G+SCQDCGNQAKKDCAH+RCRTCCKSRGF C THV+STW
Sbjct: 118 GAGGTAAAALMMMRSGGGGGTGVSCQDCGNQAKKDCAHVRCRTCCKSRGFQCPTHVRSTW 177

Query: 156 VAASKRREKQQQLALQQQRLQL-RGETN--KRPREANP-ISSSLACSRLPA--NASGFEV 209
           V A+KRRE+QQQL   Q +  L RG++   KR RE  P  SSSL C+R+P   NASG EV
Sbjct: 178 VPAAKRRERQQQLGTVQPQTHLPRGDSGVPKRLRENLPATSSSLVCTRVPTHHNASGLEV 237

Query: 210 AENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTG-- 267
            +  P EVS+ AVFR V+VS ++D E++FAYQT+V+IGGH+FKGILYD GP S    G  
Sbjct: 238 GD-FPAEVSSPAVFRRVRVSSVEDGEEEFAYQTAVSIGGHVFKGILYDNGPGSIGGGGYN 296

Query: 268 -ESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTPF 326
              SS GG   Q +NL+TAG+       TA+  +P A  +  SS  AA+ DP++LYPTP 
Sbjct: 297 VGESSSGGGGAQQMNLITAGS---VTVATASSSTPNAGGIGGSS--AAYTDPAALYPTPI 351

Query: 327 TTFMAAAGTQFFPSPRS 343
            TFM  AGTQFFP+PRS
Sbjct: 352 NTFM--AGTQFFPNPRS 366

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255588|ref|NP_190675.4| Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana] gi|332645224|gb|AEE78745.1| Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 186/380 (48%), Positives = 237/380 (62%), Gaps = 47/380 (12%)

Query: 1   MAGFFSLGRVSSSSN---NNQEDQQHNPANPITP--ENWFWYKNEDISYKQG-------- 47
           MAGFFSL           NNQED + N  NP  P  E W WY+N +++            
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHRSN-TNPPPPVSEAWLWYRNPNVNANANTNVNANAP 59

Query: 48  -------ASFELWQQ--QAELLLQQRQQQQQ-DLYSSSAAAGLGMGPISRSAINVVGGID 97
                   + ELWQ   Q E++ Q +Q QQ+ DLYSS  AAGLG+GP + +  ++ G   
Sbjct: 60  SSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSS--AAGLGVGPSNHNQFDISGETS 117

Query: 98  NSSSRSAF----MMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKS 153
            + +  A     +    S G  GG+SCQDCGNQAKKDC+HMRCRTCCKSRGF+C THV+S
Sbjct: 118 TAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRS 177

Query: 154 TWVAASKRREKQQQLALQQQRLQL-RGET-NKRPREANP-ISSSLACSRLPANASGFEVA 210
           TWV A+KRRE+QQQLA  Q + QL RGE+  KR RE  P  SSSL C+R+P++ SG EV 
Sbjct: 178 TWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSH-SGLEVG 236

Query: 211 ENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYD------QGPESTY 264
            N P EVS+ AVFRCV+VS ++D E++FAYQT+V+IGGH+FKGILYD       G     
Sbjct: 237 -NFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNV 295

Query: 265 TTGESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAA-FLDPSSLYP 323
                SS GG   Q LNL+TAG+       TA+  +P    + +SS+ AA ++DP++LYP
Sbjct: 296 VAAGESSSGGGGAQQLNLITAGS---VTVATASSSTPNLGGIGSSSAAAATYIDPAALYP 352

Query: 324 TPFTTFMAAAGTQFFPSPRS 343
           TP  TFM  AGTQFFP+PRS
Sbjct: 353 TPINTFM--AGTQFFPNPRS 370

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239350|ref|NP_201436.1| Lateral root primordium-related protein [Arabidopsis thaliana] gi|4929803|gb|AAD34162.1|AF152555_1 putative zinc finger protein SHI [Arabidopsis thaliana] gi|10177429|dbj|BAB10714.1| zinc finger protein SHI-like [Arabidopsis thaliana] gi|225879168|dbj|BAH30654.1| hypothetical protein [Arabidopsis thaliana] gi|332010819|gb|AED98202.1| Lateral root primordium-related protein [Arabidopsis thaliana]

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 184/358 (51%), Positives = 232/358 (64%), Gaps = 42/358 (11%)

Query: 1   MAGFFSLGRVSSSSN-NNQEDQQHNPANPITPENWFWYKNEDISYKQG-------ASFEL 52
           MAGFFSLG     +  +N     +NP++  T E+W W +N + +   G        + EL
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGT-ESWLWCRNPNSNADGGEAGPSYKGTLEL 59

Query: 53  WQ----QQAELLLQQRQQQQQDLYSSSAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMV 108
           WQ    Q+     QQ+QQQ+ DLY+S  AAGLG+GP +RS I   GG        A MM+
Sbjct: 60  WQHPNNQEIIFQQQQQQQQRLDLYTS--AAGLGVGPSNRSLIETSGG--------ALMMM 109

Query: 109 RSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQL 168
           RS SG GG  SCQDCGNQ+KKDC+HMRCRTCCKSRG DC THVKSTWV A+KRRE+QQQL
Sbjct: 110 RSGSGSGG-PSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQL 168

Query: 169 ALQQQRLQLRGETNKRPREANPI-SSSLACSRLPA-NASGFEVAENLPGEVSTQAVFRCV 226
           +  QQ  QL G   KR RE  P  S+S+A +R+P+ N SG EV  N P EVS+ AVFRCV
Sbjct: 169 STGQQPQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVG-NFPPEVSSSAVFRCV 227

Query: 227 KVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTGESSSGGGIQLQPLNLVTAG 286
           +VS +DD E+++AY+T+V+IGGH+FKG+LYDQGP        SSSGGG   QPLNL+TAG
Sbjct: 228 RVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAE-----RSSSGGGS--QPLNLITAG 280

Query: 287 AGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSL-YPTPFTTFMAAAGTQFFPSPRS 343
               P  ++++P       V  S+S   ++DP+SL YPTP  TFM   GT FF + RS
Sbjct: 281 ----PSASSSSPNVSCNNGVVGSTSD-HYIDPASLNYPTPINTFM--TGTHFFSNSRS 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816366|ref|XP_002876066.1| hypothetical protein ARALYDRAFT_906453 [Arabidopsis lyrata subsp. lyrata] gi|297321904|gb|EFH52325.1| hypothetical protein ARALYDRAFT_906453 [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 189/379 (49%), Positives = 238/379 (62%), Gaps = 46/379 (12%)

Query: 1   MAGFFSLGRVSSSSN---NNQEDQQHNPANPITP--ENWFWYKNEDISYKQG-------- 47
           MAGFFSL           NNQED + N  NP  P  E W WY+N + +            
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHRSN-TNPPPPVSEAWLWYRNPNANANANANAPSSSN 59

Query: 48  ---ASFELWQQ--QAELLLQQRQQQQQ-DLYSSSAAAGLGMGPISRSAINVVG--GIDNS 99
               + ELWQ   Q E++ Q +Q QQ+ DLYSS  AAGLG+GP + +  ++ G      +
Sbjct: 60  AALGTLELWQNHNQQEIMFQHQQHQQRLDLYSS--AAGLGVGPSNHNQFDISGETSTAGA 117

Query: 100 SSRSAFMMVRSSSGIGGG-----MSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKST 154
              +A MM+RS    GGG     +SCQDCGNQAKKDCAHMRCRTCCKSRGF+C THV+ST
Sbjct: 118 GRAAAMMMIRSGGAGGGGGGSGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRST 177

Query: 155 WVAASKRREKQQQLALQQQRLQL-RGET-NKRPREANP-ISSSLACSRLPANASGFEVAE 211
           WV A+KRRE+QQQLA  Q +  L RGE+  KR RE  P  SSSL C+R+P++ SG EV  
Sbjct: 178 WVPAAKRRERQQQLATVQPQTHLPRGESVPKRHRENLPATSSSLVCTRIPSH-SGLEVG- 235

Query: 212 NLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYD------QGPESTYT 265
           N P EVS+ AVFRCV+VS ++D E++FAYQT+V+IGGH+FKGILYD       G      
Sbjct: 236 NFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVV 295

Query: 266 TGESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAA-FLDPSSLYPT 324
               SS GG   Q LNL+TAG+       TA+  +P    + +SS+ AA ++DP++LYPT
Sbjct: 296 APGESSSGGGGAQQLNLITAGSV---TVATASSSTPNLGGIGSSSAAAATYIDPAALYPT 352

Query: 325 PFTTFMAAAGTQFFPSPRS 343
           P  TFM  AGTQFFP+PRS
Sbjct: 353 PINTFM--AGTQFFPNPRS 369

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78499688|gb|ABB45842.1| hypothetical protein [Eutrema halophilum]

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 178/377 (47%), Positives = 223/377 (59%), Gaps = 66/377 (17%)

Query: 1   MAGFFSLGRVSSSSNNNQEDQ-----------QHNPANPITPENWFWYKNE--------- 40
           MA FFSLG        + +D+            +NP+ P   E+W W +N          
Sbjct: 1   MAAFFSLGNGGGDGGGSSQDEHHHHHHSSNTSNYNPS-PSGTESWLWCRNPNSNANANAN 59

Query: 41  --------DISYKQGASFELWQQQA---ELLLQQRQQQQQDLYSSSAAAGLGMGPISRSA 89
                   DI+     + ELWQQ     E+L QQ  QQ+ DLY+S  AAGLG+GP +R+ 
Sbjct: 60  ANANAGGGDIAPSYKGTLELWQQHPSNQEMLFQQ--QQRLDLYTS--AAGLGVGPTNRTL 115

Query: 90  INVVGGIDNSSSRSAFMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQT 149
               G         A MM+RS  G  GG +CQDCGNQAKKDCAHMRCRTCCKSRG +C T
Sbjct: 116 FETSG--------DALMMMRS--GGSGGPNCQDCGNQAKKDCAHMRCRTCCKSRGLECPT 165

Query: 150 HVKSTWVAASKRREKQQQLALQQQRLQLRGETNKRPREANPI-SSSLACSRLPA-NASGF 207
           HVKSTWV A+KRRE+QQQLA  QQ   L     KR RE  P  S+SL C+R+P+ N  G 
Sbjct: 166 HVKSTWVPAAKRRERQQQLASGQQPQGL--SVPKRQREHIPARSTSLVCTRIPSHNPYGL 223

Query: 208 EVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPESTYTTG 267
            V  N P EVS+ AVFRCV+VS +DD ED++AY+T+V+I GH+FKGILYDQGP       
Sbjct: 224 GVG-NFPPEVSSPAVFRCVRVSSVDDGEDEYAYKTAVSISGHVFKGILYDQGPAE----- 277

Query: 268 ESSSGGGIQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSL-YPTPF 326
            SSS GG   QPLNL+TAG    P  ++++P       V  S+S   ++DP+SL YPTP 
Sbjct: 278 RSSSVGGS--QPLNLITAG----PSASSSSPNVSCNNGVVGSTSD-HYIDPASLNYPTPI 330

Query: 327 TTFMAAAGTQFFPSPRS 343
            +FM   GT FF +PR+
Sbjct: 331 NSFM--TGTHFFSNPRA 345

Source: Eutrema halophilum

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2080818	370	STY1 "AT3G51060" [Arabidopsis	0.764	0.710	0.475	3.9e-60
TAIR|locus:2155021	331	SHI "SHORT INTERNODES" [Arabid	0.921	0.957	0.417	8.1e-60
TAIR|locus:2122234	322	STY2 "AT4G36260" [Arabidopsis	0.415	0.444	0.532	7.8e-48
TAIR|locus:2013109	345	SRS7 "AT1G19790" [Arabidopsis	0.933	0.930	0.361	8.1e-44
TAIR|locus:2005659	346	SRS5 "AT1G75520" [Arabidopsis	0.683	0.679	0.383	4e-39
TAIR|locus:2053134	222	SRS4 "AT2G18120" [Arabidopsis	0.389	0.603	0.482	2.7e-34
TAIR|locus:2050074	174	SRS3 "SHI-related sequence3" [	0.122	0.241	0.761	3.4e-34
TAIR|locus:2183078	173	SRS8 "AT5G33210" [Arabidopsis	0.296	0.589	0.556	9.7e-25
TAIR|locus:2096169	183	SRS6 "AT3G54430" [Arabidopsis	0.415	0.781	0.371	2.9e-23

TAIR|locus:2080818 STY1 "AT3G51060" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 134/282 (47%), Positives = 170/282 (60%)

Query:    75 SAAAGLGMGPISRSAINVVGGIDNSSS--RSAFMMVRS--SSGIGGGMSCQDCGNQAKKD 130
             S+AAGLG+GP + +  ++ G    + +   +A MM+RS  S G  GG+SCQDCGNQAKKD
Sbjct:    95 SSAAGLGVGPSNHNQFDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKD 154

Query:   131 CAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXXXXXXXXXXXXXXXX-XGET-NKRPREA 188
             C+HMRCRTCCKSRGF+C THV+STWV A+K                   GE+  KR RE 
Sbjct:   155 CSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHREN 214

Query:   189 NPI-SSSLACSRLPANASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIG 247
              P  SSSL C+R+P++ SG EV  N P EVS+ AVFRCV+VS ++D E++FAYQT+V+IG
Sbjct:   215 LPATSSSLVCTRIPSH-SGLEVG-NFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIG 272

Query:   248 GHLFKGILYDQGPXXXXXXXXXXXXXXIQ------LQPLNLVTAGAGPDPVNXXXXXXXX 301
             GH+FKGILYD GP                       Q LNL+TAG+    V         
Sbjct:   273 GHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGAQQLNLITAGSVT--VATASSSTPN 330

Query:   302 XXXXXXXXXXXXXFLDPSSLYPTPFTTFMAAAGTQFFPSPRS 343
                          ++DP++LYPTP  TFMA  GTQFFP+PRS
Sbjct:   331 LGGIGSSSAAAATYIDPAALYPTPINTFMA--GTQFFPNPRS 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=NAS

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0048479 "style development" evidence=IGI

GO:0048480 "stigma development" evidence=IGI

GO:0010252 "auxin homeostasis" evidence=IGI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2155021 SHI "SHORT INTERNODES" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 149/357 (41%), Positives = 190/357 (53%)

Query:     1 MAGFFSLGRVXXXXXXXQEDQQHNPANPITP--ENWFWYKNEDISY---KQGASFEXXXX 55
             MAGFFSLG          ++ + N  NP +   E+W W +N + +    + G S++    
Sbjct:     1 MAGFFSLGH--GGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLE 58

Query:    56 XXXXXXXXXXXXXXXXYSS------SAAAGLGMGPISRSAINVVGGIDNSSSRSAFMMVR 109
                                      ++AAGLG+GP +RS I   GG        A MM+R
Sbjct:    59 LWQHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGG--------ALMMMR 110

Query:   110 SSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXXXXXXXX 169
             S SG  GG SCQDCGNQ+KKDC+HMRCRTCCKSRG DC THVKSTWV A+K         
Sbjct:   111 SGSG-SGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLS 169

Query:   170 XXXXXXXXXGETNKRPREANPI-SSSLACSRLPAN-ASGFEVAENLPGEVSTQAVFRCVK 227
                      G   KR RE  P  S+S+A +R+P+N  SG EV  N P EVS+ AVFRCV+
Sbjct:   170 TGQQPQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVG-NFPPEVSSSAVFRCVR 228

Query:   228 VSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPXXXXXXXXXXXXXXIQLQPLNLVTAGA 287
             VS +DD E+++AY+T+V+IGGH+FKG+LYDQGP                 QPLNL+TAG 
Sbjct:   229 VSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGS-------QPLNLITAG- 280

Query:   288 GPDPVNXXXXXXXXXXXXXXXXXXXXXFLDPSSL-YPTPFTTFMAAAGTQFFPSPRS 343
                P +                     ++DP+SL YPTP  TFM   GT FF + RS
Sbjct:   281 ---P-SASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMT--GTHFFSNSRS 331

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2122234 STY2 "AT4G36260" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 7.8e-48, Sum P(3) = 7.8e-48
 Identities = 82/154 (53%), Positives = 105/154 (68%)

Query:   118 MSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXX-------XXXXXXX 170
             +SC+DCGNQAKKDC HMRCRTCCKSRGFDC THV+STW+  ++                 
Sbjct:    92 ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGG 151

Query:   171 XXXXXXXXGETNKRP-REANP-ISSSLACSRLPANASGFEVAE-NLPGEVSTQAVFRCVK 227
                     G  +  P R  +P +  + + SRLP++++G E+ E + PGEVS+ A+FRCVK
Sbjct:   152 GSGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVK 211

Query:   228 VSGIDDSED-QFAYQTSVNIGGHLFKGILYDQGP 260
             +SG+DD  D Q+AYQT+VNIGGHLFKGILYDQGP
Sbjct:   212 MSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGP 245

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=NAS

GO:0010051 "xylem and phloem pattern formation" evidence=IGI;RCA

GO:0048479 "style development" evidence=IGI

GO:0048480 "stigma development" evidence=IGI

GO:0010252 "auxin homeostasis" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2013109 SRS7 "AT1G19790" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 132/365 (36%), Positives = 171/365 (46%)

Query:     1 MAGFFSLGRVXXXXXXXQEDQQHNPANPITPENWFW-YKNEDISYKQGASFEXXXXXXXX 59
             MAG F LG          +++ HN        N+ + YK+E  +  +G            
Sbjct:     1 MAGLFYLGGRDHNKQDHHQEKDHNEDKS---NNYLYLYKDEIYNNNKGFEIFPPQYFQQQ 57

Query:    60 XXXXXXXXXXXXYSSSAAAGLGMGPISRSA-----INVVGGIDN-SSSRSAFMMVRSSSG 113
                         YS       G    +RS       NVV   +   SS   F + R    
Sbjct:    58 QQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQ--- 114

Query:   114 IGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXXXXXXXXXXXX 173
               G M+CQDCGNQAKKDC HMRCRTCCKSRGFDCQTHVKSTWV+A+K             
Sbjct:   115 --GNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA 172

Query:   174 X----XXXXG----ETNKRPREANPI---SSSLACSRLP-ANASGFEVAENLPGEVSTQA 221
                      G    + + +  E N      S+LAC+R+  A++SG E + +LP E+S+ A
Sbjct:   173 KRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETS-HLPPEISSPA 231

Query:   222 VFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPXXXXXXXXXXXXXXIQLQP-L 280
             VFRC++VS IDD ++++AYQT+V+IGGH+FKGILYDQGP                 Q  L
Sbjct:   232 VFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHL 291

Query:   281 NLVTAGAGPDPVNXXXXXXXXXXXXXXXXXXXXXFLDPSSLYP---TPFTTFMAAAGTQF 337
             NL+ +       N                      +DPSSLY    TPF  F+A  GT F
Sbjct:   292 NLMDSTPSAATTNAVTAVNTNNGS-----------IDPSSLYTAVATPFNAFVAG-GTPF 339

Query:   338 FPSPR 342
             F S R
Sbjct:   340 FASSR 344

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005659 SRS5 "AT1G75520" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 102/266 (38%), Positives = 132/266 (49%)

Query:     1 MAGFFSLG-RVXXXXXXXQEDQQHNPANPITPENWFWYKNEDISYKQGASFEXXXXXXXX 59
             MAGFF LG R        Q+  Q +  +    ++ + Y  +D  Y     FE        
Sbjct:     1 MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQ 60

Query:    60 XXXXXXXXXXXXYSSSAAA--GLGMGPISRSAINVVGGIDNSSSRSAFMMVRSSSGIGG- 116
                         ++S+ A     GM P   S+ N     +N+ SRS +  V S    GG 
Sbjct:    61 QQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNN-----NNNRSRSLYFNVVSDHEPGGF 115

Query:   117 ------GMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXXXXXXXXX 170
                   GM+CQDCGNQAKKDC HMRCRTCCKSRGF CQTHVKSTWV A+K          
Sbjct:   116 TVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLAS 175

Query:   171 XXXXXXXXGETN--KRPREANPIS------------SSLACSRLP-ANA-SGFEVAENLP 214
                      ET   KR REA+               S+LA +R+  AN+ SG EV+++LP
Sbjct:   176 LQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLP 235

Query:   215 GEVSTQAVFRCVKVSGIDDSEDQFAY 240
              EV++ A+FRCV+VS I++ ED  AY
Sbjct:   236 PEVNSPAIFRCVRVSSIEEDEDDQAY 261

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048467 "gynoecium development" evidence=IGI

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2053134 SRS4 "AT2G18120" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 70/145 (48%), Positives = 88/145 (60%)

Query:   118 MSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXXXXXXXXXXXXX-XX 176
             +SCQ+CGNQAKK C H RCRTCCKS G  C THV+STW+  +K                 
Sbjct:    70 ISCQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTSNPTG 129

Query:   177 XXGETNKRPREANPISSSLACSRLPANASGFEVAEN-LPGEVSTQAVFRCVKVSGIDDSE 235
               G   K  R+ N  ++         ++SG E+ E   P EVS+ A+FRCV++SG DD E
Sbjct:   130 GSGRVGKY-RDINQHAT--------LDSSGLEMGETRFPDEVSSDALFRCVRMSGTDDGE 180

Query:   236 DQFAYQTSVNIGGHLFKGILYDQGP 260
              Q+AYQT+V I GHLFKGILY+QGP
Sbjct:   181 GQYAYQTTVGIAGHLFKGILYNQGP 205

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050074 SRS3 "SHI-related sequence3" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 32/42 (76%), Positives = 36/42 (85%)

Query:   117 GMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAA 158
             G  C+DCGNQAKKDC +MRCRTCCKS+ F CQTH+KSTWV A
Sbjct:     6 GRKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPA 47

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2183078 SRS8 "AT5G33210" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 59/106 (55%), Positives = 70/106 (66%)

Query:   100 SSRSAFMMVRSS-SGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAA 158
             + R+A MM+RS  SG  GG+SCQD GNQAKKDC+HMRCRTCCKSRGF+C THV+STWV A
Sbjct:    31 AERAAMMMIRSGGSGGSGGVSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPA 90

Query:   159 SKXXXXXXXXXXXXXXXXX-XGET-NKRPREANPI-SSSLACSRLP 201
             +K                   GE+  KR RE  P  SSSL C+R+P
Sbjct:    91 TKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIP 136

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096169 SRS6 "AT3G54430" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 58/156 (37%), Positives = 86/156 (55%)

Query:   105 FMMVRSSSGIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKXXXX 164
             F  V  ++ +G  + C+DCGN+AKK+C   RCRTCCKSRG++C THVKSTW+ +S     
Sbjct:    27 FAAVEDNNTVGEKV-CRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSS 85

Query:   165 XXXXXXXXXXXXXXGETNKRPREANPISSSLACSRLPANASGFEVAENLPGEVSTQAVFR 224
                               K  ++++P + SL  +       GF   E LPG++   AVF+
Sbjct:    86 SSPSERKKKL--------KIDKQSSP-NVSLLPTTTSRQERGFR--EGLPGKIEAPAVFK 134

Query:   225 CVKVSGIDDSED-QFAYQTSVNIGGHLFKGILYDQG 259
               +V+ I ++E  +  YQ +V I GH+FKG L+  G
Sbjct:   135 RTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      344       264   0.00092  114 3  11 22  0.36    34
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.91u 0.10s 18.01t   Elapsed:  00:00:01
  Total cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:01
  Start:  Sat May 11 03:41:24 2013   End:  Sat May 11 03:41:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
pfam05142	155	pfam05142, DUF702, Domain of unknown function (DUF	2e-79
TIGR01623	43	TIGR01623, put_zinc_LRP1, putative zinc finger dom	4e-25
TIGR01624	50	TIGR01624, LRP1_Cterm, LRP1 C-terminal domain	5e-21

>gnl|CDD|218464 pfam05142, DUF702, Domain of unknown function (DUF702)

 Score =  239 bits (611), Expect = 2e-79
 Identities = 94/154 (61%), Positives = 111/154 (72%), Gaps = 4/154 (2%)

Query: 113 GIGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLA--L 170
           G  GG+SCQDCGNQAKKDC HMRCRTCCKSRGFDCQTHVKSTWV A+KRRE+QQQLA   
Sbjct: 1   GGSGGISCQDCGNQAKKDCTHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQQQLAAAT 60

Query: 171 QQQRLQLRGETNKRPREANPI-SSSLACSRLP-ANASGFEVAENLPGEVSTQAVFRCVKV 228
                      +KRPR+      SSL+ +R P   +       + P EVS+ AVFRCV+V
Sbjct: 61  SNAASSAASAPSKRPRDLLSNAQSSLSSTRTPSGTSPQGTGTSSFPPEVSSPAVFRCVRV 120

Query: 229 SGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPES 262
           S +DD + ++AYQT+VNIGGH+FKGILYDQGPE 
Sbjct: 121 SSVDDGDAEYAYQTTVNIGGHVFKGILYDQGPEH 154

Members of this family are found in various putative zinc finger proteins. Length = 155

>gnl|CDD|130684 TIGR01623, put_zinc_LRP1, putative zinc finger domain, LRP1 type

 Score = 95.4 bits (237), Expect = 4e-25
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 119 SCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKR 161
            CQDCGNQAKK+C   RCRTCCKSRGF C THVKSTW+ A++R
Sbjct: 1   VCQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKSTWIPAARR 43

This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs. Length = 43

>gnl|CDD|233497 TIGR01624, LRP1_Cterm, LRP1 C-terminal domain

 Score = 84.5 bits (209), Expect = 5e-21
 Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 213 LPGEVSTQAVFRCVKVSGIDDSED-QFAYQTSVNIGGHLFKGILYDQGP 260
            PGEVS  AVF+CV+V+ IDD E  ++AYQ +V IGGH+FKG L+DQG 
Sbjct: 2   FPGEVSAPAVFKCVRVTAIDDGEQAEYAYQATVTIGGHVFKGFLHDQGL 50

This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF05142	154	DUF702: Domain of unknown function (DUF702) ; Inte	100.0
TIGR01624	50	LRP1_Cterm LRP1 C-terminal domain. This model repr	100.0
TIGR01623	43	put_zinc_LRP1 putative zinc finger domain, LRP1 ty	99.96

>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function

Probab=100.00  E-value=1.8e-82  Score=554.34  Aligned_cols=149  Identities=66%  Similarity=1.116  Sum_probs=129.5

Q ss_pred             CCCCcccccccccccccCCCccccccccCCCCccCCCccceeeecchhhHHHHHHHHHHHhhh--hcCCCCCCCCCCC-C
Q 019213          114 IGGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLALQQQRLQ--LRGETNKRPREAN-P  190 (344)
Q Consensus       114 ~~gg~~CQDCGNQAKKDC~h~RCRTCCKSRGFdC~THVKSTWVPAarRRERqq~~~~~~~~~~--~~g~~~Kr~r~~~-~  190 (344)
                      ++|+++||||||||||||+|||||||||||||||+||||||||||+|||||||++++++++++  .....+||||++. .
T Consensus         1 ~~gg~~CqdCGNqAkk~C~~~rCRtCCk~rg~~C~tHvksTWVPA~~rRer~~~~~~~~~~~~~~~~~~~~kr~r~~~~~   80 (154)
T PF05142_consen    1 GSGGISCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQQQLAAAQQQQQGSQGSSGPKRPRELSNS   80 (154)
T ss_pred             CCCCcchhhhcchhhcCCCcchhhhhhccCCCCCccceeccccchhhhchhhhcccccccccccCcccCCcCCccccccc
Confidence            357899999999999999999999999999999999999999999999999999988765442  2455699999863 3


Q ss_pred             CCCcccccCCCCC--CCcchhhccCCccccccceeeEEEeeccCCCccceeEEEEEeecceeeeeeecccCCCCC
Q 019213          191 ISSSLACSRLPAN--ASGFEVAENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPEST  263 (344)
Q Consensus       191 ~~ss~~~t~~~~t--sSg~e~~e~fP~eV~s~AvFRCVRVssvdd~e~E~AYQt~V~IgGHVFKGiLYDqG~e~~  263 (344)
                      ..+++++|+++++  +++++.. +||+|||||||||||||++|||+||||||||+|+||||||||||||||||+.
T Consensus        81 ~~~~~~~t~~~~~~~~~~~~~~-~fP~eV~spAvFRCVRVssiDdgedE~AYQTaV~IGGHVFKGiLYDqG~~~~  154 (154)
T PF05142_consen   81 TQSSTSCTSTSNGTSPSSLETG-SFPAEVSSPAVFRCVRVSSIDDGEDEYAYQTAVNIGGHVFKGILYDQGPESQ  154 (154)
T ss_pred             CCCCccccccCCCcccccchhc-cCChhhcccceEEEEEEecccCcccceeeEEeEEECCEEeeeeeeccCCCCC
Confidence            4445555554443  4477766 8999999999999999999999999999999999999999999999999863

>TIGR01624 LRP1_Cterm LRP1 C-terminal domain

Probab=100.00  E-value=1.2e-34  Score=213.75  Aligned_cols=49  Identities=61%  Similarity=1.121  Sum_probs=47.9

Q ss_pred             cCCccccccceeeEEEeeccCCCcc-ceeEEEEEeecceeeeeeecccCC
Q 019213          212 NLPGEVSTQAVFRCVKVSGIDDSED-QFAYQTSVNIGGHLFKGILYDQGP  260 (344)
Q Consensus       212 ~fP~eV~s~AvFRCVRVssvdd~e~-E~AYQt~V~IgGHVFKGiLYDqG~  260 (344)
                      +||+||++|||||||||++|||+|+ ||||||+|+|||||||||||||||
T Consensus         1 ~fP~ev~s~AvFrcvRvs~idd~~~~e~aYQt~V~IgGHvFkGiLyDqG~   50 (50)
T TIGR01624         1 GFPGEVSAPAVFKCVRVTAIDDGEQAEYAYQATVTIGGHVFKGFLHDQGL   50 (50)
T ss_pred             CCccccccceEEEEEEEeccCCCCCceEEEEEEEEECceEEeeEEeccCC
Confidence            4999999999999999999999999 999999999999999999999997

This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.

>TIGR01623 put_zinc_LRP1 putative zinc finger domain, LRP1 type

Probab=99.96  E-value=3.2e-31  Score=190.76  Aligned_cols=43  Identities=74%  Similarity=1.478  Sum_probs=42.1

Q ss_pred             ccccccccccccCCCccccccccCCCCccCCCccceeeecchh
Q 019213          119 SCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKR  161 (344)
Q Consensus       119 ~CQDCGNQAKKDC~h~RCRTCCKSRGFdC~THVKSTWVPAarR  161 (344)
                      +||||||||||+|.|+|||||||+|+|||+||||||||||+||
T Consensus         1 ~C~~CgNpa~k~C~~~~CRtCCK~r~~DC~tHv~stw~p~~~r   43 (43)
T TIGR01623         1 VCQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKSTWIPAARR   43 (43)
T ss_pred             ChhhccchhhCCCchhhhhHHhcccCcCCcchhcccccccccC
Confidence            5999999999999999999999999999999999999999997

This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 27/209 (12%), Positives = 60/209 (28%), Gaps = 50/209 (23%)

Query: 33  NWFW--YKNEDISYKQGASFELWQQQAELLLQQRQQQQQDLYSSSAAAGLGMGPISR-SA 89
            +     K E              +Q  ++ +   +Q+  LY+ +         +SR   
Sbjct: 92  KFLMSPIKTEQ-------------RQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQP 136

Query: 90  INVVGGIDNSSSRSAFMMVRSSSGIG-GGMSCQDCGNQAKKDC-AHMRCRTCCKSRGFDC 147
              +        R A + +R +  +   G+     G    K   A   C +       D 
Sbjct: 137 YLKL--------RQALLELRPAKNVLIDGVL--GSG----KTWVALDVCLSYKVQCKMDF 182

Query: 148 QTHVKSTWVAASKRREKQQQLALQQQRLQLRGETNKRPREANPISSSLACSRLPANASGF 207
           +      W+        +  L    Q+L  + + N   R  +  +  L    + A     
Sbjct: 183 KIF----WLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 208 EVAENLPGEVSTQAVFRCVKVSGIDDSED 236
             ++             C+ V  + + ++
Sbjct: 238 LKSKPYE---------NCLLV--LLNVQN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1sisa_	35	Toxin I5a {Scorpion (Buthus eupeus) [TaxId: 34648]	81.88

>d1sisa_ g.3.7.2 (A:) Toxin I5a {Scorpion (Buthus eupeus) [TaxId: 34648]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Short-chain scorpion toxins
domain: Toxin I5a
species: Scorpion (Buthus eupeus) [TaxId: 34648]

Probab=81.88  E-value=0.085  Score=34.74  Aligned_cols=13  Identities=46%  Similarity=1.502  Sum_probs=10.6

Q ss_pred             ccccccccCCCCcc
Q 019213          134 MRCRTCCKSRGFDC  147 (344)
Q Consensus       134 ~RCRTCCKSRGFdC  147 (344)
                      ++||+||+.|| .|
T Consensus        14 ~kcr~ccgg~g-kc   26 (35)
T d1sisa_          14 KKCRDCCGGNG-KC   26 (35)
T ss_dssp             HHHHHHTTTCE-EE
T ss_pred             HHHHHHhCCCc-cc
Confidence            46999999998 44