Citrus Sinensis ID: 019236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MSTTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccEEEEEEccccccEEEcccccccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccEEEEEEcccccEEEcccccHHHHHHHcEEcEEEcccHHccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHccccccccHHccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHHcccEEcccccccccccccccHHHHHHHccccccEccEEcccccEEEEccccHHHHHHHHHHHHEEcccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
msttplehdyiglsesssvprssdklsysssssscteenytssnkacLNFKetelrlglpgsqspgrkpshglslfgkdiennnsnsnntngyaapsplkslvsgakrgfsdaldgasrnwglsingkpdaelgkgavlysprgglddkckivkevdvlplspkpvqekknqvpalneneptsapaakaqvvgwppirsfrkntmasnlvknndaaegksgsgcLYVKVsmdgapylrkVDLKIYSNYMELSSALEKMFscftigqcdshglpgqdglsesrlmdllhGSEYvltyedkdgdwmlvgdvpwdmFTETCRRLRIMKgseaiglapramekcknrt
Flexible Loop (DISEMBL)
msttplehdyiglsesssvprssdKLSYsssssscteenytssnKACLNFKETELRLglpgsqspgrkPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLsingkpdaelgKGAVLYSPRGGLDDKCKIVKEVdvlplspkpvqekknqvpalneneptsapaakaqvvgWPPIRSFRKNTMASNLVknndaaegksgsGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKgseaiglapramekcknrt
Low Complexity Region (SEG)
MSTTPLEHDYIGLSESSSVPRSSDKLsysssssscteenytssnKACLNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIEnnnsnsnntnGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT
Disordered region (IsUnstruct)
************************************************************************************************************************WGLSIN*****ELGKGAVLYSPRGGLDDKCKIVKEVDVL********************************VGWPPI************************SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIG*************
Disordered Region (DISOPRED)
****PLE*DYIGL****************************************ELRLGLPG*********************************************************************************************************************************************************************VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQC***********************EYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIM********************
Disordered Region (DISEMBL)
********DYIGL******************************NKACLNFKETELRLGLP**********HGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA********
Disordered Region (DISPRO)
*****L****************************************CLNFKETELRLGLPG********************NNNSNSNNT*G********************************************************************************************PAAKAQVVGWPPIRSFRKNTMASN*************SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDS**L**QDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAME******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q9ZSY8	305	Auxin-responsive protein	yes	no	0.840	0.947	0.515	8e-81
Q38826	321	Auxin-responsive protein	no	no	0.840	0.900	0.508	3e-80
Q38827	338	Auxin-responsive protein	no	no	0.880	0.896	0.483	3e-71
P0C132	277	Auxin-responsive protein	yes	no	0.470	0.584	0.672	1e-61
O24407	236	Auxin-responsive protein	no	no	0.642	0.936	0.443	8e-59
Q38832	228	Auxin-responsive protein	no	no	0.662	1.0	0.454	5e-57
P13089	243	Auxin-induced protein AUX	no	no	0.697	0.987	0.443	2e-55
Q38825	243	Auxin-responsive protein	no	no	0.659	0.934	0.448	4e-55
Q75GB1	257	Auxin-responsive protein	no	no	0.404	0.540	0.694	2e-54
Q6AT33	281	Auxin-responsive protein	no	no	0.392	0.480	0.633	7e-54

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  300 bits (769), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 178/345 (51%), Positives = 218/345 (63%), Gaps = 56/345 (16%)

Query: 7   EHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSPG 66
           EHDYIGLSE  ++            +++ +++  T  N   LNFK TELRLGLPGS+SP 
Sbjct: 8   EHDYIGLSEFPTM-----------EATTMSDKTKTRDNNNGLNFKATELRLGLPGSESPE 56

Query: 67  RKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSIN 126
           R  S  L+L               N  + P      VSGAKR FSDA++ +++ W  S  
Sbjct: 57  RVDSRFLAL---------------NKSSCP------VSGAKRVFSDAINDSNK-WVFS-- 92

Query: 127 GKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPA 186
             P +    G V      G   +  +VK+        K     K  VP   +    +APA
Sbjct: 93  --PGSTTATGDV----GSGSGPRTSVVKD-------GKSTTFTKPAVPVKEKKSSATAPA 139

Query: 187 AKAQVVGWPPIRSFRKNTMASNLVK---NN---DAAEGKSG--SGCLYVKVSMDGAPYLR 238
           +KAQVVGWPPIRSFRKN+MAS+  +   NN   + AE KSG    CLYVKVSM+GAPYLR
Sbjct: 140 SKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLR 199

Query: 239 KVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYED 298
           K+DLK Y +Y+ELSSALEKMFSCFTIGQ  SHG  G+DGL+ESRL DLL GSEYV+TYED
Sbjct: 200 KIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYED 259

Query: 299 KDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           KD DWMLVGDVPW+MF  +C++LRIMK SEAIGLAPR MEKC++R
Sbjct: 260 KDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  298 bits (764), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/346 (50%), Positives = 223/346 (64%), Gaps = 57/346 (16%)

Query: 7   EHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSPG 66
           E +Y+GLS+ SSV              S T  N     K+ LNFK TELRLGLP SQSP 
Sbjct: 21  ERNYLGLSDCSSV-------------DSSTIPNVV--GKSNLNFKATELRLGLPESQSPE 65

Query: 67  RKPSHGLS---------LFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGA 117
           R+   GL          LF   +  +  N + T G+      K++VSG KRGF+D  D  
Sbjct: 66  RETDFGLLSPRTPDEKLLF--PLLPSKDNGSATTGH------KNVVSGNKRGFADTWDEF 117

Query: 118 SRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALN 177
           S   G+  + +P   +    ++ SP+         VK+V       K +QE+++      
Sbjct: 118 S---GVKGSVRPGGGIN---MMLSPK---------VKDVS------KSIQEERSHAKGGL 156

Query: 178 ENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYL 237
            N    APAAKAQVVGWPPIRS+RKNTMAS+  KN D  +GK G G L+VKVSMDGAPYL
Sbjct: 157 NN----APAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYL 212

Query: 238 RKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYE 297
           RKVDL+ Y++Y +LSSALEKMFSCFT+GQC  HG  G++ +SE +L DLLHGSE+VLTYE
Sbjct: 213 RKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYE 272

Query: 298 DKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           DKDGDWMLVGDVPW++FTETC++L+IMKGS++IGLAP A+EK KN+
Sbjct: 273 DKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  269 bits (687), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 164/339 (48%), Positives = 212/339 (62%), Gaps = 36/339 (10%)

Query: 7   EHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSPG 66
           EH+Y+GLS+ SSV         SS+ S   E++     KA ++ K TEL LGLPGSQSP 
Sbjct: 33  EHNYLGLSDCSSVG--------SSTLSPLAEDD-----KATISLKATELTLGLPGSQSPA 79

Query: 67  RKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSIN 126
           R     L    K  E        +      S  K+  SG KRGFSD +D  +        
Sbjct: 80  RDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAE------- 132

Query: 127 GKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPA 186
                   K +V Y+ +  +  +    + V     + K V +   +  +   N  +S PA
Sbjct: 133 -------AKSSV-YTEKNWMFPEAAATQSV-----TKKDVPQNIPKGQSSTTNNSSSPPA 179

Query: 187 AKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYS 246
           AKAQ+VGWPP+RS+RKNT+A+   KN+D  +G+ GSG L+VKVSMDGAPYLRKVDL+ Y+
Sbjct: 180 AKAQIVGWPPVRSYRKNTLATT-CKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYT 238

Query: 247 NYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306
           NY ELSSALEKMF+ FT+GQC S+G  G+D LSE++L DLL+G +YVLTYEDKDGDWMLV
Sbjct: 239 NYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLV 298

Query: 307 GDVPWDMFTETCRRLRIMKGSEAIGL--APRAMEKCKNR 343
           GDVPW+MF + C++L+IMKG +AIGL  APRAMEK K R
Sbjct: 299 GDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 135/171 (78%), Gaps = 9/171 (5%)

Query: 180 EPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCL------YVKVSMDG 233
           +P    A KAQVVGWPP+RS+RKN +A    K  DAA+G             +VKVSMDG
Sbjct: 110 DPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDG 169

Query: 234 APYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYV 293
           APYLRKVDLK+Y +Y+ELS ALEKMFS FTIG C SHG+   +G++ES++ DLL+GSEYV
Sbjct: 170 APYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV---NGMNESKIADLLNGSEYV 226

Query: 294 LTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 344
            TYEDKDGDWMLVGDVPW+MF E+C+RLRIMKGSEAIGLAPRAMEKCKNR+
Sbjct: 227 PTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  227 bits (579), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 138/311 (44%), Positives = 170/311 (54%), Gaps = 90/311 (28%)

Query: 48  LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAK 107
           +NF+ TELRLGLPG        +HG  + GK+           NG              K
Sbjct: 2   INFEATELRLGLPGG-------NHGGEMAGKN-----------NG--------------K 29

Query: 108 RGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQ 167
           RGFS+ +D       L +N    A              +D   K+  E            
Sbjct: 30  RGFSETVD-------LKLNLSSTA--------------MDSVSKVDLE------------ 56

Query: 168 EKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSG------ 221
                    N  E    P AKAQVVGWPP+RSFRKN M+       DA EG         
Sbjct: 57  ---------NMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSG 107

Query: 222 --------SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLP 273
                   +   YVKVSMDGAPYLRK+DLK+Y  Y +LS+AL KMFS FTIG     G+ 
Sbjct: 108 ATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM- 166

Query: 274 GQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLA 333
            +D ++ES+L+DLL+GS+YV TYEDKDGDWMLVGDVPW+MF ++C+R+RIMKGSEAIGLA
Sbjct: 167 -KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLA 225

Query: 334 PRAMEKCKNRT 344
           PRA+EKCKNR+
Sbjct: 226 PRALEKCKNRS 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  221 bits (564), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 135/297 (45%), Positives = 168/297 (56%), Gaps = 69/297 (23%)

Query: 48  LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAK 107
           +N KETEL LGLPG                                   SP KS V G K
Sbjct: 1   MNLKETELCLGLPGGTE-----------------------------TVESPAKSGV-GNK 30

Query: 108 RGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQ 167
           RGFS+ +D       L +N + + +   G V  +  G   +K  +               
Sbjct: 31  RGFSETVD-------LKLNLQSNKQ---GHVDLNTNGAPKEKTFL--------------- 65

Query: 168 EKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYV 227
                       +P S P AKAQVVGWPP+R++RKN MA+      + A    G    +V
Sbjct: 66  -----------KDP-SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFV 113

Query: 228 KVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL 287
           KVSMDGAPYLRKVDLK+Y++Y +LS AL KMFS FT+G   + G+   D ++ES++MDLL
Sbjct: 114 KVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGM--IDFMNESKVMDLL 171

Query: 288 HGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 344
           + SEYV +YEDKDGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRAMEK KNR+
Sbjct: 172 NSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/300 (44%), Positives = 167/300 (55%), Gaps = 60/300 (20%)

Query: 48  LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAK 107
           + F+ETELRLGLPG                             NG      ++      K
Sbjct: 1   MGFEETELRLGLPG-----------------------------NGGTEEVLIR------K 25

Query: 108 RGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIV-KEVDVLPLSPKPV 166
           RGFS+   G       +++   +    + A   +      DK K + KE  +LP  P   
Sbjct: 26  RGFSETETGHEDESATTVDLMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPADP--- 82

Query: 167 QEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLY 226
                           + P AK QVVGWPP+RSFRKN +A       + +E  S     +
Sbjct: 83  ----------------AKPPAKTQVVGWPPVRSFRKNMLAVQ-KSVGEESEKNSSPNASF 125

Query: 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDL 286
           VKVSMDGAPYLRKVDLK+Y +Y ELS +L KMFS FT G C+S G+  +D ++ES+L DL
Sbjct: 126 VKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDL 183

Query: 287 LHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAI--GLAPRAMEKCKNRT 344
           L+ S+YV TYEDKDGDWMLVGDVPW+MF E+C+RLRIMKG EAI  GLAPRAM KCKNR+
Sbjct: 184 LNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  215 bits (548), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/308 (44%), Positives = 172/308 (55%), Gaps = 81/308 (26%)

Query: 48  LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAK 107
           +N K TEL LGLPG                                A  SP KS V G+K
Sbjct: 6   MNLKATELCLGLPGGAE-----------------------------AVESPAKSAV-GSK 35

Query: 108 RGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQ 167
           RGFS+ +D       L +N + + E           G +D     +K V  +P     ++
Sbjct: 36  RGFSETVD-------LMLNLQSNKE-----------GSVD-----LKNVSAVPKEKTTLK 72

Query: 168 EKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGS----- 222
           +              S P AKAQVVGWPP+R++RKN M     K +  AE  S       
Sbjct: 73  D-------------PSKPPAKAQVVGWPPVRNYRKNMMTQQ--KTSSGAEEASSEKAGNF 117

Query: 223 -----GCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDG 277
                G   VKVSMDGAPYLRKVDLK+Y +Y +LS AL KMFS FT+G   + G+   D 
Sbjct: 118 GGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DF 175

Query: 278 LSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAM 337
           ++ES+LM+LL+ SEYV +YEDKDGDWMLVGDVPW+MF E+C+RLRIMKGSEA+GLAPRAM
Sbjct: 176 MNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAM 235

Query: 338 EK-CKNRT 344
           EK CKNR+
Sbjct: 236 EKYCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GB1|IAA17_ORYSJ Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 121/154 (78%), Gaps = 15/154 (9%)

Query: 191 VVGWPPIRSFRKNTMASNLVKNN-DAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYM 249
           VVGWPPIRS+RKNTMA+N +K++ + AE K G G LYVKVSMDGAPYLRKVDLK Y NY 
Sbjct: 117 VVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYK 176

Query: 250 ELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDV 309
           +LS+ALEKMF  FT G+         DGLSESR        EYVLTYEDKDGDWMLVGDV
Sbjct: 177 DLSTALEKMFIGFTTGK---------DGLSESR-----KDGEYVLTYEDKDGDWMLVGDV 222

Query: 310 PWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           PW+MF  +CRRLRIMKGS+AIGLAPRA++K KNR
Sbjct: 223 PWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNR 256

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6AT33|IAA19_ORYSJ Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1

 Score =  211 bits (537), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 95/150 (63%), Positives = 117/150 (78%)

Query: 190 QVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYM 249
           QVVGWPP+RS+RKNT+A++  K     +GKS  GC YVKVSMDGAPYLRKVDLK YS+Y 
Sbjct: 127 QVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYE 186

Query: 250 ELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDV 309
           +LS ALEKMFSCF  G+  SH    +D L++    D L   EYVLTYEDKD DWMLVGD+
Sbjct: 187 DLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDL 246

Query: 310 PWDMFTETCRRLRIMKGSEAIGLAPRAMEK 339
           PWD+FT +CR+LRIM+GS+A G+APR++E+
Sbjct: 247 PWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
255549904	373	Auxin-responsive protein IAA27, putative	0.991	0.914	0.676	1e-127
225442559	343	PREDICTED: auxin-responsive protein IAA2	0.944	0.947	0.694	1e-126
337729993	332	auxin-responsive protein [Gossypium hirs	0.933	0.966	0.705	1e-124
224070929	349	predicted protein [Populus trichocarpa]	0.973	0.959	0.699	1e-123
359482910	334	PREDICTED: auxin-responsive protein IAA2	0.918	0.946	0.672	1e-118
358249222	319	uncharacterized protein LOC100804423 [Gl	0.866	0.934	0.646	1e-113
449448004	356	PREDICTED: auxin-responsive protein IAA8	0.956	0.924	0.627	1e-109
297743239	292	unnamed protein product [Vitis vinifera]	0.843	0.993	0.648	1e-109
224054380	335	predicted protein [Populus trichocarpa]	0.921	0.946	0.622	1e-105
356550522	307	PREDICTED: auxin-responsive protein IAA2	0.848	0.951	0.623	1e-105

>gi|255549904|ref|XP_002516003.1| Auxin-responsive protein IAA27, putative [Ricinus communis] gi|223544908|gb|EEF46423.1| Auxin-responsive protein IAA27, putative [Ricinus communis]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/374 (67%), Positives = 284/374 (75%), Gaps = 33/374 (8%)

Query: 1   MSTTPLEHDYIGLSESSSVPRSSDKLSYSSSSSS-------CTEENYTSSNKACLNFKET 53
           MS+ P EHDYIGLSE+S + R SDKLS S S SS        T E  ++ NK CLN KET
Sbjct: 1   MSSVPKEHDYIGLSETSPMERISDKLSSSPSFSSSSSSSSSTTNEENSNKNKTCLNLKET 60

Query: 54  ELRLGLPGSQSPGRKP---SHGLSLFGKDIENNNSNSNNTN----GYAAPSPLKSLVSGA 106
           ELRLGLPGSQSP RKP     G+SLFGKDI+  N+N++ TN     ++  SPLKSLVSGA
Sbjct: 61  ELRLGLPGSQSPERKPLSLHTGVSLFGKDIDTTNNNNSATNGNGYSFSLSSPLKSLVSGA 120

Query: 107 KRGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRG-----------------GLDDK 149
           KRGFSDA+DG++ NW   +N   D +L KGAVL+S RG                 GL  K
Sbjct: 121 KRGFSDAIDGSTTNWVFPVNNGSDIDLSKGAVLFSSRGDNGNKNNNNTQKSSIPAGLAKK 180

Query: 150 CKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNL 209
             +V   +++  SPKPV EK +QV +   NE  SAPAAKAQVVGWPPIRSFRKNTMASN+
Sbjct: 181 -DVVVAGNIIAQSPKPVSEKNSQVSS-GANENGSAPAAKAQVVGWPPIRSFRKNTMASNV 238

Query: 210 VKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDS 269
            KNN+ AEGKSGSGCLYVKVSMDGAPYLRKVDLK YSNY+ELSS LEKMFSCFTIGQC S
Sbjct: 239 AKNNEDAEGKSGSGCLYVKVSMDGAPYLRKVDLKTYSNYVELSSGLEKMFSCFTIGQCGS 298

Query: 270 HGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEA 329
           HGLPG+DGLSE+ L DLLHGSEYVLTYEDKD DWMLVGDVPW+MFTETCRRLRIMKGSEA
Sbjct: 299 HGLPGRDGLSETCLKDLLHGSEYVLTYEDKDSDWMLVGDVPWEMFTETCRRLRIMKGSEA 358

Query: 330 IGLAPRAMEKCKNR 343
           IGLAPRAMEKCK+R
Sbjct: 359 IGLAPRAMEKCKSR 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442559|ref|XP_002284282.1| PREDICTED: auxin-responsive protein IAA27-like isoform 1 [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/357 (69%), Positives = 283/357 (79%), Gaps = 32/357 (8%)

Query: 3   TTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGS 62
           + PLEHDYIGLSE+ S+ R+SDK+S +SSS+  +E   +++    LN +ETELRLGLPGS
Sbjct: 2   SIPLEHDYIGLSEAPSMERASDKISSASSSTISSESEKSTA----LNLRETELRLGLPGS 57

Query: 63  QSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWG 122
           +SP RKP  G+SLFGKD+E+       TNGY+  S LK  VSGAKRGFSDA+DG+ + W 
Sbjct: 58  ESPERKPQLGVSLFGKDLEDK------TNGYSLGS-LKGFVSGAKRGFSDAIDGSGK-WV 109

Query: 123 LSINGKPDAELGKGAVLYSPRGG--------LDDKCK--------IVKEVDVLPLSPKPV 166
            S+NG  + +LGKGAVL+SPRGG        LD+            +K+V   P SPKPV
Sbjct: 110 FSVNGGSEVDLGKGAVLFSPRGGNGVKPLGGLDNNSAQKSCMPGPAMKDV-AAPSSPKPV 168

Query: 167 QEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLY 226
           QEKK Q  A NE+   SAPAAKAQVVGWPPIRSFRKNTMAS+  KNN+ AEGKSG GCLY
Sbjct: 169 QEKKPQASAANEH--ASAPAAKAQVVGWPPIRSFRKNTMASS-AKNNEDAEGKSGLGCLY 225

Query: 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDL 286
           VKVSMDGAPYLRKVDLKIY NYMELSSALEKMFSCFTIGQC SHGLPG+DGL+ES LMDL
Sbjct: 226 VKVSMDGAPYLRKVDLKIYCNYMELSSALEKMFSCFTIGQCGSHGLPGRDGLTESHLMDL 285

Query: 287 LHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           LHGSEYVLTYEDKDGDWMLVGDVPW+MFTE+C+RLRIMKGSEAIGLAPRAMEKCKNR
Sbjct: 286 LHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKGSEAIGLAPRAMEKCKNR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337729993|gb|AEI70506.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/350 (70%), Positives = 282/350 (80%), Gaps = 29/350 (8%)

Query: 3   TTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGS 62
           +TPLEHDYIGL+ +SS+ RSS+K+S SSSSS  +     ++N   LN KETELRLGLPGS
Sbjct: 2   STPLEHDYIGLAATSSMERSSEKISSSSSSSIPSNIEDKTTNNPSLNLKETELRLGLPGS 61

Query: 63  QSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWG 122
           +SP RK    LSLFGKD+E N+     +NG+   SPLK+LVSGAKRGFSDA+DG++ NW 
Sbjct: 62  ESPERK----LSLFGKDLETNDK----SNGFVG-SPLKNLVSGAKRGFSDAIDGSNGNWV 112

Query: 123 LSINGKPDAELGKGAVLYSPRGGLDDKCK---------IVKEVDVLPLSPKPVQEKKNQV 173
            +INGK D ELGKGAVL SPRGGLD+K           ++KEV  +P SPKPVQ+KKN V
Sbjct: 113 FAINGKSDVELGKGAVLASPRGGLDNKTNPQQVRTSVPVMKEVVGVPQSPKPVQDKKNLV 172

Query: 174 PALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDG 233
           P +NE+   SAPAAKAQVVGWPPIRSFRKN+MASNL KN+D A     +GCLYVKVSMDG
Sbjct: 173 PPVNEH--ASAPAAKAQVVGWPPIRSFRKNSMASNLAKNSDEA-----AGCLYVKVSMDG 225

Query: 234 APYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYV 293
           APYLRKVDLK Y+NY E SSALEKMFSCFTIGQC S+G    DGLSESRLMDLLHGSEYV
Sbjct: 226 APYLRKVDLKTYNNYREFSSALEKMFSCFTIGQCGSNG----DGLSESRLMDLLHGSEYV 281

Query: 294 LTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           LTYEDKDGDWMLVGDVPW+MFT++CRRLRIMKGSEAIGLAPRAMEKCKN+
Sbjct: 282 LTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKCKNQ 331

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070929|ref|XP_002303297.1| predicted protein [Populus trichocarpa] gi|222840729|gb|EEE78276.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/356 (69%), Positives = 280/356 (78%), Gaps = 21/356 (5%)

Query: 1   MSTTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEE------NYTSSNKACLNFKETE 54
           MS+ P EHDYIGLSE+ S+ + SDKLS SSS+ S  E       + ++S    LN KETE
Sbjct: 1   MSSIPKEHDYIGLSETPSMEKISDKLSSSSSTLSTEENINSNSNSNSNSTNTSLNLKETE 60

Query: 55  LRLGLPGSQSPGRK---PSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFS 111
           LRLGLPG QSP RK   P+ G+SLFGKDI+     +NNTNGY    PLK+LVSG KRGFS
Sbjct: 61  LRLGLPGYQSPERKLTLPAAGVSLFGKDID-----TNNTNGYPL-RPLKNLVSGTKRGFS 114

Query: 112 DALDGASRNWGLSINGKPDAELGKGAVLYSPRG--GLDDKCKIV--KEVDVLPLSPKPVQ 167
           DA+ G+S  W  S +   + +LGKGA+L+SPRG  G   K  +    + D +  SPKPVQ
Sbjct: 115 DAIVGSSGKWVFSGSNGSEVDLGKGAILFSPRGDNGNSQKSCVAGPAKKDDVAQSPKPVQ 174

Query: 168 EKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYV 227
           EK +QV A NEN  +SAPAAKAQVVGWPPIRSFRKNTMAS+LVKNN+  EGKSG GCLYV
Sbjct: 175 EKISQVAAANEN--SSAPAAKAQVVGWPPIRSFRKNTMASSLVKNNEDVEGKSGYGCLYV 232

Query: 228 KVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL 287
           KVSMDGAPYLRKVDLK YSNY+ELSSALEKMFSCFTIGQC SHGL GQDGL+ESRL D+L
Sbjct: 233 KVSMDGAPYLRKVDLKTYSNYLELSSALEKMFSCFTIGQCGSHGLRGQDGLTESRLKDIL 292

Query: 288 HGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           HGSEYVLTYEDKDGDWMLVGDVPWDMFT +CRRLRIMKGSEAIGLAPRAMEKCKNR
Sbjct: 293 HGSEYVLTYEDKDGDWMLVGDVPWDMFTNSCRRLRIMKGSEAIGLAPRAMEKCKNR 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482910|ref|XP_003632858.1| PREDICTED: auxin-responsive protein IAA27-like isoform 2 [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/357 (67%), Positives = 275/357 (77%), Gaps = 41/357 (11%)

Query: 3   TTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGS 62
           + PLEHDYIGLSE+ S+ R+SDK+S +SSS+  +E   +++    LN +ETELRLGLPGS
Sbjct: 2   SIPLEHDYIGLSEAPSMERASDKISSASSSTISSESEKSTA----LNLRETELRLGLPGS 57

Query: 63  QSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWG 122
           +SP RKP  G+SLFGKD+E+       TNGY+  S LK  VSGAKRGFSDA+DG+ + W 
Sbjct: 58  ESPERKPQLGVSLFGKDLEDK------TNGYSLGS-LKGFVSGAKRGFSDAIDGSGK-WV 109

Query: 123 LSINGKPDAELGKGAVLYSPRGG--------LDDKCK--------IVKEVDVLPLSPKPV 166
            S+NG  + +LGKGAVL+SPRGG        LD+            +K+V   P SPKPV
Sbjct: 110 FSVNGGSEVDLGKGAVLFSPRGGNGVKPLGGLDNNSAQKSCMPGPAMKDV-AAPSSPKPV 168

Query: 167 QEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLY 226
           QEKK Q  A NE+   SAPAAKAQVVGWPPIRSFRKNTMAS+  KNN+ AEGKSG GCLY
Sbjct: 169 QEKKPQASAANEH--ASAPAAKAQVVGWPPIRSFRKNTMASS-AKNNEDAEGKSGLGCLY 225

Query: 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDL 286
           VKVSMDGAPYLRKVDLKIY NYMELSSALEKMFSCFTIG+         DGL+ES LMDL
Sbjct: 226 VKVSMDGAPYLRKVDLKIYCNYMELSSALEKMFSCFTIGR---------DGLTESHLMDL 276

Query: 287 LHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           LHGSEYVLTYEDKDGDWMLVGDVPW+MFTE+C+RLRIMKGSEAIGLAPRAMEKCKNR
Sbjct: 277 LHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKGSEAIGLAPRAMEKCKNR 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249222|ref|NP_001240013.1| uncharacterized protein LOC100804423 [Glycine max] gi|255636791|gb|ACU18729.1| unknown [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/354 (64%), Positives = 257/354 (72%), Gaps = 56/354 (15%)

Query: 6   LEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSP 65
           LEHDYIGL+E+ S+  SSDKLS        +E+  TSS    LN KETELRLGLPG +SP
Sbjct: 5   LEHDYIGLAENPSMDGSSDKLS--------SEDGKTSS----LNLKETELRLGLPGCESP 52

Query: 66  GRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSI 125
            RK    L LFGK+++NNN      N  +  SPLK+   GAKRGFSD  +G+        
Sbjct: 53  ERKSGSALCLFGKELQNNN------NVCSVVSPLKA---GAKRGFSDVTEGS-------- 95

Query: 126 NGKPDAELGKGAVLYSPRG--------GLDDKCKI-------VKEVD-VLPLSPKPVQEK 169
                    +GA L+SPRG        GLD +          +KEV  VLP S KPVQEK
Sbjct: 96  ---------QGAALFSPRGANVGKPIIGLDTQTNTQQQANTTIKEVGAVLPQSTKPVQEK 146

Query: 170 KNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKV 229
            +QV A N +   SAPAAKAQVVGWPPIRSFRKNTMASNL KNND  EGKSG GCLYVKV
Sbjct: 147 NDQVAATNGH--ASAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDDDEGKSGFGCLYVKV 204

Query: 230 SMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHG 289
           SMDGAPYLRKVDLK Y+NYMELSSALEKMFSCFTIGQC+S GLPG+DGLSES L DLLHG
Sbjct: 205 SMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHG 264

Query: 290 SEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           SEYVLTYEDKDGDWMLVGDVPW+MFT++CRRLRIMKGSEAIGLAPRAMEK +++
Sbjct: 265 SEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQ 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448004|ref|XP_004141756.1| PREDICTED: auxin-responsive protein IAA8-like [Cucumis sativus] gi|449491758|ref|XP_004158995.1| PREDICTED: auxin-responsive protein IAA8-like [Cucumis sativus]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/362 (62%), Positives = 263/362 (72%), Gaps = 33/362 (9%)

Query: 5   PLEHDYIGLSESSSVPRSSDK--LSYSSSSSSCTEENYTSSNKAC--LNFKETELRLGLP 60
           PLEH+YIGL+E+SS+ RS +K   S SSS SS +  + T+  K C  ++FK+TELRLGLP
Sbjct: 4   PLEHNYIGLTEASSMERSPEKNPSSSSSSDSSDSCSHVTNEEKKCATVSFKDTELRLGLP 63

Query: 61  GSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPL--KSLVSGAKRGFSDALDGAS 118
           GSQSP RK    +S FG D E+  SN     G+++P PL  K+LVSG+KRGFSDA+DG+S
Sbjct: 64  GSQSPERKSGSEISFFGNDFEDKQSN-----GFSSPCPLNLKNLVSGSKRGFSDAIDGSS 118

Query: 119 RNWGLSINGKPDAELGKGAVLYSPR------GGLDDKC---------KIVKEVDVLPLSP 163
             W  S +   + +LG+GAVL+SP+      GGL             K VKEV  +P S 
Sbjct: 119 AKWVFSGSNGSEVKLGEGAVLFSPKSGKPTIGGLGSNVNTPQSCVTLKAVKEVLPVPQSS 178

Query: 164 KPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMAS-NLVKNNDAAEGKSGS 222
             VQEKK QV     +E   AP AKAQVVGWPPIRSFRKNTM + N  KN D  EGKSGS
Sbjct: 179 NSVQEKKPQV-----SENGGAPLAKAQVVGWPPIRSFRKNTMTTTNSTKNTDEGEGKSGS 233

Query: 223 -GCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSES 281
            GCLYVKVSM+GAPYLRKVDLK+YSNY ELS ALEKMFSCFTIGQC + GLP ++ LSES
Sbjct: 234 SGCLYVKVSMEGAPYLRKVDLKLYSNYSELSLALEKMFSCFTIGQCGTEGLPTKERLSES 293

Query: 282 RLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCK 341
              D LHGSEYVLT EDKDGDWMLVGDVPW+MFTE+CRRLRIMKGSEAIGLAPRA EKCK
Sbjct: 294 NSKDFLHGSEYVLTCEDKDGDWMLVGDVPWEMFTESCRRLRIMKGSEAIGLAPRATEKCK 353

Query: 342 NR 343
           NR
Sbjct: 354 NR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743239|emb|CBI36106.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/341 (64%), Positives = 249/341 (73%), Gaps = 51/341 (14%)

Query: 3   TTPLEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGS 62
           + PLEHDYIGLSE+ S+ R+SDK+S +SSS+  +E   +++    LN +ETELRLGLPGS
Sbjct: 2   SIPLEHDYIGLSEAPSMERASDKISSASSSTISSESEKSTA----LNLRETELRLGLPGS 57

Query: 63  QSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWG 122
           +SP RKP  G                              VSGAKRGFSDA+DG+ + W 
Sbjct: 58  ESPERKPQLG----------------------------GFVSGAKRGFSDAIDGSGK-WV 88

Query: 123 LSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPT 182
            S+NG  +     G  +              K+V   P SPKPVQEKK Q  A NE+   
Sbjct: 89  FSVNGGSEKSCMPGPAM--------------KDV-AAPSSPKPVQEKKPQASAANEH--A 131

Query: 183 SAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDL 242
           SAPAAKAQVVGWPPIRSFRKNTMAS+  KNN+ AEGKSG GCLYVKVSMDGAPYLRKVDL
Sbjct: 132 SAPAAKAQVVGWPPIRSFRKNTMASS-AKNNEDAEGKSGLGCLYVKVSMDGAPYLRKVDL 190

Query: 243 KIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGD 302
           KIY NYMELSSALEKMFSCFTIGQC SHGLPG+DGL+ES LMDLLHGSEYVLTYEDKDGD
Sbjct: 191 KIYCNYMELSSALEKMFSCFTIGQCGSHGLPGRDGLTESHLMDLLHGSEYVLTYEDKDGD 250

Query: 303 WMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           WMLVGDVPW+MFTE+C+RLRIMKGSEAIGLAPRAMEKCKNR
Sbjct: 251 WMLVGDVPWEMFTESCKRLRIMKGSEAIGLAPRAMEKCKNR 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054380|ref|XP_002298231.1| predicted protein [Populus trichocarpa] gi|222845489|gb|EEE83036.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/360 (62%), Positives = 253/360 (70%), Gaps = 43/360 (11%)

Query: 1   MSTTPLEHDYIGLSESSSVPR------------SSDKLSYSSSSSSCTEENYTSSNKACL 48
           M + P EHDYIGLSE+ S+              S+      ++SSS    N   +N   L
Sbjct: 1   MYSIPKEHDYIGLSETPSMENISEKLSSSSTSSSTLSTEEKNNSSSSNSNNNNKNNNTSL 60

Query: 49  NFKETELRLGLPGSQSPGRKPS---HGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSG 105
           N KETELRLGLPGSQSP RKP+    G+SL GKDI+     +NNTN Y+   P+K+LVSG
Sbjct: 61  NMKETELRLGLPGSQSPERKPTVPAAGVSLVGKDID-----TNNTNAYSL-IPVKNLVSG 114

Query: 106 AKRGFSDALDGASRNWGLS--INGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSP 163
           AKR FSDA+DG++  W  S   NG P      G                  + DV   SP
Sbjct: 115 AKRVFSDAIDGSTGKWVFSGGDNGNPQKSRVAGPA----------------KKDVAQ-SP 157

Query: 164 KPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSG 223
           KPVQEK +QV A NEN  +SAPAAK QVVGWPPIRSFRKNTMAS+L KNN+  +GKSG G
Sbjct: 158 KPVQEKNSQVAAANEN--SSAPAAKTQVVGWPPIRSFRKNTMASSLAKNNEDVDGKSGYG 215

Query: 224 CLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRL 283
            LYVKVSMDGAPYLRKVDLK Y NY+ELSSALEKMF CFTIGQC SHGL  +DGL+ES L
Sbjct: 216 YLYVKVSMDGAPYLRKVDLKTYGNYLELSSALEKMFGCFTIGQCGSHGLAARDGLTESCL 275

Query: 284 MDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
            D LHGSEYVLT+EDKDGDWMLVGDVPWDMFT++CRRLRIMKGSEAIGLAPRAMEKCKNR
Sbjct: 276 KD-LHGSEYVLTFEDKDGDWMLVGDVPWDMFTDSCRRLRIMKGSEAIGLAPRAMEKCKNR 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550522|ref|XP_003543635.1| PREDICTED: auxin-responsive protein IAA27-like [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/348 (62%), Positives = 246/348 (70%), Gaps = 56/348 (16%)

Query: 6   LEHDYIGLSESSSVPRSSDKLSYSSSSSSCTEENYTSSNKACLNFKETELRLGLPGSQSP 65
           LEHDYIGL+E+ S+                        N + LN KETELRLGLPG +SP
Sbjct: 5   LEHDYIGLAENPSM---------------------DGKNSSSLNLKETELRLGLPGCESP 43

Query: 66  GRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSI 125
            RK    L LFGK+++NNN+N            + SL +GAKRGFSDA+D +S   G   
Sbjct: 44  ERKSGSALCLFGKELQNNNNN------------VCSLKAGAKRGFSDAIDTSSVTEG--- 88

Query: 126 NGKPDAELGKGA-VLYSPRGG--------LDDKCKI-VKEVDVLPLSPKPVQEKKNQVPA 175
                    +GA  L+SPRGG        LD +    +KEV  +P S KPVQE  +Q  A
Sbjct: 89  --------SQGASALFSPRGGNVGKPLIGLDTQTNTTIKEVGAVPQSAKPVQENNDQFAA 140

Query: 176 LNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAP 235
            N +    APAAKAQVVGWPPIRSFRKNTMASNL KNND AEGKSG GCLYVKVSMDGAP
Sbjct: 141 TNAH--AIAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKSGFGCLYVKVSMDGAP 198

Query: 236 YLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLT 295
           YLRKVDLK Y+NYMELSSALEKMFSCFTIGQC+S GLPG+DGLSES L DLLHGSEYVLT
Sbjct: 199 YLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLT 258

Query: 296 YEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
           YEDKDGDWMLVGDVPW+MFT++CRRLRIMKGSEAIGLAPRAMEK +++
Sbjct: 259 YEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQ 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.654	0.737	0.582	5.9e-74
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.476	0.485	0.688	4.2e-71
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.482	0.624	0.717	6.7e-70
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.424	0.568	0.708	1.2e-67
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.540	0.788	0.578	9.9e-60
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.505	0.619	0.591	4.2e-59
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.456	0.688	0.672	9.9e-58
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.430	0.646	0.613	1.1e-55
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.465	0.658	0.619	4.2e-55
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.686	0.897	0.5	8.3e-51

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 145/249 (58%), Positives = 174/249 (69%)

Query:   103 VSGAKRGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLS 162
             VSGAKR FSDA++ +++ W  S    P +    G V      G   +  +VK+       
Sbjct:    72 VSGAKRVFSDAINDSNK-WVFS----PGSTTATGDV----GSGSGPRTSVVKD------- 115

Query:   163 PKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVK---NN---DAA 216
              K     K  VP   +    +APA+KAQVVGWPPIRSFRKN+MAS+  +   NN   + A
Sbjct:   116 GKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEA 175

Query:   217 EGKSG--SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPG 274
             E KSG    CLYVKVSM+GAPYLRK+DLK Y +Y+ELSSALEKMFSCFTIGQ  SHG  G
Sbjct:   176 EAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCG 235

Query:   275 QDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAP 334
             +DGL+ESRL DLL GSEYV+TYEDKD DWMLVGDVPW+MF  +C++LRIMK SEAIGLAP
Sbjct:   236 RDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAP 295

Query:   335 RAMEKCKNR 343
             R MEKC++R
Sbjct:   296 RVMEKCRSR 304

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 115/167 (68%), Positives = 141/167 (84%)

Query:   179 NEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLR 238
             N  +S PAAKAQ+VGWPP+RS+RKNT+A+   KN+D  +G+ GSG L+VKVSMDGAPYLR
Sbjct:   172 NNSSSPPAAKAQIVGWPPVRSYRKNTLATTC-KNSDEVDGRPGSGALFVKVSMDGAPYLR 230

Query:   239 KVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYED 298
             KVDL+ Y+NY ELSSALEKMF+ FT+GQC S+G  G+D LSE++L DLL+G +YVLTYED
Sbjct:   231 KVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYED 290

Query:   299 KDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLA--PRAMEKCKNR 343
             KDGDWMLVGDVPW+MF + C++L+IMKG +AIGLA  PRAMEK K R
Sbjct:   291 KDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 630 (226.8 bits), Expect = 6.7e-70, Sum P(3) = 6.7e-70
 Identities = 122/170 (71%), Positives = 139/170 (81%)

Query:   178 ENEPTSAPAAKAQVVGWPPIRSFRKNTMASN--LVKNNDAAEGKSG--SGCLYVKVSMDG 233
             E +   APAAKAQVVGWPPIRS+RKNTMA +   +K  D  E K    SGCLYVKVSMDG
Sbjct:    96 EKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDG 155

Query:   234 APYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYV 293
             APYLRKVDLK+Y NY ELS ALEKMFSCFT+G  +S+G  G+DGLS+ RLMDL +G+E V
Sbjct:   156 APYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELV 215

Query:   294 LTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
             LTYEDKD DWMLVGDVPW MFT++CRRLRIMKGS+A+GLAPRA +K KNR
Sbjct:   216 LTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNR 265

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 555 (200.4 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
 Identities = 114/161 (70%), Positives = 128/161 (79%)

Query:   184 APAAKAQVVGWPPIRSFRKNTMASNLVKNN-DAAEGKSGSGCLYVKVSMDGAPYLRKVDL 242
             APAAKAQVVGWPPIRS+RKNTMA+N +K++ + AE K G G LYVKVSMDGAPYLRKVDL
Sbjct:   110 APAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDL 169

Query:   243 KIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGD 302
             K Y NY +LS+ALEKMF  FT G+         DGLSESR        EYVLTYEDKDGD
Sbjct:   170 KTYKNYKDLSTALEKMFIGFTTGK---------DGLSESR-----KDGEYVLTYEDKDGD 215

Query:   303 WMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
             WMLVGDVPW+MF  +CRRLRIMKGS+AIGLAPRA++K KNR
Sbjct:   216 WMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNR 256

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
 Identities = 118/204 (57%), Positives = 145/204 (71%)

Query:   156 VDV-LPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMAS------N 208
             VD+ L LS     +  ++V   N  E    P AKAQVVGWPP+RSFRKN M+       +
Sbjct:    36 VDLKLNLS-STAMDSVSKVDLENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGD 94

Query:   209 LVKNNDAAEGKSG-----SGCL---YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFS 260
               + ND   G SG     S C    YVKVSMDGAPYLRK+DLK+Y  Y +LS+AL KMFS
Sbjct:    95 ATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFS 154

Query:   261 CFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRR 320
              FTIG     G+  +D ++ES+L+DLL+GS+YV TYEDKDGDWMLVGDVPW+MF ++C+R
Sbjct:   155 SFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKR 212

Query:   321 LRIMKGSEAIGLAPRAMEKCKNRT 344
             +RIMKGSEAIGLAPRA+EKCKNR+
Sbjct:   213 IRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 551 (199.0 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 103/174 (59%), Positives = 130/174 (74%)

Query:   166 VQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCL 225
             V+E++ +   L E    +  AAKAQVVGWPP+RS+RKNT+A++  K     +GKS  GC 
Sbjct:   103 VREEEEEEKGLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCC 162

Query:   226 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMD 285
             YVKVSMDGAPYLRKVDLK YS+Y +LS ALEKMFSCF  G+  SH    +D L++    D
Sbjct:   163 YVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRAD 222

Query:   286 LLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 339
              L   EYVLTYEDKD DWMLVGD+PWD+FT +CR+LRIM+GS+A G+APR++E+
Sbjct:   223 ALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 111/165 (67%), Positives = 134/165 (81%)

Query:   183 SAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEG-KSGSGCL-YVKVSMDGAPYLRKV 240
             S P AKAQVVGWPP+R++RKN MA+   K+ +A E   SG G + +VKVSMDGAPYLRKV
Sbjct:    69 SKPPAKAQVVGWPPVRNYRKNVMANQ--KSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKV 126

Query:   241 DLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQ-DGLSESRLMDLLHGSEYVLTYEDK 299
             DLK+Y++Y +LS AL KMFS FT+G   S+G  G  D ++ES++MDLL+ SEYV +YEDK
Sbjct:   127 DLKMYTSYKDLSDALAKMFSSFTMG---SYGAQGMIDFMNESKVMDLLNSSEYVPSYEDK 183

Query:   300 DGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 344
             DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRAMEK KNR+
Sbjct:   184 DGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
 Identities = 100/163 (61%), Positives = 127/163 (77%)

Query:   185 PAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKI 244
             P AKAQVVGWPP+RS+RKN M S   K++   E  +     +VKVSMDGAPYLRK+DL++
Sbjct:    77 PPAKAQVVGWPPVRSYRKNVMVS-CQKSSGGPEAAA-----FVKVSMDGAPYLRKIDLRM 130

Query:   245 YSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGL----SESRLMDLLHGSEYVLTYEDKD 300
             Y +Y ELS+AL  MFS FT+G+   HG  G++G+    +E +LMDL++  +YV +YEDKD
Sbjct:   131 YKSYDELSNALSNMFSSFTMGK---HG--GEEGMIDFMNERKLMDLVNSWDYVPSYEDKD 185

Query:   301 GDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
             GDWMLVGDVPW MF +TC+RLR+MKGS+AIGLAPRAMEKCK+R
Sbjct:   186 GDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 106/171 (61%), Positives = 131/171 (76%)

Query:   183 SAPAAKAQVVGWPPIRSFRKNTMASNLVKNN--DAAEGKSGS------GCLYVKVSMDGA 234
             S P AKAQVVGWPP+R++RKN M      +   +A+  K+G+      G   VKVSMDGA
Sbjct:    75 SKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGA 134

Query:   235 PYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVL 294
             PYLRKVDLK+Y +Y +LS AL KMFS FT+G   + G+   D ++ES+LM+LL+ SEYV 
Sbjct:   135 PYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVP 192

Query:   295 TYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK-CKNRT 344
             +YEDKDGDWMLVGDVPW+MF E+C+RLRIMKGSEA+GLAPRAMEK CKNR+
Sbjct:   193 SYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 134/268 (50%), Positives = 157/268 (58%)

Query:    92 GYAAPSPLKSLVSGAKRGFSDA-LDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDD-K 149
             G + P P  S  S A     D  L G     GL  +  PD      A   +    L+   
Sbjct:    11 GLSPPPPPPSSSSAAAARADDVDLKGTELRLGLPGSESPDRRPAAIAAAAATATTLELLP 70

Query:   150 CKIVKEV--DVLPLSPKPVQEKKN-------QVPALNENEPTSAP---AAKAQVVGWPPI 197
              K  K V  D   L+P      K        +V A  E++  +AP   AAKAQVVGWPPI
Sbjct:    71 AKGAKRVFPDEAALTPPTAAAGKGKAAREGEEVGAEEEDKKVAAPPQPAAKAQVVGWPPI 130

Query:   198 RSFRKNTMASNLVKNN-DAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALE 256
             RS+RKNTMA+N +K+N +  + K G G LYVKVSMDGAPYLRKVDLK Y NY ++S  LE
Sbjct:   131 RSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLE 190

Query:   257 KMFSCFTIGQCDSHGLPGQ-DGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFT 315
             KMF  F+ G+    G   Q DG             EYVLTYEDKDGDWMLVGDVPW+MFT
Sbjct:   191 KMFIGFSTGK---EGAENQKDG-------------EYVLTYEDKDGDWMLVGDVPWEMFT 234

Query:   316 ETCRRLRIMKGSEAIGLAPRAMEKCKNR 343
             ++CRRLRIMKGS+AIGLAPRA EK KNR
Sbjct:   235 DSCRRLRIMKGSDAIGLAPRAGEKSKNR 262

GO:0009733 "response to auxin stimulus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZSY8	IAA27_ARATH	No assigned EC number	0.5159	0.8401	0.9475	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-89

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  264 bits (678), Expect = 4e-89
 Identities = 131/289 (45%), Positives = 151/289 (52%), Gaps = 101/289 (34%)

Query: 48  LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAK 107
           LN K TELRLGLPG   P  +PS                              S V+  K
Sbjct: 1   LNLKATELRLGLPGGSEPESEPS-----------------------------TSSVTSNK 31

Query: 108 RGFSDALDGASRNWGLSINGKPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQ 167
           RGFS+                   E G                               + 
Sbjct: 32  RGFSE-----------------VTEDGIS---------------------------SSLG 47

Query: 168 EKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYV 227
           E K+ +   +  +    PA KAQVVGWPP+RS+RKN++           E KSGS   YV
Sbjct: 48  EDKSTISVSSNGDSAKPPA-KAQVVGWPPVRSYRKNSLR----------EKKSGS---YV 93

Query: 228 KVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL 287
           KVSMDGAPYLRKVDLK+Y +Y ELSSALEKMFSCFTIG              ES L+DLL
Sbjct: 94  KVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG--------------ESGLLDLL 139

Query: 288 HGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA 336
           +GSEYV TYEDKDGDWMLVGDVPW+MF E+C+RLRIMKGSEAIGLAPR+
Sbjct: 140 NGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.44
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.2
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.92
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.89
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.79
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.19
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.94
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.19
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.12
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.73
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.54
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.15
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	89.99

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=2e-69  Score=489.99  Aligned_cols=215  Identities=60%  Similarity=0.980  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCccccCCCcccchhhccccCCCCccccCC
Q 019236           48 LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSING  127 (344)
Q Consensus        48 lnlk~TELRLGLPGs~sp~r~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~sg~KRgFsd~~~~~s~k~~~~~~~  127 (344)
                      ||||+|||||||||+++|+....                          ..++...+++||||+++|+..+      .+.
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~--------------------------~~~~~~~~~~kR~F~~aid~~~------~~~   48 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSS--------------------------SSSKKSSSGNKRGFSEAIDSSS------SNS   48 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccc--------------------------cccccccCcccccchhhhhhcc------ccc
Confidence            79999999999999999883211                          2334567899999999998653      000


Q ss_pred             CCCcccCCCccccCCCCCCCccccccccccccCCCCCcccccccCCCccCCCCCCCCccccCccccCCCcchhccccccc
Q 019236          128 KPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMAS  207 (344)
Q Consensus       128 ~s~~~~~~~~~~~s~~~~~~~~~~~~~~k~~~~~s~~~~~e~~~~~~~~~~~~~~~~pa~kaqVVGWPPVrS~RKN~l~~  207 (344)
                      .+.          .+... ..   .          .........  .....++...+|++++|+|||||||+||||++..
T Consensus        49 ~~~----------~~~~~-~~---~----------~~~~~~~~~--~~~~~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~  102 (215)
T PF02309_consen   49 QSS----------SSSSS-DS---S----------SSSSSSSTS--SSSSDSSSSSPPASKAQVVGWPPVRSFRKNSLSE  102 (215)
T ss_dssp             ---------------------------------------------------------------BTTBS----S-------
T ss_pred             ccc----------ccccc-cc---C----------ccccccccc--ccccccccCCCCcccccccCCCcccccccccccc
Confidence            000          00000 00   0          000000000  0001111135577899999999999999998772


Q ss_pred             ccccCcccccCCCCCCcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhccc
Q 019236          208 NLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL  287 (344)
Q Consensus       208 ~~~k~~~~~~~k~g~~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll  287 (344)
                      .          ..+..++||||+|||+||||||||++|+||++|+.+|++||.+|.|++|++++      +++..+.+++
T Consensus       103 ~----------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~------~~~~~~~~~~  166 (215)
T PF02309_consen  103 K----------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHG------LNESGLLDLL  166 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c----------ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccc------ccchhhcccc
Confidence            2          11234799999999999999999999999999999999999999999998743      4556677788


Q ss_pred             CCCceEEEEEcCCCCeEEcCCcChHHHHhhceeeEEecCccccCCchhh
Q 019236          288 HGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA  336 (344)
Q Consensus       288 ~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLrImk~Sea~glapr~  336 (344)
                      ++++|+|||||+||||||||||||+|||.+|||||||+.+|++||+|||
T Consensus       167 ~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  167 NGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             -------------------------------------------------
T ss_pred             CCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            8899999999999999999999999999999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.44  E-value=0.00028  Score=54.33  Aligned_cols=68  Identities=24%  Similarity=0.406  Sum_probs=55.0

Q ss_pred             eeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEE
Q 019236          226 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWML  305 (344)
Q Consensus       226 fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML  305 (344)
                      -|||...|. +=|.+.+..--+|++|...+++.|...                          ...+.|.|.|.||||..
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~   55 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT   55 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence            489999987 333588888889999999999999640                          24789999999999998


Q ss_pred             cCC-cChHHHHhhcee
Q 019236          306 VGD-VPWDMFTETCRR  320 (344)
Q Consensus       306 VGD-VPWemFv~svKR  320 (344)
                      +-+ .=|.+.+..+++
T Consensus        56 i~sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   56 ISSDEDLQEAIEQAKE   71 (84)
T ss_dssp             ESSHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHh
Confidence            875 568888887753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.20  E-value=0.0017  Score=50.09  Aligned_cols=65  Identities=23%  Similarity=0.400  Sum_probs=51.9

Q ss_pred             eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236          227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV  306 (344)
Q Consensus       227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  306 (344)
                      |||.-.|.  -|.+-+..--+|++|...+.+.|..                          ....+.|.|+|.||||..+
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~l   55 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVSL   55 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEEe
Confidence            78877554  6778888889999999999999963                          1136899999999999877


Q ss_pred             CC-cChHHHHhhce
Q 019236          307 GD-VPWDMFTETCR  319 (344)
Q Consensus       307 GD-VPWemFv~svK  319 (344)
                      .+ .=|.+.+..++
T Consensus        56 ~sd~Dl~~a~~~~~   69 (81)
T smart00666       56 TSDEDLEEAIEEYD   69 (81)
T ss_pred             cCHHHHHHHHHHHH
Confidence            65 57777777666

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.92  E-value=0.0048  Score=47.16  Aligned_cols=66  Identities=24%  Similarity=0.384  Sum_probs=52.1

Q ss_pred             eeEEEeeCCCccceeecC-CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236          226 YVKVSMDGAPYLRKVDLK-IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM  304 (344)
Q Consensus       226 fVKV~MDG~pIGRKVDLs-~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  304 (344)
                      -|||+-.|.  -|.+=+. ..-+|++|...|.+.|...                          ...+.+.|.|.||||.
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v   53 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV   53 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence            378888876  4555555 8899999999999999740                          0367999999999999


Q ss_pred             EcCC-cChHHHHhhce
Q 019236          305 LVGD-VPWDMFTETCR  319 (344)
Q Consensus       305 LVGD-VPWemFv~svK  319 (344)
                      .+.+ .=|++.+..++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          54 TISSDEDLEEAIEEAR   69 (81)
T ss_pred             EeCCHHHHHHHHHHHh
Confidence            9887 67777777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.89  E-value=0.0028  Score=52.15  Aligned_cols=68  Identities=26%  Similarity=0.322  Sum_probs=51.1

Q ss_pred             eeEEEeeCCCccceeecC---CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCC
Q 019236          226 YVKVSMDGAPYLRKVDLK---IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGD  302 (344)
Q Consensus       226 fVKV~MDG~pIGRKVDLs---~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD  302 (344)
                      -|||.-+|.-+=-++++.   ..-+|++|...+.+.|..                         ....+|+|.|.|.|||
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l-------------------------~~~~~~~l~Y~Dedgd   56 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL-------------------------SPDADLSLTYTDEDGD   56 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCC
Confidence            489999999444455543   467999999999999964                         0125899999999999


Q ss_pred             eEEcCCcChHHHHhhcee
Q 019236          303 WMLVGDVPWDMFTETCRR  320 (344)
Q Consensus       303 wMLVGDVPWemFv~svKR  320 (344)
                      |..+-..  +.|..++.+
T Consensus        57 ~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          57 VVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEEEccH--HHHHHHHHH
Confidence            9988765  555555544

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.79  E-value=0.0045  Score=49.93  Aligned_cols=55  Identities=27%  Similarity=0.420  Sum_probs=44.3

Q ss_pred             eeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEE
Q 019236          226 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWML  305 (344)
Q Consensus       226 fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML  305 (344)
                      =|||...|.  -+.+-|..--+|++|...+.++|..              +           +...|.|-|.|.||||.+
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~--------------~-----------~~~~f~LkY~Ddegd~v~   54 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL--------------D-----------DMSAFDLKYLDDDEEWVL   54 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC--------------C-----------CCCeeEEEEECCCCCeEE
Confidence            389999887  5556666667999999999999964              0           125899999999999987


Q ss_pred             cC
Q 019236          306 VG  307 (344)
Q Consensus       306 VG  307 (344)
                      +-
T Consensus        55 lt   56 (82)
T cd06407          55 LT   56 (82)
T ss_pred             ee
Confidence            64

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.19  E-value=0.014  Score=47.70  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236          227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV  306 (344)
Q Consensus       227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  306 (344)
                      |||.-.|.-+--+++-+..-+|++|...+.++|..                          +  .|.|.|-|.||||.++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEEE
Confidence            78999999777777777788999999999999974                          1  5789999999999876


Q ss_pred             C
Q 019236          307 G  307 (344)
Q Consensus       307 G  307 (344)
                      -
T Consensus        55 s   55 (81)
T cd06396          55 N   55 (81)
T ss_pred             E
Confidence            3

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.94  E-value=0.041  Score=45.10  Aligned_cols=74  Identities=18%  Similarity=0.378  Sum_probs=50.2

Q ss_pred             eeEEEeeCCCccceeecCCC-CChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236          226 YVKVSMDGAPYLRKVDLKIY-SNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM  304 (344)
Q Consensus       226 fVKV~MDG~pIGRKVDLs~y-~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  304 (344)
                      -+|+.-+|.  -|++=+..- -+|.+|...+.+.|...    .+                   ....+.+.|.|.|||+.
T Consensus         2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~----~~-------------------~~~~flIKYkD~dGDlV   56 (81)
T cd06401           2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGK----LG-------------------SSDDVLIKYKDEDGDLI   56 (81)
T ss_pred             eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccc----cC-------------------CcccEEEEEECCCCCEE
Confidence            367777666  466544442 39999999999999741    11                   12478999999999999


Q ss_pred             EcCCc---ChHHHHhhceeeEEe
Q 019236          305 LVGDV---PWDMFTETCRRLRIM  324 (344)
Q Consensus       305 LVGDV---PWemFv~svKRLrIm  324 (344)
                      -+.+-   -|..=+...+||+|.
T Consensus        57 TIts~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          57 TIFDSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             EeccHHHHHHHHhcCcceEEEEe
Confidence            99874   344333444455553

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.19  E-value=0.092  Score=43.34  Aligned_cols=59  Identities=24%  Similarity=0.489  Sum_probs=44.2

Q ss_pred             ceeEEEeeC---CCccceeec--CCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcC
Q 019236          225 LYVKVSMDG---APYLRKVDL--KIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDK  299 (344)
Q Consensus       225 ~fVKV~MDG---~pIGRKVDL--s~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDk  299 (344)
                      +.||.+..|   .+=-|++=|  ....+|++|...+.+||..                         +.+..|+|.|.|.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De   55 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE   55 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence            367888877   233354444  6667999999999999963                         1235899999999


Q ss_pred             CCCeEEcCC
Q 019236          300 DGDWMLVGD  308 (344)
Q Consensus       300 EGDwMLVGD  308 (344)
                      |||..-+..
T Consensus        56 eGDlvtIss   64 (87)
T cd06402          56 EGDLVAFSS   64 (87)
T ss_pred             CCCEEeecC
Confidence            999987765

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.12  E-value=0.048  Score=44.68  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236          227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV  306 (344)
Q Consensus       227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  306 (344)
                      ||..-|..=-=-.+|.....+|+++++-|+.||..                          .+-.|+|.|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l--------------------------~~~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI--------------------------PNVDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC--------------------------CCCcEEEEEeCCCCCEecc
Confidence            66666666222234555569999999999999974                          1247899999999999977


Q ss_pred             C-CcChHHHHhhcee
Q 019236          307 G-DVPWDMFTETCRR  320 (344)
Q Consensus       307 G-DVPWemFv~svKR  320 (344)
                      - |.-+..-+.++++
T Consensus        57 nNDdNf~kAlssa~p   71 (80)
T cd06403          57 NNDDNFLKALSSANP   71 (80)
T ss_pred             cCcHHHHHHHHcCCC
Confidence            5 5666666777773

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.73  E-value=0.069  Score=43.97  Aligned_cols=51  Identities=24%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             CCccceeecC--CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcC
Q 019236          234 APYLRKVDLK--IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG  307 (344)
Q Consensus       234 ~pIGRKVDLs--~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVG  307 (344)
                      .|-||.+=++  ...||.+|..++.+=|+.              +..         ....|.|.|.|.||||.+.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~--------------d~~---------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGD--------------DDF---------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCC--------------ccc---------cCCcccEEEEcCCCCEEEEe
Confidence            4567766554  378999999999999964              100         02478999999999998874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.54  E-value=0.091  Score=43.31  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=44.1

Q ss_pred             eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236          227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV  306 (344)
Q Consensus       227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  306 (344)
                      ||+.-.|.-.--.+|.  .-+|++|.+.+.+||..                         ..+..|++.|.|.|||---+
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~ti   55 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCceee
Confidence            7899999855555565  77899999999999974                         12357999999999998776


Q ss_pred             CC
Q 019236          307 GD  308 (344)
Q Consensus       307 GD  308 (344)
                      ..
T Consensus        56 SS   57 (83)
T cd06404          56 SS   57 (83)
T ss_pred             cC
Confidence            54

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.15  E-value=0.16  Score=41.84  Aligned_cols=66  Identities=23%  Similarity=0.290  Sum_probs=51.2

Q ss_pred             eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236          227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV  306 (344)
Q Consensus       227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  306 (344)
                      -||+-+|.  .|++-...-=+|..|.+.|+.+|....                          -.+.|+|.|.|||..-+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------------------~~~~vtYiDeD~D~ITl   54 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE--------------------------IKVGVTYIDNDNDEITL   54 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh--------------------------hHeEEEEEcCCCCEEEe
Confidence            48888887  899998889999999999999997511                          13789999999998865


Q ss_pred             CC-cChHHHHhhcee
Q 019236          307 GD-VPWDMFTETCRR  320 (344)
Q Consensus       307 GD-VPWemFv~svKR  320 (344)
                      -| .=.+.|..-..|
T Consensus        55 ssd~eL~d~~~~~~~   69 (82)
T cd06397          55 SSNKELQDFYRLSHR   69 (82)
T ss_pred             cchHHHHHHHHhccc
Confidence            54 556666654444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=89.99  E-value=1  Score=37.23  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236          225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM  304 (344)
Q Consensus       225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  304 (344)
                      .=|||+-.|.  .|-|-+..--+|++|...+.++|..                           ...+.|-|.|. ||..
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i   52 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI   52 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence            3489998888  6777777778899999999999964                           12678999999 9999


Q ss_pred             EcCCc-ChHHHHhhce
Q 019236          305 LVGDV-PWDMFTETCR  319 (344)
Q Consensus       305 LVGDV-PWemFv~svK  319 (344)
                      -++|- =.++-+.++|
T Consensus        53 ti~sq~DLd~Ai~~a~   68 (86)
T cd06408          53 TMGDQDDLDMAIDTAR   68 (86)
T ss_pred             cccCHHHHHHHHHHHH
Confidence            88873 4455555555

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 54/192 (28%)

Query: 165 PVQEKKNQVPALNENEPTSA---------PAAKAQVVGWPPIRSFRKNTMASNLVKNNDA 215
           P++ ++ Q P++                   AK  V    P    R+      L    + 
Sbjct: 97  PIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNV 153

Query: 216 A-EGKSGSG--CLYVKVSMDGAPYLRKVDLKIY----SNYMELSSALEKMFS-CFTIGQC 267
             +G  GSG   + + V +       K+D KI+     N     + LE +    + I   
Sbjct: 154 LIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--- 209

Query: 268 DSHGLPGQDGLS---------ESRLMDLLHGSEY-----VLTYEDKDGDWMLVGDV---- 309
           D +     D  S         ++ L  LL    Y     VL             +V    
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------L-----NVQNAK 257

Query: 310 PWDMFTETCRRL 321
            W+ F  +C+ L
Sbjct: 258 AWNAFNLSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.54
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.58
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.78
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.17
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	91.1

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.54  E-value=0.0064  Score=48.99  Aligned_cols=73  Identities=18%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             CCCcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCC
Q 019236          221 GSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKD  300 (344)
Q Consensus       221 g~~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkE  300 (344)
                      +.+.+-||..-|..--=-.+|-....+|++|...|+++|..                          ....|++.|.|.|
T Consensus         3 ~~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~d   56 (86)
T 1wmh_B            3 HMSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAH   56 (86)
T ss_dssp             --CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTT
T ss_pred             CCCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCC
Confidence            34567899998888333345555778999999999999963                          1237899999999


Q ss_pred             CCeEEcCC-cChHHHHhhce
Q 019236          301 GDWMLVGD-VPWDMFTETCR  319 (344)
Q Consensus       301 GDwMLVGD-VPWemFv~svK  319 (344)
                      ||++-+-+ .=..+-+.++|
T Consensus        57 GDLlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           57 GDLLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             SCEEECCSHHHHHHHTTSSS
T ss_pred             CCEeeecCHHHHHHHHHhCC
Confidence            99998865 45556666777

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.58  E-value=0.033  Score=44.82  Aligned_cols=58  Identities=17%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             CcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCC
Q 019236          223 GCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGD  302 (344)
Q Consensus       223 ~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD  302 (344)
                      +.+=|||+-.|.-  |.+.+...-+|++|...|.++|..                         ..+..+++.|.|.|||
T Consensus         5 ~~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD   57 (89)
T 1vd2_A            5 SQVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD   57 (89)
T ss_dssp             SCEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred             CeEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence            4567999999984  455555567999999999999974                         1134789999999999


Q ss_pred             eEEcC
Q 019236          303 WMLVG  307 (344)
Q Consensus       303 wMLVG  307 (344)
                      +.-+-
T Consensus        58 ~itis   62 (89)
T 1vd2_A           58 PCTVS   62 (89)
T ss_dssp             CEECC
T ss_pred             ccccc
Confidence            87654

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.78  E-value=0.046  Score=44.96  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             cceeEEEeeCC----CccceeecCC-----------CCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccC
Q 019236          224 CLYVKVSMDGA----PYLRKVDLKI-----------YSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLH  288 (344)
Q Consensus       224 ~~fVKV~MDG~----pIGRKVDLs~-----------y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~  288 (344)
                      ++-||++..|.    .=-|++=|..           ..+|++|...+.++|..                         +.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~   59 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR   59 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence            56788888762    2345555532           24899999999999963                         12


Q ss_pred             CCceEEEEEcCCCCeEEcCCc-ChHHHHhhce
Q 019236          289 GSEYVLTYEDKDGDWMLVGDV-PWDMFTETCR  319 (344)
Q Consensus       289 gseyvLtYEDkEGDwMLVGDV-PWemFv~svK  319 (344)
                      +..|.|.|.|.|||+.-+-+. =..+-+.+++
T Consensus        60 ~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~   91 (102)
T 2kkc_A           60 PGGFQAHYRAERGDLVAFSSDEELTMAMSYVK   91 (102)
T ss_dssp             SSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             CCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence            457999999999999877663 3344444443

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.17  E-value=0.077  Score=44.81  Aligned_cols=72  Identities=19%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             CcceeEEEeeCC----CccceeecC-----------CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhccc
Q 019236          223 GCLYVKVSMDGA----PYLRKVDLK-----------IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL  287 (344)
Q Consensus       223 ~~~fVKV~MDG~----pIGRKVDLs-----------~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll  287 (344)
                      ..+-||++..|.    .==|++=|.           .-.+|++|...+.++|..                         +
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L   73 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L   73 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence            468899999752    123555553           135999999999999953                         1


Q ss_pred             CCCceEEEEEcCCCCeEEcCCc-ChHHHHhhce
Q 019236          288 HGSEYVLTYEDKDGDWMLVGDV-PWDMFTETCR  319 (344)
Q Consensus       288 ~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK  319 (344)
                      .+..|.|.|.|.|||+.-+-.. =..+-+.+++
T Consensus        74 ~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~  106 (117)
T 2ktr_A           74 RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK  106 (117)
T ss_dssp             CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence            2457999999999998877653 3444444444

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=91.10  E-value=0.89  Score=37.28  Aligned_cols=76  Identities=18%  Similarity=0.381  Sum_probs=55.0

Q ss_pred             CcceeEEEeeCCC----c--cceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEE
Q 019236          223 GCLYVKVSMDGAP----Y--LRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTY  296 (344)
Q Consensus       223 ~~~fVKV~MDG~p----I--GRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtY  296 (344)
                      +++-|||+-+...    +  .|.|=+..--+|++|...+.+-|..+..           +.        .  .....|-|
T Consensus         4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----------~~--------i--~~~~klkY   62 (98)
T 1q1o_A            4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----------NN--------I--SPITKIKY   62 (98)
T ss_dssp             SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----------SC--------C--CCCCCEEE
T ss_pred             ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----------cc--------c--cceeEEEE
Confidence            4567888877431    2  3677777888999999999999975310           00        0  12357999


Q ss_pred             EcCCCCeEEcCC-cChHHHHhhce
Q 019236          297 EDKDGDWMLVGD-VPWDMFTETCR  319 (344)
Q Consensus       297 EDkEGDwMLVGD-VPWemFv~svK  319 (344)
                      +|.|||+...++ .=|+|-+.+++
T Consensus        63 kDEdGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           63 QDEDGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEcCHHHHHHHHHHHH
Confidence            999999988876 58999888863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.57
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.76
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	84.23

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0016  Score=50.47  Aligned_cols=66  Identities=8%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236          225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM  304 (344)
Q Consensus       225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  304 (344)
                      .=|||...|..+=-+|-+....+|.+|...|.+.|..                            ..+.|.|.|.|+||.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l----------------------------~~~~lkY~Ddd~e~v   56 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV   56 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc----------------------------ccceEEEEcCCCCEE
Confidence            4589999888655577777889999999999999963                            146799999999998


Q ss_pred             EcC-CcChHHHHhhc
Q 019236          305 LVG-DVPWDMFTETC  318 (344)
Q Consensus       305 LVG-DVPWemFv~sv  318 (344)
                      ++. |.=.++.+..+
T Consensus        57 ~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1          57 SINSQGEYEEALKMA   71 (85)
T ss_dssp             EECSHHHHHHHHHHH
T ss_pred             EEecHHHHHHHHHHH
Confidence            775 44555555544

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0092  Score=45.07  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=53.8

Q ss_pred             CCcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCC
Q 019236          222 SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDG  301 (344)
Q Consensus       222 ~~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG  301 (344)
                      .+..=|||+..+.  -|.+=|..--+|.+|...+.+.|..                            ..++|-|+|.||
T Consensus        10 ~~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~----------------------------~~~~lkY~Dedg   59 (85)
T d1ip9a_          10 LKTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDT----------------------------DNFKLQTKLFDG   59 (85)
T ss_dssp             CCCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTS----------------------------SCEEEEECCSSS
T ss_pred             CCCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCC----------------------------CceEEEEEcCCC
Confidence            4567899999988  4555556668999999999999953                            147899999999


Q ss_pred             CeEEcCC-cChHHHHhhceeeEE
Q 019236          302 DWMLVGD-VPWDMFTETCRRLRI  323 (344)
Q Consensus       302 DwMLVGD-VPWemFv~svKRLrI  323 (344)
                      ||..+-+ .=+++-+....||.+
T Consensus        60 d~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          60 SGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             CCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CEEEEeCHHHHHHHHHhcCcEEE
Confidence            9986654 456666665555544

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.88  Score=34.57  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=43.2

Q ss_pred             eeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcCC-cChHHHHhh
Q 019236          239 KVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD-VPWDMFTET  317 (344)
Q Consensus       239 KVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~s  317 (344)
                      .+|.....+|++.+.-|+.|-..                          .+-+++|.|.|.+||.+-+-. .-+.--+.+
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l--------------------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~s   70 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALAS   70 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTS
T ss_pred             eeccccccCHHHHHHHHHHHcCC--------------------------CCCcEEEEEecCCCCcccccCchHHHHHHHh
Confidence            57777889999999999999864                          224789999999999998754 455555666


Q ss_pred             ce
Q 019236          318 CR  319 (344)
Q Consensus       318 vK  319 (344)
                      |+
T Consensus        71 a~   72 (82)
T d1wmhb_          71 GP   72 (82)
T ss_dssp             SS
T ss_pred             cC
Confidence            66