Citrus Sinensis ID: 019215

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MGKLLCDSTTVAAETFQTASPTVSWRDPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccEEccccccHHHHHcccccccccEEEEEEEEcccEEEEEEccccccccccccHHHHHHHHHHHccEEEEEEEccccccccccccEEEcccccccccccccEEEEEEccccccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccccccccEccccccccccccccHHHHcccHHHHHHHHHHHHHcccEEcccccccccEEEEEEccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccEccccccHHHHEEEccccccccEEEEEEEccccEEEEEccccccEEHccccccccccccHHHHHHEEEEEccccccccccccEEEcccccccccccccEEEEEccccccccccccccccEEcccccccHccEEEEc
Coil and Loop (DISEMBL)
mgkllcdsTTVAAETfqtasptvswrdpsptvdlvdqsadvtasTTSIGVAAWEEVIGLEEQQRRHLERLHskgvlwkhpedqsrSIVFKLshggevsadgnclFTASQKAMTARDVDARELRRRTVRRFLEdlgsvgegQREMINDAIRHMyspdlkngwgiHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIykercipvsdgpsWAKYMLisgshddeyDIITLQytedgllsvdenreghaaafgdDIAIECLATEFNREIYVVQahgsdamvdeencvfflphrprsdiceppiflfmkgtgwcgagadhyePLIANACSVISHEKVAMVL
Flexible Loop (DISEMBL)
MGKLLCDSTTVAAEtfqtasptvswrdpsPTVDLVDQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSkgvlwkhpedqSRSIVFKLSHGGEVSADGNCLFTasqkamtardvdarelrRRTVRrfledlgsvgegqREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Low Complexity Region (SEG)
MGKLLCDSTTVAAETFQTASPTVSWRDPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDArelrrrtvrrFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Disordered region (IsUnstruct)
***************************************DVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKH*****RSIVFKLSHGGEVSADGNCLFTASQ************LRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHE******
Disordered Region (DISOPRED)
**KL***STTVAAETFQTASPTVSWRDPSPT*DLVD********TTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAM*********LRRRTVRRFLEDLG**********NDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Disordered Region (DISEMBL)
MGKLLCDSTTVAAETFQTASPTVSWRDPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Disordered Region (DISPRO)
************************W*DPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKLLCDSTTVAAETFQTASPTVSWRDPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
224075537	343	predicted protein [Populus trichocarpa]	0.982	0.985	0.773	1e-153
356499689	358	PREDICTED: uncharacterized protein LOC10	0.988	0.949	0.770	1e-152
356568927	356	PREDICTED: uncharacterized protein LOC10	0.988	0.955	0.761	1e-151
224053517	346	predicted protein [Populus trichocarpa]	0.982	0.976	0.787	1e-149
357502921	439	hypothetical protein MTR_7g022390 [Medic	1.0	0.783	0.735	1e-147
449484674	359	PREDICTED: uncharacterized LOC101215717	0.991	0.949	0.745	1e-147
449468818	359	PREDICTED: uncharacterized protein LOC10	0.991	0.949	0.748	1e-147
297807325	354	hypothetical protein ARALYDRAFT_909262 [	0.976	0.949	0.732	1e-143
147812521	341	hypothetical protein VITISV_032094 [Viti	0.976	0.985	0.719	1e-142
359473784	341	PREDICTED: uncharacterized protein LOC10	0.956	0.964	0.707	1e-141

>gi|224075537|ref|XP_002304672.1| predicted protein [Populus trichocarpa] gi|222842104|gb|EEE79651.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/349 (77%), Positives = 297/349 (85%), Gaps = 11/349 (3%)

Query: 1   MGKLLCDSTTVAAET-FQT-ASPTVSWRD-PSPTVDLVDQSADVTASTTSIGVAAWEEVI 57
           MGKLLCDST   AET FQT  SP V WRD P  TVDL +Q+  + A  T      WE+VI
Sbjct: 1   MGKLLCDSTAAVAETTFQTPTSPAVHWRDDPKATVDLSEQTLTIAAQPT------WEDVI 54

Query: 58  GLEEQQRRHLERLHSKGVLWKHP--EDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTAR 115
           GLE+QQRRHL+RL +KGVLWKHP  +D   ++VF+LSHGG+VSADGNCLFTASQ+AM  R
Sbjct: 55  GLEDQQRRHLQRLQTKGVLWKHPKNDDSYPAVVFRLSHGGDVSADGNCLFTASQRAMAVR 114

Query: 116 DVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKK 175
           ++DAR+LR RTVRRF+ED GSV   +RE+IN AI+HMYSPDLKNGWGIHVVQEVKLLA K
Sbjct: 115 EMDARKLRSRTVRRFVEDFGSVSGEEREVINGAIKHMYSPDLKNGWGIHVVQEVKLLANK 174

Query: 176 EDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITL 235
           EDR  LDSAI+ELV LGMQREMAAESIYKERCI V+DGPSWAKYMLISGS DDE DIITL
Sbjct: 175 EDRGSLDSAIEELVLLGMQREMAAESIYKERCIAVNDGPSWAKYMLISGSPDDEDDIITL 234

Query: 236 QYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLP 295
           QYTE+GLLSVDENREGHAAAFGDDIAIECLATEF REIYVVQAHGSDAMVDEENCVFFLP
Sbjct: 235 QYTEEGLLSVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLP 294

Query: 296 HRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
           HRPR++ICE P FLFMKGTGWCGAGADHYEPLIA   S++S EKVA VL
Sbjct: 295 HRPRTEICEHPFFLFMKGTGWCGAGADHYEPLIAQPSSLVSQEKVAFVL 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499689|ref|XP_003518669.1| PREDICTED: uncharacterized protein LOC100794218 [Glycine max]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/362 (77%), Positives = 301/362 (83%), Gaps = 22/362 (6%)

Query: 1   MGKLLCDSTTVAAETFQTASPT-VSWRDPSP----TVDLVDQSADVTASTTSIGVAAWEE 55
           MGKLLCDSTTVA E FQ + P  + WRDP P    TVDLV  SA+V     +     WEE
Sbjct: 1   MGKLLCDSTTVA-EPFQGSPPAALPWRDPKPEPIGTVDLV-VSANVGGGPFA--GGGWEE 56

Query: 56  VIGLEEQQRRHLERLHSKGVLWKHPEDQS-------------RSIVFKLSHGGEVSADGN 102
           V+GLEEQQRRHL+RLH+KGVLWK P ++              RS+VF+LSHGGEVSADGN
Sbjct: 57  VVGLEEQQRRHLQRLHAKGVLWKPPPEEEDSSSSPPPSSSALRSVVFRLSHGGEVSADGN 116

Query: 103 CLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWG 162
           CLFTAS+KAM+  DVDARELRRRTV RFLEDLGSV   +RE I+DAIRHMYSPDLKNGWG
Sbjct: 117 CLFTASRKAMSGEDVDARELRRRTVARFLEDLGSVSFEEREAIDDAIRHMYSPDLKNGWG 176

Query: 163 IHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLI 222
           IHVVQEVKLLAKKEDR  LDSAI+ELV LGMQREMAAESIYKERC+PV+DGPSWAKYMLI
Sbjct: 177 IHVVQEVKLLAKKEDRFALDSAIEELVHLGMQREMAAESIYKERCVPVNDGPSWAKYMLI 236

Query: 223 SGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSD 282
           SGS DDEYDIITLQYTE+GLLSVDENREG AAAFGDDIAIECLATEF REIYVVQAHGSD
Sbjct: 237 SGSPDDEYDIITLQYTEEGLLSVDENREGRAAAFGDDIAIECLATEFKREIYVVQAHGSD 296

Query: 283 AMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAM 342
           AMVDEENCVFFLPHRPRS I EPP FLFMKGTGWCGAGADHYEPLIA+  +  S EKVA+
Sbjct: 297 AMVDEENCVFFLPHRPRSRINEPPFFLFMKGTGWCGAGADHYEPLIAHPSAFGSQEKVAV 356

Query: 343 VL 344
           VL
Sbjct: 357 VL 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568927|ref|XP_003552659.1| PREDICTED: uncharacterized protein LOC100815356 [Glycine max]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/360 (76%), Positives = 301/360 (83%), Gaps = 20/360 (5%)

Query: 1   MGKLLCDSTTVAAETFQTASPT-VSWRDPSP----TVDLVDQSADVTASTTSIGVAAWEE 55
           MGKLLCDST+VA E FQ + P  + WR+P P    TVDLV   A+V  +  + G   WE+
Sbjct: 1   MGKLLCDSTSVA-EPFQGSPPAALPWREPKPEPIGTVDLV-VPANVGGAPFAGG--GWED 56

Query: 56  VIGLEEQQRRHLERLHSKGVLWKHPEDQS-----------RSIVFKLSHGGEVSADGNCL 104
           V+GLEEQQRRHL+RLH+KGVLWK P ++            RS+VF+LSHGGEVSADGNCL
Sbjct: 57  VVGLEEQQRRHLQRLHAKGVLWKPPPEEEDSSSPLSSSALRSVVFRLSHGGEVSADGNCL 116

Query: 105 FTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIH 164
           FTAS+KAM   DVDARELRRRTV RFLEDLGSV   +RE I++AIRHMYSPDLKNGWGIH
Sbjct: 117 FTASRKAMGGEDVDARELRRRTVARFLEDLGSVSFEEREAIDNAIRHMYSPDLKNGWGIH 176

Query: 165 VVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISG 224
           VVQEVKLLAKKEDR  LDSAI+ELV LGMQREMAAESIYKERC+ V+DGPSWAKYMLISG
Sbjct: 177 VVQEVKLLAKKEDRFALDSAIEELVHLGMQREMAAESIYKERCVSVNDGPSWAKYMLISG 236

Query: 225 SHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAM 284
           S DDEYDIITLQYTE+GLLSVDENREG AAAFGDDIAIECLATEF REIYVVQAHGSDAM
Sbjct: 237 SPDDEYDIITLQYTEEGLLSVDENREGRAAAFGDDIAIECLATEFKREIYVVQAHGSDAM 296

Query: 285 VDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
           VDEENCVFFLPHRPRS I EPP FLFMKGTGWCGAGADHYEPLIA+  + +S EKVA+VL
Sbjct: 297 VDEENCVFFLPHRPRSRITEPPFFLFMKGTGWCGAGADHYEPLIAHPSAFVSQEKVAVVL 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053517|ref|XP_002297852.1| predicted protein [Populus trichocarpa] gi|222845110|gb|EEE82657.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/349 (78%), Positives = 302/349 (86%), Gaps = 11/349 (3%)

Query: 1   MGKLLCDSTTVAAET-FQT-ASPTVSWRD-PSPTVDLVDQSADVTASTTSIGVAAWEEVI 57
           MGKLLCDSTT  AET FQT  SP V WRD P  TVD  +Q+  ++  TT      WE+VI
Sbjct: 1   MGKLLCDSTTTVAETTFQTPTSPIVHWRDDPKVTVDNSEQTLTISEQTT------WEDVI 54

Query: 58  GLEEQQRRHLERLHSKGVLWKHPE-DQSRSIV-FKLSHGGEVSADGNCLFTASQKAMTAR 115
           GLE+QQRRHL+RL SKGVLWKHP+ D+S  +V FKLSHGG+VSADGNCLFTASQ+AM A 
Sbjct: 55  GLEDQQRRHLQRLQSKGVLWKHPKNDESYPVVVFKLSHGGDVSADGNCLFTASQRAMVAS 114

Query: 116 DVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKK 175
           ++DARELRRRT RRF+ED GSV   +RE IN+AI+HMYSPDLKNGWGIHVVQEVKLLAKK
Sbjct: 115 EMDARELRRRTARRFVEDFGSVSGEEREAINNAIKHMYSPDLKNGWGIHVVQEVKLLAKK 174

Query: 176 EDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITL 235
           EDRV LDSAIDELV LGMQREMAAESIYKERC+ V+DGPSWAKYM ISGSHDDEYDIITL
Sbjct: 175 EDRVALDSAIDELVLLGMQREMAAESIYKERCMAVNDGPSWAKYMSISGSHDDEYDIITL 234

Query: 236 QYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLP 295
           QYTE+GLL +DENR+GHAAAFGDDIAIECLATEF REIYVVQAHGSD MVDEENCVFFLP
Sbjct: 235 QYTEEGLLYIDENRKGHAAAFGDDIAIECLATEFKREIYVVQAHGSDGMVDEENCVFFLP 294

Query: 296 HRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
           HRPRS+ICEPP FLFMKGTGWCGAGADHYEPLIA+  S +S EKVA+VL
Sbjct: 295 HRPRSEICEPPFFLFMKGTGWCGAGADHYEPLIAHPSSHLSQEKVAVVL 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502921|ref|XP_003621749.1| hypothetical protein MTR_7g022390 [Medicago truncatula] gi|355496764|gb|AES77967.1| hypothetical protein MTR_7g022390 [Medicago truncatula]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/359 (73%), Positives = 296/359 (82%), Gaps = 15/359 (4%)

Query: 1   MGKLLCDSTTVAAETFQ----TASPTVSWRDPSPTVDLVDQSADVT-----ASTTSIGVA 51
           MGKLLCDSTTVAAE FQ    +A P +  + P+  +D +  + D+      ++    G  
Sbjct: 1   MGKLLCDSTTVAAEPFQGSPASALPWIDSKSPTTQMDTIGTTVDLVVPVNLSADAFTGGG 60

Query: 52  AWEEVIGLEEQQRRHLERLHSKGVLWKHP--EDQS----RSIVFKLSHGGEVSADGNCLF 105
            WE+V+GLE+ QRRHL+RLH+KGVLWK P  ED S    RS+VF+LSHGGEV +DGNCLF
Sbjct: 61  GWEDVVGLEDIQRRHLQRLHAKGVLWKPPATEDSSPSDLRSVVFRLSHGGEVESDGNCLF 120

Query: 106 TASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHV 165
           TAS+KAM   DVDA+ELRRRTV+RFLED GSV   + E I+DAIRHMYSPDL  GWGIHV
Sbjct: 121 TASRKAMEMEDVDAKELRRRTVKRFLEDYGSVSFEEGEAIDDAIRHMYSPDLMFGWGIHV 180

Query: 166 VQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGS 225
           VQEVKLLAKKEDR  LDSAIDELV LGMQREMAAESIYKERCIPV+DG +WAKYMLISGS
Sbjct: 181 VQEVKLLAKKEDRFSLDSAIDELVHLGMQREMAAESIYKERCIPVNDGQTWAKYMLISGS 240

Query: 226 HDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMV 285
            DDEYDIITLQYTE+GLLSVDENREG AAAFGDDIAIECL+TEF REIYVVQAHGSDAMV
Sbjct: 241 PDDEYDIITLQYTEEGLLSVDENREGRAAAFGDDIAIECLSTEFKREIYVVQAHGSDAMV 300

Query: 286 DEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
           DEENCVFFLPHRPRS+I E P FLFMKGTGWCGAGADHYEPLIA+  +V+S EKVA+VL
Sbjct: 301 DEENCVFFLPHRPRSEIAELPFFLFMKGTGWCGAGADHYEPLIAHPSAVVSQEKVAVVL 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484674|ref|XP_004156948.1| PREDICTED: uncharacterized LOC101215717 [Cucumis sativus]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/362 (74%), Positives = 305/362 (84%), Gaps = 21/362 (5%)

Query: 1   MGKLLCDSTTVAAETFQTASPTVSWRDPSPT--------VDLVDQSADVTASTTSIGVAA 52
           MGKLLCDSTT  AE+F T SP V+WRD + +        +DL+DQ+   TA+ T++   A
Sbjct: 1   MGKLLCDSTTAVAESFPTTSPAVNWRDQNSSSVIDANGALDLLDQT---TATATAVVPTA 57

Query: 53  WEEVIGLEEQQRRHLERLHSKGVLWKHPEDQS---------RSIVFKLSHGGEVSADGNC 103
           W++V+GLE+QQRR L+RLH+KGVLWKHPE+ +         RS+VF+LSHGGEVS+DGNC
Sbjct: 58  WDDVLGLEDQQRRQLQRLHAKGVLWKHPEENTIDSSSSMSLRSVVFRLSHGGEVSSDGNC 117

Query: 104 LFTASQKAMT-ARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWG 162
           LFTAS KAM  AR+VDARE+RRRTVRRFL+D GS    + E+IN+AIRH+YSPDLKNGWG
Sbjct: 118 LFTASHKAMNMAREVDAREIRRRTVRRFLDDFGSARLEEVEVINEAIRHLYSPDLKNGWG 177

Query: 163 IHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLI 222
           IHVVQEVK LAKKEDR  LD AIDELVQLGMQRE AAESIYKERCIP++DG SWAKYM I
Sbjct: 178 IHVVQEVKFLAKKEDRPALDGAIDELVQLGMQRETAAESIYKERCIPINDGASWAKYMSI 237

Query: 223 SGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSD 282
           SGS  DE+DIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEF REIYVVQAHGSD
Sbjct: 238 SGSLGDEFDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSD 297

Query: 283 AMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAM 342
           AMVDEENCVFFLPHRPRS+ICE P FLFMKGTGWCGAGADHYEPLIA+  S++S EKVAM
Sbjct: 298 AMVDEENCVFFLPHRPRSEICEVPFFLFMKGTGWCGAGADHYEPLIAHCSSIVSQEKVAM 357

Query: 343 VL 344
           VL
Sbjct: 358 VL 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468818|ref|XP_004152118.1| PREDICTED: uncharacterized protein LOC101215717 [Cucumis sativus]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/362 (74%), Positives = 305/362 (84%), Gaps = 21/362 (5%)

Query: 1   MGKLLCDSTTVAAETFQTASPTVSWRDPSPT--------VDLVDQSADVTASTTSIGVAA 52
           MGKLLCDSTT  AE+F T SP V+WRD + +        +DL+DQ+   TA+ T++   A
Sbjct: 1   MGKLLCDSTTAVAESFPTTSPAVNWRDQNSSSVIDANGALDLLDQT---TATATAVVPTA 57

Query: 53  WEEVIGLEEQQRRHLERLHSKGVLWKHPEDQS---------RSIVFKLSHGGEVSADGNC 103
           W++V+GLE+QQRR L+RLH+KGVLWKHPE+ +         RS+VF+LSHGGEVS+DGNC
Sbjct: 58  WDDVLGLEDQQRRQLQRLHAKGVLWKHPEENTIDSSSSMSLRSVVFRLSHGGEVSSDGNC 117

Query: 104 LFTASQKAMT-ARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWG 162
           LFTAS KAM  AR+VDARELRRRTVRRFL+D GS    + E+IN+AIRH+YSPDLKNGWG
Sbjct: 118 LFTASHKAMNMAREVDARELRRRTVRRFLDDFGSARLEEVEVINEAIRHLYSPDLKNGWG 177

Query: 163 IHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLI 222
           IHVVQEVK LAKKEDR  LD AIDELVQLGMQRE AAESIYKERCIP++DG SWAKYM I
Sbjct: 178 IHVVQEVKFLAKKEDRPALDGAIDELVQLGMQRETAAESIYKERCIPINDGASWAKYMSI 237

Query: 223 SGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSD 282
           SGS  DE+DIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEF REIYVVQAHGSD
Sbjct: 238 SGSLGDEFDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSD 297

Query: 283 AMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAM 342
           AMVDEENCVFFLPHRPRS+ICE P FLFMKGTGWCGAGADHYEPLIA+  S++S EKVAM
Sbjct: 298 AMVDEENCVFFLPHRPRSEICEVPFFLFMKGTGWCGAGADHYEPLIAHCSSIVSQEKVAM 357

Query: 343 VL 344
           VL
Sbjct: 358 VL 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807325|ref|XP_002871546.1| hypothetical protein ARALYDRAFT_909262 [Arabidopsis lyrata subsp. lyrata] gi|297317383|gb|EFH47805.1| hypothetical protein ARALYDRAFT_909262 [Arabidopsis lyrata subsp. lyrata]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/362 (73%), Positives = 300/362 (82%), Gaps = 26/362 (7%)

Query: 1   MGKLLCDSTTVAAETFQTASPTVSWRDPSPT------VDLVDQSAD----------VTAS 44
           MGKLLCDST     TFQ+ SPTV WR+PS        VDLVDQSA           + AS
Sbjct: 1   MGKLLCDSTA----TFQSPSPTVPWREPSTAAVSLDDVDLVDQSAAAAAVEAVEKKMAAS 56

Query: 45  TTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHP--EDQSRSIVFKLSHGGEVSADGN 102
           TT+    AW+EV GLEE QRRHL RLH++GVLWKHP  ++ S S+VF+LSHGGEVS+DGN
Sbjct: 57  TTT----AWDEVFGLEESQRRHLSRLHARGVLWKHPGKDESSASVVFRLSHGGEVSSDGN 112

Query: 103 CLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWG 162
           CLFTASQKAM AR +DAR+LRRRTVRRFLED  S  E ++E+I DAIRHMYSPDLK+GWG
Sbjct: 113 CLFTASQKAMEARGIDARDLRRRTVRRFLEDFRSANEEEKEVITDAIRHMYSPDLKSGWG 172

Query: 163 IHVVQEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLI 222
           IH+VQE KLLAKK++R  LDSAI+EL+Q GMQRE AAESIY+ERC+PV+DG SWAKYM I
Sbjct: 173 IHIVQEEKLLAKKDERESLDSAIEELIQTGMQRETAAESIYRERCLPVNDGLSWAKYMSI 232

Query: 223 SGSHDDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSD 282
           SGS +DEYDIITLQYTEDGLLSV+ENREGHAAAFGDDIAIECLATEF REIYVVQAHGSD
Sbjct: 233 SGSTEDEYDIITLQYTEDGLLSVEENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSD 292

Query: 283 AMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAM 342
            MV+EENCVFFLPH+PRS++ E P+FLFMKGTGWCG GADHYEPLIAN   +ISHEKVA+
Sbjct: 293 GMVEEENCVFFLPHKPRSEVLEVPVFLFMKGTGWCGGGADHYEPLIANPSPLISHEKVAL 352

Query: 343 VL 344
           VL
Sbjct: 353 VL 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812521|emb|CAN77335.1| hypothetical protein VITISV_032094 [Vitis vinifera]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/349 (71%), Positives = 285/349 (81%), Gaps = 13/349 (3%)

Query: 1   MGKLLCDSTTVAAETFQTASPTVSWRDPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLE 60
           MGKLL DS+    E+FQT  PT  WRDP  T    ++  DV    T      WE V GL+
Sbjct: 1   MGKLLYDSSG-GGESFQTPPPTGHWRDPQVTSVDSNEVVDVVDQVT------WENVSGLQ 53

Query: 61  EQQRRHLERLHSKGVLWKHPEDQS-----RSIVFKLSHGGEVSADGNCLFTASQKAMTAR 115
           +QQRRHL+R+H KGVLWKHP+ +S     +S+VF+LSHGG+V  DGNCLFTAS+KAM   
Sbjct: 54  DQQRRHLQRIHQKGVLWKHPDGESSPAAAKSVVFRLSHGGDVDPDGNCLFTASKKAMRC- 112

Query: 116 DVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKK 175
           ++DARELRRRTV+RFLEDLGS+   +RE  NDAI+HMYSPDL++GWGIHV+QEVKLLA+K
Sbjct: 113 EIDARELRRRTVKRFLEDLGSLSSVERESANDAIKHMYSPDLRSGWGIHVIQEVKLLARK 172

Query: 176 EDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITL 235
           EDR GLD+A+ EL+ LGMQREMAAESIYKERCI V DG SWAKYM ISGS DDEYDII+L
Sbjct: 173 EDREGLDAAVGELLDLGMQREMAAESIYKERCIAVDDGSSWAKYMSISGSPDDEYDIISL 232

Query: 236 QYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLP 295
           QYTE+GLL+VDENREGHAAAFGDDIAIECLATEF REI+VVQAHGSDAMVDEENCVFFLP
Sbjct: 233 QYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIFVVQAHGSDAMVDEENCVFFLP 292

Query: 296 HRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
           HRPR  ICEPP FLFMKGTGW GAGADHYEPLIA+  S +S EKVA VL
Sbjct: 293 HRPRGRICEPPFFLFMKGTGWSGAGADHYEPLIAHPSSAVSQEKVAWVL 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473784|ref|XP_003631358.1| PREDICTED: uncharacterized protein LOC100253975 isoform 2 [Vitis vinifera]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/356 (70%), Positives = 286/356 (80%), Gaps = 27/356 (7%)

Query: 1   MGKLLCDSTTVAAETFQTASPTVSWRDPSPT-------VDLVDQSADVTASTTSIGVAAW 53
           MGKLL DS+    E+F+T  PT  WRDP  T       VD+VDQ               W
Sbjct: 1   MGKLLYDSSG-GGESFKTPPPTGHWRDPQVTSVDSIEVVDVVDQ-------------VTW 46

Query: 54  EEVIGLEEQQRRHLERLHSKGVLWKHPEDQS-----RSIVFKLSHGGEVSADGNCLFTAS 108
           E V GL++QQRRHL+R+H KGVLWKHP+ +S     +S+VF+LSHGG+V  DGNCLFTAS
Sbjct: 47  ENVSGLQDQQRRHLQRIHQKGVLWKHPDGESSPAAAKSVVFRLSHGGDVDPDGNCLFTAS 106

Query: 109 QKAMTARDVDARELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQE 168
           +KAM   ++DARELRRRTV+RFLEDLGS+   +RE  NDAI+HMYSPDL++GWGIHV+QE
Sbjct: 107 KKAMRC-EIDARELRRRTVKRFLEDLGSLSSVERESANDAIKHMYSPDLRSGWGIHVIQE 165

Query: 169 VKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDD 228
           VKLLA+KEDR GLD+A+ EL+ LGMQREMAAESIYKERCI V DG SWAKYM ISGS DD
Sbjct: 166 VKLLARKEDREGLDAAVGELLDLGMQREMAAESIYKERCIAVDDGSSWAKYMSISGSPDD 225

Query: 229 EYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEE 288
           EYDII+LQYTE+GLL+VDENREGHAAAFGDDIAIECLATEF REI+VVQAHGSDAMVDEE
Sbjct: 226 EYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIFVVQAHGSDAMVDEE 285

Query: 289 NCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
           NCVFFLPHRPR  ICEPP FLFMKGTGW GAGADHYEPLIA+  S +S EKVA VL
Sbjct: 286 NCVFFLPHRPRGRICEPPFFLFMKGTGWSGAGADHYEPLIAHPSSAVSQEKVAWVL 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2179882	354	AT5G13100 [Arabidopsis thalian	0.988	0.960	0.703	7.1e-132

TAIR|locus:2179882 AT5G13100 [Arabidopsis thaliana (taxid:3702)]

 Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
 Identities = 252/358 (70%), Positives = 286/358 (79%)

Query:     1 MGKLLCDSTTVAAETFQTASPTVSWRDPSPT------VDLVDQSA-----DVTASTTSIG 49
             MGKLLCDST     TFQ+ SPTV WR+PS        VDLVDQSA     D    T +  
Sbjct:     1 MGKLLCDSTA----TFQSPSPTVPWREPSTVAVSLEDVDLVDQSAAAAAVDAVEKTMAAA 56

Query:    50 VA-AWEEVIGLEEQQRRHLERLHSKGVLWKHP--EDQSRSIVFKLSHGGEVSADGNCLFT 106
                AW+EV GLEE QRRHL RLH++GVLWKHP  ++ S S+VF+LSHGGEVS+DGNCLFT
Sbjct:    57 TTTAWDEVFGLEEAQRRHLSRLHARGVLWKHPGKDESSASVVFRLSHGGEVSSDGNCLFT 116

Query:   107 ASQKAMTARDVDAXXXXXXXXXXFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVV 166
             ASQKAM AR +DA          FLED  S  E ++E+I DAIRHMYSPDLK+GWGIH+V
Sbjct:   117 ASQKAMEARGIDARDLRRRTVRRFLEDFRSASEEEKEVITDAIRHMYSPDLKSGWGIHIV 176

Query:   167 QEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSH 226
             QE KLLAKK++R  LDSAI+EL+Q+GM RE AAESIY+ERC+PV+DG SW+KYM ISGS 
Sbjct:   177 QEEKLLAKKDERESLDSAIEELLQIGMHRETAAESIYRERCLPVNDGLSWSKYMSISGST 236

Query:   227 DDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVD 286
             +DEYDIITLQYTEDGLLSVDENREG AAAFGDDIAIECLATEF REIYVVQAHGSD MV+
Sbjct:   237 EDEYDIITLQYTEDGLLSVDENREGRAAAFGDDIAIECLATEFKREIYVVQAHGSDGMVE 296

Query:   287 EENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
             EENCVFFLPH+PRS++ E P+FLFMKGTGWCG GADHYEPLIAN   +ISHEKVA+VL
Sbjct:   297 EENCVFFLPHKPRSEVLEVPVFLFMKGTGWCGGGADHYEPLIANPSPLISHEKVALVL 354


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      344       334   0.00091  116 3  11 22  0.41    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  246 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.70u 0.09s 26.79t   Elapsed:  00:00:03
  Total cpu time:  26.70u 0.09s 26.79t   Elapsed:  00:00:04
  Start:  Sat May 11 03:46:27 2013   End:  Sat May 11 03:46:31 2013

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	98.95

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=98.95  E-value=2.3e-09  Score=83.81  Aligned_cols=33  Identities=33%  Similarity=0.598  Sum_probs=29.9

Q ss_pred             CCCCchhHHHHHHhc----cCCCChHHHHHHHHHHHH
Q 019215           99 ADGNCLFTASQKAMT----ARDVDARELRRRTVRRFL  131 (344)
Q Consensus        99 ~dGnCLFtA~~~am~----~~~~~~relR~r~vrrF~  131 (344)
                      .||||||.|+..+|.    ....+..+||+++++...
T Consensus         2 gDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~   38 (121)
T PF02338_consen    2 GDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLR   38 (121)
T ss_dssp             SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            699999999999998    778899999999987766

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 32/222 (14%), Positives = 77/222 (34%), Gaps = 65/222 (29%)

Query: 33  DLV--DQSADVTASTTSIGVAAWEEVIGLEEQQRRHLERLHSKGVLWKHPEDQSRSIVFK 90
            L     SA +     S+    W +VI  +      + +LH   ++ K P++ + SI   
Sbjct: 377 RLSVFPPSAHIPTILLSL---IWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTISI--- 428

Query: 91  LSHGGEVSADGNCLFTASQKAMTARDVDARELRRR----TVRRFLED----------LGS 136
                 +          ++ A+    VD   + +      +     D          L +
Sbjct: 429 --PSIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 137 VGEGQREM-----------INDAIRHMYSPDLKNGWGIHVVQEVKL----LAKKE---DR 178
           +   +R             +   IRH  +    +G  ++ +Q++K     +   +   +R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 179 VGLDSAID---------------ELVQLGMQREMAAESIYKE 205
           + +++ +D               +L+++ +  E   E+I++E
Sbjct: 544 L-VNAILDFLPKIEENLICSKYTDLLRIALMAE--DEAIFEE 582

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	98.61
3pfy_A	185	OTU domain-containing protein 5; structural genomi	98.6
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	98.27
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	98.16
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	88.57
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	88.56
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	83.23

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=98.61  E-value=6.7e-08  Score=85.08  Aligned_cols=55  Identities=22%  Similarity=0.413  Sum_probs=42.5

Q ss_pred             cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215          255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA  329 (344)
Q Consensus       255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia  329 (344)
                      .|||.|-|-+||.-|+++|.|++..++       ....|=|..     ..+|++|.-.        +-||..|.-
T Consensus        85 ~WGg~iEL~Als~~~~~~I~V~~~~~~-------~~~~~~~~~-----~~~~I~L~Y~--------g~HYdsl~~  139 (212)
T 3by4_A           85 SWGGAIEIGIISDALAVAIYVVDIDAV-------KIEKFNEDK-----FDNYILILFN--------GIHYDSLTM  139 (212)
T ss_dssp             SCCCHHHHHHHHHHHTCEEEEEETTTT-------EEEEESTTT-----CSEEEEEEEC--------SSCEEEEEE
T ss_pred             EEccHHHHHHHHHHHCCCEEEEECCCC-------CeEEeCCCC-----CCCeEEEEEc--------CCcceEEec
Confidence            799999999999999999999998532       344553321     4678999874        279999865

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=98.60  E-value=2.8e-07  Score=80.46  Aligned_cols=53  Identities=21%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             HHHHHHH-hhcCccccCCCCCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 019215           64 RRHLERL-HSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLED  133 (344)
Q Consensus        64 r~~L~rl-~~~GV~wk~p~~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~  133 (344)
                      +..++.| ..+|..=+.                 |.+||||||.|+...|........+||+.++....++
T Consensus        47 ~~~~~~l~~~~gL~~~~-----------------I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n  100 (185)
T 3pfy_A           47 HWFEKALRDKKGFIIKQ-----------------MKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKN  100 (185)
T ss_dssp             HHHHHHHHHHHCCEEEC-----------------CCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCcEEEe-----------------eCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            3344445 677776554                 7899999999999999876777899999999877665

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=98.27  E-value=1.6e-06  Score=75.26  Aligned_cols=60  Identities=22%  Similarity=0.302  Sum_probs=41.2

Q ss_pred             cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215          255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA  329 (344)
Q Consensus       255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia  329 (344)
                      .||++|.|-+||..|+++|.|.|+.+...   -.+.+-|=|..     ...|++|...       |.-||++|-.
T Consensus       100 ~WGg~iEL~Als~~~~v~I~V~~~d~~~~---~~~i~~f~~~~-----~~~~I~L~Y~-------g~~HYdsl~~  159 (185)
T 3phx_A          100 EWGSTLEASMLAKEMGITIIIWTVAASDE---VEAGIKFGDGD-----VFTAVNLLHS-------GQTHFDALRI  159 (185)
T ss_dssp             CCCBHHHHHHHHHHHCCCEEEEEC--CCB---CCEEEEESSCC-----TTTSEEEEEE-------TTTEEEEEEE
T ss_pred             ccCcHHHHHHHHHHHCCcEEEEEecCCCC---ceEEEEcCCCC-----CCCEEEEEEC-------CCcCchhceE
Confidence            69999999999999999999998764321   01233343322     2678888873       4579999853

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=98.16  E-value=3.8e-06  Score=75.24  Aligned_cols=60  Identities=22%  Similarity=0.292  Sum_probs=42.1

Q ss_pred             cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215          255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA  329 (344)
Q Consensus       255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia  329 (344)
                      .||++|.|-+||.-|+++|.|.|+.+...   -.+.+-|=|..+     ..|++|.-.       |.-||++|-.
T Consensus       100 ~WGG~iEL~AlS~~~~v~I~V~~~d~~g~---~~~i~~fge~~~-----~~~I~L~Y~-------g~~HYdSL~~  159 (219)
T 3phu_A          100 EWGSTLEASMLAKEMGITIIIWTVAASDE---VEAGIKFGDGDV-----FTAVNLLHS-------GQTHFDALRI  159 (219)
T ss_dssp             CCCCHHHHHHHHHHTTCCEEEEEESSSSB---EEEEEEESSCCT-----TTSEEEEEE-------TTTEEEEEEE
T ss_pred             ccCCHHHHHHHHHHhCCCEEEEEecCCCC---ceeEEEecCCCC-----CCeEEEEEC-------CCcCchhheE
Confidence            69999999999999999999998874411   011233333322     578888763       4579999854

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=88.57  E-value=0.65  Score=41.16  Aligned_cols=59  Identities=29%  Similarity=0.443  Sum_probs=41.9

Q ss_pred             ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCccccc
Q 019215          254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLI  328 (344)
Q Consensus       254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPli  328 (344)
                      ..|||.|.|-+||..++..|-|+|+.|+.+-  +-+.-.| |..     ..|++.|+-+.      |  ||.-|.
T Consensus       175 ~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~--~v~~~~f-~~~-----~~p~I~LlY~p------g--HYdiLy  233 (234)
T 2zfy_A          175 CKESDHIHIIALAQALSVSIQVEYMDRGEGG--TTNPHIF-PEG-----SEPKVYLLYRP------G--HYDILY  233 (234)
T ss_dssp             TCCCCHHHHHHHHHHHTCCEEEEECC-CCSS--CCEEEEE-STT-----CCCSEEEEEET------T--EEEEEE
T ss_pred             hhcCCHHHHHHHHHHhCCCEEEEEcCCCCCC--cccceeC-CCC-----CCCeEEEEECC------C--CcccCC
Confidence            3799999999999999999999999988531  1122223 331     35789998884      3  998764

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=88.56  E-value=0.39  Score=42.78  Aligned_cols=59  Identities=29%  Similarity=0.423  Sum_probs=40.4

Q ss_pred             ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215          254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA  329 (344)
Q Consensus       254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia  329 (344)
                      ..|||.|.|-+||..++-.|-|+|+.|+.   ++-+.--| |.     -..|.++|+-++      |  ||.-|.-
T Consensus       172 ~~~~~~iei~ALa~aL~v~I~V~~~d~~~---~~~~~~~~-~~-----~~~~~I~LlY~p------g--HYdily~  230 (234)
T 1tff_A          172 ATECDHIQITALSQALSIALQVEYVDEMD---TALNHHVF-PE-----AATPSVYLLYKT------S--HYNILYA  230 (234)
T ss_dssp             TCCCCHHHHHHHHHHHTCCEEEEECC----------CCCC-CC-----CSSCSEEEEEET------T--EEEEEEE
T ss_pred             hcccccHHHHHHHHHhCCCEEEEEcCCCC---CccccccC-CC-----CCCCeEEEEECC------C--Cceeccc
Confidence            47999999999999999999999998874   22222122 22     235779999883      2  9998764

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=83.23  E-value=1.8  Score=40.36  Aligned_cols=66  Identities=18%  Similarity=0.289  Sum_probs=48.0

Q ss_pred             ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEE-eecCCCCCCCCCCCEEEEeecccccCCCCCCccccccccc
Q 019215          254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVF-FLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANAC  332 (344)
Q Consensus       254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvF-FLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia~~~  332 (344)
                      +.|||.|.|-+||..++-.|-|++..++.+-  +-|... | |...  .-..|.++|+-|+ |       ||+.|...+.
T Consensus       210 ~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~--~v~~h~~f-p~~~--~~~~p~I~LLYrp-g-------HYDILY~~~p  276 (284)
T 4dhi_B          210 WKDADHLAINSLIKAAGTRVRIEYMDRTAAP--NGGWHYDI-PSDD--QQIAPEITLLYRP-G-------HYDVIYKKDS  276 (284)
T ss_dssp             TCCCCHHHHHHHHHHTTCCEEEEESSGGGCT--TSSSEEEE-SCCC--SCCCCSEEEEEET-T-------EEEEEEECC-
T ss_pred             hhcccHHHHHHHHHHhCCcEEEEEecCCCCC--CCcccccC-CCCC--CCCCCEEEEeecC-C-------CccccccCCC
Confidence            4799999999999999999999999987432  334433 5 6532  1133679999987 4       9998865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	90.81

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.13  Score=42.75  Aligned_cols=58  Identities=24%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215          255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA  329 (344)
Q Consensus       255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia  329 (344)
                      .|||.+.|.+||..|+..|-|++.....+.+         ++..-.+-..++++|+-++ |       ||..|.-
T Consensus       167 ~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~---------~~~~~~~~~~~~I~Lly~p-g-------HYdiLY~  224 (228)
T d1tffa_         167 TECDHIQITALSQALSIALQVEYVDEMDTAL---------NHHVFPEAATPSVYLLYKT-S-------HYNILYA  224 (228)
T ss_dssp             CCCCHHHHHHHHHHHTCCEEEEECC----------------CCCCCCCSSCSEEEEEET-T-------EEEEEEE
T ss_pred             ccCCcHHHHHHHHHhCCCEEEEEecCCCCcc---------ccccCCCCCCCEEEEEeCC-C-------CcccCcc
Confidence            7999999999999999999999886553322         3333345567899999864 2       9998853