Citrus Sinensis ID: 019238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTRT
Secondary Structure (PSIPRED)
cEEEEHHHHHHHcccEEEEEEEccccEEEcccccEEEEcccccccccccccccHHcccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHccccccEEEccEEEccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEccccccEEEEcccEEEccccHHHHHcccccEEEEccccHHHHHHHccHHHHHHHHHHHHccccEEEEEccHHHHHHHccccccccEEccccccccccccEEEEccEEEEccEEEccccccHHHHHHHHHHHHccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHcccEEEEEEEcccEEEEEcccEEEEEcccHHHHHcccccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHccccEEccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccEEcccccEEcccEEHHHHHHccccEEEEccccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccccEEcccccHHHHccccccccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHcccEcccc
Coil and Loop (DISEMBL)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNcrdacgmpgatnlkeSEVLESIVKKQASDGRLYAAICVFLAVALGSwgllkglkdgkvvttrgpgtpMEFVVALVEQLYgkgkadevsgarvmranhgdeftiaefnpvqwtfdnspqilvpiangseeMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLivlpgglggaQAFAKSKKLVNMLKKqkesnrpygaicaspalvlephgllkgkkatafpamcnklsnqseienrvvvdgnlvtsrgpgtsMEFALAIVEKFFGRNKALELAKILLFTRT
Flexible Loop (DISEMBL)
meavitidvlrrsgadVVVASVEKqlrvdachGVKIVADALVSNCRDACGMPgatnlkeseVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLsnqseienrvVVDGNLvtsrgpgtSMEFALAIVEKFFGRNKALELAKILLFTRT
Low Complexity Region (SEG)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTRT
Disordered region (IsUnstruct)
***VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNML********PYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLF***
Disordered Region (DISOPRED)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA**NP*****DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT**
Disordered Region (DISEMBL)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTRT
Disordered Region (DISPRO)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q9MAH3	438	Protein DJ-1 homolog B OS	yes	no	0.988	0.776	0.653	1e-134
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.988	0.867	0.576	1e-114
Q8VY09	472	Protein DJ-1 homolog C OS	no	no	0.985	0.718	0.423	1e-77
Q46948	196	Chaperone protein YajL OS	N/A	no	0.529	0.928	0.430	6e-31
P55880	196	Chaperone protein YajL OS	yes	no	0.529	0.928	0.446	2e-27
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.514	0.936	0.406	6e-27
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.526	0.957	0.419	2e-26
Q8UW59	189	Protein DJ-1 OS=Gallus ga	yes	no	0.526	0.957	0.408	3e-26
Q99497	189	Protein DJ-1 OS=Homo sapi	yes	no	0.526	0.957	0.413	7e-26
Q5E946	189	Protein DJ-1 OS=Bos tauru	yes	no	0.5	0.910	0.429	8e-26

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/372 (65%), Positives = 287/372 (77%), Gaps = 32/372 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 66  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+A G+WGLL+G K              
Sbjct: 126 GGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLAAC 185

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI 
Sbjct: 186 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTIT 245

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+F+ +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VK
Sbjct: 246 ELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVK 305

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 306 LVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 365

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
            EPHGLLKGKKATAFPAMC+KL++QS IE+RV+VDGNL+TSRGPGTS+EFALAIVEKF+G
Sbjct: 366 FEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYG 425

Query: 329 RNKALELAKILL 340
           R K L+L+K  L
Sbjct: 426 REKGLQLSKATL 437

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/373 (57%), Positives = 273/373 (73%), Gaps = 33/373 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAV  I VLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 19  LEAVAMITVLRRGGADVTVASVETQVGVDACHGIKMVADTLLSDITDSVFDLIVLPGGLP 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE++VKKQ SDGRL AAIC   A+ALG+WGLL+G K              
Sbjct: 79  GGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAAT 138

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      DG++VT+RGPGT +EF + L+EQL+GK KADEVS   ++R N G+EFT 
Sbjct: 139 CATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTF 198

Query: 148 AEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207
            E N   W+F+++PQILVPIA  SEE+EA+ ++DILRRAKANVV+A+V + LE+  S + 
Sbjct: 199 TELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANVVIAAVGNSLEVEGSRKA 258

Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           KLVA++L+DE A+ S+DLIVLPGGL GAQ FA  +KLVNML+KQ E+N+PYG ICASPA 
Sbjct: 259 KLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAY 318

Query: 268 VLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
           V EP+GLLKGKKAT  P + +KLS++S IE+RVVVDGN++TSR PGT+MEF+LAIVEKF+
Sbjct: 319 VFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFY 378

Query: 328 GRNKALELAKILL 340
           GR KAL+L K  L
Sbjct: 379 GREKALQLGKATL 391

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score =  290 bits (741), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 228/373 (61%), Gaps = 34/373 (9%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAV+ +DVLRR+GADV VASVE++L V+   G +++AD L+S C D          GMP
Sbjct: 97  IEAVVLVDVLRRAGADVTVASVEQKLEVEGSSGTRLLADVLISKCADQVYDLVALPGGMP 156

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++ E+LE I+K+QA D RLY AI +  A+ L  WGLL   +              
Sbjct: 157 GAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHPAFFGKLPTF 216

Query: 99  ---------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAE 149
                     G++ T+RGPGT  +F ++L EQL+G+  A  +    ++R  + +     E
Sbjct: 217 WAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLLRDGYQNPKN-KE 275

Query: 150 FNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKL 209
           FN + W+ D++P++L+P+ANGSE +E V I D+LRRAK +V V+SV   L I A    K+
Sbjct: 276 FNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERSLRITAFQGTKI 335

Query: 210 VADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           + D LI EAA+ SYDLI+LPGG  G++   KSK L  +L++Q ES R YGA  +S + VL
Sbjct: 336 ITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIYGATNSS-STVL 394

Query: 270 EPHGLLKGKKATAFPAMCNKLSNQSEIEN-RVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
             HGLLK K+ T +P+  ++  NQ  IE   VV+DGN++TS G  T  +F+LAIV K FG
Sbjct: 395 HKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVITSLGLATVTKFSLAIVSKLFG 454

Query: 329 RNKALELAKILLF 341
             +A  +++ L+ 
Sbjct: 455 HARARSVSEGLVH 467

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q46948|YAJL_ECOLI Chaperone protein YajL OS=Escherichia coli (strain K12) GN=yajL PE=1 SV=2

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 108/186 (58%), Gaps = 4/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    +  +C   VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +   
Sbjct: 62  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121

Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
              T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+
Sbjct: 122 GNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEV 181

Query: 336 AKILLF 341
           A  L+ 
Sbjct: 182 ASQLVM 187

Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone. Interacts with ribosomal subunits, ribosomes and polysomes. Confers resistance to oxidative stress.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P55880|YAJL_SALTY Chaperone protein YajL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yajL PE=3 SV=2

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 4/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDE 217
           S Q LV +A GSEE EAV  ID+L R   +V  ASVA    L I+ S  VKL+AD  + E
Sbjct: 2   SAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+ A VL PH +   
Sbjct: 62  VADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPI 121

Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
              T FPA+ +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+
Sbjct: 122 GNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEV 181

Query: 336 AKILLF 341
           A  L+ 
Sbjct: 182 ASQLVM 187

Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score =  121 bits (304), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 105/182 (57%), Gaps = 5/182 (2%)

Query: 164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS- 222
           LV +A G+EEME VI +D++RRA   V VA +A K  +  S +V +  D  +++A K   
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGP 66

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282
           YD+++LPGGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+  G   T 
Sbjct: 67  YDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTT 125

Query: 283 FPAMCNKL---SNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKIL 339
            P   +K+    +    E RV  DGN++TSRGPGTS EFAL IVE+  G   A ++   L
Sbjct: 126 HPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPL 185

Query: 340 LF 341
           + 
Sbjct: 186 IL 187

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 108/186 (58%), Gaps = 5/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +DI+RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAK 62

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALLA-HEIGFGS 121

Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N S     E+RV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQV 181

Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8UW59|PARK7_CHICK Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI  D++RRA   V VA +  K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDAR 62

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD+IVLPGG  GAQ  ++S  + ++LK Q+       AICA P  +L  HG+  G 
Sbjct: 63  KEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTALLA-HGIGFGS 121

Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K    P   +K+ N +     E+RV  DGN++TSRGPGTS EF LAIVE   G+  A ++
Sbjct: 122 KVITHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQV 181

Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLIL 187

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99497|PARK7_HUMAN Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121

Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181

Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5E946|PARK7_BOVIN Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 5/177 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q++      AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALLA-HEIGFGS 121

Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKA 332
           K T  P   +K+ N S     ENRV  DG ++TSRGPGTS EFAL IVE   G+  A
Sbjct: 122 KVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVA 178

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
224114830	442	predicted protein [Populus trichocarpa]	0.997	0.776	0.723	1e-152
225461638	478	PREDICTED: uncharacterized protein LOC10	0.991	0.713	0.721	1e-148
302142910	393	unnamed protein product [Vitis vinifera]	0.991	0.867	0.721	1e-148
449438931	434	PREDICTED: uncharacterized protein LOC10	0.997	0.790	0.685	1e-144
297853104	437	DJ-1 family protein [Arabidopsis lyrata	0.988	0.778	0.663	1e-134
312282985	391	unnamed protein product [Thellungiella h	0.988	0.869	0.653	1e-134
356544078	435	PREDICTED: uncharacterized protein LOC10	0.997	0.788	0.680	1e-133
18404397	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.988	0.776	0.653	1e-132
147775474	427	hypothetical protein VITISV_008479 [Viti	0.909	0.733	0.682	1e-132
21536528	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.988	0.776	0.650	1e-131

>gi|224114830|ref|XP_002316868.1| predicted protein [Populus trichocarpa] gi|222859933|gb|EEE97480.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/376 (72%), Positives = 306/376 (81%), Gaps = 33/376 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAVITIDVLRR GADV VAS+EKQ+RVDA + VK+VAD+L+S C DA         G+P
Sbjct: 66  IEAVITIDVLRRGGADVTVASIEKQIRVDATYDVKLVADSLLSECSDAVFDLITLPGGIP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GATN K  ++LE +VKKQ  DG+LYAA+C   AVA GSWGLL GLK              
Sbjct: 126 GATNFKNCQLLEKLVKKQVEDGKLYAAVCASPAVAFGSWGLLNGLKATCHPFFMDELKSS 185

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      +G VVT+RGPGT MEF VALVE+L+GK KADEVSG  VMR+NHGDE++I
Sbjct: 186 GAITVESRVHEEGNVVTSRGPGTTMEFAVALVEKLFGKEKADEVSGPLVMRSNHGDEYSI 245

Query: 148 AEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207
            E NP+QWTFDN PQ+LVPIANG+EEMEA+IIIDILRRAK NVVVASV D LEILAS +V
Sbjct: 246 KELNPMQWTFDNVPQVLVPIANGTEEMEAIIIIDILRRAKVNVVVASVEDSLEILASRKV 305

Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           KL ADML+DEAAKLSYDLIVLPGGLGGAQAFAKS+KLVNMLKKQ+ESNRPYGA+CASPAL
Sbjct: 306 KLEADMLLDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQRESNRPYGAMCASPAL 365

Query: 268 VLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
           VLEPHGLLKGKKATAFPAMCNKLS+ SEIENRVVVDGNL+TSRGPGT+MEFAL IVEK F
Sbjct: 366 VLEPHGLLKGKKATAFPAMCNKLSDPSEIENRVVVDGNLITSRGPGTTMEFALGIVEKLF 425

Query: 328 GRNKALELAKILLFTR 343
           GR+KALELAK +LFT 
Sbjct: 426 GRDKALELAKPMLFTH 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461638|ref|XP_002283063.1| PREDICTED: uncharacterized protein LOC100253735 [Vitis vinifera]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/374 (72%), Positives = 307/374 (82%), Gaps = 33/374 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVI IDVLRR+GADV VASVEK+L+VDACHGVKIVADAL+S+C D          GMP
Sbjct: 104 MEAVIIIDVLRRAGADVTVASVEKRLQVDACHGVKIVADALISDCADTGFDLISLPGGMP 163

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++  +LES+VKK A+DG+LYA IC   AVALGSWGL+KGLK              
Sbjct: 164 GAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSST 223

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGKVVT+RGPGT MEF V+LVEQLYGK KA+EVSG  VM +N GD+F +A
Sbjct: 224 ATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVMCSNLGDKFIMA 283

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E NP+ W  DN PQILVPIANG+EEMEAVIIID LRRAKANVVVASV DKLEI+AS +VK
Sbjct: 284 ELNPIDWKCDN-PQILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVK 342

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA KLSYDLIVLPGGLGGAQAFA S+KLVN+LK Q+ESN+PYGAICASPALV
Sbjct: 343 LVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALV 402

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
           LEPHGLLKGKKATAFPA+C+KLS+QSEIENRV+VDGNL+TSRGPGTSMEFALAI+EKFFG
Sbjct: 403 LEPHGLLKGKKATAFPALCSKLSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFG 462

Query: 329 RNKALELAKILLFT 342
             KALELAK++LF+
Sbjct: 463 HGKALELAKVMLFS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142910|emb|CBI20205.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/374 (72%), Positives = 307/374 (82%), Gaps = 33/374 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVI IDVLRR+GADV VASVEK+L+VDACHGVKIVADAL+S+C D          GMP
Sbjct: 19  MEAVIIIDVLRRAGADVTVASVEKRLQVDACHGVKIVADALISDCADTGFDLISLPGGMP 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++  +LES+VKK A+DG+LYA IC   AVALGSWGL+KGLK              
Sbjct: 79  GAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSST 138

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGKVVT+RGPGT MEF V+LVEQLYGK KA+EVSG  VM +N GD+F +A
Sbjct: 139 ATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVMCSNLGDKFIMA 198

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E NP+ W  DN PQILVPIANG+EEMEAVIIID LRRAKANVVVASV DKLEI+AS +VK
Sbjct: 199 ELNPIDWKCDN-PQILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVK 257

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA KLSYDLIVLPGGLGGAQAFA S+KLVN+LK Q+ESN+PYGAICASPALV
Sbjct: 258 LVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALV 317

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
           LEPHGLLKGKKATAFPA+C+KLS+QSEIENRV+VDGNL+TSRGPGTSMEFALAI+EKFFG
Sbjct: 318 LEPHGLLKGKKATAFPALCSKLSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFG 377

Query: 329 RNKALELAKILLFT 342
             KALELAK++LF+
Sbjct: 378 HGKALELAKVMLFS 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438931|ref|XP_004137241.1| PREDICTED: uncharacterized protein LOC101212934 [Cucumis sativus] gi|449483151|ref|XP_004156507.1| PREDICTED: uncharacterized protein LOC101228984 [Cucumis sativus]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/375 (68%), Positives = 307/375 (81%), Gaps = 32/375 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAVITIDVLRR+GADV VASVE  +RVDA H +KIVAD+L+S+C D          GMP
Sbjct: 59  LEAVITIDVLRRAGADVTVASVENHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMP 118

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GAT+L++  VLE+IVKKQA+DGRLYAAIC   AV LGSWGLLKGLK              
Sbjct: 119 GATSLRDCAVLENIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLEST 178

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DG+VVT+RGPGT +EF VALV+QLYGK KADEVSG  ++R+NHG E+TIA
Sbjct: 179 ATAVESRVQIDGQVVTSRGPGTTLEFAVALVDQLYGKEKADEVSGPLLLRSNHGHEYTIA 238

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V+WTFD+ P+ILVPIA+G+EEMEAV+IIDILRRAK  VVVASV D LEILAS +VK
Sbjct: 239 EQNQVKWTFDDGPRILVPIASGTEEMEAVMIIDILRRAKGKVVVASVEDTLEILASRKVK 298

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           L AD+L+DEAA+ SYDLIVLPGGLGGA+AFAKS+KLVN+LKKQ+ESN+PYGAICASPALV
Sbjct: 299 LEADLLLDEAAEQSYDLIVLPGGLGGAEAFAKSEKLVNLLKKQRESNKPYGAICASPALV 358

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
           LEPHGLLK KKATAFPA+C+KLS++SEI+NRV+VDGNL+TSRGPGT+MEF+LAIVEK FG
Sbjct: 359 LEPHGLLKDKKATAFPALCDKLSDKSEIDNRVMVDGNLITSRGPGTTMEFSLAIVEKLFG 418

Query: 329 RNKALELAKILLFTR 343
           R+ A++L K ++F +
Sbjct: 419 RDTAVQLGKTMVFIQ 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853104|ref|XP_002894433.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297340275|gb|EFH70692.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/372 (66%), Positives = 286/372 (76%), Gaps = 32/372 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S   D+         G+P
Sbjct: 65  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSEITDSVFDLIMLPGGLP 124

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+ALG+WGLL+G K              
Sbjct: 125 GGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALALGTWGLLEGKKATCYPVFMEKLAAC 184

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+T+ 
Sbjct: 185 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAAEVSGPLVMRPNPGDEYTLT 244

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+FD +PQILVPIANGSEEMEAV IID+LRRAKANVVVA++ D LE++AS +VK
Sbjct: 245 ELNQVNWSFDGTPQILVPIANGSEEMEAVAIIDVLRRAKANVVVAALGDSLEVVASRKVK 304

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+ +DEA K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 305 LVADVRLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 364

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
            EPHGLLKGKKATAFPAMC+KL++QS IE+RV+VDGNL+TSRGPGTS+EFALAIVEKF+G
Sbjct: 365 FEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYG 424

Query: 329 RNKALELAKILL 340
           R K L+LAK  L
Sbjct: 425 REKGLQLAKATL 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282985|dbj|BAJ34358.1| unnamed protein product [Thellungiella halophila]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/372 (65%), Positives = 291/372 (78%), Gaps = 32/372 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GA+V VASVE Q+ VD CHG+K+VAD L+S+  D+         G+P
Sbjct: 19  FEAVVMIDVLRRGGAEVTVASVENQVGVDVCHGIKMVADTLLSDVTDSVFDLIMLPGGLP 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE++VKKQ +DGRL AAIC   A+ALG+WGLL+G K              
Sbjct: 79  GGETLKNCKALENMVKKQETDGRLNAAICCAPALALGTWGLLEGKKATCYPVFMEKLATC 138

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DG++VT+RGPGT MEF V LVEQL+GK KA EVSG  VMR N GDE+TI 
Sbjct: 139 ATAVESRVEIDGRIVTSRGPGTTMEFSVTLVEQLFGKEKAAEVSGPLVMRPNPGDEYTIT 198

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N + W+FD++PQILVPIA+GSEEMEAV IID+LRRAKANVVVA++ + LE++AS +VK
Sbjct: 199 ELNQMNWSFDSTPQILVPIADGSEEMEAVAIIDVLRRAKANVVVAALGNNLEVVASRKVK 258

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K +YDLIVLPGGLGGA+AFA S+KLV+MLK+Q ESN+PYGAICASPALV
Sbjct: 259 LVADVLLDEAEKNTYDLIVLPGGLGGAEAFASSEKLVDMLKRQAESNKPYGAICASPALV 318

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
            EPHGLLKGKKATAFPAMCNKLS+QS IE+RV+VDGNL+TSRGPGTS+EFALAIVEKF+G
Sbjct: 319 FEPHGLLKGKKATAFPAMCNKLSDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYG 378

Query: 329 RNKALELAKILL 340
           R KAL+LAK  L
Sbjct: 379 REKALQLAKATL 390

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544078|ref|XP_003540482.1| PREDICTED: uncharacterized protein LOC100803116 [Glycine max]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/376 (68%), Positives = 284/376 (75%), Gaps = 33/376 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPGA-- 54
           MEAVITIDVLRRSGADV VAS    L V A HGVKI+ADA V +      D   +PG   
Sbjct: 59  MEAVITIDVLRRSGADVTVASASDNLAVQALHGVKIIADAPVRDVAATSFDLVALPGGLQ 118

Query: 55  --TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
              NL++ +VLE +VKK   DGRLYAA+C   AV LG WGLL G K              
Sbjct: 119 GVENLRDCKVLEGLVKKHVEDGRLYAAVCAAPAVVLGPWGLLNGKKATCYPALMEKLAAY 178

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      DG+VVT+R PGT MEF + L+EQL GK KADEV+G  VM +NH DE T 
Sbjct: 179 AAATSESRVQVDGRVVTSRAPGTTMEFAITLIEQLIGKEKADEVAGPLVMHSNHDDEHTF 238

Query: 148 AEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207
            EFNPVQWT DN P+ILVPIANGSEEMEAVIIIDILRRAKA VVVASV DKLEI+AS +V
Sbjct: 239 KEFNPVQWTSDNPPKILVPIANGSEEMEAVIIIDILRRAKAKVVVASVEDKLEIVASRKV 298

Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           KL ADML+DEAAKLSYDLIVLPGGLGGAQ FA S+ LV++LKKQ+ESN  YGAICASPAL
Sbjct: 299 KLEADMLLDEAAKLSYDLIVLPGGLGGAQTFANSETLVSLLKKQRESNIYYGAICASPAL 358

Query: 268 VLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
           VLEPHGLLKGKKATAFP MCNKLS+QSE+ENRVVVDGNL+TSRGPGTS+EFALAIVEK F
Sbjct: 359 VLEPHGLLKGKKATAFPVMCNKLSDQSEVENRVVVDGNLITSRGPGTSIEFALAIVEKLF 418

Query: 328 GRNKALELAKILLFTR 343
           GR  ALELAK ++F R
Sbjct: 419 GRKLALELAKAVVFAR 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404397|ref|NP_564626.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gi|7769869|gb|AAF69547.1|AC008007_22 F12M16.18 [Arabidopsis thaliana] gi|15810459|gb|AAL07117.1| unknown protein [Arabidopsis thaliana] gi|20259561|gb|AAM14123.1| unknown protein [Arabidopsis thaliana] gi|332194795|gb|AEE32916.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/372 (65%), Positives = 287/372 (77%), Gaps = 32/372 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 66  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+A G+WGLL+G K              
Sbjct: 126 GGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLAAC 185

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI 
Sbjct: 186 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTIT 245

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+F+ +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VK
Sbjct: 246 ELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVK 305

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 306 LVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 365

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
            EPHGLLKGKKATAFPAMC+KL++QS IE+RV+VDGNL+TSRGPGTS+EFALAIVEKF+G
Sbjct: 366 FEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYG 425

Query: 329 RNKALELAKILL 340
           R K L+L+K  L
Sbjct: 426 REKGLQLSKATL 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775474|emb|CAN62882.1| hypothetical protein VITISV_008479 [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/375 (68%), Positives = 285/375 (76%), Gaps = 62/375 (16%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVI IDVLRR+GADV VASVEKQL+VDACHGVKIVADAL+S+C D          GMP
Sbjct: 55  MEAVIIIDVLRRAGADVTVASVEKQLQVDACHGVKIVADALISDCADTGFDLISLPGGMP 114

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++   LES+VKK A+DG+LYA IC   AVALGSWGL+KGLK              
Sbjct: 115 GAATLRDCGXLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSST 174

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGKVVT+RGPGT MEF V+LVEQLY K KA+EVSG               
Sbjct: 175 ATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYAKEKANEVSG--------------- 219

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
                       P ILVPIANG+EEMEAVIIID LRRAKANVVVASV DKLEI+AS +VK
Sbjct: 220 ------------PLILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVK 267

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA KLSYDLIVLPGGLGGAQAFA S+KLVN+LK Q+ESN+PYGAICASPALV
Sbjct: 268 LVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALV 327

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
           LEPHGLLKGKKATAFPA+C+KLS+QSEIENRV+VDGNL+TSRGPGTSMEFALAI+EKFFG
Sbjct: 328 LEPHGLLKGKKATAFPALCSKLSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFG 387

Query: 329 RNKALELAKILLFTR 343
             KALELAK   FT+
Sbjct: 388 HGKALELAK---FTK 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536528|gb|AAM60860.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/372 (65%), Positives = 286/372 (76%), Gaps = 32/372 (8%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 66  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+A G+WGLL+G K              
Sbjct: 126 GGETLKNCKPLERMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLAAC 185

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI 
Sbjct: 186 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTIT 245

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+F+ +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VK
Sbjct: 246 ELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVK 305

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K  YDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 306 LVADVLLDEAEKNLYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 365

Query: 269 LEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
            EPHGLLKGKKATAFPAMC+KL++QS IE+RV+VDGNL+TSRGPGTS+EFALAIVEKF+G
Sbjct: 366 FEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYG 425

Query: 329 RNKALELAKILL 340
           R K L+L+K  L
Sbjct: 426 REKGLQLSKATL 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.703	0.552	0.756	3.2e-121
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.703	0.617	0.636	2.4e-108
TAIR|locus:2124246	472	DJ1C "DJ-1 homolog C" [Arabido	0.720	0.525	0.428	1.4e-72
FB|FBgn0039802	205	dj-1beta "dj-1beta" [Drosophil	0.523	0.878	0.426	4.7e-32
UNIPROTKB|Q46948	196	yajL "chaperone, protecting pr	0.526	0.923	0.432	3.8e-30
GENEDB_PFALCIPARUM|PFF1335c	189	PFF1335c "4-methyl-5(B-hydroxy	0.497	0.904	0.387	1.3e-29
FB|FBgn0033885	217	DJ-1alpha "DJ-1alpha" [Drosoph	0.517	0.820	0.417	9.1e-29
UNIPROTKB|D5M8S2	189	DJ-1 "Protein DJ-1" [Gallus ga	0.523	0.952	0.419	3.1e-28
UNIPROTKB|Q7TQ35	189	PARK7 "Protein DJ-1" [Mesocric	0.5	0.910	0.435	6.4e-28
ZFIN|ZDB-GENE-041010-5	189	park7 "parkinson disease (auto	0.511	0.931	0.412	6.4e-28

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
 Identities = 183/242 (75%), Positives = 213/242 (88%)

Query:    99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFD 158
             DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI E N V W+F+
Sbjct:   196 DGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTITELNQVSWSFE 255

Query:   159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA 218
              +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VKLVAD+L+DEA
Sbjct:   256 GTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVKLVADVLLDEA 315

Query:   219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
              K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV EPHGLLKGK
Sbjct:   316 EKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGK 375

Query:   279 KATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKI 338
             KATAFPAMC+KL++QS IE+RV+VDGNL+TSRGPGTS+EFALAIVEKF+GR K L+L+K 
Sbjct:   376 KATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLSKA 435

Query:   339 LL 340
              L
Sbjct:   436 TL 437

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
 Identities = 154/242 (63%), Positives = 198/242 (81%)

Query:    99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFD 158
             DG++VT+RGPGT +EF + L+EQL+GK KADEVS   ++R N G+EFT  E N   W+F+
Sbjct:   150 DGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTFTELNQTNWSFE 209

Query:   159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA 218
             ++PQILVPIA  SEE+EA+ ++DILRRAKANVV+A+V + LE+  S + KLVA++L+DE 
Sbjct:   210 DTPQILVPIAEESEEIEAIALVDILRRAKANVVIAAVGNSLEVEGSRKAKLVAEVLLDEV 269

Query:   219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
             A+ S+DLIVLPGGL GAQ FA  +KLVNML+KQ E+N+PYG ICASPA V EP+GLLKGK
Sbjct:   270 AEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGK 329

Query:   279 KATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKI 338
             KAT  P + +KLS++S IE+RVVVDGN++TSR PGT+MEF+LAIVEKF+GR KAL+L K 
Sbjct:   330 KATTHPVVSDKLSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKALQLGKA 389

Query:   339 LL 340
              L
Sbjct:   390 TL 391

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2124246 DJ1C "DJ-1 homolog C" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 108/252 (42%), Positives = 162/252 (64%)

Query:    91 WGLLKGLK-DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAE 149
             W +   ++  G++ T+RGPGT  +F ++L EQL+G+  A  +    ++R  + +     E
Sbjct:   217 WAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLLRDGYQNPKN-KE 275

Query:   150 FNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKL 209
             FN + W+ D++P++L+P+ANGSE +E V I D+LRRAK +V V+SV   L I A    K+
Sbjct:   276 FNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERSLRITAFQGTKI 335

Query:   210 VADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
             + D LI EAA+ SYDLI+LPGG  G++   KSK L  +L++Q ES R YGA  +S + VL
Sbjct:   336 ITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIYGATNSS-STVL 394

Query:   270 EPHGLLKGKKATAFPAMCNKLSNQSEIEN-RVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
               HGLLK K+ T +P+  ++  NQ  IE   VV+DGN++TS G  T  +F+LAIV K FG
Sbjct:   395 HKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVITSLGLATVTKFSLAIVSKLFG 454

Query:   329 RNKALELAKILL 340
               +A  +++ L+
Sbjct:   455 HARARSVSEGLV 466

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

FB|FBgn0039802 dj-1beta "dj-1beta" [Drosophila melanogaster (taxid:7227)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 78/183 (42%), Positives = 115/183 (62%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S   LV +A G+EEME +I  D+LRRA   V VA +     +  S  V+++ D  + + A
Sbjct:    20 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 79

Query:   220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
                +D++VLPGGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  GK 
Sbjct:    80 SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKS 138

Query:   280 ATAFPAMCNKL-SNQSEIENRVVV-DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
              T++P+M  +L +N S ++++ VV DGNL+TSRGPGT+ EFAL I E+  G+ K  E+AK
Sbjct:   139 LTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAK 198

Query:   338 ILL 340
              LL
Sbjct:   199 GLL 201

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

UNIPROTKB|Q46948 yajL "chaperone, protecting proteins in response to oxidative stress" [Escherichia coli K-12 (taxid:83333)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 80/185 (43%), Positives = 108/185 (58%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
             S   LV +A GSEE EAV  ID+L R    V  ASVA    +  +C   VKL+AD  + E
Sbjct:     2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61

Query:   218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
              A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +   
Sbjct:    62 VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121

Query:   278 KKATAFPAMCNKLSNQSEIENRVVVDGN--LVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
                T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+
Sbjct:   122 GNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEV 181

Query:   336 AKILL 340
             A  L+
Sbjct:   182 ASQLV 186

GO:0042254 "ribosome biogenesis" evidence=IEA;IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042026 "protein refolding" evidence=IDA;IMP

GENEDB_PFALCIPARUM|PFF1335c PFF1335c "4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme" [Plasmodium falciparum (taxid:5833)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/173 (38%), Positives = 106/173 (61%)

Query:   164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY 223
             LV +A+GSE++E + ++D+LRRA  +V  ASV    ++    +  ++AD  I +     Y
Sbjct:     8 LVAVASGSEDVEYITVVDVLRRAGVHVTTASVEKSEQVCLQSKNVVLADTTISKVRNNIY 67

Query:   224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
             D++V+PGG+ G+   ++  + ++MLK+QK +NR Y AICA+P  VL+ H L+   +A A+
Sbjct:    68 DVLVIPGGMKGSNTISECSEFIDMLKEQKANNRLYAAICAAPETVLDRHSLIDDVEAVAY 127

Query:   284 PAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELA 336
             P+      +  +   RV V  N +TS GPG+++EF L IVE   GR  AL LA
Sbjct:   128 PSFERNFKHIGK--GRVCVSKNCITSVGPGSAVEFGLKIVEHLLGRQVALSLA 178

GO:0009228 "thiamine biosynthetic process" evidence=ISS

FB|FBgn0033885 DJ-1alpha "DJ-1alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 76/182 (41%), Positives = 109/182 (59%)

Query:   164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA-KLS 222
             L+ +A G+EEME  I  D+LRR K  V VA + D   +  S  V +V D  ++EA  +  
Sbjct:    34 LIILAPGAEEMEFTISADVLRRGKILVTVAGLHDCEPVKCSRSVVIVPDTSLEEAVTRGD 93

Query:   223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282
             YD++VLPGGL G +A   S  + ++L+ Q+       AICA+P   L  HG+ KGK  T+
Sbjct:    94 YDVVVLPGGLAGNKALMNSSAVGDVLRCQESKGGLIAAICAAPT-ALAKHGIGKGKSITS 152

Query:   283 FPAMCNKLSN-QSEIENRVVV-DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILL 340
              P M  +L      I+++ VV DGN++TSRGPGT+ +FAL I E+  G   A E+AK +L
Sbjct:   153 HPDMKPQLKELYCYIDDKTVVQDGNIITSRGPGTTFDFALKITEQLVGAEVAKEVAKAML 212

Query:   341 FT 342
             +T
Sbjct:   213 WT 214

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

UNIPROTKB|D5M8S2 DJ-1 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 78/186 (41%), Positives = 109/186 (58%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S + LV +A G+EEME VI  D++RRA   V VA +  K  +  S  V +  D  +++A 
Sbjct:     3 SKRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDAR 62

Query:   220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
             K   YD+IVLPGG  GAQ  ++S  + ++LK Q+       AICA P  +L  HG+  G 
Sbjct:    63 KEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTALLA-HGIGFGS 121

Query:   279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
             K T  P   +K+ N +     E+RV  DGN++TSRGPGTS EF LAIVE   G+  A ++
Sbjct:   122 KVTTHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQV 181

Query:   336 -AKILL 340
              A ++L
Sbjct:   182 KAPLIL 187

GO:0003729 "mRNA binding" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|Q7TQ35 PARK7 "Protein DJ-1" [Mesocricetus auratus (taxid:10036)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 77/177 (43%), Positives = 104/177 (58%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S + LV +A G+EEME VI +DI+RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct:     3 SKRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAK 62

Query:   220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
             K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct:    63 KQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALLA-HEIGFGS 121

Query:   279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKA 332
             K T  P   +K+ N S     E+RV  DG ++TSRGPGTS EFALAIVE   G+  A
Sbjct:   122 KVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAA 178

GO:0003729 "mRNA binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

ZFIN|ZDB-GENE-041010-5 park7 "parkinson disease (autosomal recessive, early onset) 7" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 75/182 (41%), Positives = 107/182 (58%)

Query:   164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS- 222
             LV +A G+EEME VI +D++RRA   V VA +A K  +  S +V +  D  +++A K   
Sbjct:     7 LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGP 66

Query:   223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282
             YD+++LPGGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+  G   T 
Sbjct:    67 YDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTT 125

Query:   283 FPAMCNKL---SNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL-AKI 338
              P   +K+    +    E RV  DGN++TSRGPGTS EFAL IVE+  G   A ++ A +
Sbjct:   126 HPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPL 185

Query:   339 LL 340
             +L
Sbjct:   186 IL 187

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAH3	DJ1B_ARATH	No assigned EC number	0.6532	0.9883	0.7762	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	3e-68
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	1e-60
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	3e-47
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	9e-41
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	2e-31
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	7e-31
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-28
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	8e-17
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	2e-14
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	2e-14
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-13
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	1e-13
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	8e-12
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	9e-12
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	2e-11
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	2e-10
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	3e-10
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	7e-10
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	8e-10
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	3e-09
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	4e-06
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	7e-06
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	2e-05
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	0.001
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	0.003

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  210 bits (538), Expect = 3e-68
 Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 1/164 (0%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           +LV +A+G EE+EAV  +D+LRRA   V  AS+  KL + +S  +K+ AD  + +     
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDD 60

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282
           YD IV+PGGL GAQ  A ++KL+ +LK+     +   AICA+PA++ +  GLLKGKKAT 
Sbjct: 61  YDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK-AGLLKGKKATC 119

Query: 283 FPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326
           +P   +KL   + ++  VVVDGN++TSRGPGT+ EFAL IVE  
Sbjct: 120 YPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  192 bits (489), Expect = 1e-60
 Identities = 87/179 (48%), Positives = 117/179 (65%), Gaps = 4/179 (2%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASV--ADKLEILASCQVKLVADMLIDEAAK 220
           +LVP+A G EEMEAVI +D+LRRA   V VA      KL +  S  VK++AD  +++   
Sbjct: 2   VLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVDL 61

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
             +D+IVLPGG+ GA+    SK L+N+LK Q+   +   AICA+PA++L    LL GKKA
Sbjct: 62  EKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLL-GKKA 120

Query: 281 TAFPAMCNKLSNQSEIENR-VVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKI 338
           T +P    KL N +   N+ VVVDGNL+TSRGPGT++EFAL +VE   G+ KA E+A  
Sbjct: 121 TCYPGFKEKLLNGNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  158 bits (401), Expect = 3e-47
 Identities = 84/185 (45%), Positives = 110/185 (59%), Gaps = 4/185 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    LEI  S  VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            A   +D+IVLPGG+ GA+ F  S  LV  +++   S R   AICA+PA VL PH L   
Sbjct: 62  VADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPI 121

Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
              T FP + +K+  +   + RVV D   NL+TS+GPGT+++FAL I++   GR KA E+
Sbjct: 122 GNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEV 181

Query: 336 AKILL 340
           A  L+
Sbjct: 182 ASQLV 186

Length = 196

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  140 bits (356), Expect = 9e-41
 Identities = 68/167 (40%), Positives = 85/167 (50%), Gaps = 33/167 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQ--LRVDACHGVKIVADALVSNCRDAC--------G 50
           MEAVIT+DVLRR+G  V VA       L V    GVKI+ADA + +             G
Sbjct: 13  MEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVDLEKFDVIVLPGG 72

Query: 51  MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGL------------- 97
           MPGA NL+ S++L +I+K Q S G+L AAIC   AV L    LL                
Sbjct: 73  MPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLGKKATCYPGFKEKLLN 132

Query: 98  ----------KDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGA 134
                      DG ++T+RGPGT +EF + LVE L GK KA EV+  
Sbjct: 133 GNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  115 bits (291), Expect = 2e-31
 Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 32/153 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAV  +DVLRR+G +V  AS+EK+L V + HG+K+ AD  +S+             G+P
Sbjct: 12  IEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLP 71

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA NL ++E L  ++K+  + G+L AAIC      L   GLLKG K              
Sbjct: 72  GAQNLADNEKLIKLLKEFNAKGKLIAAICA-APAVLAKAGLLKGKKATCYPGFEDKLGGA 130

Query: 99  ---------DGKVVTTRGPGTPMEFVVALVEQL 122
                    DG ++T+RGPGT  EF + +VE L
Sbjct: 131 NYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  113 bits (285), Expect = 7e-31
 Identities = 58/142 (40%), Positives = 82/142 (57%), Gaps = 5/142 (3%)

Query: 189 NVVVASVADKLEILAS-CQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247
            V V S  D  E+     +VK+ AD  +D+     YD +V+PGG  GA+     +KLV  
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 248 LKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAM--CNKLSNQSEIENRVVVDGN 305
           +K+  ES +P  AIC  P  VL   GLLKG++ T+FP++    K +    ++  VVVDGN
Sbjct: 61  VKEFYESGKPIAAICHGPV-VLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGN 119

Query: 306 -LVTSRGPGTSMEFALAIVEKF 326
            LVTS GPG++ EFAL ++E  
Sbjct: 120 KLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  109 bits (273), Expect = 1e-28
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLV--ADMLIDE 217
             +I + +A+G E++E ++  D+LRRA   V VAS   K + + S +  LV   D   D+
Sbjct: 2   MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDD 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
           A    YD +V+PGG  G +       L+  ++    + +P  AIC  PA++     LLKG
Sbjct: 62  ADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKG 121

Query: 278 KKATAFPAMCNKLSN-----------QSEIENRVVVDGN-LVTSRGPGTSMEFALAIVEK 325
           +KATAFP +   + N                + VVVDGN LVT R P ++  FAL +++ 
Sbjct: 122 RKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKA 181

Query: 326 FFGRNKA 332
             G  KA
Sbjct: 182 LGGAEKA 188

Length = 188

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 76.4 bits (189), Expect = 8e-17
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLV-ADMLIDEAAK 220
           ++ +  A+G E++E    +  LR A A VVVA      EI        V  D+ I +   
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDA 60

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
             YD +V+PGG        +    V  ++   E+ +P  AIC  P +++   G+++G+K 
Sbjct: 61  DDYDALVIPGGTN-PDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA-GVVRGRKL 118

Query: 281 TAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPGTSMEFALAIVEK 325
           T++P++ + L N   + ++  VVVDGNL+TSR P     F  AI++ 
Sbjct: 119 TSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 35/173 (20%)

Query: 2   EAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDA--------CGM 51
           EAV TID+L R G  V  ASV  +  L +    GVK++ADA +    D          G+
Sbjct: 17  EAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGI 76

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL--------GSWGLLKGLKDG--- 100
            GA   ++S +L   V++    GR+ AAIC   A  L        G+      LKD    
Sbjct: 77  KGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPA 136

Query: 101 --------------KVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRA 139
                          ++T++GPGT ++F + +++ L G+ KA EV+   VM A
Sbjct: 137 EQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAA 189

Length = 196

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           +LV   +  E+ E +  +D LR A   V   S  +    +      +  D  IDE     
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVS-KEAGTTVGKHGYSVTVDATIDEVNPEE 60

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282
           YD +V+PGG    +    + K V ++++  E  +P  AIC  P L L   G+L+GKK T+
Sbjct: 61  YDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQL-LISAGVLRGKKLTS 118

Query: 283 FPAMCNKLSNQSEIENR---VVVDGNLVTSRGPGTSMEFALAIVE 324
           +PA+ + + N          VVVDGNLVTSR P     F    ++
Sbjct: 119 YPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLK 163

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 22/159 (13%)

Query: 196 ADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN 255
           AD   + +S  + +  D  ++ A     D++ + GG  G +    +  L+  L++     
Sbjct: 52  ADGGPVRSSSGLSIAPDGGLEAAPP--IDILPVCGG-LGPERPVNAPALLAWLRRAARRG 108

Query: 256 RPYGAICASPALVLEPHGLLKGKKAT-----------AFPAMCNKLSNQSEIENRVVVDG 304
              G +C + A VL   GLL G++AT            FP +          +   V+DG
Sbjct: 109 ARLGGLC-TGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDV-------RVTDRLFVIDG 160

Query: 305 NLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR 343
           + +T  G   +++  LA++ + FG   A  +A+ L+   
Sbjct: 161 DRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDP 199

Length = 328

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 182 ILRRAKANVVVASVADKLE-ILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240
              R  A   V  V++    + +   + ++ D    +   L  D++++PGG G       
Sbjct: 23  RAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDL--DVLLVPGGGGTRAL-VN 79

Query: 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT---AFPAMCNKLSNQSEIE 297
              L++ +++Q    +   ++C + AL+L   GLL G++AT   A      +      ++
Sbjct: 80  DPALLDFIRRQAARAKYVTSVC-TGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVD 138

Query: 298 NRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKIL 339
            R VVDGN+ TS G    ++ ALA+V + FG   A  +A ++
Sbjct: 139 ARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLI 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)

Query: 167 IANGSEEMEAVIIIDILRRAKA------NVVVASVADKLEILASCQVKLVADMLIDEAAK 220
             +G  E++  I +D+L RA         V + S  D   + +   V +  D  + +A +
Sbjct: 2   TFDGFNELDLAIALDVLNRANRLGGDVFRVRIVSP-DAQPVTSMNGVTITVDAPLADAPE 60

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
              D +++PGG  G +A A    L+  L+    + +  GA+C S AL+L   GLL G+ A
Sbjct: 61  A--DAVLVPGG-PGTRAAAADPALLAQLQLADPAGQLLGAVC-SGALLLAEAGLLDGRPA 116

Query: 281 T-------AFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVE 324
           T              K+     I+   V DGNL T+ G   +++ AL ++ 
Sbjct: 117 TTHWTLKPWLREAGPKVL---LIDRPFVADGNLATAGGCLAAIDLALWLIA 164

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 36/142 (25%)

Query: 16  DVVVASVEKQLRVDACHG-VKIVADALVSNCRD--------ACGMPGATNLKESEVLESI 66
           +V V S E    V   +G VK+ AD  + +             G  GA +L++ E L   
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 67  VKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DG 100
           VK+    G+  AAIC    V L + GLLKG +                            
Sbjct: 61  VKEFYESGKPIAAICHGPVV-LAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGN 119

Query: 101 KVVTTRGPGTPMEFVVALVEQL 122
           K+VT+ GPG+  EF + L+E L
Sbjct: 120 KLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 22/159 (13%)

Query: 196 ADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKE 253
            D   +L +  + ++ D  + +      DL+++PG  G       A +  L+  L++Q  
Sbjct: 45  LDGGPVLLAGGILILPDATLADVPA--PDLVIVPGLGGDPDELLLADNPALIAWLRRQHA 102

Query: 254 SNRPYGAICASPALVLEPHGLLKGKKAT-----------AFPAMCNKLSNQSEIENRVVV 302
           +     A C +   +L   GLL G++AT            FP +        + +  VV 
Sbjct: 103 NGATVAAAC-TGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVR------LDPDRVVVT 155

Query: 303 DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLF 341
           DGNL+T+ G     + AL ++E+  G   A  +A+ LL 
Sbjct: 156 DGNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLI 194

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           + V +  G EE+E    +D LR A A V V S                   +  +     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDG--------------GPVESDVDLDD 46

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           YD ++LPGG G     A+ + L+ +L++   + +P   IC    L++
Sbjct: 47  YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLV 93

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           + V +  GSEE+E    +D LR A A V V S                   +  +     
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDG--------------GPVESDVDLDD 46

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           YD ++LPGG G     A  + L+ +L++   + +P   IC    L
Sbjct: 47  YDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
                  DE     YD +V+PGG    +     +K++ +++   E+N+P  AIC  P  +
Sbjct: 63  FAVTADFDEVDPDDYDALVIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QI 120

Query: 269 LEPHGLLKGKKATAFPAMCN--KLSNQSEIENRVVVDGNLVTSRG 311
           L   G+LKG++ TA+PA     +L+  + +++ VVVDGNLVT++ 
Sbjct: 121 LAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQA 165

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 20/131 (15%)

Query: 207 VKLVADMLIDEAAKLSYDLIVLPGGL----GGAQAFAKSKKLVNMLKKQKESNRPYGAIC 262
           +++V D  +D+     YDL++LPGG       A   A    LV    KQ    +P  AIC
Sbjct: 45  LRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLA---GLVRQALKQ---GKPVAAIC 98

Query: 263 ASPALVLEPHGLLKGKKAT----AFPAMCNKLSNQSE--IENRVVVDGNLVTSRGPGTS- 315
            +    L   GLL  +K T     F          +E   E + V DGNL+T+   GT+ 
Sbjct: 99  GATLA-LARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITA--NGTAP 155

Query: 316 MEFALAIVEKF 326
           +EFA  I+   
Sbjct: 156 VEFAAEILRAL 166

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 25/159 (15%)

Query: 196 ADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN 255
            D   + +S  +++  D  +++A  L  D + + GGLG     A +  L+  L++     
Sbjct: 40  LDGAPVTSSNGLRVAPDAALEDAPPL--DYLFVVGGLG--ARRAVTPALLAWLRRAARRG 95

Query: 256 RPYGAICASPALVLEPHGLLKGKKAT-----------AFPAMCNKLSNQSEI-ENRVVVD 303
              G I     L+    GLL G++AT           AFP        + ++  +   +D
Sbjct: 96  VALGGIDTGAFLLAR-AGLLDGRRATVHWEHLEAFAEAFP--------RVQVTRDLFEID 146

Query: 304 GNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT 342
           G+ +T  G   +++  L ++ +  G   A  +A+  L  
Sbjct: 147 GDRLTCAGGTAALDLMLELIARDHGAALAARVAEQFLHD 185

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 2   EAVITIDVLRRSGADVVVASVEKQLR-VDACHGVKIVADALVSNCRDAC---------GM 51
           E ++  DVLRR+G +V VAS E + + V +  G  +VAD    +  DA          G 
Sbjct: 17  ELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGD 76

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDG 100
            G   L+    L + V+   ++G+  AAIC   AV   +  LLKG K  
Sbjct: 77  HGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKAT 125

Length = 188

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 46/201 (22%), Positives = 69/201 (34%), Gaps = 46/201 (22%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVASV------ADKLEILASCQVKLVADMLIDEAAKL-- 221
           G    E     D+   A   V  AS        D   + A            +E  K   
Sbjct: 19  GLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLA 78

Query: 222 -----------SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL--- 267
                       YD I +PGG G       +  L ++L++  E+ +   A+C  PA    
Sbjct: 79  NTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138

Query: 268 VLEPHG--LLKGKKATAFP------AMCNKL---SNQSEIENR-------------VVVD 303
           V    G  L+ GK  T F       A   K+     + E++               VVVD
Sbjct: 139 VKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVD 198

Query: 304 GNLVTSRGPGTSMEFALAIVE 324
           G L+T + P ++   A A+V+
Sbjct: 199 GRLITGQNPASAAAVAEALVK 219

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 203 ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAIC 262
           +S  + LVAD  +D  A  + D +++PGG            L+  L++         ++C
Sbjct: 47  SSSGLSLVADAGLDALA--AADTVIVPGGPDVDGR-PPPPALLAALRRAAARGARVASVC 103

Query: 263 ASPALVLEPHGLLKGKKATAFPAMCNKLSN---QSEIENRV--VVDGNLVTSRGPGTSME 317
            + A VL   GLL G++AT   A    L+       ++  V  V DGN+ TS G    ++
Sbjct: 104 -TGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGID 162

Query: 318 FALAIVEKFFGRNKALELAK 337
             L +V +  G   A  +A+
Sbjct: 163 LCLHLVREDLGAAVANRVAR 182

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 44/159 (27%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIV-ADALVSNCR----DACGMPGAT 55
           +E    +  LR +GA+VVVA  E    +   HG   V  D  +++      DA  +PG T
Sbjct: 13  VELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT 72

Query: 56  N---LKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-----GLLKGLK--------- 98
           N   L+      + V+  A  G+  AAIC       G W     G+++G K         
Sbjct: 73  NPDKLRRDPDAVAFVRAFAEAGKPVAAIC------HGPWVLISAGVVRGRKLTSYPSIKD 126

Query: 99  ----------------DGKVVTTRGPGTPMEFVVALVEQ 121
                           DG ++T+R P     F  A+++ 
Sbjct: 127 DLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 33/114 (28%)

Query: 50  GMPGATNLKESEVLESIVKKQASDGRLYAAICV---FLAVALGSWGLLKGLK-------- 98
           G  G   L     L   +++QA+  +   ++C     LA A    GLL G +        
Sbjct: 70  GGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA----GLLDGRRATTHWAAI 125

Query: 99  ------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGA 134
                             DG + T+ G    ++  +ALV +L+G+  A  V+  
Sbjct: 126 DWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALL 179

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	100.0
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
COG4977	328	Transcriptional regulator containing an amidase do	99.97
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.97
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.97
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.97
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.97
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.95
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.95
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.94
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.94
PRK04155	287	chaperone protein HchA; Provisional	99.94
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.93
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.93
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.9
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.9
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.89
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.89
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.89
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.89
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.89
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.88
COG4977	328	Transcriptional regulator containing an amidase do	99.88
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.88
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.86
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.83
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.83
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.82
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.82
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.8
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.79
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.79
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.77
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.75
PRK04155	287	chaperone protein HchA; Provisional	99.74
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.74
PRK11249	752	katE hydroperoxidase II; Provisional	99.72
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.69
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.61
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.52
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.47
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.16
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.11
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.02
PRK11249	752	katE hydroperoxidase II; Provisional	99.01
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.92
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.82
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.68
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.67
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.59
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.58
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.48
COG3155	217	ElbB Uncharacterized protein involved in an early	98.39
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.38
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.3
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.2
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	98.17
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.08
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.08
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.06
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.05
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.04
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	98.04
PRK08250	235	glutamine amidotransferase; Provisional	97.98
PRK07053	234	glutamine amidotransferase; Provisional	97.91
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.89
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.74
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.73
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.65
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.6
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.6
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	97.59
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.58
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.53
PRK06895	190	putative anthranilate synthase component II; Provi	97.48
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.48
PRK06490	239	glutamine amidotransferase; Provisional	97.45
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	97.43
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.43
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.42
PRK05665	240	amidotransferase; Provisional	97.41
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.38
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.37
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	97.34
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	97.34
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.3
PHA03366	1304	FGAM-synthase; Provisional	97.28
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	97.21
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	97.14
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.07
PRK09065	237	glutamine amidotransferase; Provisional	97.06
PRK00784	488	cobyric acid synthase; Provisional	97.04
PRK08007	187	para-aminobenzoate synthase component II; Provisio	96.96
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	96.93
PRK06774	191	para-aminobenzoate synthase component II; Provisio	96.88
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	96.87
PRK07765	214	para-aminobenzoate synthase component II; Provisio	96.87
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	96.86
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	96.83
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	96.81
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	96.77
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	96.71
PRK07567	242	glutamine amidotransferase; Provisional	96.7
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	96.65
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	96.65
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.64
PRK05670	189	anthranilate synthase component II; Provisional	96.6
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	96.56
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	96.56
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	96.55
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	96.52
PRK08857	193	para-aminobenzoate synthase component II; Provisio	96.46
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	96.42
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	96.4
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	96.37
CHL00101	190	trpG anthranilate synthase component 2	96.33
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	96.33
PRK05637	208	anthranilate synthase component II; Provisional	96.25
PRK05380	533	pyrG CTP synthetase; Validated	96.24
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	96.22
PRK00758	184	GMP synthase subunit A; Validated	96.2
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	96.19
PRK13566	720	anthranilate synthase; Provisional	96.16
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	96.16
PLN02335	222	anthranilate synthase	96.13
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	96.12
TIGR00313	475	cobQ cobyric acid synthase CobQ.	96.07
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	95.98
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	95.96
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	95.87
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	95.83
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	95.74
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.72
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	95.72
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	95.68
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	95.65
PLN02617	538	imidazole glycerol phosphate synthase hisHF	95.64
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	95.57
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	95.43
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	95.43
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	95.41
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	95.08
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	94.49
PLN02327	557	CTP synthase	94.46
PRK08250	235	glutamine amidotransferase; Provisional	94.46
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	94.42
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	94.37
PLN02347	536	GMP synthetase	94.05
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	93.71
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	93.68
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	93.55
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	93.52
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	93.49
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	93.39
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	93.32
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	93.13
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	93.11
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	92.97
PRK00074	511	guaA GMP synthase; Reviewed	92.88
PRK05368	302	homoserine O-succinyltransferase; Provisional	92.87
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	92.67
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	92.61
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	92.05
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	92.04
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	92.0
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	91.76
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	91.72
PRK07053	234	glutamine amidotransferase; Provisional	91.71
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	91.64
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	91.58
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	91.43
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	91.27
COG3442	250	Predicted glutamine amidotransferase [General func	91.14
PRK06186	229	hypothetical protein; Validated	91.11
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	90.69
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	90.53
PHA03366	1304	FGAM-synthase; Provisional	90.44
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	90.28
COG3155	217	ElbB Uncharacterized protein involved in an early	89.52
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	89.44
COG2071	243	Predicted glutamine amidotransferases [General fun	89.1
PRK00784	488	cobyric acid synthase; Provisional	88.19
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	88.08
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	87.83
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	86.84
PLN02889	918	oxo-acid-lyase/anthranilate synthase	86.29
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	86.23
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	85.61
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	85.42
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	85.17
PRK06490	239	glutamine amidotransferase; Provisional	84.62
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	84.51
COG4635	175	HemG Flavodoxin [Energy production and conversion	84.18
PRK06455	155	riboflavin synthase; Provisional	84.11
PRK06895	190	putative anthranilate synthase component II; Provi	84.01
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	83.68
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	83.28
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	82.54
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	81.75
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	81.69
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	81.09
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	80.28
PLN02617	538	imidazole glycerol phosphate synthase hisHF	80.25
COG4285	253	Uncharacterized conserved protein [Function unknow	80.06

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=2e-34  Score=244.59  Aligned_cols=175  Identities=49%  Similarity=0.759  Sum_probs=159.5

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEE--EEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVV--ASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~--~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ||+|+++|||++.|+..+.+.|+.+|+++++  +|++++.++++++|+.+.++..+++...++||+|+||||......+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~   80 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR   80 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence            6899999999999999999999999977765  89887448999999999999999986668899999999964445556


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCc-CCCcEEEeCCeEeCCCcccHHHH
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSE-IENRVVVDGNLVTSRGPGTSMEF  318 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~-~~~~~v~dg~liT~~g~~~~~~~  318 (344)
                      +++.+++||+++++++++|+++|+|+ ++||++|+|+|+++|+||...+.+++..+ .++.+++||+++||+|+.++++|
T Consensus        81 ~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~  159 (179)
T TIGR01383        81 NSKLLLNILKKQESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEF  159 (179)
T ss_pred             hCHHHHHHHHHHHHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHH
Confidence            88999999999999999999999997 55999999999999999999999988666 58899999999999999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHH
Q 019238          319 ALAIVEKFFGRNKALELAK  337 (344)
Q Consensus       319 ~~~li~~l~g~~~a~~~a~  337 (344)
                      ++++|+++.|++.++++++
T Consensus       160 ~l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       160 ALALVELLCGKEKAQEVAA  178 (179)
T ss_pred             HHHHHHHhcCHHHHHHhhc
Confidence            9999999999999999985

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=100.00  E-value=6.8e-33  Score=238.42  Aligned_cols=185  Identities=45%  Similarity=0.648  Sum_probs=167.1

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCC--CceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~--~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      ++|||+|+++|||.+.|+..+.++|+++|+++++++.++  +.++.++.|+.+.++..+++...++||+|+||||.....
T Consensus         1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~   80 (196)
T PRK11574          1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE   80 (196)
T ss_pred             CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence            358999999999999999999999999999999999864  237899999999999999887666899999999965455


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeC--CeEeCCCccc
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGT  314 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg--~liT~~g~~~  314 (344)
                      .+.+++.+++||+++++++++|+++|+|++++|+.+|+|+|+++|.++...+.+.+..+.++.+++|+  |+|||+|+.+
T Consensus        81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a  160 (196)
T PRK11574         81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGT  160 (196)
T ss_pred             hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcch
Confidence            56788899999999999999999999998666788999999999999999998888777777888886  9999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          315 SMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       315 ~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      ++||++++|++++|++.|+++++.|+++.
T Consensus       161 ~~dlal~li~~~~G~~~a~~va~~~~~~~  189 (196)
T PRK11574        161 AIDFALKIIDLLVGREKAHEVASQLVMAA  189 (196)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence            99999999999999999999999998764

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2.9e-33  Score=238.58  Aligned_cols=174  Identities=21%  Similarity=0.318  Sum_probs=159.4

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~  235 (344)
                      |+|+++|||.+.|+..+.|+|+.++       ++++++|.+++ ++.+++|+.+.+|..+++.  ++||+|+||||... 
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~~-   76 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLGA-   76 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCCc-
Confidence            6899999999999999999999876       89999999986 9999999999999988765  78999999999643 


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CCcCCCcEEEeCCeEeCCC
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QSEIENRVVVDGNLVTSRG  311 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~~~~~~~v~dg~liT~~g  311 (344)
                      . +..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++    ..+.++.++.|||+||++|
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g  154 (185)
T cd03136          77 R-RAVTPALLAWLRRAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAG  154 (185)
T ss_pred             c-ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEecc
Confidence            2 6789999999999999999999999997 55999999999999999999988865    3457888999999999999


Q ss_pred             cccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          312 PGTSMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       312 ~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      +.+++++++++|++++|++.|+++++.|+++
T Consensus       155 ~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         155 GTAALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            9999999999999999999999999999875

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=2.3e-33  Score=238.88  Aligned_cols=175  Identities=24%  Similarity=0.441  Sum_probs=161.6

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcC-----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      |+|+++|||++.|+..+.++|+.+|     ++++++|++++ ++.+++|..+.+|.++++.  .+||+|+||||.. ...
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~~-~~~   76 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGGG-TRA   76 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCcc-hhh
Confidence            6899999999999999999999999     99999999996 9999999999999999876  6899999999953 455


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC--Cc-CCCcEEEeCCeEeCCCccc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ--SE-IENRVVVDGNLVTSRGPGT  314 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~--~~-~~~~~v~dg~liT~~g~~~  314 (344)
                      +..++.+++||+++++++|+|+++|+|+. +|+++|+|+|+++|+||...+.+++.  .+ .++.+++|||++||+|+.+
T Consensus        77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~-~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a  155 (183)
T cd03139          77 LVNDPALLDFIRRQAARAKYVTSVCTGAL-LLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSA  155 (183)
T ss_pred             hccCHHHHHHHHHhcccCCEEEEEchHHH-HHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHH
Confidence            67899999999999999999999999975 59999999999999999999988763  33 7889999999999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          315 SMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       315 ~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      +.+|++++|++++|++.++++++.|+++
T Consensus       156 ~~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         156 GIDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            9999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=3.8e-33  Score=238.32  Aligned_cols=175  Identities=23%  Similarity=0.338  Sum_probs=158.4

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~  235 (344)
                      |+|+++|||.+.|+..+.|+|+.++       ++++++|.+++ ++++++|+++.+|..+++.  ++||+|+||||.. .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~~-~   76 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGPD-V   76 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCcc-c
Confidence            5899999999999999999999987       99999999986 9999999999999988855  7899999999954 3


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC----Cc-CCCcEEEeCCeEeCC
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ----SE-IENRVVVDGNLVTSR  310 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~----~~-~~~~~v~dg~liT~~  310 (344)
                      .....++.+++||+++++++++|+++|+|++ +|+++|+|+|+++|+||...+.+++.    .+ .+..+++||+++||+
T Consensus        77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~  155 (187)
T cd03137          77 DGRPPPPALLAALRRAAARGARVASVCTGAF-VLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSA  155 (187)
T ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEECHHHH-HHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcc
Confidence            3467899999999999999999999999975 59999999999999999999888762    23 456789999999999


Q ss_pred             CcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          311 GPGTSMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       311 g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      |+.+++++++++|++++|++.++++++.|.++
T Consensus       156 g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~  187 (187)
T cd03137         156 GVTAGIDLCLHLVREDLGAAVANRVARRLVVP  187 (187)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            99999999999999999999999999998763

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=9e-33  Score=237.57  Aligned_cols=176  Identities=24%  Similarity=0.396  Sum_probs=158.5

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhc------------CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRA------------KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG  230 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~------------~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG  230 (344)
                      |+|+++|||...++..++|+|+.+            +|+++++|.+++ ++.+++|+.+.+|..+++.  ++||+|+|||
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg   77 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG   77 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence            689999999999999999999974            389999999986 9999999999999988876  7899999999


Q ss_pred             CccchH--hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC----C-cCCCcEEEe
Q 019238          231 GLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ----S-EIENRVVVD  303 (344)
Q Consensus       231 G~~~~~--~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~----~-~~~~~~v~d  303 (344)
                      |.....  .+..++.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.|++.    . ..++.+++|
T Consensus        78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~d  156 (195)
T cd03138          78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVF-LLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTD  156 (195)
T ss_pred             CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHH-HHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeC
Confidence            865444  467899999999999999999999999975 59999999999999999998888662    2 335889999


Q ss_pred             CCeEeCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          304 GNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       304 g~liT~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      ||+|||+|+.+++++++++|++++|++.|+++++.|.++
T Consensus       157 g~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         157 GNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             CCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999864

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=100.00  E-value=2.2e-32  Score=228.37  Aligned_cols=162  Identities=48%  Similarity=0.749  Sum_probs=148.8

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceee-eccceeeeeccccccccCCCccEEEEcCCccchHhhhcC
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~  241 (344)
                      |+|+++|||++.|+..+.++|+.+|++++++|++++ ++. ++.|+.+.++..+++..+.+||+|+||||......+.++
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence            689999999999999999999999999999999997 765 579999999999998877899999999996345566789


Q ss_pred             HHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCCcccHHHHHHH
Q 019238          242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALA  321 (344)
Q Consensus       242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g~~~~~~~~~~  321 (344)
                      +.+++||+++++++++|+++|+|+. +|+++|+|+||++|+||...+.+.+..+.++.+|+|||+|||+|+.++++++++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~  158 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAAPA-VLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALK  158 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhHH-HHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHH
Confidence            9999999999999999999999975 599999999999999999999998777777899999999999999999999999


Q ss_pred             HHHHh
Q 019238          322 IVEKF  326 (344)
Q Consensus       322 li~~l  326 (344)
                      +|+++
T Consensus       159 li~~l  163 (163)
T cd03135         159 IVEAL  163 (163)
T ss_pred             HHHhC
Confidence            99975

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=4.3e-31  Score=221.31  Aligned_cols=162  Identities=31%  Similarity=0.495  Sum_probs=147.8

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcC
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~  241 (344)
                      ||+|+++|||++.|+..+.+.|+.+|++++++|.+++ ++.++.|..+.++.++++..+.+||+|+||||.. ...+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHHhccC
Confidence            6899999999999999999999999999999999886 9999999999999999888666899999999954 4555678


Q ss_pred             HHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCC-CcEEEeCCeEeCCCcccHHHH
Q 019238          242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIE-NRVVVDGNLVTSRGPGTSMEF  318 (344)
Q Consensus       242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~-~~~v~dg~liT~~g~~~~~~~  318 (344)
                      +.+.+||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.+++  ..+.+ +.+|+|||+|||+|+.++.+|
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f  157 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGPQ-LLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAF  157 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHH-HHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHH
Confidence            8999999999999999999999975 5999999999999999999998876  34555 799999999999999999999


Q ss_pred             HHHHHHHh
Q 019238          319 ALAIVEKF  326 (344)
Q Consensus       319 ~~~li~~l  326 (344)
                      +.++++.+
T Consensus       158 a~~~~~~l  165 (166)
T TIGR01382       158 NREFLKLL  165 (166)
T ss_pred             HHHHHHHh
Confidence            99999975

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=5.3e-31  Score=220.52  Aligned_cols=160  Identities=33%  Similarity=0.537  Sum_probs=146.7

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeC-CCceeeeccce-eeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVA-DKLEILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~-~~~~v~~~~g~-~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ||+|+++|||++.|+..+.+.|++++++++++|++ ++ +++++.|. .+.++..+++..+.+||+|+||||. ....+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence            68999999999999999999999999999999999 65 99999999 9999999998766689999999996 345566


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHH
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSME  317 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~  317 (344)
                      .++.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.+++  ..+.++.+++|||+|||+|+.++++
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~  157 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHGPW-VLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPA  157 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchHHH-HHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHH
Confidence            789999999999999999999999975 5999999999999999999998876  4566788999999999999999999


Q ss_pred             HHHHHHH
Q 019238          318 FALAIVE  324 (344)
Q Consensus       318 ~~~~li~  324 (344)
                      |+..+++
T Consensus       158 f~~~~~~  164 (165)
T cd03134         158 FNRAILK  164 (165)
T ss_pred             HHHHHHh
Confidence            9999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.97  E-value=8.8e-31  Score=235.98  Aligned_cols=180  Identities=21%  Similarity=0.335  Sum_probs=163.2

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG  231 (344)
                      ++.+|+++++|+|.+..+..+++.|+.+|       +.+.+++.+++ +|.+++|+.|.+|..++..  +++|+++++||
T Consensus         9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~g   85 (328)
T COG4977           9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAA--PPIDILPVCGG   85 (328)
T ss_pred             CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCccccc--CcceEEEEecC
Confidence            46799999999999999999999999987       56889999997 9999999999999999998  56999999888


Q ss_pred             ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CCcCCCcEEEeCCeE
Q 019238          232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QSEIENRVVVDGNLV  307 (344)
Q Consensus       232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~~~~~~~v~dg~li  307 (344)
                      .. .......+++.+||++.+++|..|+++|+|+ |+||++|||+||++|+||.+.+.|++    ....+..+++||++|
T Consensus        86 ~~-~~~~~~~~~l~~~Lr~~~~~G~~l~gictGa-f~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~  163 (328)
T COG4977          86 LG-PERPVNAPALLAWLRRAARRGARLGGLCTGA-FVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRI  163 (328)
T ss_pred             CC-cccccchHHHHHHHHHHHhcCCeEEEehHhH-HHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEE
Confidence            54 3333344889999999999999999999996 66999999999999999999888876    346788999999999


Q ss_pred             eCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          308 TSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       308 T~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      ||+|..+++|+|++||++.+|.++|+++++.|++++
T Consensus       164 T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~  199 (328)
T COG4977         164 TCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDP  199 (328)
T ss_pred             EcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999875

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.97  E-value=2.8e-30  Score=238.91  Aligned_cols=182  Identities=23%  Similarity=0.321  Sum_probs=160.8

Q ss_pred             eecCCCCeEEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEE
Q 019238          155 WTFDNSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIV  227 (344)
Q Consensus       155 ~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~li  227 (344)
                      ++..++++|+|+++|||...|++.+.|+|+.++       |+++++|.+++ +|.+++|+.+.+|..+++.  ++||+|+
T Consensus         4 ~~~~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~li   80 (322)
T PRK09393          4 MMTMHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIV   80 (322)
T ss_pred             cccccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEE
Confidence            344566899999999999999999999997654       68999999986 9999999999999999876  7899999


Q ss_pred             EcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CC-cCCCcEEE
Q 019238          228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QS-EIENRVVV  302 (344)
Q Consensus       228 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~-~~~~~~v~  302 (344)
                      ||||.. ... ..++.+++||+++++++++|+++|+|+. +||++|+|+|+++|+||...+.|++    .. ..+..+++
T Consensus        81 vpGg~~-~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~  157 (322)
T PRK09393         81 IPGWRG-PDA-PVPEPLLEALRAAHARGARLCSICSGVF-VLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVD  157 (322)
T ss_pred             ECCCCc-ccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHH-HHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEe
Confidence            999853 222 4689999999999999999999999975 5999999999999999999988865    22 23456889


Q ss_pred             eCCeEeCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          303 DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       303 dg~liT~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      |||++||+|+.++++++++++++.+|.+.++.+++.|+++
T Consensus       158 ~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~  197 (322)
T PRK09393        158 EGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVP  197 (322)
T ss_pred             cCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence            9999999999999999999999999999999999998874

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.97  E-value=1.4e-30  Score=217.26  Aligned_cols=183  Identities=43%  Similarity=0.663  Sum_probs=171.2

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ++.+.|+..+|.+++|+..++++|++.|++++++++.++.++.++.|..+.+|..+.+.....||+++||||..+...+.
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~   84 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS   84 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence            57888899999999999999999999999999999998889999999999999888887678999999999966678899


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHH
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSME  317 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~  317 (344)
                      ..+.+.+.+++|.+.+++|++||+|+.++|+..|++.|+++|+||..++++..  .++.+..+|.||||+|++|+..+.+
T Consensus        85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e  164 (247)
T KOG2764|consen   85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE  164 (247)
T ss_pred             hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence            99999999999999999999999999787888899999999999999999988  6788999999999999999999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          318 FALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       318 ~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      |++.|+|++.|++.++.+.+.|.+.
T Consensus       165 Fal~lvEqL~GKeka~~v~~~l~l~  189 (247)
T KOG2764|consen  165 FALKLVEQLGGKEKANEVKKPLSLL  189 (247)
T ss_pred             HHHHHHHHhcCchhhhhhhccceee
Confidence            9999999999999999999887753

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.97  E-value=8.1e-30  Score=213.54  Aligned_cols=154  Identities=30%  Similarity=0.494  Sum_probs=135.2

Q ss_pred             EeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          166 PIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |++|||.+.|++.+.|+|+.++       +++++++.+++ ++.+++|+.+.++..+++.  .++|+|+||||.. ....
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~   76 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA   76 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence            6899999999999999999998       99999999996 9999999999999999996  8999999999965 4556


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC-----CcCCCcEEEeCCeEeCCCcc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ-----SEIENRVVVDGNLVTSRGPG  313 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~-----~~~~~~~v~dg~liT~~g~~  313 (344)
                      ..++.+++||+++++++++|+++|+|+ ++||++|+|+|+++|+||...+.|++.     +..++.+|.|||++||+|..
T Consensus        77 ~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~  155 (166)
T PF13278_consen   77 AKDPALLDWLRQQHAQGTYIAAICTGA-LLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPT  155 (166)
T ss_dssp             TT-HHHHHHHHHHHCCTSEEEEETTHH-HHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCC
T ss_pred             ccCHHHHHHhhhhhccceEEeeeehHH-HHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHH
Confidence            788999999999999999999999996 559999999999999999999999873     23489999999999999999


Q ss_pred             cHHHHHHHHHH
Q 019238          314 TSMEFALAIVE  324 (344)
Q Consensus       314 ~~~~~~~~li~  324 (344)
                      +++|++++||+
T Consensus       156 ~~~dl~l~li~  166 (166)
T PF13278_consen  156 AAIDLALYLIE  166 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999999986

...

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.97  E-value=2.1e-29  Score=213.78  Aligned_cols=163  Identities=26%  Similarity=0.453  Sum_probs=143.7

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCc--eeee-------------ccceeeeeccccccccCCCccEE
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL--EILA-------------SCQVKLVADMLIDEAAKLSYDLI  226 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~--~v~~-------------~~g~~v~~~~~~~~~~~~~~D~l  226 (344)
                      ||+|+++|||++.|+..+++.|+++|++++++|++++.  ++.+             ..|..+.++.++++..+.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            68999999999999999999999999999999998862  2333             25889999999998866789999


Q ss_pred             EEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeC
Q 019238          227 VLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDG  304 (344)
Q Consensus       227 iipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg  304 (344)
                      +||||.. ...+..++.+.+||+++++++|+|+++|+|+. +|+++|+|+|+++|+||...+.+++  ..+.++.+++||
T Consensus        81 iv~GG~~-~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~-~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~  158 (180)
T cd03169          81 VIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ-ILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDG  158 (180)
T ss_pred             EEcCCCC-hhhhccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEEC
Confidence            9999963 44455788999999999999999999999975 5999999999999999999988876  346678899999


Q ss_pred             CeEeCCCcccHHHHHHHHHHHh
Q 019238          305 NLVTSRGPGTSMEFALAIVEKF  326 (344)
Q Consensus       305 ~liT~~g~~~~~~~~~~li~~l  326 (344)
                      |+|||+|+.++.+|+.++++.+
T Consensus       159 ~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         159 NLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             CEEEecCCchHHHHHHHHHHhC
Confidence            9999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=3.3e-29  Score=210.52  Aligned_cols=160  Identities=24%  Similarity=0.391  Sum_probs=140.6

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcC
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~  241 (344)
                      |+|+++|||++.|+..+++.|++. ++++++++++++ ++.+++|+.+.++.++++..+.+||+|+||||.. .. ...+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~-~~~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WD-NPEA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-cc-cCCc
Confidence            579999999999999999999997 799999999997 9999999999999999987656899999999953 22 2478


Q ss_pred             HHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcC-chhhhcc-----CCcCCCcEEEeCCeEeCCCcccH
Q 019238          242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPA-MCNKLSN-----QSEIENRVVVDGNLVTSRGPGTS  315 (344)
Q Consensus       242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~-~~~~~~~-----~~~~~~~~v~dg~liT~~g~~~~  315 (344)
                      +.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||. ..+.++.     ..+.++.+++|||+|||+|.. +
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G~~-~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~  155 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGATL-ALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-P  155 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHH-HHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-H
Confidence            8999999999999999999999975 599999999999999985 4555643     356789999999999998755 8


Q ss_pred             HHHHHHHHHHhc
Q 019238          316 MEFALAIVEKFF  327 (344)
Q Consensus       316 ~~~~~~li~~l~  327 (344)
                      ++|++++|+++.
T Consensus       156 ~d~al~~i~~l~  167 (170)
T cd03140         156 VEFAAEILRALD  167 (170)
T ss_pred             HHHHHHHHHHcC
Confidence            999999999863

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.95  E-value=5e-28  Score=201.95  Aligned_cols=196  Identities=43%  Similarity=0.583  Sum_probs=164.1

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|++.|.++|+|.|++|+++|++++.+|+++.|..+.+|..+.|..+  |      ||.++...|.+++.+.+.+++|.+
T Consensus        19 ~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~   98 (247)
T KOG2764|consen   19 YEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAE   98 (247)
T ss_pred             eEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHh
Confidence            58999999999999999999999988999999999999998877642  2      887899999999999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~  127 (344)
                      .|++|++||+||.++|+..|++.|++                         |||+|||+||.++++|++.|+|++.|+..
T Consensus        99 ~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~eFal~lvEqL~GKek  178 (247)
T KOG2764|consen   99 SGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFEFALKLVEQLGGKEK  178 (247)
T ss_pred             cCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHHHHHHHHHHhcCchh
Confidence            99999999999954667777776777                         99999999999999999999999999999


Q ss_pred             HHHHhhcccccccCCCcceeeeccceeeecCCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccce
Q 019238          128 ADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV  207 (344)
Q Consensus       128 a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~  207 (344)
                      ++++.+.+.+.+..                         +.|+-...|.-...+.+.+ +.++.+-+.          |.
T Consensus       179 a~~v~~~l~l~~~~-------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~~----------g~  222 (247)
T KOG2764|consen  179 ANEVKKPLSLLFLP-------------------------VAPEKKAGEACATADHDLE-GRQVPVEKV----------GH  222 (247)
T ss_pred             hhhhhccceeeccc-------------------------cCCCchhcceecceehhhh-cCcceeecc----------cc
Confidence            99999999765532                         5566666777777777777 555433222          23


Q ss_pred             eeeeccccccccCCCccEEEEcCCc
Q 019238          208 KLVADMLIDEAAKLSYDLIVLPGGL  232 (344)
Q Consensus       208 ~v~~~~~~~~~~~~~~D~liipGG~  232 (344)
                      +.....+++++..+.||.|++|||.
T Consensus       223 ~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  223 NFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             ceEEEEEehhhhcccccEEEecCCC
Confidence            3344445899888999999999983

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.95  E-value=2.7e-27  Score=206.78  Aligned_cols=157  Identities=24%  Similarity=0.318  Sum_probs=132.7

Q ss_pred             CCcchhHHHHHHHHHHhcCCeEEEEEeCCCcee---------------------eeccceeeeeccccccccCCCccEEE
Q 019238          169 NGSEEMEAVIIIDILRRAKANVVVASVADKLEI---------------------LASCQVKLVADMLIDEAAKLSYDLIV  227 (344)
Q Consensus       169 ~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v---------------------~~~~g~~v~~~~~~~~~~~~~~D~li  227 (344)
                      .|++..|+..+++.|+++|++++++|++++.++                     .+..+..+.++..+++++..+||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            699999999999999999999999999764111                     12334567778889998889999999


Q ss_pred             EcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-------CCCCCCeeeeCcCch-------------
Q 019238          228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLKGKKATAFPAMC-------------  287 (344)
Q Consensus       228 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-------GlL~g~~~T~~~~~~-------------  287 (344)
                      ||||++++..+.+++.+.++|++|++++|+|++||+|+++ |+.+       ++++||++|+++...             
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~-L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~  178 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAI-LANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR  178 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHH-HHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence            9999877788899999999999999999999999999976 7766       899999999998754             


Q ss_pred             ------hhhcc--CCcC------CCcEEEeCCeEeCCCcccHHHHHHHHHHHh
Q 019238          288 ------NKLSN--QSEI------ENRVVVDGNLVTSRGPGTSMEFALAIVEKF  326 (344)
Q Consensus       288 ------~~~~~--~~~~------~~~~v~dg~liT~~g~~~~~~~~~~li~~l  326 (344)
                            +.+++  +.+.      +..+|+||||||++++.++.+|+++|++.|
T Consensus       179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                  23332  3333      456999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=192.18  Aligned_cols=170  Identities=35%  Similarity=0.587  Sum_probs=149.3

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC-ceeeeccc-eeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK-LEILASCQ-VKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~-~~v~~~~g-~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ++||+|++++||++.|+..|+++|+++|+.++++++.++ ..+.+..| ..+.++..+++.++.+||+|++|||..++..
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            589999999999999999999999999999999999874 35555554 6777778888886679999999999434566


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-CCCCCeeeeCcCchhhhcc------CCcCCC-----cEEEeCC
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFPAMCNKLSN------QSEIEN-----RVVVDGN  305 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-lL~g~~~T~~~~~~~~~~~------~~~~~~-----~~v~dg~  305 (344)
                      +..++.+++|++++++++|+|++||+|+++ |+.+| +++||++|+++...+...+      ..+.+.     .++.||+
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~-L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~  160 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPAV-LAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGN  160 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHHH-HhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECC
Confidence            667799999999999999999999999866 99999 9999999999988887766      566666     9999999


Q ss_pred             -eEeCCCcccHHHHHHHHHHHhcCHH
Q 019238          306 -LVTSRGPGTSMEFALAIVEKFFGRN  330 (344)
Q Consensus       306 -liT~~g~~~~~~~~~~li~~l~g~~  330 (344)
                       ++|+.++.++.+|+.++++.+.+..
T Consensus       161 ~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         161 ALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             eEEEcCCcccHHHHHHHHHHHHhccc
Confidence             9999999999999999999998764

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.94  E-value=2.1e-26  Score=201.10  Aligned_cols=157  Identities=26%  Similarity=0.370  Sum_probs=133.2

Q ss_pred             CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee--------------------ccceeeeeccccccccCCCccEEE
Q 019238          168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA--------------------SCQVKLVADMLIDEAAKLSYDLIV  227 (344)
Q Consensus       168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~--------------------~~g~~v~~~~~~~~~~~~~~D~li  227 (344)
                      .+||++.|+..|++.|+++|++++++|++++ ++..                    ..|..+.++..++++++.+||+|+
T Consensus        17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~   95 (221)
T cd03141          17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF   95 (221)
T ss_pred             cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence            3799999999999999999999999999885 3211                    234568889999999888999999


Q ss_pred             EcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC------CCCCCeeeeCcCchhh------------
Q 019238          228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLKGKKATAFPAMCNK------------  289 (344)
Q Consensus       228 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG------lL~g~~~T~~~~~~~~------------  289 (344)
                      ||||......+.+++.+++||+++++++|+|++||+|+.+ |+++|      +|+||++|+||...+.            
T Consensus        96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~-La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~  174 (221)
T cd03141          96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAA-LLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLL  174 (221)
T ss_pred             ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHH-HHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCH
Confidence            9999754556778999999999999999999999999854 99999      7999999999986554            


Q ss_pred             ---hcc--CCcC-----CCcEEEeCCeEeCCCcccHHHHHHHHHHHh
Q 019238          290 ---LSN--QSEI-----ENRVVVDGNLVTSRGPGTSMEFALAIVEKF  326 (344)
Q Consensus       290 ---~~~--~~~~-----~~~~v~dg~liT~~g~~~~~~~~~~li~~l  326 (344)
                         +++  ..+.     +..+|+|+||||++|+.++.+|++++|+.+
T Consensus       175 ~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         175 EDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence               332  2233     356999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.94  E-value=8.8e-26  Score=202.35  Aligned_cols=166  Identities=22%  Similarity=0.346  Sum_probs=135.1

Q ss_pred             CCeEEEEeC--------------CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeec-----------------ccee
Q 019238          160 SPQILVPIA--------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----------------CQVK  208 (344)
Q Consensus       160 ~~~v~ill~--------------~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~-----------------~g~~  208 (344)
                      .|||+|++.              .|+++.|+..|++.|+++|++++++|++++ ++...                 .+..
T Consensus        49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~  127 (287)
T PRK04155         49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK  127 (287)
T ss_pred             CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence            468888876              589999999999999999999999999885 43221                 1222


Q ss_pred             eeeccccccc----c--CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC------CCC
Q 019238          209 LVADMLIDEA----A--KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLK  276 (344)
Q Consensus       209 v~~~~~~~~~----~--~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG------lL~  276 (344)
                      +..+..++++    .  +.+||+|+||||++.+..+..++.+.++|+++++++|+|++||+|++. |..+|      +++
T Consensus       128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~-Ll~a~~~~g~~ll~  206 (287)
T PRK04155        128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAA-LLAAGVDHGDNPLN  206 (287)
T ss_pred             ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHH-HHHcCCcCCCcccC
Confidence            3333334433    2  579999999999988888999999999999999999999999999976 66688      999


Q ss_pred             CCeeeeCcCchh-------------------hhcc--CCcCC----CcEEEeCCeEeCCCcccHHHHHHHHHHHhc
Q 019238          277 GKKATAFPAMCN-------------------KLSN--QSEIE----NRVVVDGNLVTSRGPGTSMEFALAIVEKFF  327 (344)
Q Consensus       277 g~~~T~~~~~~~-------------------~~~~--~~~~~----~~~v~dg~liT~~g~~~~~~~~~~li~~l~  327 (344)
                      ||++|+++...+                   .+++  ..+.+    ..+|+||||||++|+.++.+|++.+++.|.
T Consensus       207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll  282 (287)
T PRK04155        207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL  282 (287)
T ss_pred             CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence            999999987633                   3432  23333    689999999999999999999999999886

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.93  E-value=1.1e-25  Score=196.76  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=134.7

Q ss_pred             EeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee-----------------ccceeeeeccccccc------cCCC
Q 019238          166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----------------SCQVKLVADMLIDEA------AKLS  222 (344)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----------------~~g~~v~~~~~~~~~------~~~~  222 (344)
                      .+..||++.|+..|+++|+++|++++++|++++ .+..                 ..+..+..+..++++      ++.+
T Consensus        18 ~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~d   96 (232)
T cd03148          18 LFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSE   96 (232)
T ss_pred             CcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhh
Confidence            446899999999999999999999999999886 3321                 133456777888887      4579


Q ss_pred             ccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCC------CCCCeeeeCcCchhhhc-----
Q 019238          223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL------LKGKKATAFPAMCNKLS-----  291 (344)
Q Consensus       223 ~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGl------L~g~~~T~~~~~~~~~~-----  291 (344)
                      ||+|++|||++++..+.+++.+.++++++++++|+|++||+|++. |..+++      ++||++|+++...|...     
T Consensus        97 YDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~-L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~  175 (232)
T cd03148          97 YAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAA-FLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIG  175 (232)
T ss_pred             ceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHH-HHhccCCCCCeeeCCcEEecCCCHHHHhhhhccc
Confidence            999999999988888999999999999999999999999999976 767888      99999999998876422     


Q ss_pred             ---c--------------CCc----CCCcEEEeCCeEeCCCcccHHHHHHHHHHHhc
Q 019238          292 ---N--------------QSE----IENRVVVDGNLVTSRGPGTSMEFALAIVEKFF  327 (344)
Q Consensus       292 ---~--------------~~~----~~~~~v~dg~liT~~g~~~~~~~~~~li~~l~  327 (344)
                         +              +.+    .+..+|+||||||++++.|+..++.++++.++
T Consensus       176 ~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~  232 (232)
T cd03148         176 YMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML  232 (232)
T ss_pred             cccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence               1              111    24479999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.93  E-value=2.8e-25  Score=182.10  Aligned_cols=137  Identities=45%  Similarity=0.749  Sum_probs=120.2

Q ss_pred             eEEEEEeCCCceeeeccc---eeeeeccccccccCCCccEEEEcCCccchHhhhcC-HHHHHHHHHHHhcCCcEEEEcch
Q 019238          189 NVVVASVADKLEILASCQ---VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS-KKLVNMLKKQKESNRPYGAICAS  264 (344)
Q Consensus       189 ~v~~~s~~~~~~v~~~~g---~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~-~~l~~~l~~~~~~~k~I~aic~G  264 (344)
                      +|+++++..+..+.++.|   ..+.++..++++++.+||+|+||||.++...+..+ +.++++|+++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            478899988768999999   99999999999999999999999998767788745 99999999999999999999999


Q ss_pred             hhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcC--CCcEEEeC-CeEeCCCcccHHHHHHHHHHHh
Q 019238          265 PALVLEPHGLLKGKKATAFPAMCNKLSN--QSEI--ENRVVVDG-NLVTSRGPGTSMEFALAIVEKF  326 (344)
Q Consensus       265 ~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~--~~~~v~dg-~liT~~g~~~~~~~~~~li~~l  326 (344)
                      +.+ |+++|+|+|+++|+++...+.++.  ..+.  +..+++|+ ||||++|+.++.+|+++|++.|
T Consensus        81 ~~~-L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   81 PAV-LAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             HHH-HHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             cch-hhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            855 999999999999999999886654  3344  48899999 9999999999999999999987

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.90  E-value=4.8e-23  Score=178.08  Aligned_cols=152  Identities=25%  Similarity=0.343  Sum_probs=121.5

Q ss_pred             CCeEEEEeC-----CCcchhHHHHHHHHHHhcCCeEEEEEeCCCc----------eeeeccceeeeec-------ccccc
Q 019238          160 SPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDE  217 (344)
Q Consensus       160 ~~~v~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~~-------~~~~~  217 (344)
                      ++||+|++.     +||++.|+..|++.|+++|++++++|++++.          ++....++.+..+       ..+++
T Consensus         1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE   80 (217)
T ss_pred             CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence            368999998     9999999999999999999999999998752          1222334444433       57788


Q ss_pred             ccCCCccEEEEcCCccchHh----------hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeC--cC
Q 019238          218 AAKLSYDLIVLPGGLGGAQA----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF--PA  285 (344)
Q Consensus       218 ~~~~~~D~liipGG~~~~~~----------l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~--~~  285 (344)
                      +++.+||+|++|||++.+..          ++.++.+++++++|++++|+|++||+|+++ |+.+.. +||++|++  +.
T Consensus        81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~i-L~~~~~-~gr~~T~~~~~~  158 (217)
T PRK11780         81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAM-LPKILG-AGVKLTIGNDED  158 (217)
T ss_pred             CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHH-HHHHhc-cCcEEEecCChh
Confidence            88889999999999765432          345899999999999999999999999976 766522 89999999  88


Q ss_pred             chhhhcc--CCcCCC---cEEEe--CCeEeCCCcc
Q 019238          286 MCNKLSN--QSEIEN---RVVVD--GNLVTSRGPG  313 (344)
Q Consensus       286 ~~~~~~~--~~~~~~---~~v~d--g~liT~~g~~  313 (344)
                      .++.+++  +.+.+.   .+|+|  +|+||+....
T Consensus       159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~  193 (217)
T PRK11780        159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYM  193 (217)
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCccc
Confidence            8888876  455553   67887  7899998643

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.90  E-value=2.9e-23  Score=175.94  Aligned_cols=132  Identities=52%  Similarity=0.788  Sum_probs=116.4

Q ss_pred             CeeehhHHHHHhCCCeEEE--EEecCCcceecCCCCEEEcCcccccc--ccC------CCchhhhcccCChHHHHHHHHH
Q 019238            1 MEAVITIDVLRRSGADVVV--ASVEKQLRVDACHGVKIVADALVSNC--RDA------CGMPGATNLKESEVLESIVKKQ   70 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~--vs~~~~~~v~~~~g~~~~~d~~~~~~--~~~------gG~~~~~~~~~~~~~~~~l~~~   70 (344)
                      +|+..|+++|+++|+++++  +|+++++++++++|+.+.+|..+++.  +++      ||......+.+++.+++||+++
T Consensus        13 ~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~   92 (179)
T TIGR01383        13 MEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQ   92 (179)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHH
Confidence            3778999999999977775  99986458999999999999988874  223      6644455566789999999999


Q ss_pred             hhCCCEEEEEchhHHHHHHHcCCCCCCC------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChh
Q 019238           71 ASDGRLYAAICVFLAVALGSWGLLKGLK------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (344)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aGll~g~~------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~  126 (344)
                      ++++++|+++|+|+ ++||++|+|+||+                        |||++||+|+.+++||++++|+++.|++
T Consensus        93 ~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~  171 (179)
T TIGR01383        93 ESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFALALVELLCGKE  171 (179)
T ss_pred             HHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHHHHHHHHhcCHH
Confidence            99999999999999 5999999999987                        8999999999999999999999999999


Q ss_pred             HHHHHhh
Q 019238          127 KADEVSG  133 (344)
Q Consensus       127 ~a~~v~~  133 (344)
                      .|+++++
T Consensus       172 ~a~~va~  178 (179)
T TIGR01383       172 KAQEVAA  178 (179)
T ss_pred             HHHHhhc
Confidence            9999875

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.89  E-value=1.2e-22  Score=174.78  Aligned_cols=140  Identities=37%  Similarity=0.564  Sum_probs=121.5

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecC--CcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHH
Q 019238            1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ   70 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~--~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~   70 (344)
                      +|++.|+++|++++++++++|+++  +.+|++++|+.+.+|..+++++  ++      ||......+.+++.+.+||+++
T Consensus        16 ~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~   95 (196)
T PRK11574         16 TEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQF   95 (196)
T ss_pred             hhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHH
Confidence            488999999999999999999864  2379999999999999998764  22      6654556667889999999999


Q ss_pred             hhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CC--CEEcCCCCCcHHHHHHHHHHHHcCh
Q 019238           71 ASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DG--KVVTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg--~~iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                      +++|++|++||+|++++|+.+|+|+|++                       |+  |+|||+|+++++||++++|++++|+
T Consensus        96 ~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~  175 (196)
T PRK11574         96 HRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGR  175 (196)
T ss_pred             HHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchHHHHHHHHHHHhcCH
Confidence            9999999999999942466799998876                       44  9999999999999999999999999


Q ss_pred             hHHHHHhhccccccc
Q 019238          126 GKADEVSGARVMRAN  140 (344)
Q Consensus       126 ~~a~~v~~~~~~~~~  140 (344)
                      +.|+++++.|.++..
T Consensus       176 ~~a~~va~~~~~~~~  190 (196)
T PRK11574        176 EKAHEVASQLVMAAG  190 (196)
T ss_pred             HHHHHHHhhhccCcc
Confidence            999999999987653

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.89  E-value=7.1e-23  Score=174.84  Aligned_cols=134  Identities=25%  Similarity=0.355  Sum_probs=120.1

Q ss_pred             CeeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHH
Q 019238            1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV   67 (344)
Q Consensus         1 ~E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l   67 (344)
                      .|+..|+|+|++++       |+++++|+++ .++++++|+++.+|..+++.+++      || .......+++.+.+||
T Consensus        12 ~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~v~~d~~~~~~~~~D~liipGg-~~~~~~~~~~~l~~~l   89 (187)
T cd03137          12 LDLSGPAEVFGEANRALGPPAYELRVCSPEG-GPVRSSSGLSLVADAGLDALAAADTVIVPGG-PDVDGRPPPPALLAAL   89 (187)
T ss_pred             hHHhHHHHHHHHHHhhcCCCCeEEEEEeCCC-CceeecCCcEEEcCcCccccCCCCEEEECCC-cccccccCCHHHHHHH
Confidence            36788999999887       9999999996 59999999999999988765543      65 3444467899999999


Q ss_pred             HHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHH
Q 019238           68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV  119 (344)
Q Consensus        68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv  119 (344)
                      +++++++++|+++|+|+ ++|+++|+|+|++                            |||++||+|+.+++|+++++|
T Consensus        90 ~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~li  168 (187)
T cd03137          90 RRAAARGARVASVCTGA-FVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLV  168 (187)
T ss_pred             HHHHhcCCEEEEECHHH-HHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccHHHHHHHHHHHH
Confidence            99999999999999999 5999999999987                            899999999999999999999


Q ss_pred             HHHcChhHHHHHhhcccc
Q 019238          120 EQLYGKGKADEVSGARVM  137 (344)
Q Consensus       120 ~~~~g~~~a~~v~~~~~~  137 (344)
                      ++++|++.++++++.|.+
T Consensus       169 ~~~~g~~~a~~~a~~l~~  186 (187)
T cd03137         169 REDLGAAVANRVARRLVV  186 (187)
T ss_pred             HHHhCHHHHHHHHHHhcc
Confidence            999999999999998864

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.89  E-value=9.1e-23  Score=175.32  Aligned_cols=134  Identities=24%  Similarity=0.305  Sum_probs=117.9

Q ss_pred             eeehhHHHHHh------------CCCeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhh--cccCCh
Q 019238            2 EAVITIDVLRR------------SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGAT--NLKESE   61 (344)
Q Consensus         2 E~~~~~~~l~~------------~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~--~~~~~~   61 (344)
                      |+..|+|+|+.            .+|+|+++|+++ ++|++++|+++.+|..+++.+++      ||.....  .+..++
T Consensus        13 ~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~-~~v~s~~g~~i~~d~~~~~~~~~D~liIpgg~~~~~~~~~~~~~   91 (195)
T cd03138          13 SLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDG-GPVLLAGGILILPDATLADVPAPDLVIVPGLGGDPDELLLADNP   91 (195)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCC-CeeecCCCceecccccccccCCCCEEEECCCcCCchhhhhhccH
Confidence            45677787753            469999999996 59999999999999998877655      5533333  467899


Q ss_pred             HHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHH
Q 019238           62 VLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPME  113 (344)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~  113 (344)
                      .+++||+++++++++|++||+|+ ++|+++|+|+||+                            |||++||+|+.+++|
T Consensus        92 ~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~~~~d  170 (195)
T cd03138          92 ALIAWLRRQHANGATVAAACTGV-FLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWAD  170 (195)
T ss_pred             HHHHHHHHHHHcCCEEEEecHHH-HHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHHHHHH
Confidence            99999999999999999999999 5999999999987                            899999999999999


Q ss_pred             HHHHHHHHHcChhHHHHHhhcccc
Q 019238          114 FVVALVEQLYGKGKADEVSGARVM  137 (344)
Q Consensus       114 ~~~~lv~~~~g~~~a~~v~~~~~~  137 (344)
                      |++++|+++.|++.|+++++.|.+
T Consensus       171 ~al~li~~~~G~~~a~~va~~l~~  194 (195)
T cd03138         171 LALHLIERLAGPELAQLVARFLLI  194 (195)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHhcc
Confidence            999999999999999999998865

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.89  E-value=1.2e-22  Score=172.86  Aligned_cols=135  Identities=23%  Similarity=0.384  Sum_probs=122.6

Q ss_pred             CeeehhHHHHHhCC-----CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHH
Q 019238            1 MEAVITIDVLRRSG-----ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKK   69 (344)
Q Consensus         1 ~E~~~~~~~l~~~~-----~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~   69 (344)
                      .|+..++|+|++++     |+++++|+++ .+|++++|+.+.+|..+++...+      || .....+..++.+++||++
T Consensus        12 ~~~~~~~d~~~~a~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg-~~~~~~~~~~~~~~~l~~   89 (183)
T cd03139          12 LDVIGPYEVFGRAPRLAAPFEVFLVSETG-GPVSSRSGLTVLPDTSFADPPDLDVLLVPGG-GGTRALVNDPALLDFIRR   89 (183)
T ss_pred             ehheeHHHHHHHhhccCCCEEEEEEECCC-CceEeCCCCEEcCCcccccCCCCCEEEECCC-cchhhhccCHHHHHHHHH
Confidence            47889999999998     9999999996 59999999999999999876544      66 445557789999999999


Q ss_pred             HhhCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHHc
Q 019238           70 QASDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLY  123 (344)
Q Consensus        70 ~~~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~~  123 (344)
                      +++++++|+++|+|+ ++|+++|+|+||+                          |||++||+|+.+++||++++|+++.
T Consensus        90 ~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~  168 (183)
T cd03139          90 QAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLF  168 (183)
T ss_pred             hcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHHHHHHHHHHHHHh
Confidence            999999999999999 5999999999997                          7999999999999999999999999


Q ss_pred             ChhHHHHHhhccccc
Q 019238          124 GKGKADEVSGARVMR  138 (344)
Q Consensus       124 g~~~a~~v~~~~~~~  138 (344)
                      |++.++++++.|.|+
T Consensus       169 g~~~a~~~a~~~~~~  183 (183)
T cd03139         169 GEELAQAVALLIEYD  183 (183)
T ss_pred             CHHHHHHHHHHhccC
Confidence            999999999998763

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.89  E-value=9.5e-23  Score=173.73  Aligned_cols=133  Identities=20%  Similarity=0.278  Sum_probs=119.2

Q ss_pred             eeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHH
Q 019238            2 EAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVK   68 (344)
Q Consensus         2 E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~   68 (344)
                      |+..|+|+|++++       |+|+++|.++ +++++++|+++.+|..+.+.+++      ||... . +..++.+++||+
T Consensus        13 ~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~~~-~-~~~~~~~~~~l~   89 (185)
T cd03136          13 ALASAIEPLRAANRLAGRELYRWRVLSLDG-APVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGA-R-RAVTPALLAWLR   89 (185)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEEEcCCC-CeeecCCCcEEeCCccccccCCCCEEEEeCCCCc-c-ccCCHHHHHHHH
Confidence            6788999998764       8999999996 69999999999999988776544      66433 3 678999999999


Q ss_pred             HHhhCCCEEEEEchhHHHHHHHcCCCCCCC---------------------------CCCEEcCCCCCcHHHHHHHHHHH
Q 019238           69 KQASDGRLYAAICVFLAVALGSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVEQ  121 (344)
Q Consensus        69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~---------------------------dg~~iT~~g~~~~~~~~~~lv~~  121 (344)
                      ++++++++|+++|+|+ ++|+++|+|+|++                           |||++||+|+.+++||+++++++
T Consensus        90 ~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~ii~~  168 (185)
T cd03136          90 RAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALDLMLELIAR  168 (185)
T ss_pred             HHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHHHHHHHHHHHHHH
Confidence            9999999999999999 5999999999997                           89999999999999999999999


Q ss_pred             HcChhHHHHHhhccccc
Q 019238          122 LYGKGKADEVSGARVMR  138 (344)
Q Consensus       122 ~~g~~~a~~v~~~~~~~  138 (344)
                      ++|++.|+++++.|+++
T Consensus       169 ~~g~~~a~~va~~~~~~  185 (185)
T cd03136         169 DHGAALAARVAEQFLHD  185 (185)
T ss_pred             HhCHHHHHHHHHHHccC
Confidence            99999999999998764

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.88  E-value=1e-21  Score=160.14  Aligned_cols=114  Identities=25%  Similarity=0.357  Sum_probs=104.4

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ++||+|+++|||++.|+..+.+.|+.+|++++++|++++ ++.++.|..+.++.++++..+.+||+|+||||......+.
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~   79 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA   79 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence            378999999999999999999999999999999999997 9999999999999999988666899999999965455557


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCC
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  275 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL  275 (344)
                      .++.+++||+++++++++|+++|+|+. +|+++|+|
T Consensus        80 ~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll  114 (142)
T cd03132          80 PSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIP  114 (142)
T ss_pred             cChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCC
Confidence            889999999999999999999999975 59999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.88  E-value=6.4e-22  Score=178.68  Aligned_cols=155  Identities=18%  Similarity=0.301  Sum_probs=126.3

Q ss_pred             CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHH
Q 019238           15 ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL   88 (344)
Q Consensus        15 ~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~L   88 (344)
                      |.|.+++.++. +|++++|+.+.+|..+++....      +|. ........+++..||++.+++|..+++||+|+ |+|
T Consensus        45 ~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~~~~~v~v~~g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGa-f~L  121 (328)
T COG4977          45 YVWSIVSADGG-PVRSSSGLSIAPDGGLEAAPPIDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGGLCTGA-FVL  121 (328)
T ss_pred             cceEEeecCCC-CcccCCCceEecCCcccccCcceEEEEecCC-CcccccchHHHHHHHHHHHhcCCeEEEehHhH-HHH
Confidence            67999999974 9999999999999999888754      442 33333344889999999999999999999999 699


Q ss_pred             HHcCCCCCCC---------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccC
Q 019238           89 GSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANH  141 (344)
Q Consensus        89 a~aGll~g~~---------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~  141 (344)
                      |++||||||+                           ||+++||+|..+++|||++||++.+|.+.|.+|++.+++++..
T Consensus       122 A~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R  201 (328)
T COG4977         122 AEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIR  201 (328)
T ss_pred             HHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhcccc
Confidence            9999999999                           9999999999999999999999999999999999999998744


Q ss_pred             CCcceeeeccceeeecCCCCeEEEEeCCCcchhHHHHHHHHHHhc
Q 019238          142 GDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRA  186 (344)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~  186 (344)
                      ...              ...++......+.....+..+++.++..
T Consensus       202 ~~~--------------~~Q~~~~~~~~~~~~~~l~~~i~~me~n  232 (328)
T COG4977         202 SGG--------------DRQRLPLLGRLGHRDPRLLRAIELMEAN  232 (328)
T ss_pred             CCC--------------ccccccccccCCCCCHHHHHHHHHHHHh
Confidence            211              0122333344455666777777777664

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.88  E-value=4.6e-22  Score=170.81  Aligned_cols=152  Identities=24%  Similarity=0.323  Sum_probs=118.7

Q ss_pred             CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCc----------eeeeccceeeeec-------cccccccCCCccEEEEcC
Q 019238          168 ANGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDEAAKLSYDLIVLPG  230 (344)
Q Consensus       168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~~-------~~~~~~~~~~~D~liipG  230 (344)
                      +|||++.|+..|+++|+++|++++++|++++.          .+....++.+.++       .+++++++.+||+|+|||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG   90 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG   90 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence            57999999999999999999999999997642          2223445556555       678888778999999999


Q ss_pred             CccchHhh----------hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCc--Cchhhhcc--CCcC
Q 019238          231 GLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP--AMCNKLSN--QSEI  296 (344)
Q Consensus       231 G~~~~~~l----------~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~--~~~~~~~~--~~~~  296 (344)
                      |++....+          +.++.+++++++|++++|+|++||+|+++ |+.++. +||++|+++  ..++.+++  +.+.
T Consensus        91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~-L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~  168 (213)
T cd03133          91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPAL-AAKILG-EGVEVTIGNDAGTAAAIEKMGAEHV  168 (213)
T ss_pred             CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHH-HHHHhc-cCCeEEccCCHHHHHHHHHCCCEEE
Confidence            97654443          24889999999999999999999999976 777655 999999999  78888875  4444


Q ss_pred             C---CcEEEe--CCeEeCCCcc---cHHHHHHH
Q 019238          297 E---NRVVVD--GNLVTSRGPG---TSMEFALA  321 (344)
Q Consensus       297 ~---~~~v~d--g~liT~~g~~---~~~~~~~~  321 (344)
                      +   ..+++|  ||||||+...   +..+.++.
T Consensus       169 d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~  201 (213)
T cd03133         169 NCPVEEIVVDEKNKVVTTPAYMLADSIHEIADG  201 (213)
T ss_pred             eCCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence            3   366666  7999998653   44444444

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.86  E-value=1.4e-21  Score=163.06  Aligned_cols=119  Identities=47%  Similarity=0.768  Sum_probs=105.6

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcce-ecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRV-DACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v-~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      |+..|+++|+.++|+++++|++++ ++ .+++|+.+.+|..+++.+  ++      ||......+.+++++++||+++++
T Consensus        13 e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~   91 (163)
T cd03135          13 EAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNA   91 (163)
T ss_pred             HHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHH
Confidence            678899999999999999999975 65 468999999999998873  33      664255666789999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      ++++|++||+|+ ++|+++|+|+||+                       |||++||+|+.+++||++++|+++
T Consensus        92 ~~~~i~~ic~g~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135          92 KGKLIAAICAAP-AVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             cCCEEEEEchhH-HHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHHHHhC
Confidence            999999999999 5999999999997                       899999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.83  E-value=3e-20  Score=171.95  Aligned_cols=137  Identities=23%  Similarity=0.342  Sum_probs=120.1

Q ss_pred             CeeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHH
Q 019238            1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV   67 (344)
Q Consensus         1 ~E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l   67 (344)
                      +|+..|+|+|+.++       |+|+++|+++ .+|++++|+.+.+|..+++.+++      || .+... ..++.+.+||
T Consensus        23 ~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~-~~v~ss~g~~i~~d~~~~~~~~~D~livpGg-~~~~~-~~~~~l~~~l   99 (322)
T PRK09393         23 FEFGCAVEIFGLPRPELGVDWYRFAVAAVEP-GPLRAAGGITVVADGGLELLDRADTIVIPGW-RGPDA-PVPEPLLEAL   99 (322)
T ss_pred             hHHHHHHHHHHHHHhhcCCCceEEEEEECCC-CceEeCCCcEEeCCCCccccCCCCEEEECCC-Ccccc-cCCHHHHHHH
Confidence            47789999995432       7999999996 59999999999999999877654      54 33332 4689999999


Q ss_pred             HHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHH
Q 019238           68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV  119 (344)
Q Consensus        68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv  119 (344)
                      +++++++++|++||+|+ ++||++|||+|++                            |||++||+|+.+++|++++++
T Consensus       100 ~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~iiT~~G~~a~~d~~l~li  178 (322)
T PRK09393        100 RAAHARGARLCSICSGV-FVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQILTSAGSAAGIDLCLHLV  178 (322)
T ss_pred             HHHHHcCCEEEEEcHHH-HHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEEecccHHHHHHHHHHHH
Confidence            99999999999999999 5999999999998                            799999999999999999999


Q ss_pred             HHHcChhHHHHHhhcccccccC
Q 019238          120 EQLYGKGKADEVSGARVMRANH  141 (344)
Q Consensus       120 ~~~~g~~~a~~v~~~~~~~~~~  141 (344)
                      ++..|.+.++.+++.|++++..
T Consensus       179 ~~~~g~~~a~~va~~ll~~~~~  200 (322)
T PRK09393        179 RRDFGSEAANRVARRLVVPPHR  200 (322)
T ss_pred             HHHhCHHHHHHHHHHhCcCcCC
Confidence            9999999999999999987543

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.83  E-value=2.1e-20  Score=156.41  Aligned_cols=116  Identities=28%  Similarity=0.447  Sum_probs=103.7

Q ss_pred             eeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHH
Q 019238            2 EAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVK   68 (344)
Q Consensus         2 E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~   68 (344)
                      |+..++|+|+.++       |+++++|.++ +++.+++|+.+.++..+++....      ||. .......++.+++||+
T Consensus        10 ~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~-~~v~~s~g~~i~~~~~~~~~~~~D~lvvpg~~-~~~~~~~~~~l~~~l~   87 (166)
T PF13278_consen   10 ELAGPLDVLRAANRLSGEPLFEVRLVSPTG-GPVTSSSGLRIQPDGSLDDAPDFDILVVPGGP-GFDAAAKDPALLDWLR   87 (166)
T ss_dssp             HHHHHHHHHTTCTHHCTTTTEEEEEEESSS-CEEEBTTSEEEEESEETCCCSCCSEEEEE-ST-THHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhchhhcCCCCeEEEEEecCC-CeeeecCCeEEEeccChhhcccCCEEEeCCCC-CchhcccCHHHHHHhh
Confidence            6778999998888       9999999996 59999999999999999986644      653 3455678899999999


Q ss_pred             HHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHHH
Q 019238           69 KQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVE  120 (344)
Q Consensus        69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv~  120 (344)
                      ++++++++++++|+|+ ++||++|+|+|++                            |||++||+|+.+++|+++++||
T Consensus        88 ~~~~~~~~i~aic~G~-~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen   88 QQHAQGTYIAAICTGA-LLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             HHHCCTSEEEEETTHH-HHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             hhhccceEEeeeehHH-HHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHHHHHHHHHHhC
Confidence            9999999999999999 6999999999998                            9999999999999999999997

...

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.82  E-value=4.9e-20  Score=154.23  Aligned_cols=119  Identities=29%  Similarity=0.364  Sum_probs=106.5

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      .|+..|+++|+++||+++++|+++ +++++++|+.+.++..+++++  ++      || .....+..++.+.+||+++++
T Consensus        13 ~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg-~~~~~~~~~~~l~~~l~~~~~   90 (166)
T TIGR01382        13 SELLYPLDRLREAGHEVDTVSKEA-GTTVGKHGYSVTVDATIDEVNPEEYDALVIPGG-RAPEYLRLNNKAVRLVREFVE   90 (166)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCC-CceeccCCceeeccCChhhCCHHHCcEEEECCC-CCHHHhccCHHHHHHHHHHHH
Confidence            377899999999999999999986 589999999999999998775  22      66 345556678999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++++++||+|+ ++||++|||+||+                          |||+|||+|+.++.+|+.++++++
T Consensus        91 ~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa~~~~~~l  165 (166)
T TIGR01382        91 KGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL  165 (166)
T ss_pred             cCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHHHHHHHHh
Confidence            999999999999 5999999999998                          899999999999999999999986

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.82  E-value=7.9e-20  Score=153.52  Aligned_cols=117  Identities=28%  Similarity=0.403  Sum_probs=102.5

Q ss_pred             CeeehhHHHHHhC-CCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            1 MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         1 ~E~~~~~~~l~~~-~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      +|++.|+++|+++ +|+|+++++++ .++++++|+.+.++..+++.+  ++      ||. ... ...++.+++||++++
T Consensus        12 ~e~~~~~~~l~~~~~~~~~~~s~~~-~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~~~l~~~l~~~~   88 (170)
T cd03140          12 WEGAYLAALLNSYEGFEVRTVSPTG-EPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEAPDLAGLVRQAL   88 (170)
T ss_pred             hHHHHHHHHhcccCCcEEEEEeCCC-CeeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCcHHHHHHHHHHH
Confidence            5889999999987 89999999996 599999999999999998873  23      663 322 347899999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++++|++||+|+ ++||++|+|+||+                             |||+|||+|.+ ++||++++++++
T Consensus        89 ~~~~~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~d~al~~i~~l  166 (170)
T cd03140          89 KQGKPVAAICGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PVEFAAEILRAL  166 (170)
T ss_pred             HcCCEEEEEChHH-HHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HHHHHHHHHHHc
Confidence            9999999999999 5999999999997                             89999998755 799999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.80  E-value=1.6e-19  Score=150.96  Aligned_cols=117  Identities=30%  Similarity=0.415  Sum_probs=104.2

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCC-EEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGV-KIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~-~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      |+..++++|++++|+++++|++++.+++++.|+ .+.+|..+++..  ++      ||. ....+..++.+++||+++++
T Consensus        14 e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~~~~~~~~~l~~~~~   92 (165)
T cd03134          14 ELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLRRDPDAVAFVRAFAE   92 (165)
T ss_pred             HHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCC-ChhhhccCHHHHHHHHHHHH
Confidence            678899999999999999999922589999999 999999998764  22      664 45556778999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVE  120 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~  120 (344)
                      ++++|+++|+|+ ++|+++|+|+|++                         |||+|||+|+.++++|+..+++
T Consensus        93 ~~~~i~~ic~G~-~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134          93 AGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             cCCeEEEEchHH-HHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHHHHHHHh
Confidence            999999999999 5999999999998                         8999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.79  E-value=1.1e-19  Score=158.85  Aligned_cols=121  Identities=24%  Similarity=0.305  Sum_probs=103.3

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcce---------------------ecCCCCEEEcCccccccc--cC------CCc
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRV---------------------DACHGVKIVADALVSNCR--DA------CGM   51 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v---------------------~~~~g~~~~~d~~~~~~~--~~------gG~   51 (344)
                      .|++.|+++|+++|++|+++|++++.++                     .++.+..+.++..++|++  +|      ||+
T Consensus        25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~  104 (231)
T cd03147          25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH  104 (231)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence            3889999999999999999999853111                     123445667788888775  23      888


Q ss_pred             hhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc-------CCCCCCC--------------------------
Q 019238           52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK--------------------------   98 (344)
Q Consensus        52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~--------------------------   98 (344)
                      +++.++.+|+.++++|++++++||+|++|||||+ +|+.+       ++++||+                          
T Consensus       105 g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~  183 (231)
T cd03147         105 GTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESI  183 (231)
T ss_pred             chhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCCccH
Confidence            7888899999999999999999999999999996 99988       8999887                          


Q ss_pred             ------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           99 ------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        99 ------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                                              |||+||+++|.++.+|++.+++++
T Consensus       184 e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         184 EDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             HHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                                    799999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.79  E-value=6.6e-19  Score=149.33  Aligned_cols=120  Identities=26%  Similarity=0.320  Sum_probs=102.9

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCc--ceec-------------CCCCEEEcCccccccc--cC------CCchhhhcc
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQL--RVDA-------------CHGVKIVADALVSNCR--DA------CGMPGATNL   57 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~--~v~~-------------~~g~~~~~d~~~~~~~--~~------gG~~~~~~~   57 (344)
                      .|+..|+++|+++|++++++|++++.  ++..             ..|+.+.++..+++++  .+      ||. +...+
T Consensus        13 ~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liv~GG~-~~~~~   91 (180)
T cd03169          13 YEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDALVIPGGR-APEYL   91 (180)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEEEEcCCC-Chhhh
Confidence            37889999999999999999999641  3333             3689999999998865  22      663 44445


Q ss_pred             cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHH
Q 019238           58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPM  112 (344)
Q Consensus        58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~  112 (344)
                      ..++.+++||+++++++++|++||+|+ ++|+++|||+||+                         |||+|||+|+.++.
T Consensus        92 ~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~iiT~~~~~~~~  170 (180)
T cd03169          92 RLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQAWPDHP  170 (180)
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECCEEEecCCchHH
Confidence            678999999999999999999999999 5999999999998                         89999999999999


Q ss_pred             HHHHHHHHHH
Q 019238          113 EFVVALVEQL  122 (344)
Q Consensus       113 ~~~~~lv~~~  122 (344)
                      +|+.++++.+
T Consensus       171 ~f~~~~~~~l  180 (180)
T cd03169         171 AFLREFLKLL  180 (180)
T ss_pred             HHHHHHHHhC
Confidence            9999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.77  E-value=2.6e-18  Score=140.77  Aligned_cols=106  Identities=38%  Similarity=0.559  Sum_probs=95.8

Q ss_pred             eEEEEEecCCcceecCCC---CEEEcCcccccccc--C------CCchhhhcccCC-hHHHHHHHHHhhCCCEEEEEchh
Q 019238           16 DVVVASVEKQLRVDACHG---VKIVADALVSNCRD--A------CGMPGATNLKES-EVLESIVKKQASDGRLYAAICVF   83 (344)
Q Consensus        16 ~~~~vs~~~~~~v~~~~g---~~~~~d~~~~~~~~--~------gG~~~~~~~~~~-~~~~~~l~~~~~~g~~i~aiC~g   83 (344)
                      +|+++|+..++.+++++|   ..+.+|..+++++.  |      ||.++...++.+ +.++++++++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            588999997779999999   99999999999874  3      887778888855 99999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCC---------------------------CC-CEEcCCCCCcHHHHHHHHHHHH
Q 019238           84 LAVALGSWGLLKGLK---------------------------DG-KVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        84 ~~~~La~aGll~g~~---------------------------dg-~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      |. +|+++|+|+||+                           || |+||++|+.++.+|++.+++++
T Consensus        81 ~~-~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   81 PA-VLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             HH-HHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             cc-hhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            95 999999999999                           89 9999999999999999999987

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.75  E-value=4.1e-18  Score=149.15  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=103.4

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCccee-------------c---CCCCEEEcCccccccc--------cC------CC
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVD-------------A---CHGVKIVADALVSNCR--------DA------CG   50 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~-------------~---~~g~~~~~d~~~~~~~--------~~------gG   50 (344)
                      .|++.|+++|+++||+++++|++|+....             .   ..+..+..+..++++.        +|      ||
T Consensus        26 ~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG  105 (232)
T cd03148          26 VEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGG  105 (232)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCC
Confidence            38899999999999999999998642211             0   2344577888888772        33      88


Q ss_pred             chhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC------CCCCC--------------------------
Q 019238           51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL------LKGLK--------------------------   98 (344)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl------l~g~~--------------------------   98 (344)
                      ++++.++++|+.+.+++++++++||+|++|||||+ +|..+++      ++||+                          
T Consensus       106 ~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~  184 (232)
T cd03148         106 HGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLTWL  184 (232)
T ss_pred             CCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCccccc
Confidence            88899999999999999999999999999999996 9999999      88876                          


Q ss_pred             -----------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                                             |||+||+++|.|+..++..+++.+
T Consensus       185 le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         185 VGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             HHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                                   899999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PRK04155 chaperone protein HchA; Provisional

Probab=99.74  E-value=3.3e-18  Score=153.56  Aligned_cols=122  Identities=21%  Similarity=0.244  Sum_probs=99.3

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecC-----------------CCCEEEcCcccccc--------ccC------C
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDAC-----------------HGVKIVADALVSNC--------RDA------C   49 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~-----------------~g~~~~~d~~~~~~--------~~~------g   49 (344)
                      +|++.|+++|+++||+|+++|++|+ ++...                 .+-.+..+..++++        ++|      |
T Consensus        77 ~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPG  155 (287)
T PRK04155         77 VETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPG  155 (287)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECC
Confidence            4889999999999999999999864 33211                 11222333333322        233      8


Q ss_pred             CchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC------CCCCCC-------------------------
Q 019238           50 GMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK-------------------------   98 (344)
Q Consensus        50 G~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~-------------------------   98 (344)
                      |++++..+++++.++++|+++++++|+|++|||||+ +|+.+|      +++||+                         
T Consensus       156 G~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~  234 (287)
T PRK04155        156 GHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWL  234 (287)
T ss_pred             CCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccch
Confidence            888889999999999999999999999999999996 999999      999987                         


Q ss_pred             -----------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                                             |||+||++||.++.+|++.+++.+..
T Consensus       235 ~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~  283 (287)
T PRK04155        235 FGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA  283 (287)
T ss_pred             HHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence                                   78999999999999999999999863

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.74  E-value=4.1e-18  Score=148.82  Aligned_cols=120  Identities=25%  Similarity=0.328  Sum_probs=101.4

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceec--------------------CCCCEEEcCccccccc--cC------CCch
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDA--------------------CHGVKIVADALVSNCR--DA------CGMP   52 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~--------------------~~g~~~~~d~~~~~~~--~~------gG~~   52 (344)
                      .|++.|+++|+++|++|+++|++++ ++..                    ..|..+.++..+++++  ++      ||..
T Consensus        23 ~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~  101 (221)
T cd03141          23 EELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHG  101 (221)
T ss_pred             HHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCcc
Confidence            4889999999999999999999864 3211                    2344577888888876  23      7754


Q ss_pred             hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC------CCCCCC----------------------------
Q 019238           53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK----------------------------   98 (344)
Q Consensus        53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~----------------------------   98 (344)
                      ....+.+++.+++||+++++++++|++||+|+ ++|+++|      +|+||+                            
T Consensus       102 ~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~l~~  180 (221)
T cd03141         102 PMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKE  180 (221)
T ss_pred             cccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHHHHH
Confidence            55668899999999999999999999999999 5999999      799986                            


Q ss_pred             -----------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           99 -----------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        99 -----------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                                       |+|+||++|+.++.+|++++++.+
T Consensus       181 ~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         181 LGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             cCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence                             789999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.72  E-value=1.2e-16  Score=158.19  Aligned_cols=151  Identities=12%  Similarity=0.129  Sum_probs=122.7

Q ss_pred             ChhHHHHHhhccccc-ccC------CCc-ceeeeccceeee-----cCCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeE
Q 019238          124 GKGKADEVSGARVMR-ANH------GDE-FTIAEFNPVQWT-----FDNSPQILVPIANGSEEMEAVIIIDILRRAKANV  190 (344)
Q Consensus       124 g~~~a~~v~~~~~~~-~~~------~~~-~~l~~~~~~~~~-----~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v  190 (344)
                      ..+.++.|++.+..+ +..      ... ..+.+.+.+++.     ....+||+||++||++..|+..+.++|..+|+++
T Consensus       548 d~~l~~~va~~l~~~~~~~~~~~~~~~~~~~~~~s~als~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V  627 (752)
T PRK11249        548 DLTLAQAVAENLGIPLTDEQLNITPPPDVNGLKKDPALSLYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVHA  627 (752)
T ss_pred             HHHHHHHHHHHhCCCCCCccccccCCCCcCCCCCCcchhccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCEE
Confidence            445677777777663 222      001 113333444433     1257999999999999999999999999999999


Q ss_pred             EEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          191 VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       191 ~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      .++++++| +|.++.|..+.+|.++++..+..||+|+||||......+..++.+++||+++++++|+|+++|+|+. +|+
T Consensus       628 ~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~-LLa  705 (752)
T PRK11249        628 KLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARK-LKA  705 (752)
T ss_pred             EEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHH-HHH
Confidence            99999997 9999999999999999998777899999999965567788899999999999999999999999975 499


Q ss_pred             hcCCCC
Q 019238          271 PHGLLK  276 (344)
Q Consensus       271 ~aGlL~  276 (344)
                      ++||.+
T Consensus       706 aAGL~~  711 (752)
T PRK11249        706 ALKLPD  711 (752)
T ss_pred             hcCCCC
Confidence            999965

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.69  E-value=2.8e-16  Score=134.19  Aligned_cols=125  Identities=35%  Similarity=0.497  Sum_probs=108.6

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCC-cceecCCC-CEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHH
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQ-LRVDACHG-VKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ   70 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~-~~v~~~~g-~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~   70 (344)
                      +|++.|+++|++++++++++++.++ ..+.+..| ..+.++..+++++  ++      ||..+...++.++.+++|++++
T Consensus        16 ~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~   95 (188)
T COG0693          16 LELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDF   95 (188)
T ss_pred             hhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHH
Confidence            5899999999999999999999963 35555555 6777878888886  44      7756677777779999999999


Q ss_pred             hhCCCEEEEEchhHHHHHHHcC-CCCCCC----------------------------------CCC-EEcCCCCCcHHHH
Q 019238           71 ASDGRLYAAICVFLAVALGSWG-LLKGLK----------------------------------DGK-VVTTRGPGTPMEF  114 (344)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aG-ll~g~~----------------------------------dg~-~iT~~g~~~~~~~  114 (344)
                      +++|++|++|||||+ +|+++| +++||+                                  ||| ++|+.++.+..++
T Consensus        96 ~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt~~~p~~~~~~  174 (188)
T COG0693          96 YANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAF  174 (188)
T ss_pred             HHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEEcCCcccHHHH
Confidence            999999999999995 999999 999998                                  677 9999999999999


Q ss_pred             HHHHHHHHcChh
Q 019238          115 VVALVEQLYGKG  126 (344)
Q Consensus       115 ~~~lv~~~~g~~  126 (344)
                      +..+++++.+..
T Consensus       175 ~~~~~~~l~~~~  186 (188)
T COG0693         175 ALELLKALGGAE  186 (188)
T ss_pred             HHHHHHHHhccc
Confidence            999999988753

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.61  E-value=5.2e-15  Score=120.46  Aligned_cols=115  Identities=21%  Similarity=0.153  Sum_probs=95.3

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..|+++|++++++++++|+++ +++++++|+.+.++..+++.+.  +      ||......+..++.+.+||++++++
T Consensus        16 e~~~~~~~~~~a~~~v~vvs~~~-~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~   94 (142)
T cd03132          16 ELSALKAALKAAGANVKVVAPTL-GGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKH   94 (142)
T ss_pred             HHHHHHHHHHHCCCEEEEEecCc-CceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhc
Confidence            67889999999999999999996 5999999999999999987652  2      6654445557889999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++|+++|+|+ ++|+++|+|-  +|-+++|++++...  +...+|+++
T Consensus        95 ~~~I~aic~G~-~~La~aGll~--~~~gv~~~~~~~~~--~~~~~~~~~  138 (142)
T cd03132          95 GKPIGAVGEGS-DLLEAAGIPL--EDPGVVTADDVKDV--FTDRFIDAL  138 (142)
T ss_pred             CCeEEEcCchH-HHHHHcCCCC--CCCcEEEecCcchH--HHHHHHHHH
Confidence            99999999999 5999999972  25799999866543  456666654

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.52  E-value=3e-14  Score=122.54  Aligned_cols=96  Identities=24%  Similarity=0.300  Sum_probs=74.7

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCc----------ceecCCCCEEEcC-------ccccccc--cC------CCchhhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCR--DA------CGMPGAT   55 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~----------~v~~~~g~~~~~d-------~~~~~~~--~~------gG~~~~~   55 (344)
                      .|++.|+++|+|+|++++++|++++.          .+....++.+.++       ..+++++  ++      ||+.++.
T Consensus        17 ~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~   96 (213)
T cd03133          17 HEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAK   96 (213)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhh
Confidence            38899999999999999999997531          3444566666665       5677664  23      7765544


Q ss_pred             cc----------cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 019238           56 NL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK   98 (344)
Q Consensus        56 ~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~   98 (344)
                      .+          +.++.+++++++|+++||+|++||+||+ +|++++. +||+
T Consensus        97 ~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~  147 (213)
T cd03133          97 NLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVE  147 (213)
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCe
Confidence            43          3589999999999999999999999996 9999765 7765

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.47  E-value=1.5e-13  Score=118.99  Aligned_cols=96  Identities=22%  Similarity=0.265  Sum_probs=72.4

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCc----------ceecCCCCEEEcC-------ccccccc--cC------CCchhhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCR--DA------CGMPGAT   55 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~----------~v~~~~g~~~~~d-------~~~~~~~--~~------gG~~~~~   55 (344)
                      .|++.|+++|+++|++++++|++++.          ++....++.+.++       ..+++++  ++      ||++++.
T Consensus        20 ~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~   99 (217)
T PRK11780         20 HEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAK   99 (217)
T ss_pred             hHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhh
Confidence            48899999999999999999998642          2333445545544       4566654  23      7765543


Q ss_pred             ----------cccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 019238           56 ----------NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK   98 (344)
Q Consensus        56 ----------~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~   98 (344)
                                .++.|+.+++++++|+++||+|++|||||+ +|+.+.. +||+
T Consensus       100 ~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~  150 (217)
T PRK11780        100 NLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVK  150 (217)
T ss_pred             hhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcE
Confidence                      345699999999999999999999999996 9998732 6665

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.16  E-value=2.4e-10  Score=99.52  Aligned_cols=95  Identities=25%  Similarity=0.346  Sum_probs=73.6

Q ss_pred             CeEEEEeCCCcc-hhHHHHHHHHHH-hcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH--
Q 019238          161 PQILVPIANGSE-EMEAVIIIDILR-RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--  236 (344)
Q Consensus       161 ~~v~ill~~g~~-~~e~~~~~~~l~-~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~--  236 (344)
                      |||+|+.++|.. +.|+   .+.|+ .+|+++..+..+.                  .+.  ++||+|+||||....+  
T Consensus         1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~------------------~~l--~~~D~lvipGG~~~~d~l   57 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKE------------------TDL--DGVDAVVLPGGFSYGDYL   57 (219)
T ss_pred             CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCc------------------CCC--CCCCEEEECCCCchhhhh
Confidence            589999999987 5554   67777 7898887765532                  122  5799999999954222  


Q ss_pred             ---hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCe
Q 019238          237 ---AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK  279 (344)
Q Consensus       237 ---~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~  279 (344)
                         ....++.+.+||+++++++++|++||+|.. +|+++|||+|+-
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~q-lLa~~GLL~g~l  102 (219)
T PRK03619         58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQ-ILTEAGLLPGAL  102 (219)
T ss_pred             ccchhhhchHHHHHHHHHHHCCCEEEEECHHHH-HHHHcCCCCCeE
Confidence               223457899999999999999999999975 599999999853

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.11  E-value=3.5e-10  Score=99.93  Aligned_cols=128  Identities=20%  Similarity=0.146  Sum_probs=88.2

Q ss_pred             EEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh--
Q 019238          163 ILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--  239 (344)
Q Consensus       163 v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~--  239 (344)
                      |+|+.+||. .+.|   ..+.|+++|+++.+++.+.  .+..             .....+||.|++|||....+.+.  
T Consensus         1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~--~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~   62 (238)
T cd01740           1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHND--LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG   62 (238)
T ss_pred             CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccC--Cccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence            589999998 5555   6788888999998887754  1111             11226799999999964222221  


Q ss_pred             ---cCHH-HHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc-CCcCCCcEEEeCCeEeCC
Q 019238          240 ---KSKK-LVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN-QSEIENRVVVDGNLVTSR  310 (344)
Q Consensus       240 ---~~~~-l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~-~~~~~~~~v~dg~liT~~  310 (344)
                         .... +.++|+++.+++++|++||.|..+ |+++|+|.|+. +.++........ ..+.+..++.|++++|+.
T Consensus        63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Ql-L~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~  136 (238)
T cd01740          63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQI-LVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             cccccChhHHHHHHHHHhCCCeEEEECcHHHH-HHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence               1222 889999999999999999999866 99999999976 555543332221 123444566677888875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.02  E-value=2.1e-09  Score=95.64  Aligned_cols=99  Identities=24%  Similarity=0.349  Sum_probs=73.1

Q ss_pred             CCeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      ++||+|+.++|+. +.|   +.+.|+++|+++.+++....            .+ ...+.  .+||+|++|||....+.+
T Consensus         3 ~~kvaVl~~pG~n~d~e---~~~Al~~aG~~v~~v~~~~~------------~~-~~~~l--~~~DgLvipGGfs~gD~l   64 (261)
T PRK01175          3 SIRVAVLRMEGTNCEDE---TVKAFRRLGVEPEYVHINDL------------AA-ERKSV--SDYDCLVIPGGFSAGDYI   64 (261)
T ss_pred             CCEEEEEeCCCCCCHHH---HHHHHHHCCCcEEEEeeccc------------cc-cccch--hhCCEEEECCCCCccccc
Confidence            5799999999996 544   46889899999988876531            00 11122  679999999995322222


Q ss_pred             hc--------CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCC
Q 019238          239 AK--------SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG  277 (344)
Q Consensus       239 ~~--------~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g  277 (344)
                      ..        .+.+.+.|+++.+++|+|.+||+|..+ |+++|+|.|
T Consensus        65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Ql-La~~GlLpg  110 (261)
T PRK01175         65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQV-LVELGLLPG  110 (261)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHH-HHHCCCCCC
Confidence            11        123458899999999999999999866 999999987

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.01  E-value=2.7e-09  Score=106.50  Aligned_cols=102  Identities=11%  Similarity=0.032  Sum_probs=87.9

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..+.++|+++|.++.++|+++ .+|+++.|..+.+|.++++.+.  +      ||......+..++.++.||++++++
T Consensus       612 ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykH  690 (752)
T PRK11249        612 DLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKH  690 (752)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHc
Confidence            56789999999999999999996 5999999999999999987753  2      7755677788899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCC
Q 019238           74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTR  106 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~  106 (344)
                      +|+|+++|+|+ ++|+++||.+ ..|..++++.
T Consensus       691 gK~IAAiCaG~-~LLaaAGL~~-~~~~g~~~~~  721 (752)
T PRK11249        691 LKPIALAGDAR-KLKAALKLPD-QGEEGLVEAD  721 (752)
T ss_pred             CCEEEEeCccH-HHHHhcCCCC-CCCCeEEecC
Confidence            99999999999 5999999954 2346777776

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.92  E-value=9.5e-09  Score=90.14  Aligned_cols=94  Identities=24%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             CeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH---
Q 019238          161 PQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ---  236 (344)
Q Consensus       161 ~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~---  236 (344)
                      |||+|+.++|.. +.|+   .+.|+.+|+++.++.....                  ..  +++|+|++|||....+   
T Consensus         1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~   57 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR   57 (227)
T ss_pred             CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence            589999999885 5665   4788889988887754321                  12  5799999999953222   


Q ss_pred             --hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCC
Q 019238          237 --AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK  278 (344)
Q Consensus       237 --~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~  278 (344)
                        .+..+..++++|+++.+++++|.+||+|..+ |+++|+|.|.
T Consensus        58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Ql-La~~GlL~G~  100 (227)
T TIGR01737        58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQI-LVEAGLLPGA  100 (227)
T ss_pred             ccchhcchHHHHHHHHHHHcCCEEEEECHHHHH-HHHcCCCCCc
Confidence              1234567889999999999999999999754 9999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.82  E-value=4e-08  Score=74.86  Aligned_cols=91  Identities=30%  Similarity=0.472  Sum_probs=74.9

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~  242 (344)
                      |++++++++...++..+.+.|+.+++++++++...+ ...+             .....+||+|++|||.........++
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence            478899999999999999999999999999999885 4333             12337899999999865443333478


Q ss_pred             HHHHHHHHHHhcCCcEEEEcchhhh
Q 019238          243 KLVNMLKKQKESNRPYGAICASPAL  267 (344)
Q Consensus       243 ~l~~~l~~~~~~~k~I~aic~G~~~  267 (344)
                      .++++++++..++++++++|.|+.+
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g~~~   91 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLGAQL   91 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECchhHh
Confidence            9999999999999999999999754

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.68  E-value=1.1e-07  Score=81.81  Aligned_cols=92  Identities=21%  Similarity=0.253  Sum_probs=73.0

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhhh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFA  239 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l~  239 (344)
                      |||+|++.+++....+..+.+.|+..|+++++...+.                 .++.  .+||+|++|||.... ..+.
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~-----------------~~~l--~~~d~iii~GG~~~~~~~~~   61 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR-----------------PGDL--PDCDALIIPGGESTTIGRLM   61 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC-----------------hHHh--ccCCEEEECCCcHHHHHHHH
Confidence            5899999999999999999999999998877666542                 1233  579999999995432 1233


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+..+.++|+++.+++++|.+||.|..+ |+.+
T Consensus        62 ~~~~~~~~i~~~~~~~~pilGIC~G~Ql-l~~~   93 (200)
T PRK13527         62 KREGILDEIKEKIEEGLPILGTCAGLIL-LAKE   93 (200)
T ss_pred             hhccHHHHHHHHHHCCCeEEEECHHHHH-HHhh
Confidence            4556899999999999999999999866 7775

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.67  E-value=1.8e-07  Score=79.51  Aligned_cols=95  Identities=24%  Similarity=0.384  Sum_probs=72.4

Q ss_pred             CCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-
Q 019238          160 SPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-  237 (344)
Q Consensus       160 ~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-  237 (344)
                      ++||+|+.+||. ++.|..   ..|+++|++...+..+..               .+.    .+||+|++|||+.--+- 
T Consensus         2 ~~kvaVi~fpGtN~d~d~~---~A~~~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL   59 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMA---AAFERAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL   59 (231)
T ss_pred             CceEEEEEcCCcCchHHHH---HHHHHcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence            589999999998 666654   455578888776665442               111    17999999999742222 


Q ss_pred             ----hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCC
Q 019238          238 ----FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG  277 (344)
Q Consensus       238 ----l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g  277 (344)
                          +..-..+++-++++.++++++.+||+|-.+ |.++|||.|
T Consensus        60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQi-L~e~gLlPG  102 (231)
T COG0047          60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQI-LSEAGLLPG  102 (231)
T ss_pred             CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHH-HHHcCcCCc
Confidence                233367899999999999999999999877 889999999

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.59  E-value=1.8e-07  Score=77.96  Aligned_cols=85  Identities=18%  Similarity=0.285  Sum_probs=62.3

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l  238 (344)
                      .+||+||..+|....    -...|++.|+++.++..                   .++.  .+||.|++|||.... ..+
T Consensus         2 ~~~igVLalqG~~~E----h~~al~~lG~~v~~v~~-------------------~~~l--~~~D~LILPGG~~t~~~~l   56 (179)
T PRK13526          2 TQKVGVLAIQGGYQK----HADMFKSLGVEVKLVKF-------------------NNDF--DSIDRLVIPGGESTTLLNL   56 (179)
T ss_pred             CcEEEEEECCccHHH----HHHHHHHcCCcEEEECC-------------------HHHH--hCCCEEEECCChHHHHHHH
Confidence            378999999987654    55677778776544331                   2333  679999999994322 145


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .++..+.+.|+++.+ +|+|.+||.|+.+ |++
T Consensus        57 l~~~~l~~~Ik~~~~-~kpilGICaG~ql-L~~   87 (179)
T PRK13526         57 LNKHQIFDKLYNFCS-SKPVFGTCAGSII-LSK   87 (179)
T ss_pred             hhhcCcHHHHHHHHc-CCcEEEEcHHHHH-HHc
Confidence            566679999999885 7899999999755 887

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.58  E-value=2.9e-07  Score=66.86  Aligned_cols=90  Identities=30%  Similarity=0.462  Sum_probs=71.4

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~  242 (344)
                      |+++.++++...++..+.+.+++.++++.+++.... ....             .....++|++++|||.........+.
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~   66 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE   66 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence            467888888888889999999999999999998874 3222             12337899999999965433333478


Q ss_pred             HHHHHHHHHHhcCCcEEEEcchhh
Q 019238          243 KLVNMLKKQKESNRPYGAICASPA  266 (344)
Q Consensus       243 ~l~~~l~~~~~~~k~I~aic~G~~  266 (344)
                      .+++++.+++.++++|+++|.|+.
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~~g~~   90 (92)
T cd03128          67 ALLALLREAAAAGKPVLGICLGAQ   90 (92)
T ss_pred             HHHHHHHHHHHcCCEEEEEecccc
Confidence            999999999999999999999963

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.48  E-value=4e-07  Score=77.15  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhhhc
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFAK  240 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l~~  240 (344)
                      ||+|+..+|....    ..+.|++.|+++.+++..                   ++.  ++||+|+||||.... ..+..
T Consensus         1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~-------------------~~l--~~~d~liipGG~~~~~~~l~~   55 (184)
T TIGR03800         1 KIGVLALQGAVRE----HARALEALGVEGVEVKRP-------------------EQL--DEIDGLIIPGGESTTLSRLLD   55 (184)
T ss_pred             CEEEEEccCCHHH----HHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCHHHHHHHHH
Confidence            6899999987554    458899999888777542                   122  579999999995432 23445


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +..+.++|+++++++++|.++|.|..+ |++.
T Consensus        56 ~~~l~~~i~~~~~~g~pilGIC~G~ql-L~~~   86 (184)
T TIGR03800        56 KYGMFEPLRNFILSGLPVFGTCAGLIM-LAKE   86 (184)
T ss_pred             hccHHHHHHHHHHcCCcEEEECHHHHH-HHhh
Confidence            567899999999999999999999765 8876

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.39  E-value=7.7e-06  Score=65.40  Aligned_cols=162  Identities=21%  Similarity=0.316  Sum_probs=101.8

Q ss_pred             CCeEEEEe-----CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee---cccee--------eee-------ccccc
Q 019238          160 SPQILVPI-----ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA---SCQVK--------LVA-------DMLID  216 (344)
Q Consensus       160 ~~~v~ill-----~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~---~~g~~--------v~~-------~~~~~  216 (344)
                      +|||++++     |||....|-....-.+.+.|.++..+.++.. ...-   -.|-.        +..       -..+.
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~   79 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-QVHVINHLTGEAMPETRNVLVESARIARGEIRPLA   79 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-hhhhhhhccccccchhhhHHHHHHHHhhccccchh
Confidence            47888886     5788888888888889999999999988763 2111   11111        110       02345


Q ss_pred             cccCCCccEEEEcCCccchHhh----------hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh-cCCCCCCeeeeC--
Q 019238          217 EAAKLSYDLIVLPGGLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEP-HGLLKGKKATAF--  283 (344)
Q Consensus       217 ~~~~~~~D~liipGG~~~~~~l----------~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~-aGlL~g~~~T~~--  283 (344)
                      ..++++||++++|||++....+          .-++.+..+.+.+++.||+++-+|-++.+ |.+ -|  .+.+.|..  
T Consensus        80 ~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m-~pki~g--~~~~~TIGnD  156 (217)
T COG3155          80 QADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAM-LPKIFG--FPLRLTIGND  156 (217)
T ss_pred             hcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHH-HHHHcC--CceeEEecCC
Confidence            5567899999999998755443          34688999999999999999999999866 543 22  23344543  


Q ss_pred             cCchhhhcc---C--Cc-CCCcEEE-eCCeEeCCCcccHHHHHHHHHHHhcCH
Q 019238          284 PAMCNKLSN---Q--SE-IENRVVV-DGNLVTSRGPGTSMEFALAIVEKFFGR  329 (344)
Q Consensus       284 ~~~~~~~~~---~--~~-~~~~~v~-dg~liT~~g~~~~~~~~~~li~~l~g~  329 (344)
                      +.-.+.++.   .  .. .+..++. +.+++|.-    +.-++..|-+.--|-
T Consensus       157 ~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~IaeAAsGI  205 (217)
T COG3155         157 IDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAEAASGI  205 (217)
T ss_pred             ccHHHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHHHHhhH
Confidence            333444433   1  12 2333333 35677632    344555555555444

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.38  E-value=1.2e-06  Score=77.75  Aligned_cols=99  Identities=22%  Similarity=0.299  Sum_probs=67.4

Q ss_pred             CeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh-
Q 019238          161 PQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF-  238 (344)
Q Consensus       161 ~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l-  238 (344)
                      +||+|+.+||. .+.|   ....|+.+|++.+.+..+.  ..             -.+....+||+|++|||+..-+.+ 
T Consensus         2 pkV~Vl~~pGtNce~e---~~~A~~~aG~~~~~v~~~d--l~-------------~~~~~l~~~~~lvipGGFS~gD~l~   63 (259)
T PF13507_consen    2 PKVAVLRFPGTNCERE---TAAAFENAGFEPEIVHIND--LL-------------SGESDLDDFDGLVIPGGFSYGDYLR   63 (259)
T ss_dssp             -EEEEEE-TTEEEHHH---HHHHHHCTT-EEEEEECCH--HH-------------TTS--GCC-SEEEE-EE-GGGGTTS
T ss_pred             CEEEEEECCCCCCHHH---HHHHHHHcCCCceEEEEEe--cc-------------cccCchhhCcEEEECCccCccccch
Confidence            69999999999 4544   4577888999998876543  00             011123789999999997433322 


Q ss_pred             ---------hcCHHHHHHHHHHHhc-CCcEEEEcchhhhhhhhcCCCCCC
Q 019238          239 ---------AKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLKGK  278 (344)
Q Consensus       239 ---------~~~~~l~~~l~~~~~~-~k~I~aic~G~~~lLa~aGlL~g~  278 (344)
                               ..++.+++.|++|+++ +++|.+||+|-.+ |.++|||.+.
T Consensus        64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQi-L~~~Gllp~~  112 (259)
T PF13507_consen   64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQI-LVELGLLPGG  112 (259)
T ss_dssp             TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHH-HCCCCCSTT-
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHH-HHHhCcCCCc
Confidence                     2245678999999998 9999999999766 9999999983

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.30  E-value=3.3e-06  Score=72.51  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--hHhhhcCHHHHHHHHHHHh
Q 019238          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKE  253 (344)
Q Consensus       176 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~~~l~~~~~l~~~l~~~~~  253 (344)
                      +..-.+.|++.|+++.++++..+                 ++.  +++|+||+|||...  +..+.++..+.+.|+++.+
T Consensus        13 y~e~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~   73 (198)
T cd03130          13 YPENLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAE   73 (198)
T ss_pred             cHHHHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHH
Confidence            34467888899999988876431                 222  35999999999543  3456677789999999999


Q ss_pred             cCCcEEEEcchhhhhhhhc
Q 019238          254 SNRPYGAICASPALVLEPH  272 (344)
Q Consensus       254 ~~k~I~aic~G~~~lLa~a  272 (344)
                      ++++|.+||.|.++ |++.
T Consensus        74 ~g~pilgICgG~ql-L~~~   91 (198)
T cd03130          74 SGGPIYAECGGLMY-LGES   91 (198)
T ss_pred             cCCCEEEEcccHHH-HHHH
Confidence            99999999999765 7653

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.20  E-value=7e-06  Score=69.93  Aligned_cols=86  Identities=22%  Similarity=0.240  Sum_probs=63.3

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l  238 (344)
                      +|+|+|+...|-...-    .+.|+..|.++.+++..                   ++.  .+||.|++|||.... +.+
T Consensus         1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~   55 (189)
T PRK13525          1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL   55 (189)
T ss_pred             CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence            4789999998765533    46678888887665421                   223  579999999995322 233


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+..+.++++++++++++|.+||.|..+ |+.
T Consensus        56 ~~~~~~~~~i~~~~~~g~PilGIC~G~Ql-L~~   87 (189)
T PRK13525         56 LRDFGLLEPLREFIASGLPVFGTCAGMIL-LAK   87 (189)
T ss_pred             HHhccHHHHHHHHHHCCCeEEEECHHHHH-HHh
Confidence            45566789999999999999999999866 776

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=98.17  E-value=5.2e-06  Score=68.24  Aligned_cols=85  Identities=24%  Similarity=0.266  Sum_probs=61.8

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcC-CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc-cchHhh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAK-ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL-GGAQAF  238 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~-~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~-~~~~~l  238 (344)
                      |||+||.+.|-....+    +.+++++ .++.                   .-+..++.  ++.|+||||||- .....+
T Consensus         1 m~IGVLalQG~v~EH~----~~l~~~~~~e~~-------------------~Vk~~~dL--~~~d~LIiPGGESTTi~rL   55 (194)
T COG0311           1 MKIGVLALQGAVEEHL----EALEKAGGAEVV-------------------EVKRPEDL--EGVDGLIIPGGESTTIGRL   55 (194)
T ss_pred             CeEEEEEecccHHHHH----HHHHhhcCCceE-------------------EEcCHHHh--ccCcEEEecCccHHHHHHH
Confidence            6899999998766554    4455553 2221                   11233555  678999999994 345567


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .+...+.+-|+++..+|+|+.+.|+|. ++||+
T Consensus        56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLak   87 (194)
T COG0311          56 LKRYGLLEPLREFIADGLPVFGTCAGL-ILLAK   87 (194)
T ss_pred             HHHcCcHHHHHHHHHcCCceEEechhh-hhhhh
Confidence            777889999999999999999999994 66885

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.08  E-value=1.6e-05  Score=70.05  Aligned_cols=87  Identities=23%  Similarity=0.286  Sum_probs=63.6

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~l  238 (344)
                      +|||+||..+|....-    .+.|++.|+++.+++..                   +++  .++|.||+|||... +..+
T Consensus         1 ~m~igVLa~qG~~~e~----~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L   55 (248)
T PLN02832          1 MMAIGVLALQGSFNEH----IAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL   55 (248)
T ss_pred             CcEEEEEeCCCchHHH----HHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence            4799999999865533    57788888776554431                   333  57899999998642 3344


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .....+.+.|+++.+++++|.++|.|..+ |++.
T Consensus        56 ~~~~gl~~~I~~~v~~g~PvLGiC~Gmql-La~~   88 (248)
T PLN02832         56 AERHNLFPALREFVKSGKPVWGTCAGLIF-LAER   88 (248)
T ss_pred             HhhcchHHHHHHHHHcCCCEEEEChhHHH-HHHH
Confidence            44446889999998999999999999654 7654

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.08  E-value=1.8e-05  Score=68.12  Aligned_cols=87  Identities=28%  Similarity=0.276  Sum_probs=63.9

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      |||+|+=+.+-+.   ....+.|+..|+++.+++.                   .++.  .+||+|++|||......+..
T Consensus         1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~   56 (200)
T PRK13143          1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN   56 (200)
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence            5777777764443   5568889999998877631                   1233  57999999996322333445


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+.+.++|+++.+++++|.+||.|..+ |+++
T Consensus        57 ~~~~~~~i~~~~~~~~PilgIC~G~q~-l~~~   87 (200)
T PRK13143         57 LSPLRDVILEAARSGKPFLGICLGMQL-LFES   87 (200)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHHH-Hhhh
Confidence            567899999999999999999999876 8864

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.06  E-value=1.6e-05  Score=69.33  Aligned_cols=75  Identities=21%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             HHHHH-hCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-----cccCChHHHHHHHHHhhCCCEE
Q 019238            7 IDVLR-RSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY   77 (344)
Q Consensus         7 ~~~l~-~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i   77 (344)
                      ++.|+ ++|+++.++..+. .              .+++.+-.   ||....+     ....++.+.+||++++++|+++
T Consensus        18 ~~a~~~~~G~~~~~v~~~~-~--------------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~i   82 (219)
T PRK03619         18 ARALRDLLGAEPEYVWHKE-T--------------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPV   82 (219)
T ss_pred             HHHHHhcCCCeEEEEecCc-C--------------CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEE
Confidence            55677 7899888887642 1              12222211   5432211     2234578999999999999999


Q ss_pred             EEEchhHHHHHHHcCCCCCC
Q 019238           78 AAICVFLAVALGSWGLLKGL   97 (344)
Q Consensus        78 ~aiC~g~~~~La~aGll~g~   97 (344)
                      ++||.|+ ++|+++|||+|+
T Consensus        83 lgIC~G~-qlLa~~GLL~g~  101 (219)
T PRK03619         83 LGICNGF-QILTEAGLLPGA  101 (219)
T ss_pred             EEECHHH-HHHHHcCCCCCe
Confidence            9999999 599999999753

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.05  E-value=2.2e-05  Score=67.20  Aligned_cols=86  Identities=22%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc--
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--  240 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~--  240 (344)
                      |+++.|+..  ..+..+...+...|++++++++..+                     +.++|+|++|||......+..  
T Consensus         1 ~~~~~y~~~--gN~~~l~~~~~~~G~~~~~~~~~~~---------------------~~~~d~lilpGg~~~~~~~~~~~   57 (194)
T cd01750           1 IAVIRYPDI--SNFTDLDPLAREPGVDVRYVEVPEG---------------------LGDADLIILPGSKDTIQDLAWLR   57 (194)
T ss_pred             CEeecCCCc--cCHHHHHHHHhcCCceEEEEeCCCC---------------------CCCCCEEEECCCcchHHHHHHHH
Confidence            356667643  3335566777788888888876541                     257899999999633333322  


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +..+.+.|+++.+++++|.+||.|..+ |++.
T Consensus        58 ~~~~~~~i~~~~~~g~pvlgiC~G~ql-L~~~   88 (194)
T cd01750          58 KRGLAEAIKNYARAGGPVLGICGGYQM-LGKY   88 (194)
T ss_pred             HcCHHHHHHHHHHCCCcEEEECHHHHH-hhhh
Confidence            456889999999999999999999766 7654

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.04  E-value=2.5e-05  Score=75.65  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--hHh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQA  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~~~  237 (344)
                      ..+|+|.-.+=|+. -+..-++.|+..|.++.++++-..                 ++.  ++||+|++|||...  ...
T Consensus       245 ~~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~  304 (451)
T PRK01077        245 GVRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAE  304 (451)
T ss_pred             CceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHH
Confidence            36999998884433 333345778888888888776321                 122  57899999999643  345


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      +..+..+.+.|+++.++|++|.++|.|..+ |++
T Consensus       305 l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~-L~~  337 (451)
T PRK01077        305 LAANTSMRASIRAAAAAGKPIYAECGGLMY-LGE  337 (451)
T ss_pred             HhhCchhHHHHHHHHHcCCCEEEEcHHHHH-HHh
Confidence            677888999999999999999999999754 764

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=98.04  E-value=2.1e-05  Score=69.55  Aligned_cols=82  Identities=20%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhccc-----CChH-HHHHHHHHhhCCCE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLK-----ESEV-LESIVKKQASDGRL   76 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~-----~~~~-~~~~l~~~~~~g~~   76 (344)
                      .++.|+++|+++.+++.+.  .+..        ...+++.+-.   ||+...+.++     .... +.++|+++.+++++
T Consensus        15 ~~~al~~aG~~v~~v~~~~--~~~~--------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~p   84 (238)
T cd01740          15 MAYAFELAGFEAEDVWHND--LLAG--------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGL   84 (238)
T ss_pred             HHHHHHHcCCCEEEEeccC--Cccc--------cCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCe
Confidence            4677899999999998863  2221        1123333221   5533222221     1222 88999999999999


Q ss_pred             EEEEchhHHHHHHHcCCCCCCC
Q 019238           77 YAAICVFLAVALGSWGLLKGLK   98 (344)
Q Consensus        77 i~aiC~g~~~~La~aGll~g~~   98 (344)
                      +.+||.|+. +|+++|+|.|+.
T Consensus        85 vlGIC~G~Q-lL~~~gll~g~~  105 (238)
T cd01740          85 VLGICNGFQ-ILVELGLLPGAL  105 (238)
T ss_pred             EEEECcHHH-HHHHcCCCcccc
Confidence            999999995 999999998765

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK08250 glutamine amidotransferase; Provisional

Probab=97.98  E-value=6e-05  Score=66.48  Aligned_cols=94  Identities=14%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-hh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-FA  239 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-l~  239 (344)
                      |||.|+....+...+..  .+.++..|+++++.....+.+        + +    .+.  .+||+|||.||..+... ..
T Consensus         1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g~~--------~-p----~~~--~~~d~vii~GGp~~~~~~~~   63 (235)
T PRK08250          1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAGEA--------L-P----ENA--DGFDLLIVMGGPQSPRTTRE   63 (235)
T ss_pred             CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCCCC--------C-C----CCc--cccCEEEECCCCCChhhccc
Confidence            57888888888777654  567788898887765543211        1 1    122  67999999999543221 11


Q ss_pred             cC-----HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KS-----KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~-----~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +.     ....+||+++++++++|.+||.|..+ |+.+
T Consensus        64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Ql-la~a  100 (235)
T PRK08250         64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQL-IGEA  100 (235)
T ss_pred             cccccchHHHHHHHHHHHHcCCCEEEEChhHHH-HHHH
Confidence            12     35689999999999999999999887 7654

>PRK07053 glutamine amidotransferase; Provisional

Probab=97.91  E-value=9.1e-05  Score=65.23  Aligned_cols=96  Identities=18%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-  237 (344)
                      +|++|.|+-....  ..+..+.+.|+..|++++++....+ .        .    ...+.  .+||+|||+||..+... 
T Consensus         1 ~m~~ilviqh~~~--e~~g~i~~~L~~~g~~~~v~~~~~~-~--------~----~~~~~--~~~d~lii~Ggp~~~~d~   63 (234)
T PRK07053          1 MMKTAVAIRHVAF--EDLGSFEQVLGARGYRVRYVDVGVD-D--------L----ETLDA--LEPDLLVVLGGPIGVYDD   63 (234)
T ss_pred             CCceEEEEECCCC--CCChHHHHHHHHCCCeEEEEecCCC-c--------c----CCCCc--cCCCEEEECCCCCCCCCC
Confidence            4677766655443  4455578999999999988776543 1        0    01122  57999999998533222 


Q ss_pred             --hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 --FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 --l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                        ..--..+.++|+++.+.+++|.+||-|..+ |+.+
T Consensus        64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Ql-la~a   99 (234)
T PRK07053         64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQL-IARA   99 (234)
T ss_pred             CcCCcHHHHHHHHHHHHHCCCCEEEECccHHH-HHHH
Confidence              112246789999999999999999999877 6654

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.89  E-value=3.6e-05  Score=65.21  Aligned_cols=84  Identities=20%  Similarity=0.298  Sum_probs=61.6

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-HhhhcC
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFAKS  241 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l~~~  241 (344)
                      |+|++.+|......    +.|++.|+++..++...                   +.  .++|.|++|||.... .....+
T Consensus         1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~   55 (183)
T cd01749           1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR   55 (183)
T ss_pred             CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence            57888887765333    88899998888776521                   12  578999999995322 223345


Q ss_pred             HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          242 KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..+.++|+++.++++++.++|.|..+ |+.+
T Consensus        56 ~~~~~~i~~~~~~g~PvlGiC~G~ql-L~~~   85 (183)
T cd01749          56 TGLLDPLREFIRAGKPVFGTCAGLIL-LAKE   85 (183)
T ss_pred             CCHHHHHHHHHHcCCeEEEECHHHHH-HHHH
Confidence            56789999999999999999999765 7654

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.74  E-value=0.00012  Score=77.72  Aligned_cols=109  Identities=18%  Similarity=0.309  Sum_probs=75.8

Q ss_pred             CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeecccc-ccccCCCccEEEEcCCccchH
Q 019238          159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLI-DEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~D~liipGG~~~~~  236 (344)
                      .++||+|+.+||. ++.|..   ..|.++|+++..+....  .....  + ...-..+ .++  .+|++|++|||+..-+
T Consensus       976 ~kpkvaIl~~pGtNce~d~a---~Af~~aG~~~~~v~~~d--l~~~~--i-~~s~~~~~~~l--~~~~~l~~pGGFSyGD 1045 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSA---KAFEKEGAEVNLVIFRN--LNEEA--L-VESVETMVDEI--DKSQILMLPGGFSAGD 1045 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHH---HHHHHcCCceEEEEEec--Ccccc--c-ccchhhhhccc--ccCcEEEEcCccCccc
Confidence            4689999999998 566644   45556998887776543  00000  0 0000011 223  7899999999974222


Q ss_pred             ----------hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCC
Q 019238          237 ----------AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK  278 (344)
Q Consensus       237 ----------~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~  278 (344)
                                .+..++.+.+-+++|+++++++.+||+|-.+ |.+.|||.+.
T Consensus      1046 ~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~-L~~lGLlP~~ 1096 (1239)
T TIGR01857      1046 EPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQA-LVKSGLLPYG 1096 (1239)
T ss_pred             ccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHH-HHHcCCCcCc
Confidence                      2355688999999999999999999999665 9999999853

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.73  E-value=0.00015  Score=61.59  Aligned_cols=92  Identities=26%  Similarity=0.387  Sum_probs=62.3

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcC---CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--H
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--Q  236 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~---~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~  236 (344)
                      ||+|+..+....  .....+.|++.+   ++++.+....+ .             ...+.  .+||.|+++||....  .
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-~-------------~~~~~--~~~dgvil~Gg~~~~~~~   62 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-E-------------LLPDL--DDYDGLVILGGPMSVDED   62 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-C-------------CCCCc--ccCCEEEECCCCccCCcc
Confidence            466666665443  556677888877   56666555442 1             02233  689999999996433  1


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .....+.+.++|+++.++++++.+||.|..+ |+.+
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~-l~~~   97 (188)
T cd01741          63 DYPWLKKLKELIRQALAAGKPVLGICLGHQL-LARA   97 (188)
T ss_pred             CChHHHHHHHHHHHHHHCCCCEEEECccHHH-HHHH
Confidence            1122356899999999999999999999866 6543

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.65  E-value=0.00092  Score=62.72  Aligned_cols=91  Identities=20%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--Hhh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF  238 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~~l  238 (344)
                      .||+|.--.=|+. =+-.-++.|+..|+++.++|+-.+                 +++ |++.|+|++|||+...  ..|
T Consensus       246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L  306 (451)
T COG1797         246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEEL  306 (451)
T ss_pred             ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHH
Confidence            6899665543333 345578999999999999998552                 222 3468999999998543  357


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .+++.+++.|++++..|++|-+=|.|-+. |.+
T Consensus       307 ~~n~~~~~~i~~~~~~G~piyaECGGlMY-L~~  338 (451)
T COG1797         307 SANESMRRAIKAFAAAGKPIYAECGGLMY-LGE  338 (451)
T ss_pred             hhCHHHHHHHHHHHHcCCceEEeccccee-ehh
Confidence            88999999999999999999999999544 654

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.60  E-value=0.00024  Score=61.38  Aligned_cols=85  Identities=25%  Similarity=0.250  Sum_probs=58.4

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh--hc
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--AK  240 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l--~~  240 (344)
                      |+|+-+.+   .....+.+.|++.|++++++..                   .++.  .+||.|||||+.......  ..
T Consensus         2 i~~~d~~~---~~~~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~   57 (205)
T PRK13141          2 IAIIDYGM---GNLRSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR   57 (205)
T ss_pred             EEEEEcCC---chHHHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence            44444442   3346678999999988877431                   1233  579999999963212221  12


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+.+.++|+++..++++|.+||.|..+ |+..
T Consensus        58 ~~~~~~~i~~~~~~~~pvlGIC~G~Ql-l~~~   88 (205)
T PRK13141         58 ERGLDEVIKEAVASGKPLLGICLGMQL-LFES   88 (205)
T ss_pred             HcChHHHHHHHHHCCCcEEEECHHHHH-hhhc
Confidence            235789999999999999999999876 8875

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.60  E-value=0.00029  Score=60.95  Aligned_cols=87  Identities=18%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc---chH
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---GAQ  236 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~---~~~  236 (344)
                      +++|+|+-+..-+.   ....+.|++.|+++.+++..                   +++  .++|.||+||+-.   .+.
T Consensus         1 ~~~v~iid~~~GN~---~sl~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~   56 (210)
T CHL00188          1 MMKIGIIDYSMGNL---HSVSRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMK   56 (210)
T ss_pred             CcEEEEEEcCCccH---HHHHHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHH
Confidence            46899999884333   45677888888888766421                   122  4689999999422   112


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+ .+..+.+.|+++.+++++|.+||.|..+ |++.
T Consensus        57 ~l-~~~gl~~~i~~~~~~~~pvlGIClG~Ql-l~~~   90 (210)
T CHL00188         57 KL-EKKGLITPIKKWIAEGNPFIGICLGLHL-LFET   90 (210)
T ss_pred             HH-HHCCHHHHHHHHHHcCCCEEEECHHHHH-Hhhc
Confidence            22 2235667888888999999999999766 7764

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=97.59  E-value=0.0003  Score=61.77  Aligned_cols=75  Identities=23%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-----cccCChHHHHHHHHHhhCCCEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY   77 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i   77 (344)
                      .++.|+++|+++.++.... ..              +++.+-.   ||....+     .+..++.+.++|+++.++|+++
T Consensus        17 ~~~al~~~G~~~~~i~~~~-~~--------------l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pv   81 (227)
T TIGR01737        17 TVYALRLLGVDAEIVWYED-GS--------------LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPV   81 (227)
T ss_pred             HHHHHHHCCCeEEEEecCC-CC--------------CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEE
Confidence            3567888999988886542 11              1222211   5432111     1234567889999999999999


Q ss_pred             EEEchhHHHHHHHcCCCCC
Q 019238           78 AAICVFLAVALGSWGLLKG   96 (344)
Q Consensus        78 ~aiC~g~~~~La~aGll~g   96 (344)
                      .+||.|. .+|+++|+|+|
T Consensus        82 lgIC~G~-QlLa~~GlL~G   99 (227)
T TIGR01737        82 LGICNGF-QILVEAGLLPG   99 (227)
T ss_pred             EEECHHH-HHHHHcCCCCC
Confidence            9999999 59999999975

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.58  E-value=0.0001  Score=61.39  Aligned_cols=53  Identities=21%  Similarity=0.369  Sum_probs=39.6

Q ss_pred             ccccCCCccEEEEcCCc-cchHhhhcCHHHHHHHHHHHhcC-CcEEEEcchhhhhhhh
Q 019238          216 DEAAKLSYDLIVLPGGL-GGAQAFAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP  271 (344)
Q Consensus       216 ~~~~~~~~D~liipGG~-~~~~~l~~~~~l~~~l~~~~~~~-k~I~aic~G~~~lLa~  271 (344)
                      ++.  .+.|.||||||- ..+..+.....+.+-|+++.++| +||.+.|+|. ++||+
T Consensus        29 ~dL--~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl-IlLa~   83 (188)
T PF01174_consen   29 EDL--EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL-ILLAK   83 (188)
T ss_dssp             GGG--TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH-HHHEE
T ss_pred             HHH--ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH-HHhhh
Confidence            444  568999999993 33455667778999999999998 9999999994 66886

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.53  E-value=0.00054  Score=73.43  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=74.9

Q ss_pred             CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc---
Q 019238          159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG---  234 (344)
Q Consensus       159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~---  234 (344)
                      .++||+|+.+||. .+.|   ....|..+|++...+..+.  ...   |          .....+|+.|++|||+..   
T Consensus      1036 ~~pkVaVl~~pGtN~~~e---~~~Af~~aGf~~~~V~~~d--l~~---~----------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206       1036 SKPKVAIIREEGSNGDRE---MAAAFYAAGFEPWDVTMSD--LLN---G----------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred             CCCeEEEEECCCCCCHHH---HHHHHHHcCCceEEEEeee--ccc---c----------cccccceeEEEEcCcCCCccc
Confidence            4689999999998 4555   4456668998887666542  100   0          111267999999999731   


Q ss_pred             -------hHhhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhhhcCCCCCCe
Q 019238          235 -------AQAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHGLLKGKK  279 (344)
Q Consensus       235 -------~~~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa~aGlL~g~~  279 (344)
                             ...+..++.+.+.+++|+ +.++++.+||+|-.+ |.+.|||.|..
T Consensus      1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQi-L~~lgllPg~~ 1149 (1307)
T PLN03206       1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQL-MALLGWVPGPQ 1149 (1307)
T ss_pred             cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHH-HHHcCCCCCCc
Confidence                   123456788999999999 559999999999766 99999998753

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=97.48  E-value=0.00062  Score=58.03  Aligned_cols=84  Identities=19%  Similarity=0.317  Sum_probs=59.0

Q ss_pred             EeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHH
Q 019238          166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV  245 (344)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~  245 (344)
                      ++.|..+..... +.+.|++.|++++++..+..               ..++.  .+||.|||.||.+.+.   ..+.+.
T Consensus         5 liid~~dsf~~~-i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~~~~~~   63 (190)
T PRK06895          5 LIINNHDSFTFN-LVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---AYPQLF   63 (190)
T ss_pred             EEEeCCCchHHH-HHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---HhhHHH
Confidence            444555554444 89999999999988776432               12333  5689999988865332   234577


Q ss_pred             HHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          246 NMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       246 ~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ++|++ +++++||.+||-|..+ |+.+
T Consensus        64 ~~i~~-~~~~~PiLGIClG~Ql-la~~   88 (190)
T PRK06895         64 AMLER-YHQHKSILGVCLGHQT-LCEF   88 (190)
T ss_pred             HHHHH-hcCCCCEEEEcHHHHH-HHHH
Confidence            88886 6789999999999877 6654

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.48  E-value=0.00016  Score=59.76  Aligned_cols=53  Identities=23%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             cCCCccEEEEcCCccchH--hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          219 AKLSYDLIVLPGGLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       219 ~~~~~D~liipGG~~~~~--~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .++++|+|++|||.....  .+.++..+.+.|+++.++|++|.++|.|-.+ |.+.
T Consensus         4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~-Lg~~   58 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQY-LGES   58 (158)
T ss_pred             CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHH-HHHH
Confidence            457899999999975433  3466788999999999999999999999544 7654

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.45  E-value=0.00091  Score=59.11  Aligned_cols=96  Identities=14%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      .++||.|+.-.++....  .+.+.|+..|.+++++.+..+.+         .|    ++.  .+||.++|.||..+..+.
T Consensus         6 ~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~~~---------~p----~~l--~~~dgvii~Ggp~~~~d~   68 (239)
T PRK06490          6 DKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLGDP---------LP----DTL--EDHAGAVIFGGPMSANDP   68 (239)
T ss_pred             CCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCCCC---------CC----Ccc--cccCEEEEECCCCCCCCC
Confidence            36888888766655444  46788999999988876654311         01    233  579999999985433221


Q ss_pred             -hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 -~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       .--..+.+||+++.+.+++|.+||-|..+ |+.+
T Consensus        69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Ql-la~a  102 (239)
T PRK06490         69 DDFIRREIDWISVPLKENKPFLGICLGAQM-LARH  102 (239)
T ss_pred             chHHHHHHHHHHHHHHCCCCEEEECHhHHH-HHHH
Confidence             11234679999999999999999999877 7765

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=97.43  E-value=0.00052  Score=61.28  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCC--------hHHHHHHHHHhhCC
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKES--------EVLESIVKKQASDG   74 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~--------~~~~~~l~~~~~~g   74 (344)
                      +++.|+++|+++.+++...  ..        .....+++.+-.   ||+...+.++..        +.+.+.|+++.+++
T Consensus        20 ~~~Al~~aG~~v~~v~~~~--~~--------~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~g   89 (261)
T PRK01175         20 TVKAFRRLGVEPEYVHIND--LA--------AERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEG   89 (261)
T ss_pred             HHHHHHHCCCcEEEEeecc--cc--------ccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCC
Confidence            5788899999999998763  10        001112333321   553222222211        33457889999999


Q ss_pred             CEEEEEchhHHHHHHHcCCCCC
Q 019238           75 RLYAAICVFLAVALGSWGLLKG   96 (344)
Q Consensus        75 ~~i~aiC~g~~~~La~aGll~g   96 (344)
                      +++.+||.|.. +|+++|+|-|
T Consensus        90 kpVLGICnG~Q-lLa~~GlLpg  110 (261)
T PRK01175         90 YPIIGICNGFQ-VLVELGLLPG  110 (261)
T ss_pred             CeEEEECHHHH-HHHHCCCCCC
Confidence            99999999995 9999999976

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.43  E-value=0.00077  Score=56.80  Aligned_cols=74  Identities=24%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~  257 (344)
                      ...+.++..|.++.++..+..                .++....+||.|+++||...+.   +.....++++++.++++|
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P   71 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP   71 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence            357788888888887765531                2222235799999999954332   346778899999999999


Q ss_pred             EEEEcchhhhhhhh
Q 019238          258 YGAICASPALVLEP  271 (344)
Q Consensus       258 I~aic~G~~~lLa~  271 (344)
                      |.+||.|..+ |+.
T Consensus        72 vlGIC~G~Q~-l~~   84 (178)
T cd01744          72 IFGICLGHQL-LAL   84 (178)
T ss_pred             EEEECHHHHH-HHH
Confidence            9999999877 543

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.42  E-value=0.00073  Score=72.78  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             CCCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-
Q 019238          158 DNSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-  235 (344)
Q Consensus       158 ~~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-  235 (344)
                      .+++||+|+.+||. .+.|.   ...|..+|++...+..+.  -         ..    ......+|+.|++|||+..- 
T Consensus      1053 ~~~p~vail~~pG~N~~~e~---~~Af~~aGf~~~~v~~~d--l---------~~----~~~~l~~~~~lv~~GGFSygD 1114 (1310)
T TIGR01735      1053 GVRPKVAILREQGVNGDREM---AAAFDRAGFEAWDVHMSD--L---------LA----GRVHLDEFRGLAACGGFSYGD 1114 (1310)
T ss_pred             CCCceEEEEECCCCCCHHHH---HHHHHHhCCCcEEEEEec--c---------cc----CCcchhheeEEEEcCCCCCcc
Confidence            35689999999999 45554   446668898877766543  0         00    01112678999999996311 


Q ss_pred             ---------HhhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhh-hcCCCCCC
Q 019238          236 ---------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLE-PHGLLKGK  278 (344)
Q Consensus       236 ---------~~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa-~aGlL~g~  278 (344)
                               ..+..++.+.+.+++|+ +.++++.+||+|-.+ |. ..|||.|.
T Consensus      1115 ~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~-L~~~~gllp~~ 1167 (1310)
T TIGR01735      1115 VLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQM-LSNLLEWIPGT 1167 (1310)
T ss_pred             chhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHH-HHHHhCcCCCC
Confidence                     22456788999999999 899999999999777 66 99999864

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05665 amidotransferase; Provisional

Probab=97.41  E-value=0.0014  Score=57.85  Aligned_cols=51  Identities=18%  Similarity=0.157  Sum_probs=38.9

Q ss_pred             CCccEEEEcCCccchHh-hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          221 LSYDLIVLPGGLGGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~-l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+||.+||.||..+... ..--..+.+||++.+++++++.+||-|..+ ||.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQl-la~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQL-LALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHH-HHHH
Confidence            57999999999543322 111246789999999999999999999877 7654

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.38  E-value=0.0009  Score=64.82  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=65.4

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--Hhh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF  238 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~~l  238 (344)
                      .+|+|.-.+-|+..= ..=++.|++.|+++..+++-.+                 ++.  +++|+|++|||....  ..+
T Consensus       245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~l  304 (449)
T TIGR00379       245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEEL  304 (449)
T ss_pred             cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHHH
Confidence            689988887554421 3345667778888888776432                 122  478999999997432  235


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+..+.+.|+++.++|.+|.++|.|-. +|++
T Consensus       305 ~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~  336 (449)
T TIGR00379       305 SQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQ  336 (449)
T ss_pred             HhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence            5678899999999999999999999954 4764

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.37  E-value=0.001  Score=71.83  Aligned_cols=100  Identities=12%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--
Q 019238          159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--  235 (344)
Q Consensus       159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--  235 (344)
                      .++||+|+.+||. .+.|   ....|+.+|+++..+..+.  -..   |     .   ..+  .+|+.|++|||+..-  
T Consensus      1034 ~~pkv~il~~pG~N~~~e---~~~Af~~aG~~~~~v~~~d--l~~---~-----~---~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVE---MAAAFDRAGFDAIDVHMSD--LLA---G-----R---VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred             CCCeEEEEECCCCCCHHH---HHHHHHHcCCCeEEEEeec--CcC---C-----C---CCh--hhCcEEEECCccCCccc
Confidence            4689999999998 4555   4456678998887766543  000   0     0   123  789999999996321  


Q ss_pred             --------HhhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhhhcC-CCCC
Q 019238          236 --------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHG-LLKG  277 (344)
Q Consensus       236 --------~~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa~aG-lL~g  277 (344)
                              ..+..|+.+.+.+++|+ ++++++.+||+|-.+ |.+.| ++.+
T Consensus      1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~-L~~lg~l~p~ 1146 (1290)
T PRK05297       1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQM-MSNLKEIIPG 1146 (1290)
T ss_pred             chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHH-HHHhCCccCC
Confidence                    23456788999999987 789999999999766 99997 7655

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=97.34  E-value=0.0029  Score=67.99  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=73.6

Q ss_pred             CCCeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc---
Q 019238          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG---  234 (344)
Q Consensus       159 ~~~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~---  234 (344)
                      .++||+|+.++|.. +.|   ....|..+|+++..+..+.  -         .....   .  .+|+.|+++||++.   
T Consensus       928 ~~p~VaIl~~pG~N~~~e---~~~Af~~aGf~~~~v~~~d--l---------~~~~~---l--~~f~glv~~Ggfsy~D~  988 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPHG---LLAALTNAGFDPRIVSITE--L---------KKTDF---L--DTFSGLIIGGASGTLDS  988 (1202)
T ss_pred             CCCeEEEEeCCCCCCHHH---HHHHHHHcCCceEEEEecc--C---------CCCCc---h--hheEEEEEcCcCCCCcc
Confidence            36799999999994 444   4566777999988777654  1         00111   1  47899999998742   


Q ss_pred             -------hHhhhcCHHHHHHHHHHH-hcCCcEEEEcc-hhhhhhhhcCCCCC
Q 019238          235 -------AQAFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLKG  277 (344)
Q Consensus       235 -------~~~l~~~~~l~~~l~~~~-~~~k~I~aic~-G~~~lLa~aGlL~g  277 (344)
                             ...+..++.+.+.+++|+ +.++++.+||+ |-.+ |.+.|+|..
T Consensus       989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~-L~~lg~l~~ 1039 (1202)
T TIGR01739       989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQL-LLALNIVGY 1039 (1202)
T ss_pred             chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHH-HHHcCCCcC
Confidence                   123456889999999999 56999999999 9766 999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=97.34  E-value=0.00099  Score=53.87  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=63.3

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~  237 (344)
                      .+.-|++|...|.....+..+-.-+....|.+.+               .+.+-.+-.+.  .+.|+||||||-.. +..
T Consensus        10 tn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~---------------~~~tVKT~~D~--aq~DaLIIPGGEST~msl   72 (226)
T KOG3210|consen   10 TNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKL---------------SVMTVKTKNDL--AQCDALIIPGGESTAMSL   72 (226)
T ss_pred             cceEEeeeehhhHHHHHHHHHHHhhccCcceEEE---------------EEEeecCHHHH--hhCCEEEecCCchhHHHH
Confidence            3567999999988776665544443333333321               22333344555  78999999999533 334


Q ss_pred             hhcCHHHHHHHHHHHhcC-CcEEEEcchhhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP  271 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~-k~I~aic~G~~~lLa~  271 (344)
                      +.+...+.+-|.++..++ +++-+.|+|. ++|.+
T Consensus        73 ia~~tgL~d~L~~fVhn~~k~~WGTCAGm-I~LS~  106 (226)
T KOG3210|consen   73 IAERTGLYDDLYAFVHNPSKVTWGTCAGM-IYLSQ  106 (226)
T ss_pred             HHhhhhhHHHHHHHhcCCCccceeechhh-hhhhh
Confidence            455556889999998877 9999999995 54654

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.30  E-value=0.0015  Score=56.48  Aligned_cols=91  Identities=22%  Similarity=0.183  Sum_probs=56.1

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--  237 (344)
                      +|||+|+=|..-+..+   ....|++.|+++.+.-..                 ..++.  .++|.|||||+......  
T Consensus         1 ~~~~~iid~g~gn~~s---~~~al~~~g~~~~v~~~~-----------------~~~~l--~~~d~lIlpG~~~~~~~~~   58 (209)
T PRK13146          1 MMTVAIIDYGSGNLRS---AAKALERAGAGADVVVTA-----------------DPDAV--AAADRVVLPGVGAFADCMR   58 (209)
T ss_pred             CCeEEEEECCCChHHH---HHHHHHHcCCCccEEEEC-----------------CHHHh--cCCCEEEECCCCcHHHHHH
Confidence            4789988887555544   457777888743111111                 12444  68999999997332221  


Q ss_pred             -hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC
Q 019238          238 -FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (344)
Q Consensus       238 -l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG  273 (344)
                       +........+++..++.+++|.+||.|..+ |+.++
T Consensus        59 ~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~-l~~~~   94 (209)
T PRK13146         59 GLRAVGLGEAVIEAVLAAGRPFLGICVGMQL-LFERG   94 (209)
T ss_pred             HHHHCCcHHHHHHHHHhCCCcEEEECHHHHH-Hhhcc
Confidence             222222234455555789999999999765 88873

>PHA03366 FGAM-synthase; Provisional

Probab=97.28  E-value=0.0017  Score=70.18  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=74.1

Q ss_pred             CCCCeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-
Q 019238          158 DNSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-  235 (344)
Q Consensus       158 ~~~~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-  235 (344)
                      ...+||+|+.++|.. +.|   +...|..+|+++..+..+.  -         ... ..  +  .+|+.|++|||+... 
T Consensus      1026 ~~~prVaIl~~pG~N~~~e---~~~Af~~aGf~~~~v~~~d--L---------~~~-~~--l--~~f~glv~~GGFS~gD 1086 (1304)
T PHA03366       1026 DKRHRVAVLLLPGCPGPHA---LLAAFTNAGFDPYPVSIEE--L---------KDG-TF--L--DEFSGLVIGGSSGAED 1086 (1304)
T ss_pred             CCCCeEEEEECCCCCCHHH---HHHHHHHcCCceEEEEeec--C---------CCC-Cc--c--ccceEEEEcCCCCCcc
Confidence            346899999999994 444   4566777999988777643  0         001 11  3  678999999997422 


Q ss_pred             ---------HhhhcCHHHHHHHHHHH-hcCCcEEEEcc-hhhhhhhhcCCCC
Q 019238          236 ---------QAFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLK  276 (344)
Q Consensus       236 ---------~~l~~~~~l~~~l~~~~-~~~k~I~aic~-G~~~lLa~aGlL~  276 (344)
                               ..+..|+.+.+.+++|+ +.++++.+||+ |-.+ |.+.|+|.
T Consensus      1087 ~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~-L~~lgll~ 1137 (1304)
T PHA03366       1087 SYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQI-LFALKAVG 1137 (1304)
T ss_pred             cccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHH-HHHcCCcc
Confidence                     23457889999999999 56999999999 9765 99999994

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=97.21  E-value=0.00088  Score=57.49  Aligned_cols=72  Identities=24%  Similarity=0.259  Sum_probs=52.0

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC   81 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (344)
                      .+.|+++|+++.++++..+.              .+.+++..   ||.+.  +..+.++..+.+.|+++.++|+++.+||
T Consensus        17 ~~~l~~~G~~v~~~s~~~~~--------------~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgIC   82 (198)
T cd03130          17 LELLEAAGAELVPFSPLKDE--------------ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAEC   82 (198)
T ss_pred             HHHHHHCCCEEEEECCCCCC--------------CCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEc
Confidence            46688999999999875211              11121111   65433  4567677889999999999999999999


Q ss_pred             hhHHHHHHHcCC
Q 019238           82 VFLAVALGSWGL   93 (344)
Q Consensus        82 ~g~~~~La~aGl   93 (344)
                      .|.+ +|++...
T Consensus        83 gG~q-lL~~~~~   93 (198)
T cd03130          83 GGLM-YLGESLD   93 (198)
T ss_pred             ccHH-HHHHHhh
Confidence            9996 8887665

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.14  E-value=0.0017  Score=48.76  Aligned_cols=88  Identities=23%  Similarity=0.328  Sum_probs=61.4

Q ss_pred             eehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEE
Q 019238            3 AVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA   79 (344)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a   79 (344)
                      +..+.+.|+++++++++++..+. ....        .....+.+..   ||.........++.+++|++++.++++++.+
T Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~--------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~   84 (115)
T cd01653          14 LASPLDALREAGAEVDVVSPDGG-PVES--------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILG   84 (115)
T ss_pred             hHHHHHHHHHCCCeEEEEcCCCC-ceec--------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence            45688899999999999999963 4443        1111222211   4433333222479999999999999999999


Q ss_pred             EchhHHHHHHHcCCCCCCCCCCEEcCCCCCcHHH
Q 019238           80 ICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPME  113 (344)
Q Consensus        80 iC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~  113 (344)
                      +|.|+ ++|             ++|.++..+..+
T Consensus        85 ~c~g~-~~l-------------~~~~~~~~~~~~  104 (115)
T cd01653          85 ICLGA-QLL-------------VLGVQFHPEAID  104 (115)
T ss_pred             ECchh-HhH-------------eeeccCChhhhh
Confidence            99999 577             677777766543

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.07  E-value=0.003  Score=53.24  Aligned_cols=86  Identities=26%  Similarity=0.398  Sum_probs=59.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC-Cc--cchH
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GL--GGAQ  236 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG-G~--~~~~  236 (344)
                      +++|+|+=|.--   .+..+...|+++|+++.+.+.                   .+++  ...|.||+|| |.  ..+.
T Consensus         1 m~~i~IIDyg~G---NL~Sv~~Aler~G~~~~vs~d-------------------~~~i--~~AD~liLPGVGaf~~am~   56 (204)
T COG0118           1 MMMVAIIDYGSG---NLRSVKKALERLGAEVVVSRD-------------------PEEI--LKADKLILPGVGAFGAAMA   56 (204)
T ss_pred             CCEEEEEEcCcc---hHHHHHHHHHHcCCeeEEecC-------------------HHHH--hhCCEEEecCCCCHHHHHH
Confidence            467888776543   445567778888877654222                   2344  5789999999 42  1233


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      .+.+ ..+.+.|++....++|+.+||-|..+++.
T Consensus        57 ~L~~-~gl~~~i~~~~~~~kP~LGIClGMQlLfe   89 (204)
T COG0118          57 NLRE-RGLIEAIKEAVESGKPFLGICLGMQLLFE   89 (204)
T ss_pred             HHHh-cchHHHHHHHHhcCCCEEEEeHhHHhhhh
Confidence            4433 37899999999999999999999887443

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.06  E-value=0.0032  Score=55.64  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             CCeEEEEeCCCcch---hHHHHHHHH----HHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238          160 SPQILVPIANGSEE---MEAVIIIDI----LRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL  232 (344)
Q Consensus       160 ~~~v~ill~~g~~~---~e~~~~~~~----l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~  232 (344)
                      |+||+||..+.-.+   .......+.    |...+.+++++.+..+.              .+.+.  .+||.|||.||.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~p~~--~~~dgvvi~Gg~   64 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGE--------------PLPAP--DDFAGVIITGSW   64 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCC--------------CCCCh--hhcCEEEEeCCC
Confidence            46688886653321   112223333    33456676666554431              12233  679999999985


Q ss_pred             cchHh-hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          233 GGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       233 ~~~~~-l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..... ..--..+.+||++..+++++|.+||-|..+ |+.+
T Consensus        65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Ql-la~a  104 (237)
T PRK09065         65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQL-LAHA  104 (237)
T ss_pred             cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHH-HHHH
Confidence            33211 111245789999999999999999999877 6643

>PRK00784 cobyric acid synthase; Provisional

Probab=97.04  E-value=0.0019  Score=63.34  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=62.0

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHh-cCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--  237 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--  237 (344)
                      .||+|+-+|...-.   .=++.|+. .|+++.++++..                   +.  +++|.|++|||......  
T Consensus       252 ~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~~~  307 (488)
T PRK00784        252 LRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIADLA  307 (488)
T ss_pred             eEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHHHH
Confidence            58999997733222   34566776 788887776522                   22  46899999999643322  


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      +..+..+.+.|+++.++|++|.++|.|..+ |++
T Consensus       308 ~~~~~~l~~~i~~~~~~g~pilg~C~G~~~-L~~  340 (488)
T PRK00784        308 WLRESGWDEAIRAHARRGGPVLGICGGYQM-LGR  340 (488)
T ss_pred             HHHHcCHHHHHHHHHHcCCeEEEECHHHHH-Hhh
Confidence            335666899999999999999999999654 765

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=96.96  E-value=0.0035  Score=53.29  Aligned_cols=87  Identities=10%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|+++..... +.+.|+..|+++.++..+..               +++++...+||.||+-||.+.+..   ....
T Consensus         2 il~idn~Dsft~n-l~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~---~~~~   62 (187)
T PRK08007          2 ILLIDNYDSFTWN-LYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDE---AGIS   62 (187)
T ss_pred             EEEEECCCccHHH-HHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHH---CCcc
Confidence            5666777666644 67888888988887766531               233333347899999999765543   3445


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .++++. +..++||.+||-|..+ |+.+
T Consensus        63 ~~~~~~-~~~~~PiLGIClG~Q~-la~a   88 (187)
T PRK08007         63 LDVIRH-YAGRLPILGVCLGHQA-MAQA   88 (187)
T ss_pred             HHHHHH-hcCCCCEEEECHHHHH-HHHH
Confidence            667776 5678999999999877 6654

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=96.93  E-value=0.0032  Score=53.49  Aligned_cols=77  Identities=18%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhc
Q 019238          175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKES  254 (344)
Q Consensus       175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~  254 (344)
                      -...+.+.|++.|++++++..+..                .++....++|.|++|||.....    +.....++++..+.
T Consensus        10 ~~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~~----~~~~~~~i~~~~~~   69 (188)
T TIGR00888        10 YTQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSVY----AENAPRADEKIFEL   69 (188)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCcC----cCCchHHHHHHHhC
Confidence            345567888888988877765431                2333223467999999954321    22346788988999


Q ss_pred             CCcEEEEcchhhhhhhhc
Q 019238          255 NRPYGAICASPALVLEPH  272 (344)
Q Consensus       255 ~k~I~aic~G~~~lLa~a  272 (344)
                      ++||.+||-|..+ |+.+
T Consensus        70 ~~PilGIC~G~Ql-l~~~   86 (188)
T TIGR00888        70 GVPVLGICYGMQL-MAKQ   86 (188)
T ss_pred             CCCEEEECHHHHH-HHHh
Confidence            9999999999877 6654

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=96.88  E-value=0.0033  Score=53.62  Aligned_cols=87  Identities=9%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|+.+... ..+.+.|++.|++++++..+..               .++++...++|.||+-||...+..   ....
T Consensus         2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~---~~~~   62 (191)
T PRK06774          2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNE---AGIS   62 (191)
T ss_pred             EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHh---CCCc
Confidence            45556665554 3467888889999988776531               234443346899999999655433   3345


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..+++. +++++||.+||-|..+ |+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIC~G~Ql-la~~   88 (191)
T PRK06774         63 LAVIRH-FADKLPILGVCLGHQA-LGQA   88 (191)
T ss_pred             hHHHHH-hcCCCCEEEECHHHHH-HHHH
Confidence            566665 5678999999999887 6654

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=96.87  E-value=0.0018  Score=55.60  Aligned_cols=76  Identities=29%  Similarity=0.397  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--hhcCHHHHHHHHHHH
Q 019238          175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAKSKKLVNMLKKQK  252 (344)
Q Consensus       175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--l~~~~~l~~~l~~~~  252 (344)
                      .+..+.+.|++.|++++++...                   ++.  .+||.|++||+......  ....+.+.++|+++.
T Consensus        10 ~~~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~   68 (198)
T cd01748          10 NLRSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAI   68 (198)
T ss_pred             hHHHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHH
Confidence            3455678899999888776521                   123  57899999996321111  123345789999999


Q ss_pred             hcCCcEEEEcchhhhhhhhc
Q 019238          253 ESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       253 ~~~k~I~aic~G~~~lLa~a  272 (344)
                      +++++|.++|.|..+ |+.+
T Consensus        69 ~~~~pilGiC~G~q~-l~~~   87 (198)
T cd01748          69 ASGKPFLGICLGMQL-LFES   87 (198)
T ss_pred             HCCCcEEEECHHHHH-hccc
Confidence            999999999999766 8876

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=96.87  E-value=0.005  Score=53.50  Aligned_cols=78  Identities=15%  Similarity=0.277  Sum_probs=54.8

Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (344)
Q Consensus       177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k  256 (344)
                      ....+.|+..|+++.++..+.. ..         ++  ..+. ..+||.|||.||...+.   +....++|++++.++++
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~   77 (214)
T PRK07765         14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT   77 (214)
T ss_pred             HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence            3567888999999988876531 00         11  1111 24799999999965433   33456789999999999


Q ss_pred             cEEEEcchhhhhhhh
Q 019238          257 PYGAICASPALVLEP  271 (344)
Q Consensus       257 ~I~aic~G~~~lLa~  271 (344)
                      ||.+||-|..+ |+.
T Consensus        78 PiLGIC~G~Ql-la~   91 (214)
T PRK07765         78 PLLGVCLGHQA-IGV   91 (214)
T ss_pred             CEEEEccCHHH-HHH
Confidence            99999999877 543

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.86  E-value=0.0048  Score=52.84  Aligned_cols=84  Identities=20%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh--
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--  238 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l--  238 (344)
                      |+|+|+=|..-....   +...|++.|+++.++...                   ++.  .++|.||+||.-......  
T Consensus         1 m~i~iid~g~gn~~s---~~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~~~~~~~~   56 (196)
T PRK13170          1 MNVVIIDTGCANLSS---VKFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGTAQAAMDQ   56 (196)
T ss_pred             CeEEEEeCCCchHHH---HHHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCchHHHHHH
Confidence            466666554333333   455778888777666321                   233  467999999942211111  


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .....+.+.|++   .++||.+||.|..+ |+.+
T Consensus        57 l~~~~l~~~i~~---~~~PilGIClG~Ql-l~~~   86 (196)
T PRK13170         57 LRERELIDLIKA---CTQPVLGICLGMQL-LGER   86 (196)
T ss_pred             HHHcChHHHHHH---cCCCEEEECHHHHH-Hhhh
Confidence            112234555554   47999999999766 7765

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=96.83  E-value=0.007  Score=52.50  Aligned_cols=95  Identities=20%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             CCeEEEEeCCCcchhH-HHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--h
Q 019238          160 SPQILVPIANGSEEME-AVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--A  235 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e-~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~  235 (344)
                      .+||+++-.......| +......|++. |+++..+....            .++ ..+.+  .++|+|++|||...  .
T Consensus        31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~------------~~~-~~~~l--~~ad~I~l~GG~~~~~~   95 (212)
T cd03146          31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD------------TED-PLDAL--LEADVIYVGGGNTFNLL   95 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC------------ccc-HHHHH--hcCCEEEECCchHHHHH
Confidence            4788888776554334 55678889999 88876554321            011 13444  67899999999421  1


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+ +...+.+.|++.+++|++++++|.|+.+ +..
T Consensus        96 ~~l-~~~~l~~~l~~~~~~g~~i~G~SAGa~i-~~~  129 (212)
T cd03146          96 AQW-REHGLDAILKAALERGVVYIGWSAGSNC-WFP  129 (212)
T ss_pred             HHH-HHcCHHHHHHHHHHCCCEEEEECHhHHh-hCC
Confidence            222 3336788899989999999999999755 666

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.81  E-value=0.0089  Score=55.95  Aligned_cols=87  Identities=22%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      .+||+++=+ |+.    ....+.|.+.|+++.++..+.                +++++...++|.|+++||.+.+..  
T Consensus       177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~--  233 (360)
T PRK12564        177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA--  233 (360)
T ss_pred             CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH--
Confidence            367766654 443    247788888999887776543                123332236899999999654433  


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                       .+..+++++++.++++||.+||-|..+ |+.
T Consensus       234 -~~~~~~~i~~~~~~~~PilGIClG~Ql-La~  263 (360)
T PRK12564        234 -LDYAIEMIRELLEKKIPIFGICLGHQL-LAL  263 (360)
T ss_pred             -HHHHHHHHHHHHHcCCeEEEECHHHHH-HHH
Confidence             366788999999889999999999877 543

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=96.77  E-value=0.0064  Score=51.71  Aligned_cols=87  Identities=15%  Similarity=0.183  Sum_probs=56.6

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|..+... ....+.|+..|+++.++..+.-               .+++....++|.|||.||.+.+..   ....
T Consensus         2 il~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~   62 (188)
T TIGR00566         2 VLMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGIS   62 (188)
T ss_pred             EEEEECCcCHH-HHHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchh
Confidence            34555554444 3367778888888876665431               133333346899999998655433   2334


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .++++++ .+++||.+||-|..+ |+.+
T Consensus        63 ~~~i~~~-~~~~PvLGIC~G~Ql-l~~~   88 (188)
T TIGR00566        63 LEAIRHF-AGKLPILGVCLGHQA-MGQA   88 (188)
T ss_pred             HHHHHHh-ccCCCEEEECHHHHH-HHHH
Confidence            7788877 678999999999877 6543

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.71  E-value=0.0061  Score=43.43  Aligned_cols=74  Identities=24%  Similarity=0.346  Sum_probs=50.1

Q ss_pred             eehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEE
Q 019238            3 AVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA   79 (344)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a   79 (344)
                      +..+.+.+++.++++.+++.... ....        .....+.+.-   ||.........++...+|++++.++|+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (92)
T cd03128          14 LASPLDALREAGAEVDVVSPDGG-PVES--------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLG   84 (92)
T ss_pred             eecHHHHHHhCCCEEEEEeCCCC-cccc--------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence            45678889999999999999863 3322        1111111111   4422222222478999999999999999999


Q ss_pred             EchhHH
Q 019238           80 ICVFLA   85 (344)
Q Consensus        80 iC~g~~   85 (344)
                      +|.|+.
T Consensus        85 ~~~g~~   90 (92)
T cd03128          85 ICLGAQ   90 (92)
T ss_pred             Eecccc
Confidence            999983

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK07567 glutamine amidotransferase; Provisional

Probab=96.70  E-value=0.0095  Score=52.76  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCe---EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~---v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      |+|+|+-.............+.|++.+..   ++++....+ .        .    ...+  ..+||.|||.||..+...
T Consensus         2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~----~~~~--~~~~dgvIi~Gg~~~~~d   66 (242)
T PRK07567          2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-P--------L----PDLD--LDDYSGVIVGGSPFNVSD   66 (242)
T ss_pred             CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-C--------C----CCCC--HhhccEEEEcCCCCcCCC
Confidence            45655554433222125567777777644   444333221 0        0    0112  267999999999533222


Q ss_pred             h--hcCH-------HHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 F--AKSK-------KLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l--~~~~-------~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .  ...+       .+.++++.....+++|.+||-|..+ |+.+
T Consensus        67 ~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Ql-la~a  109 (242)
T PRK07567         67 PAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGT-LGHH  109 (242)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHH-HHHH
Confidence            1  0111       2334555555899999999999876 7654

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=96.65  E-value=0.0097  Score=52.21  Aligned_cols=94  Identities=12%  Similarity=0.088  Sum_probs=61.9

Q ss_pred             CCeEEEEeCCCc--chhH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc-ch
Q 019238          160 SPQILVPIANGS--EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG-GA  235 (344)
Q Consensus       160 ~~~v~ill~~g~--~~~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~-~~  235 (344)
                      .+||+++-+-..  +..+ +....+.|++.|++++.+....               ...+.+  .+.|+|+|+||.. ..
T Consensus        31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l--~~ad~I~v~GGnt~~l   93 (233)
T PRK05282         31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAI--ENAEAIFVGGGNTFQL   93 (233)
T ss_pred             CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHH--hcCCEEEECCccHHHH
Confidence            467777776542  2222 3457888999998876553221               012233  5679999999942 12


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ........+.+.|++.+++|+++++.|+|+.+ ++.
T Consensus        94 ~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii-~~~  128 (233)
T PRK05282         94 LKQLYERGLLAPIREAVKNGTPYIGWSAGANV-AGP  128 (233)
T ss_pred             HHHHHHCCcHHHHHHHHHCCCEEEEECHHHHh-hhc
Confidence            22345556888999999999999999999643 554

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=96.65  E-value=0.0052  Score=52.63  Aligned_cols=75  Identities=24%  Similarity=0.216  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---hhcCHHHHHHHHHH
Q 019238          175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQ  251 (344)
Q Consensus       175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~  251 (344)
                      .+..+.+.|+..|++++++..+                   ++.  .++|.|++||+......   +.... ...+++++
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~   67 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELV   67 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHH
Confidence            4566778888888877665521                   122  56899999995221111   22222 33444778


Q ss_pred             HhcCCcEEEEcchhhhhhhhc
Q 019238          252 KESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       252 ~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+.+++|.++|.|..+ |+.+
T Consensus        68 ~~~~~pvlGiC~G~Ql-l~~~   87 (196)
T TIGR01855        68 VRLGKPVLGICLGMQL-LFER   87 (196)
T ss_pred             HhCCCCEEEECHHHHH-hhhc
Confidence            8899999999999766 8887

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.64  E-value=0.0069  Score=46.74  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=56.5

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--hHhhh
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFA  239 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~~~l~  239 (344)
                      +|+|.--+|.+...+......|+..- ++..++.+.   +.         +..++    .++|.||+|||...  +..+.
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~   63 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN   63 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence            35666667888888888888887643 333333221   00         11111    47899999998422  22332


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                       ... .+.|+++.++++++.+||.|+ . +|
T Consensus        64 -~~g-~~~i~~~v~~g~p~LGIClGA-y-~a   90 (114)
T cd03144          64 -GKG-NRRIRNFVRNGGNYLGICAGA-Y-LA   90 (114)
T ss_pred             -hhC-cHHHHHHHHCCCcEEEEecCc-c-ce
Confidence             333 788888889999999999995 4 55

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK05670 anthranilate synthase component II; Provisional

Probab=96.60  E-value=0.011  Score=50.36  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+.|.. +.-...+.+.|++.|++++++..+.. .              .+.....++|.||+.||.+.+..   ....
T Consensus         2 iliid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~-~--------------~~~~~~~~~dglIlsgGpg~~~d---~~~~   62 (189)
T PRK05670          2 ILLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEI-T--------------LEEIEALNPDAIVLSPGPGTPAE---AGIS   62 (189)
T ss_pred             EEEEECC-CchHHHHHHHHHHCCCcEEEEECCCC-C--------------HHHHHhCCCCEEEEcCCCCChHH---cchH
Confidence            3444433 33345678889999999988877531 0              11111235899999888654433   3345


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..+|++. .+++||.+||-|..+ |+.+
T Consensus        63 ~~~l~~~-~~~~PvLGIClG~Ql-la~a   88 (189)
T PRK05670         63 LELIREF-AGKVPILGVCLGHQA-IGEA   88 (189)
T ss_pred             HHHHHHh-cCCCCEEEECHHHHH-HHHH
Confidence            6777764 567999999999877 6543

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=96.56  E-value=0.0082  Score=51.09  Aligned_cols=79  Identities=22%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--------------hhcCHH
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--------------FAKSKK  243 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--------------l~~~~~  243 (344)
                      ...+.|+..|+...++..... .           + .+... ...+|.|++|||......              ...+..
T Consensus        23 ~~~~~l~~~G~~~~iv~~~~~-~-----------~-~~~~~-l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~   88 (189)
T cd01745          23 YYVDAVRKAGGLPVLLPPVDD-E-----------E-DLEQY-LELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAF   88 (189)
T ss_pred             HHHHHHHHCCCEEEEeCCCCC-h-----------H-HHHHH-HhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHH
Confidence            467788888887766654431 0           0 11111 156899999999532111              112234


Q ss_pred             HHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          244 LVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       244 l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..++++++.+.+++|.+||.|..+ |+.
T Consensus        89 ~~~~~~~~~~~~~PilgiC~G~Q~-l~~  115 (189)
T cd01745          89 ELALLRAALERGKPILGICRGMQL-LNV  115 (189)
T ss_pred             HHHHHHHHHHCCCCEEEEcchHHH-HHH
Confidence            578999999999999999999876 543

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.56  E-value=0.02  Score=48.97  Aligned_cols=76  Identities=20%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             HHHHHHHhcCCeE-EEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc--CHHHHHHHHHHHhc
Q 019238          178 IIIDILRRAKANV-VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQKES  254 (344)
Q Consensus       178 ~~~~~l~~~~~~v-~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~--~~~l~~~l~~~~~~  254 (344)
                      .+...++..|+.. ++...+.                .....+..++|.+||.||..+... ..  .+...+||++....
T Consensus        16 li~r~~re~g~v~~e~~~~~~----------------~~~~~~~~~~~giIlsGgp~sv~~-~~~w~~~~~~~i~~~~~p   78 (198)
T COG0518          16 LIARRLRELGYVYSEIVPYTG----------------DAEELPLDSPDGIIISGGPMSVYD-EDPWLPREKDLIKDAGVP   78 (198)
T ss_pred             HHHHHHHHcCCceEEEEeCCC----------------CcccccccCCCEEEEcCCCCCCcc-ccccchhHHHHHHHhCCC
Confidence            4456777788433 3333333                233333345699999999643222 33  67889999999999


Q ss_pred             CCcEEEEcchhhhhhhh
Q 019238          255 NRPYGAICASPALVLEP  271 (344)
Q Consensus       255 ~k~I~aic~G~~~lLa~  271 (344)
                      +++|.+||.|..+ +|.
T Consensus        79 ~~pvLGIC~G~Ql-~A~   94 (198)
T COG0518          79 GKPVLGICLGHQL-LAK   94 (198)
T ss_pred             CCCEEEEChhHHH-HHH
Confidence            9999999999877 664

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=96.55  E-value=0.0038  Score=52.88  Aligned_cols=72  Identities=17%  Similarity=0.142  Sum_probs=48.1

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchhh-hcccCChHHHHHHHHHhhCCCEEEEEchhH
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGA-TNLKESEVLESIVKKQASDGRLYAAICVFL   84 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~   84 (344)
                      ..+.|++.|+++.++++..  ......++-+.           ||.... ..+..+..+.++|+++.++|+++.+||.|.
T Consensus        14 ~~~~l~~~g~~~~~v~~~~--~l~~~d~liip-----------GG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~   80 (184)
T TIGR03800        14 HARALEALGVEGVEVKRPE--QLDEIDGLIIP-----------GGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL   80 (184)
T ss_pred             HHHHHHHCCCEEEEECChH--HhccCCEEEEC-----------CCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence            4577888888888887632  11111111111           553222 233455678899999999999999999999


Q ss_pred             HHHHHHc
Q 019238           85 AVALGSW   91 (344)
Q Consensus        85 ~~~La~a   91 (344)
                      . +|+++
T Consensus        81 q-lL~~~   86 (184)
T TIGR03800        81 I-MLAKE   86 (184)
T ss_pred             H-HHHhh
Confidence            5 99987

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=96.52  E-value=0.0056  Score=52.06  Aligned_cols=78  Identities=22%  Similarity=0.378  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (344)
Q Consensus       177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k  256 (344)
                      ..+...|++.|.+++++..... .           ....+  ...+||.++|+||......   .+...++++++.++++
T Consensus        11 ~~l~~~l~~~~~~~~v~~~~~~-~-----------~~~~~--~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~   73 (192)
T PF00117_consen   11 HSLVRALRELGIDVEVVRVDSD-F-----------EEPLE--DLDDYDGIIISGGPGSPYD---IEGLIELIREARERKI   73 (192)
T ss_dssp             HHHHHHHHHTTEEEEEEETTGG-H-----------HHHHH--HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCeEEEEECCCc-h-----------hhhhh--hhcCCCEEEECCcCCcccc---ccccccccccccccce
Confidence            4567888889988888876542 0           00011  2378999999999654332   4678888999889999


Q ss_pred             cEEEEcchhhhhhhhc
Q 019238          257 PYGAICASPALVLEPH  272 (344)
Q Consensus       257 ~I~aic~G~~~lLa~a  272 (344)
                      +|.+||-|..+ |+.+
T Consensus        74 PilGIC~G~Q~-la~~   88 (192)
T PF00117_consen   74 PILGICLGHQI-LAHA   88 (192)
T ss_dssp             EEEEETHHHHH-HHHH
T ss_pred             EEEEEeehhhh-hHHh
Confidence            99999999877 6643

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=96.46  E-value=0.011  Score=50.44  Aligned_cols=87  Identities=11%  Similarity=0.136  Sum_probs=58.5

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      |++-|.++..... ..+.|++.|+.+.++..+.+               .+......++|.+++-||...+.   ++...
T Consensus         2 il~id~~dsft~~-~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~---~~~~~   62 (193)
T PRK08857          2 LLMIDNYDSFTYN-LYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPN---EAGIS   62 (193)
T ss_pred             EEEEECCCCcHHH-HHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChH---HCcch
Confidence            4566666665543 78888999999988876632               11222123578999998864443   23345


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..+++. .++++||.+||-|..+ |+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIClG~Ql-ia~a   88 (193)
T PRK08857         63 LQAIEH-FAGKLPILGVCLGHQA-IAQV   88 (193)
T ss_pred             HHHHHH-hcCCCCEEEEcHHHHH-HHHH
Confidence            677766 5789999999999877 6653

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.42  E-value=0.0046  Score=53.08  Aligned_cols=74  Identities=28%  Similarity=0.330  Sum_probs=50.6

Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh--hcCHHHHHHHHHHHhc
Q 019238          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--AKSKKLVNMLKKQKES  254 (344)
Q Consensus       177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l--~~~~~l~~~l~~~~~~  254 (344)
                      ......|++.|++++++..                   .++.  .++|.||+||+.......  .....+.++|+++.+.
T Consensus        13 ~~~~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~   71 (199)
T PRK13181         13 RSVANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEK   71 (199)
T ss_pred             HHHHHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHC
Confidence            4455688888888776511                   1233  568999999963211211  1223467899999999


Q ss_pred             CCcEEEEcchhhhhhhhc
Q 019238          255 NRPYGAICASPALVLEPH  272 (344)
Q Consensus       255 ~k~I~aic~G~~~lLa~a  272 (344)
                      +++|.++|.|..+ |+.+
T Consensus        72 ~~PvlGiC~G~Ql-l~~~   88 (199)
T PRK13181         72 KQPVLGICLGMQL-LFES   88 (199)
T ss_pred             CCCEEEECHhHHH-hhhh
Confidence            9999999999765 8875

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=96.40  E-value=0.0091  Score=57.24  Aligned_cols=88  Identities=26%  Similarity=0.268  Sum_probs=60.3

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--Hhh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF  238 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~~l  238 (344)
                      .||+|.--.=|+. -+-.-.+.|+++ .++..+|+-..                 +..  +++|+|++|||....  ..+
T Consensus       234 ~~iavA~D~AF~F-yY~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L  292 (433)
T PRK13896        234 PTVAVARDAAFCF-RYPATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL  292 (433)
T ss_pred             CeEEEEEcCccce-eCHHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence            5888766543333 223356778777 78888887432                 122  468999999997432  224


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+... +-|+++.++|++|.++|.|-.+ |.+
T Consensus       293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q~-L~~  323 (433)
T PRK13896        293 ADSPAL-DELADRAADGLPVLGECGGLMA-LAE  323 (433)
T ss_pred             HhCCcH-HHHHHHHHCCCcEEEEehHHHH-hhc
Confidence            445445 8899999999999999999644 765

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.37  E-value=0.0044  Score=51.83  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCchhhh--cccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHH
Q 019238           49 CGMPGAT--NLKESEVLESIVKKQASDGRLYAAICVFLAVALGS   90 (344)
Q Consensus        49 gG~~~~~--~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~   90 (344)
                      || ....  .+.++..+.+.|+++.+ ++++.+||.|+ .+|++
T Consensus        47 GG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~-qlL~~   87 (179)
T PRK13526         47 GG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGS-IILSK   87 (179)
T ss_pred             CC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHH-HHHHc
Confidence            66 3333  45566779999999885 78999999999 59998

>CHL00101 trpG anthranilate synthase component 2

Probab=96.33  E-value=0.015  Score=49.47  Aligned_cols=87  Identities=13%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      |++.|..+... ..+.+.|+..|+++.++..+..               .+++....++|.|||-||.+.+.+   .+..
T Consensus         2 iliid~~dsft-~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~---~~~~   62 (190)
T CHL00101          2 ILIIDNYDSFT-YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRD---SGIS   62 (190)
T ss_pred             EEEEECCCchH-HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHH---Ccch
Confidence            34445444333 4477888998988876665431               122332246899999999655433   2222


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..++ +.+..++||.+||-|..+ |+.+
T Consensus        63 ~~i~-~~~~~~~PiLGIClG~Ql-la~~   88 (190)
T CHL00101         63 LDVI-SSYAPYIPILGVCLGHQS-IGYL   88 (190)
T ss_pred             HHHH-HHhcCCCcEEEEchhHHH-HHHH
Confidence            3333 456789999999999877 6653

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=96.33  E-value=0.016  Score=48.97  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (344)
Q Consensus       177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k  256 (344)
                      ..+.+.|++.|+++.++..+.. .            ....+.  .+||.||+.||.....   ++. ....+++...+++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~-~------------~~~~~~--~~~dgvil~gG~~~~~---~~~-~~~~i~~~~~~~~   72 (184)
T cd01743          12 YNLVQYLRELGAEVVVVRNDEI-T------------LEELEL--LNPDAIVISPGPGHPE---DAG-ISLEIIRALAGKV   72 (184)
T ss_pred             HHHHHHHHHcCCceEEEeCCCC-C------------HHHHhh--cCCCEEEECCCCCCcc---cch-hHHHHHHHHhcCC
Confidence            3466888889999988887652 1            011123  5799999977744322   222 3445555567789


Q ss_pred             cEEEEcchhhhhhhhc
Q 019238          257 PYGAICASPALVLEPH  272 (344)
Q Consensus       257 ~I~aic~G~~~lLa~a  272 (344)
                      ||.+||-|..+ |+.+
T Consensus        73 PvlGIC~G~Ql-la~~   87 (184)
T cd01743          73 PILGVCLGHQA-IAEA   87 (184)
T ss_pred             CEEEECHhHHH-HHHH
Confidence            99999999776 6654

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK05637 anthranilate synthase component II; Provisional

Probab=96.25  E-value=0.019  Score=49.58  Aligned_cols=88  Identities=17%  Similarity=0.267  Sum_probs=55.8

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      +||+++  |..+..- ..+.+.|++.|+.++++..+.                .+++....+||.||+-||.+.+..   
T Consensus         2 ~~il~i--D~~dsf~-~nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d---   59 (208)
T PRK05637          2 THVVLI--DNHDSFV-YNLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD---   59 (208)
T ss_pred             CEEEEE--ECCcCHH-HHHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH---
Confidence            454443  4333322 347888899999888776543                123332347899999888655433   


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .....++++... .++||.+||-|..+ |+.+
T Consensus        60 ~~~~~~li~~~~-~~~PiLGIClG~Ql-la~a   89 (208)
T PRK05637         60 AGNMMALIDRTL-GQIPLLGICLGFQA-LLEH   89 (208)
T ss_pred             hhHHHHHHHHHh-CCCCEEEEcHHHHH-HHHH
Confidence            223456666543 57999999999877 6654

>PRK05380 pyrG CTP synthetase; Validated

Probab=96.24  E-value=0.043  Score=53.50  Aligned_cols=146  Identities=18%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeee---cCCCCeEEEEe-CCCcchh
Q 019238           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWT---FDNSPQILVPI-ANGSEEM  174 (344)
Q Consensus        99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~v~ill-~~g~~~~  174 (344)
                      ..++|.+-...+..+.=+.+-++-.    .+.+.+.+.++...   ..+..-..+..+   .....+|+++= |-...+ 
T Consensus       231 ~~~vi~~~d~~~iy~vPl~l~~q~~----~~~i~~~l~l~~~~---~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~D-  302 (533)
T PRK05380        231 EEAVISAPDVDSIYEVPLLLHEQGL----DDIVLERLGLEAPE---PDLSEWEELVERLKNPKGEVTIALVGKYVELPD-  302 (533)
T ss_pred             HHHEEEcCCCccHHhhhHHHHHCCC----HHHHHHHcCCCCCC---CCHHHHHHHHHHHhCCCCceEEEEEeCccCCcH-
Confidence            3578888888877777777655544    44555555554211   111111111100   11245666554 223333 


Q ss_pred             HHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHH
Q 019238          175 EAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK  250 (344)
Q Consensus       175 e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~  250 (344)
                      .+..+.+.|..++    .++.+.-.+.. .+.        .+...+..  ..+|.|++|||++..    ..+..+.+++.
T Consensus       303 aY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~--------~~~~~~~L--~~~DGIIlpGGfG~~----~~~g~i~~i~~  367 (533)
T PRK05380        303 AYKSVIEALKHAGIANDVKVNIKWIDSE-DLE--------EENVAELL--KGVDGILVPGGFGER----GIEGKILAIRY  367 (533)
T ss_pred             HHHHHHHHHHHHHHHcCCeeEEEEEChh-hcc--------CcchhhHh--hcCCEEEecCCCCcc----ccccHHHHHHH
Confidence            3556778887775    34444444331 111        11112233  678999999997532    23356788999


Q ss_pred             HHhcCCcEEEEcchhhh
Q 019238          251 QKESNRPYGAICASPAL  267 (344)
Q Consensus       251 ~~~~~k~I~aic~G~~~  267 (344)
                      +.++++|+.+||-|..+
T Consensus       368 a~e~~iPiLGIClGmQl  384 (533)
T PRK05380        368 ARENNIPFLGICLGMQL  384 (533)
T ss_pred             HHHCCCcEEEEchHHHH
Confidence            99999999999999765

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=96.22  E-value=0.035  Score=52.29  Aligned_cols=87  Identities=22%  Similarity=0.236  Sum_probs=60.5

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      .+||+++=+ |+..    .+.+.|.+.|+++.++..+.                +.++....++|.|++.||.+.+..  
T Consensus       192 ~~~I~viD~-g~k~----ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~~--  248 (382)
T CHL00197        192 QLKIIVIDF-GVKY----NILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPSA--  248 (382)
T ss_pred             CCEEEEEEC-CcHH----HHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChhH--
Confidence            467776655 5542    37888888999988775432                123333347899999999654432  


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                       ....++.++++.+.+.||.+||-|..+ |+.
T Consensus       249 -~~~~i~~i~~~~~~~~PilGIClGhQl-La~  278 (382)
T CHL00197        249 -IHYGIKTVKKLLKYNIPIFGICMGHQI-LSL  278 (382)
T ss_pred             -HHHHHHHHHHHHhCCCCEEEEcHHHHH-HHH
Confidence             345677788877778999999999877 553

>PRK00758 GMP synthase subunit A; Validated

Probab=96.20  E-value=0.018  Score=48.64  Aligned_cols=68  Identities=22%  Similarity=0.353  Sum_probs=45.3

Q ss_pred             HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCc-cEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238          179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY-DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (344)
Q Consensus       179 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~-D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~  257 (344)
                      +.+.|++.|+++.++..+.                ..++.  .++ |.|+++||. ...   ....+.+|++   +.++|
T Consensus        15 i~~~l~~~g~~~~~~~~~~----------------~~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P   69 (184)
T PRK00758         15 IHRTLRYLGVDAKIIPNTT----------------PVEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP   69 (184)
T ss_pred             HHHHHHHcCCcEEEEECCC----------------CHHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence            4677888888776655432                12333  456 999999995 222   2234566776   45799


Q ss_pred             EEEEcchhhhhhhhc
Q 019238          258 YGAICASPALVLEPH  272 (344)
Q Consensus       258 I~aic~G~~~lLa~a  272 (344)
                      |.+||.|..+ |+.+
T Consensus        70 ilGIC~G~Q~-L~~a   83 (184)
T PRK00758         70 ILGICLGHQL-IAKA   83 (184)
T ss_pred             EEEEeHHHHH-HHHh
Confidence            9999999876 7654

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=96.19  E-value=0.017  Score=49.46  Aligned_cols=87  Identities=9%  Similarity=0.204  Sum_probs=57.5

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|..+.... .+.+.|++.|+++.++..+..               .+++....++|.||+.||...+..   ....
T Consensus         2 il~idn~dsft~-nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~---~~~~   62 (195)
T PRK07649          2 ILMIDNYDSFTF-NLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNE---AGIS   62 (195)
T ss_pred             EEEEeCCCccHH-HHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHh---CCCc
Confidence            455555555443 378889999999888775531               122332246899999999655443   2334


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...++. +..++||.+||-|..+ |+.+
T Consensus        63 ~~~i~~-~~~~~PvLGIClG~Ql-la~~   88 (195)
T PRK07649         63 MEVIRY-FAGKIPIFGVCLGHQS-IAQV   88 (195)
T ss_pred             hHHHHH-hcCCCCEEEEcHHHHH-HHHH
Confidence            566664 4578999999999877 6654

>PRK13566 anthranilate synthase; Provisional

Probab=96.16  E-value=0.035  Score=56.73  Aligned_cols=91  Identities=15%  Similarity=0.220  Sum_probs=64.6

Q ss_pred             CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ...++|+|+=+..   .-...+.+.|++.|+++.++.....             ...++   ..++|.||+.||.+.+. 
T Consensus       524 ~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~---~~~~DgVVLsgGpgsp~-  583 (720)
T PRK13566        524 GEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLD---RVNPDLVVLSPGPGRPS-  583 (720)
T ss_pred             CCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-------------hhHhh---hcCCCEEEECCCCCChh-
Confidence            4568887666652   3466788999999999988877542             00112   14689999977755433 


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                         +..+.++|++..++++||.+||-|..+ |+.+
T Consensus       584 ---d~~~~~lI~~a~~~~iPILGIClG~Ql-La~a  614 (720)
T PRK13566        584 ---DFDCKATIDAALARNLPIFGVCLGLQA-IVEA  614 (720)
T ss_pred             ---hCCcHHHHHHHHHCCCcEEEEehhHHH-HHHH
Confidence               234678999999999999999999877 6543

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.16  E-value=0.026  Score=47.96  Aligned_cols=83  Identities=20%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--hhc
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAK  240 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--l~~  240 (344)
                      |+|+=|..-+.   ......|++.|+++.++...                   +++  .++|.||+||+-.....  ..+
T Consensus         2 i~iidyg~gN~---~s~~~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~   57 (192)
T PRK13142          2 IVIVDYGLGNI---SNVKRAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK   57 (192)
T ss_pred             EEEEEcCCccH---HHHHHHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            66776664444   44566777777776654321                   333  46899999998321111  112


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...+.+.|++  ..+++|.+||.|..+ |++.
T Consensus        58 ~~gl~~~i~~--~~g~PvlGIClGmQl-L~~~   86 (192)
T PRK13142         58 RLNLNAILAK--NTDKKMIGICLGMQL-MYEH   86 (192)
T ss_pred             HCCcHHHHHH--hCCCeEEEECHHHHH-Hhhh
Confidence            2346777877  568999999999765 6643

>PLN02335 anthranilate synthase

Probab=96.13  E-value=0.029  Score=48.97  Aligned_cols=89  Identities=11%  Similarity=0.132  Sum_probs=57.7

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      .++|+|+  |..+... ..+.+.|++.|++++++..+..               .+++....++|.|||.||...+..  
T Consensus        18 ~~~ilvi--D~~dsft-~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d--   77 (222)
T PLN02335         18 NGPIIVI--DNYDSFT-YNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQD--   77 (222)
T ss_pred             cCcEEEE--ECCCCHH-HHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh--
Confidence            3577666  5433333 4578889999999988865421               123222246899999999665543  


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                       .....+++++ ....+||.+||-|..+ |+.
T Consensus        78 -~~~~~~~~~~-~~~~~PiLGIClG~Ql-La~  106 (222)
T PLN02335         78 -SGISLQTVLE-LGPLVPLFGVCMGLQC-IGE  106 (222)
T ss_pred             -ccchHHHHHH-hCCCCCEEEecHHHHH-HHH
Confidence             2234566654 4567999999999876 654

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=96.12  E-value=0.021  Score=48.03  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (344)
Q Consensus       177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k  256 (344)
                      ..+.+.|++.|+++.++..+.+                .++....+||.||++||...... ...+.+   .++..+.++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~~---~~~~~~~~~   71 (181)
T cd01742          12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPRV---DPEIFELGV   71 (181)
T ss_pred             HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccchh---hHHHHhcCC
Confidence            4467888888988877665431                11112367999999999542211 112233   344455699


Q ss_pred             cEEEEcchhhhhhhhc
Q 019238          257 PYGAICASPALVLEPH  272 (344)
Q Consensus       257 ~I~aic~G~~~lLa~a  272 (344)
                      ++.+||.|..+ |+.+
T Consensus        72 PilGIC~G~Ql-l~~~   86 (181)
T cd01742          72 PVLGICYGMQL-IAKA   86 (181)
T ss_pred             CEEEEcHHHHH-HHHh
Confidence            99999999876 6653

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=96.07  E-value=0.017  Score=56.41  Aligned_cols=50  Identities=14%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             CCccEEEEcCCccchHhh--hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAF--AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l--~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      +++|+|++|||......+  ..+..+.+.|+++.++|++|.++|.|-.+ |.+
T Consensus       283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~-Lg~  334 (475)
T TIGR00313       283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQM-LGK  334 (475)
T ss_pred             ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHH-hhh
Confidence            578999999997433332  24556889999999999999999999644 876

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.98  E-value=0.014  Score=50.52  Aligned_cols=84  Identities=18%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc---chHhhh
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---GAQAFA  239 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~---~~~~l~  239 (344)
                      |+|+=|..-   .+......++..++++.+++.                   .++.  .++|.||+||+-.   ....+.
T Consensus         2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~-------------------~~~l--~~~d~iIlPG~g~~~~~~~~l~   57 (210)
T PRK14004          2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSD-------------------PETI--ENSKALILPGDGHFDKAMENLN   57 (210)
T ss_pred             EEEEECCCc---hHHHHHHHHHHcCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence            455544422   445566667777666554422                   2333  5789999999842   222332


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       ...+.++|+++.+++++|.+||.|..+ |+++
T Consensus        58 -~~gl~~~i~~~~~~~~pilGiC~G~Q~-l~~~   88 (210)
T PRK14004         58 -STGLRSTIDKHVESGKPLFGICIGFQI-LFES   88 (210)
T ss_pred             -HcCcHHHHHHHHHcCCCEEEECHhHHH-HHHh
Confidence             335888999999999999999999766 7664

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.96  E-value=0.019  Score=55.78  Aligned_cols=46  Identities=17%  Similarity=0.279  Sum_probs=32.2

Q ss_pred             CCccEEEEcCCccc-hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          221 LSYDLIVLPGGLGG-AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       221 ~~~D~liipGG~~~-~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .++|.||+|||... ...+  ...+.+.|+++   |++|.+||.|-.+ |++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~Qm-Lg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQI-LSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHh-cccc
Confidence            67899999998411 1112  23556666665   8999999999655 8765

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=95.87  E-value=0.041  Score=51.49  Aligned_cols=85  Identities=24%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      ++|+++=+ |+.    ....+.|.+.|+++.++..+.                ++++.....+|.|++.||.+.+.   .
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~  229 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A  229 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence            46666644 554    247788888999887664332                13333223569999999965443   3


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .+..+++++++.+ ++||.+||-|..+ |+.
T Consensus       230 ~~~~i~~i~~~~~-~~PILGIClG~Ql-La~  258 (358)
T TIGR01368       230 VEPAIETIRKLLE-KIPIFGICLGHQL-LAL  258 (358)
T ss_pred             HHHHHHHHHHHHc-CCCEEEECHHHHH-HHH
Confidence            4567788888887 8999999999887 554

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=95.83  E-value=0.056  Score=50.51  Aligned_cols=86  Identities=23%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      .++|.++=+ |+    -..+.+.|.+.|+.+.++..+.                ..+++...++|.|+++||.+.+.   
T Consensus       167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIiLsgGPgdp~---  222 (354)
T PRK12838        167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDT----------------SLEEIKNLNPDGIVLSNGPGDPK---  222 (354)
T ss_pred             CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEEcCCCCChH---
Confidence            467665544 43    2457778888898887775442                12333224789999999965443   


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      +....+++++++.++ +||.+||-|..+ |+.
T Consensus       223 ~~~~~~~~i~~~~~~-~PvlGIClG~Ql-La~  252 (354)
T PRK12838        223 ELQPYLPEIKKLISS-YPILGICLGHQL-IAL  252 (354)
T ss_pred             HhHHHHHHHHHHhcC-CCEEEECHHHHH-HHH
Confidence            344567888888877 999999999877 653

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=95.74  E-value=0.064  Score=54.82  Aligned_cols=91  Identities=16%  Similarity=0.200  Sum_probs=63.1

Q ss_pred             CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ...++|+|+=+.   +.....+.+.|++.|+++.++.....             +..++ .  .++|.|||.||.+.+. 
T Consensus       514 ~~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~-~--~~~DgLILsgGPGsp~-  573 (717)
T TIGR01815       514 GEGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD-E--RRPDLVVLSPGPGRPA-  573 (717)
T ss_pred             CCCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh-h--cCCCEEEEcCCCCCch-
Confidence            346788877544   33456788999999999877765421             00111 1  4689999977754433 


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                         +....++|++..+.++||.+||-|..+ |+.+
T Consensus       574 ---d~~~~~~I~~~~~~~iPvLGICLG~Ql-La~a  604 (717)
T TIGR01815       574 ---DFDVAGTIDAALARGLPVFGVCLGLQG-MVEA  604 (717)
T ss_pred             ---hcccHHHHHHHHHCCCCEEEECHHHHH-Hhhh
Confidence               234577888888999999999999877 6654

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.72  E-value=0.066  Score=50.06  Aligned_cols=93  Identities=19%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhc---CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~---~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      |+|+|.--+|.....+...++.|++.   .|.+..++.+.           +..+ .+    ...++++|+|||..-...
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw----~~~~~LlV~PGG~d~~y~   64 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PW----QSKCALLVMPGGADLPYC   64 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-cc----ccCCcEEEECCCcchHHH
Confidence            67888888899999999999999864   35555443321           1111 11    146899999999532222


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      -.-+..-.+.||+|.++|+--.++|+|+ . +|.
T Consensus        65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGa-Y-~as   96 (367)
T PF09825_consen   65 RSLNGEGNRRIRQFVENGGGYLGICAGA-Y-YAS   96 (367)
T ss_pred             HhhChHHHHHHHHHHHcCCcEEEECcch-h-hhc
Confidence            2235556788999999899999999996 4 543

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.72  E-value=0.023  Score=55.13  Aligned_cols=70  Identities=26%  Similarity=0.370  Sum_probs=47.8

Q ss_pred             HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      +.|++.|.++..+++-...              .+.+++..   ||.+.  ...+..+..+.+.|+++.++|++|.++|.
T Consensus       265 ~~L~~~g~~~~~~~~~~~~--------------~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCg  330 (451)
T PRK01077        265 ELLRAAGAELVFFSPLADE--------------ALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECG  330 (451)
T ss_pred             HHHHHCCCEEEEeCCcCCC--------------CCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcH
Confidence            5566777777777763111              11122211   66544  35566788899999999999999999999


Q ss_pred             hHHHHHHHcC
Q 019238           83 FLAVALGSWG   92 (344)
Q Consensus        83 g~~~~La~aG   92 (344)
                      |.+ +|++.=
T Consensus       331 G~~-~L~~~i  339 (451)
T PRK01077        331 GLM-YLGESL  339 (451)
T ss_pred             HHH-HHHhhh
Confidence            995 777653

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=95.68  E-value=0.06  Score=46.30  Aligned_cols=82  Identities=18%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             HHHHHhCCCeEEEEEecCCccee-cCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238            7 IDVLRRSGADVVVASVEKQLRVD-ACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLA   85 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~-~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~   85 (344)
                      +..|+++|++...|-.+.. ... ...++-+.---+..|... .|.  .   ..-+.+++-++++.++|+++.+||.|--
T Consensus        20 ~~A~~~aG~~~~~V~~~d~-~~~~~~d~vv~pGGFSyGDyLr-~Ga--i---aa~~~v~~~v~~~a~~g~~vLGICNGfQ   92 (231)
T COG0047          20 AAAFERAGFEAEDVWHSDL-LLGRDFDGVVLPGGFSYGDYLR-AGA--I---AAIAPVMDEVREFAEKGKPVLGICNGFQ   92 (231)
T ss_pred             HHHHHHcCCCceEEEeeec-ccCCCccEEEEcCCCCcccccC-cch--H---HhhHHHHHHHHHHHHCCCeEEEEcchhH
Confidence            4556788998888887742 111 123333332222222222 221  1   1227888999999999999999999995


Q ss_pred             HHHHHcCCCCC
Q 019238           86 VALGSWGLLKG   96 (344)
Q Consensus        86 ~~La~aGll~g   96 (344)
                       +|.++|||-|
T Consensus        93 -iL~e~gLlPG  102 (231)
T COG0047          93 -ILSEAGLLPG  102 (231)
T ss_pred             -HHHHcCcCCc
Confidence             9999999975

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=95.65  E-value=0.023  Score=50.66  Aligned_cols=89  Identities=19%  Similarity=0.258  Sum_probs=55.8

Q ss_pred             hHHHHHhCCCeEEEEEecC----CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhC-CCEEEEE
Q 019238            6 TIDVLRRSGADVVVASVEK----QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASD-GRLYAAI   80 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~----~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~-g~~i~ai   80 (344)
                      .+..|+++|+++..|..+.    ........++-+.--.+..|... +|-.....+..++.+.+.|++|.++ |+++.+|
T Consensus        18 ~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~-sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGI   96 (259)
T PF13507_consen   18 TAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLR-SGAIAAARLLFNSPLMDAIREFLERPGGFVLGI   96 (259)
T ss_dssp             HHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTS-TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEE
T ss_pred             HHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccch-HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEE
Confidence            3556789999999987652    11222333444433333322221 3322333455578889999999999 9999999


Q ss_pred             chhHHHHHHHcCCCCC
Q 019238           81 CVFLAVALGSWGLLKG   96 (344)
Q Consensus        81 C~g~~~~La~aGll~g   96 (344)
                      |.|- -+|.++|||.+
T Consensus        97 cNGf-QiL~~~Gllp~  111 (259)
T PF13507_consen   97 CNGF-QILVELGLLPG  111 (259)
T ss_dssp             CHHH-HHHCCCCCSTT
T ss_pred             chHh-HHHHHhCcCCC
Confidence            9999 59999999965

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=95.64  E-value=0.021  Score=56.27  Aligned_cols=89  Identities=15%  Similarity=0.244  Sum_probs=59.5

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-  237 (344)
                      ..++|+|+=|-.=+..+   ....|+..|+++.++..                   .+++  .++|.||+||+-..... 
T Consensus         5 ~~~~i~iiDyG~GN~~s---l~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m   60 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRS---VRNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAM   60 (538)
T ss_pred             CCCeEEEEECCCCCHHH---HHHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHH
Confidence            35788876665434433   56777788887755431                   1233  57899999996321111 


Q ss_pred             -hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 -FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 -l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       ...+..+.+.|+++.+.++|+.+||.|..+ |+.+
T Consensus        61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Ql-La~~   95 (538)
T PLN02617         61 DVLNNRGMAEALREYIQNDRPFLGICLGLQL-LFES   95 (538)
T ss_pred             HHHHHcCHHHHHHHHHHcCCCEEEECHHHHH-Hhhh
Confidence             123335788899999999999999999776 8864

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.57  E-value=0.029  Score=48.20  Aligned_cols=74  Identities=19%  Similarity=0.228  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---hhcCHHHHHHHHHH-
Q 019238          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQ-  251 (344)
Q Consensus       176 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~-  251 (344)
                      +..+.+.|++.|+++.++...                   ++.  .++|.||+||+-.....   +... .+...|+++ 
T Consensus        12 ~~~v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~   69 (201)
T PRK13152         12 LNSVAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQV   69 (201)
T ss_pred             HHHHHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHH
Confidence            344567777777776553321                   223  46899999997431111   1111 234555554 


Q ss_pred             HhcCCcEEEEcchhhhhhhhc
Q 019238          252 KESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       252 ~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ++++++|.+||.|..+ |+.+
T Consensus        70 ~~~~~pvlGiC~G~Q~-l~~~   89 (201)
T PRK13152         70 LVQKKPILGICLGMQL-FLER   89 (201)
T ss_pred             HhCCCcEEEECHhHHH-Hhhc
Confidence            5789999999999765 8876

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.43  E-value=0.021  Score=49.04  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             hhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC   81 (344)
Q Consensus         5 ~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (344)
                      ...+.|+++|+++.+++..  .              .+++.+-.   ||......+...+.+.++|+++.++++++.+||
T Consensus        15 ~~~~~l~~~G~~~~~~~~~--~--------------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC   78 (200)
T PRK13143         15 SVSKALERAGAEVVITSDP--E--------------EILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGIC   78 (200)
T ss_pred             HHHHHHHHCCCeEEEECCH--H--------------HHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            3466788889988887521  0              11222211   321112223445678899999999999999999


Q ss_pred             hhHHHHHHHcC
Q 019238           82 VFLAVALGSWG   92 (344)
Q Consensus        82 ~g~~~~La~aG   92 (344)
                      .|.. +|+++.
T Consensus        79 ~G~q-~l~~~~   88 (200)
T PRK13143         79 LGMQ-LLFESS   88 (200)
T ss_pred             HHHH-HHhhhh
Confidence            9996 999864

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=95.43  E-value=0.039  Score=47.32  Aligned_cols=69  Identities=20%  Similarity=0.248  Sum_probs=44.7

Q ss_pred             HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhh-hcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238            8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAICVF   83 (344)
Q Consensus         8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC~g   83 (344)
                      +.|++.|++++++.....              ..+.+.+..   ||.... ..+..+..+.++|+++.++++++.+||.|
T Consensus        21 ~~l~~~g~~~~~~~~~~~--------------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G   86 (200)
T PRK13527         21 RALDELGIDGEVVEVRRP--------------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAG   86 (200)
T ss_pred             HHHHhcCCCeEEEEeCCh--------------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHH
Confidence            456677887777766521              011222211   553221 12334556899999999999999999999


Q ss_pred             HHHHHHHc
Q 019238           84 LAVALGSW   91 (344)
Q Consensus        84 ~~~~La~a   91 (344)
                      .. +|+++
T Consensus        87 ~Q-ll~~~   93 (200)
T PRK13527         87 LI-LLAKE   93 (200)
T ss_pred             HH-HHHhh
Confidence            95 99987

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=95.41  E-value=0.032  Score=47.44  Aligned_cols=34  Identities=15%  Similarity=0.046  Sum_probs=28.6

Q ss_pred             ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      +..+..+.++++++.++|+++.+||.|.. +|+++
T Consensus        55 ~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~   88 (189)
T PRK13525         55 LLRDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE   88 (189)
T ss_pred             HHHhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            34456678999999999999999999995 88864

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=95.08  E-value=0.04  Score=47.07  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchhhhccc--CChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238            8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLK--ESEVLESIVKKQASDGRLYAAICVFLA   85 (344)
Q Consensus         8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~--~~~~~~~~l~~~~~~g~~i~aiC~g~~   85 (344)
                      ..+++.|++++++++..+  +....++-+.           ||......+.  ++..+.+.|+++.++|+++.+||.|..
T Consensus        17 ~~~~~~G~~~~~~~~~~~--~~~~d~lilp-----------Gg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~q   83 (194)
T cd01750          17 PLAREPGVDVRYVEVPEG--LGDADLIILP-----------GSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQ   83 (194)
T ss_pred             HHHhcCCceEEEEeCCCC--CCCCCEEEEC-----------CCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHH
Confidence            345667888888887742  1111111111           4432222222  245688999999999999999999995


Q ss_pred             HHHHHcCC
Q 019238           86 VALGSWGL   93 (344)
Q Consensus        86 ~~La~aGl   93 (344)
                       +|++.-.
T Consensus        84 -lL~~~~~   90 (194)
T cd01750          84 -MLGKYIV   90 (194)
T ss_pred             -Hhhhhcc
Confidence             8887654

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>TIGR00337 PyrG CTP synthase

Probab=94.49  E-value=0.35  Score=47.34  Aligned_cols=145  Identities=18%  Similarity=0.264  Sum_probs=80.8

Q ss_pred             CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeee---cCCCCeEEEEe-CCCcchh
Q 019238           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWT---FDNSPQILVPI-ANGSEEM  174 (344)
Q Consensus        99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~v~ill-~~g~~~~  174 (344)
                      ..++|.+-...+..+.=+.+-++    ...+.+.+.+.++... .+  +.+-..+..+   .....+|+++- |....+ 
T Consensus       232 ~~~vi~~~d~~~iY~vPl~l~~q----~~~~~i~~~l~l~~~~-~~--~~~W~~~~~~~~~~~~~v~IalVGKY~~~~d-  303 (525)
T TIGR00337       232 EEAVINAHDVSSIYEVPLLLLKQ----GLDDYLCRRLNLNCDE-AD--LSEWEELVEKFINPKHEVTIGIVGKYVELKD-  303 (525)
T ss_pred             HHHEEEcCCCccHhhhhHHHHHC----ChHHHHHHHhCCCCCC-Cc--HHHHHHHHHHhhCCCCCcEEEEEeCCcCCHH-
Confidence            35788888888766666666554    3445555666554211 01  1111111111   12346777665 323322 


Q ss_pred             HHHHHHHHHHhcCC----eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHH
Q 019238          175 EAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK  250 (344)
Q Consensus       175 e~~~~~~~l~~~~~----~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~  250 (344)
                      .+..+.+.|..+++    ++.+...+.. .+.        .. ..+..  .++|.|++|||.+..    ..+..+..++.
T Consensus       304 aY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~--------~~-~~~~L--~~~dGIiLpGG~G~~----~~~g~i~ai~~  367 (525)
T TIGR00337       304 SYLSVIEALKHAGAKLDTKVNIKWIDSE-DLE--------EE-GAEFL--KGVDGILVPGGFGER----GVEGKILAIKY  367 (525)
T ss_pred             HHHHHHHHHHhCccccCCEEEEEEecHH-Hhh--------hh-hhhhh--cCCCEEEeCCCCCCh----hhcChHHHHHH
Confidence            45678888888875    2332222221 110        00 01112  568999999997532    23345567788


Q ss_pred             HHhcCCcEEEEcchhhh
Q 019238          251 QKESNRPYGAICASPAL  267 (344)
Q Consensus       251 ~~~~~k~I~aic~G~~~  267 (344)
                      +.+++.|+.+||-|..+
T Consensus       368 a~e~~iP~LGIClG~Ql  384 (525)
T TIGR00337       368 ARENNIPFLGICLGMQL  384 (525)
T ss_pred             HHHcCCCEEEEcHHHHH
Confidence            88899999999999755

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PLN02327 CTP synthase

Probab=94.46  E-value=0.27  Score=48.28  Aligned_cols=155  Identities=15%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccc-cCCCcceeeeccceeee---cCCCCeEEEEe-CCCcch
Q 019238           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRA-NHGDEFTIAEFNPVQWT---FDNSPQILVPI-ANGSEE  173 (344)
Q Consensus        99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~-~~~~~~~l~~~~~~~~~---~~~~~~v~ill-~~g~~~  173 (344)
                      ..++|.+-...+..+.=+.+-++-    ..+.+.+.+.++. .+..  .+..-..+..+   .....+|+++- |-...+
T Consensus       238 ~~~Vi~~~d~~~iY~vPl~l~~q~----l~~~i~~~l~l~~~~~~~--~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~D  311 (557)
T PLN02327        238 AENILNLHDVSNIWHVPLLLRDQK----AHEAILKVLNLLSVAREP--DLEEWTARAESCDNLTEPVRIAMVGKYTGLSD  311 (557)
T ss_pred             HHHEEEcCCCchHhhhhHHHHHCC----cHHHHHHHcCCCCCCCCC--ChHHHHHHHHHHhCCCCceEEEEEecccCCcH
Confidence            357888888877666666665553    4455566665542 1111  11111111101   12346777655 223333


Q ss_pred             hHHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeee---ccccccccCCCccEEEEcCCccchHhhhcCHHHHH
Q 019238          174 MEAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVA---DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN  246 (344)
Q Consensus       174 ~e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~---~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~  246 (344)
                       .+..+.+.|..++    .++++.-.+.. .+.. .+..-.|   +..++..  .++|.|++|||.+..    .....+.
T Consensus       312 -AY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~-~~~~~~~~~y~~~~~~L--~~~DGIvvpGGfG~~----~~~G~i~  382 (557)
T PLN02327        312 -SYLSVLKALLHASVACSRKLVIDWVAAS-DLED-ETAKETPDAYAAAWKLL--KGADGILVPGGFGDR----GVEGKIL  382 (557)
T ss_pred             -hHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCC-cccccccchhhhhHHhh--ccCCEEEeCCCCCCc----ccccHHH
Confidence             3456677777664    44444333321 1111 0100001   1112233  789999999996432    2234466


Q ss_pred             HHHHHHhcCCcEEEEcchhhhh
Q 019238          247 MLKKQKESNRPYGAICASPALV  268 (344)
Q Consensus       247 ~l~~~~~~~k~I~aic~G~~~l  268 (344)
                      .++.+.++++|+.+||-|..++
T Consensus       383 ai~~are~~iP~LGIClGmQl~  404 (557)
T PLN02327        383 AAKYARENKVPYLGICLGMQIA  404 (557)
T ss_pred             HHHHHHHcCCCEEEEcHHHHHH
Confidence            7788888999999999997663

>PRK08250 glutamine amidotransferase; Provisional

Probab=94.46  E-value=0.14  Score=45.19  Aligned_cols=30  Identities=10%  Similarity=0.316  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      ....+||+++.+.++++.+||.|.. +|+++
T Consensus        71 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  100 (235)
T PRK08250         71 KAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA  100 (235)
T ss_pred             HHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            3668999999999999999999995 88876

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=94.42  E-value=0.15  Score=48.41  Aligned_cols=76  Identities=22%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcC
Q 019238          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN  255 (344)
Q Consensus       176 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~  255 (344)
                      -..+.+.|++.|+++.++..+.                ..+++...++|.|++-||.+.+..   .+...+.+++.. ..
T Consensus       251 K~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~~---~~~~ie~ik~l~-~~  310 (415)
T PLN02771        251 KHNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPSA---VPYAVETVKELL-GK  310 (415)
T ss_pred             HHHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChhH---hhHHHHHHHHHH-hC
Confidence            3667888888999988775543                133333357899999999654433   355677777766 47


Q ss_pred             CcEEEEcchhhhhhhhc
Q 019238          256 RPYGAICASPALVLEPH  272 (344)
Q Consensus       256 k~I~aic~G~~~lLa~a  272 (344)
                      +||.+||-|..+ |+.+
T Consensus       311 iPIlGICLGhQl-La~A  326 (415)
T PLN02771        311 VPVFGICMGHQL-LGQA  326 (415)
T ss_pred             CCEEEEcHHHHH-HHHh
Confidence            899999999877 6654

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.37  E-value=0.29  Score=41.20  Aligned_cols=85  Identities=16%  Similarity=0.293  Sum_probs=57.8

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|+++..- ..+.+.|+..|.++.++-.+.-               +....+..++|.|+|--|.+.+.   +....
T Consensus         4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d~G~~   64 (191)
T COG0512           4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---DAGIS   64 (191)
T ss_pred             EEEEECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---HcchH
Confidence            45556666554 4468888988877766655421               12233345789999976655443   45567


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      .+.|+++ ....||.++|-|-.. ++
T Consensus        65 ~~~i~~~-~~~~PiLGVCLGHQa-i~   88 (191)
T COG0512          65 LELIRRF-AGRIPILGVCLGHQA-IA   88 (191)
T ss_pred             HHHHHHh-cCCCCEEEECccHHH-HH
Confidence            8899988 667899999999765 55

>PLN02347 GMP synthetase

Probab=94.05  E-value=0.2  Score=49.63  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      .+|+|+=+..-.   ...+...++..|+.+.++..+.                +.+++...++|.||++||...... ..
T Consensus        11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~~-~~   70 (536)
T PLN02347         11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVHV-EG   70 (536)
T ss_pred             CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCcccc-cC
Confidence            356555443222   2345778888888777665443                234443347899999999543321 12


Q ss_pred             CHHHH-HHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLV-NMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~-~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .+.+. .+++...+.++||.+||-|..+ |+.+
T Consensus        71 ~p~~~~~i~~~~~~~~iPILGIClG~Ql-La~a  102 (536)
T PLN02347         71 APTVPEGFFDYCRERGVPVLGICYGMQL-IVQK  102 (536)
T ss_pred             CchhhHHHHHHHHhcCCcEEEECHHHHH-HHHH
Confidence            22222 2333334578999999999877 6653

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.71  E-value=0.085  Score=43.19  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=52.2

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHhhhcCHHHHHHHHHHHhcCC
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAFAKSKKLVNMLKKQKESNR  256 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~l~~~~~l~~~l~~~~~~~k  256 (344)
                      ...+.|++.|++++.+..... .          .....+.+  .+.|+|++.||... .....++..+.+.|++.+++|+
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~   70 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGG   70 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCC
Confidence            467889999998877666542 1          01123333  56899999999421 1123455668999999999999


Q ss_pred             cEEEEcchhhhhhhhc
Q 019238          257 PYGAICASPALVLEPH  272 (344)
Q Consensus       257 ~I~aic~G~~~lLa~a  272 (344)
                      ++++..+|+.+ +...
T Consensus        71 vi~G~SAGA~i-~~~~   85 (154)
T PF03575_consen   71 VIIGTSAGAMI-LGPS   85 (154)
T ss_dssp             EEEEETHHHHC-TSSB
T ss_pred             EEEEEChHHhh-ccCc
Confidence            99999999644 5443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=93.68  E-value=0.41  Score=41.30  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             CCeEEEEeCCCcchhH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHh
Q 019238          160 SPQILVPIANGSEEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~  237 (344)
                      ..||+++-.......+ .....+.|++.|++...+....  .        -......+.+  .+.|+|+++||... ...
T Consensus        29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--~--------~~~~~~~~~l--~~ad~I~~~GG~~~~~~~   96 (210)
T cd03129          29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--T--------ANDPDVVARL--LEADGIFVGGGNQLRLLS   96 (210)
T ss_pred             CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--C--------CCCHHHHHHH--hhCCEEEEcCCcHHHHHH
Confidence            4678887766544333 3456788888888766544322  0        0001112233  67899999999421 111


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ......+.+.|++.+.+|.++++.|.|+.+ +...
T Consensus        97 ~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~-~~~~  130 (210)
T cd03129          97 VLRETPLLDAILKRVARGVVIGGTSAGAAV-MGET  130 (210)
T ss_pred             HHHhCChHHHHHHHHHcCCeEEEcCHHHHH-hhhc
Confidence            233334666667777799999999999755 7663

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=93.55  E-value=0.19  Score=49.88  Aligned_cols=87  Identities=14%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCe-EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKK  243 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~-v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~  243 (344)
                      ||+-|.++..-.. +.+.|++.|.+ +.++.+..-               .+++....++|.||+.||...+.+   +..
T Consensus         2 il~idn~dsft~n-l~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~---~~~   62 (534)
T PRK14607          2 IILIDNYDSFTYN-IYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEE---AGI   62 (534)
T ss_pred             EEEEECchhHHHH-HHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhh---CCc
Confidence            4566666665544 78888888875 555444321               133333356899999999765543   334


Q ss_pred             HHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          244 LVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       244 l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..++++.+ ..++||.+||-|..+ |+.+
T Consensus        63 ~~~li~~~-~~~~PvLGIClG~Ql-La~a   89 (534)
T PRK14607         63 SVEVIRHF-SGKVPILGVCLGHQA-IGYA   89 (534)
T ss_pred             cHHHHHHh-hcCCCEEEEcHHHHH-HHHH
Confidence            56777764 678999999999876 6543

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=93.52  E-value=0.075  Score=45.78  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      +.+.++|+++.++++++.+||.|.. +|++.
T Consensus        59 ~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~   88 (205)
T PRK13141         59 RGLDEVIKEAVASGKPLLGICLGMQ-LLFES   88 (205)
T ss_pred             cChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence            3578899999999999999999996 99986

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=93.49  E-value=0.37  Score=47.69  Aligned_cols=90  Identities=20%  Similarity=0.226  Sum_probs=55.7

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|.++... ..+.+.|+..|+++.++..+-  +          .+..+++....++|.||+-||.+.+.+....   
T Consensus         4 iLiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~---   67 (531)
T PRK09522          4 ILLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGCM---   67 (531)
T ss_pred             EEEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCCC---
Confidence            34555555544 347788899998888877542  1          1123444433467899999986655432222   


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       .++.+....++||.+||-|..+ |+.+
T Consensus        68 -~~i~~~~~~~iPILGIClG~Ql-La~a   93 (531)
T PRK09522         68 -PELLTRLRGKLPIIGICLGHQA-IVEA   93 (531)
T ss_pred             -HHHHHHHhcCCCEEEEcHHHHH-HHHh
Confidence             2333334568999999999877 6653

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=93.39  E-value=0.37  Score=43.51  Aligned_cols=79  Identities=22%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---hhcCHHHHHHHHHHHhc
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQKES  254 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~~~~  254 (344)
                      ...+.+.++|.++..+-.+..             ...+++. ...+|.|++|||......   ......++++..+..++
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~   89 (273)
T cd01747          24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA   89 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence            356777788887665444321             1123331 157899999999432221   11223344444444444


Q ss_pred             C--CcEEEEcchhhhhhhh
Q 019238          255 N--RPYGAICASPALVLEP  271 (344)
Q Consensus       255 ~--k~I~aic~G~~~lLa~  271 (344)
                      |  .||.++|-|..+ |+.
T Consensus        90 g~~~Pv~GiClG~Ql-L~~  107 (273)
T cd01747          90 GDYFPVWGTCLGFEL-LTY  107 (273)
T ss_pred             CCCCcEEEEcHHHHH-HHH
Confidence            4  799999999755 544

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=93.32  E-value=0.15  Score=43.03  Aligned_cols=70  Identities=17%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh-hhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      .+.|++.++++..+++..  .              +++++-.   ||... ......+..+.++|+++.++|+++.+||.
T Consensus        14 ~~~l~~~g~~v~~v~~~~--~--------------l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~   77 (183)
T cd01749          14 IRALERLGVEVIEVRTPE--D--------------LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCA   77 (183)
T ss_pred             HHHHHHCCCeEEEECCHH--H--------------hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECH
Confidence            367888888888887742  1              2222211   54222 12223445678999999999999999999


Q ss_pred             hHHHHHHHcCC
Q 019238           83 FLAVALGSWGL   93 (344)
Q Consensus        83 g~~~~La~aGl   93 (344)
                      |.. +|+++--
T Consensus        78 G~q-lL~~~~~   87 (183)
T cd01749          78 GLI-LLAKEVE   87 (183)
T ss_pred             HHH-HHHHHhc
Confidence            995 8887654

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=93.13  E-value=0.33  Score=44.70  Aligned_cols=75  Identities=23%  Similarity=0.255  Sum_probs=57.4

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~  257 (344)
                      .++..|...|+++.++..+-                +.+++...++|.|++.-|.+.+..   -+..++.|++.....+|
T Consensus       192 nIlr~L~~rg~~vtVVP~~t----------------~~eeIl~~~pDGiflSNGPGDP~~---~~~~i~~ik~l~~~~iP  252 (368)
T COG0505         192 NILRELVKRGCRVTVVPADT----------------SAEEILALNPDGIFLSNGPGDPAP---LDYAIETIKELLGTKIP  252 (368)
T ss_pred             HHHHHHHHCCCeEEEEcCCC----------------CHHHHHhhCCCEEEEeCCCCChhH---HHHHHHHHHHHhccCCC
Confidence            45677778888887765543                356665578999999988766533   45678899999998889


Q ss_pred             EEEEcchhhhhhhhc
Q 019238          258 YGAICASPALVLEPH  272 (344)
Q Consensus       258 I~aic~G~~~lLa~a  272 (344)
                      |++||-|-.+ ||.|
T Consensus       253 ifGICLGHQl-lalA  266 (368)
T COG0505         253 IFGICLGHQL-LALA  266 (368)
T ss_pred             eEEEcHHHHH-HHHh
Confidence            9999999877 7654

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=93.11  E-value=0.14  Score=45.15  Aligned_cols=44  Identities=30%  Similarity=0.462  Sum_probs=35.1

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV  268 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~l  268 (344)
                      .++|.|+++||....    ..+..++++++..+.++|+.+||.|..++
T Consensus        54 ~~~dgivl~GG~~~~----~~~~~~~~i~~~~~~~~PvlGIClG~Q~l   97 (235)
T cd01746          54 KGADGILVPGGFGIR----GVEGKILAIKYARENNIPFLGICLGMQLA   97 (235)
T ss_pred             ccCCEEEECCCCCCc----chhhHHHHHHHHHHCCceEEEEEhHHHHH
Confidence            679999999995422    23456788999999999999999998663

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=92.97  E-value=0.14  Score=45.78  Aligned_cols=51  Identities=24%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             CCccEEEEcCCccchH-------------hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          221 LSYDLIVLPGGLGGAQ-------------AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       221 ~~~D~liipGG~~~~~-------------~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +.+|.|+++||..+.+             ...++...+++|+.++++++||.+||-|..+ |+.+
T Consensus        60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Ql-lnva  123 (254)
T PRK11366         60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQE-LVVA  123 (254)
T ss_pred             HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHH-HHHH
Confidence            4589999999832221             1112345679999999999999999999877 5543

>PRK00074 guaA GMP synthase; Reviewed

Probab=92.88  E-value=0.53  Score=46.50  Aligned_cols=88  Identities=18%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      +.+|+|+=+ |..-.  ..+...+++.|...+++..+..                .+++...++|.||++||...... .
T Consensus         3 ~~~i~vlD~-Gsq~~--~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~   62 (511)
T PRK00074          3 HDKILILDF-GSQYT--QLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-E   62 (511)
T ss_pred             CCEEEEEEC-CCCcH--HHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-C
Confidence            356776666 33332  3456888888987777654431                23332235699999999543222 1


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+.+   .+...+.++||.+||.|..+ |+.
T Consensus        63 ~~p~~---~~~i~~~~~PvLGIC~G~Ql-La~   90 (511)
T PRK00074         63 GAPRA---DPEIFELGVPVLGICYGMQL-MAH   90 (511)
T ss_pred             CCccc---cHHHHhCCCCEEEECHHHHH-HHH
Confidence            12222   24456679999999999776 654

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=92.87  E-value=0.51  Score=43.06  Aligned_cols=109  Identities=14%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CCCeEEEEeC-CCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceee-eccceeeeeccccccccCCCccEEEEcCCccc
Q 019238          159 NSPQILVPIA-NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG  234 (344)
Q Consensus       159 ~~~~v~ill~-~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~  234 (344)
                      ++.||+||=. |.-...| ..+...|....  ++++++....- ..+ ++....-.--.+++++....||++||.|....
T Consensus        34 rpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e  111 (302)
T PRK05368         34 RPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVE  111 (302)
T ss_pred             CCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCC
Confidence            4688888854 4445555 44566665544  44666655431 111 11111111123567776688999999997432


Q ss_pred             hHhhhcC---HHHHHHHHHHHhcCCcEEEEcchhhhhh
Q 019238          235 AQAFAKS---KKLVNMLKKQKESNRPYGAICASPALVL  269 (344)
Q Consensus       235 ~~~l~~~---~~l~~~l~~~~~~~k~I~aic~G~~~lL  269 (344)
                      .....+.   +++.++++...++.+++.+||-|..+++
T Consensus       112 ~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a  149 (302)
T PRK05368        112 QLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAAL  149 (302)
T ss_pred             CccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            1111111   1234444444456899999999977644

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=92.67  E-value=0.52  Score=40.31  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             CCeEEEEeCCCcchhH---HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238          160 SPQILVPIANGSEEME---AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e---~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      .++|+++-+-+.+...   +....++|...|+.+.-++.... +           ...+++. ..+-|+|+|.||- .-.
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~-----------~~~Ie~~-l~~~d~IyVgGGN-TF~   97 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-P-----------LAAIENK-LMKADIIYVGGGN-TFN   97 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-C-----------HHHHHHh-hhhccEEEECCch-HHH
Confidence            4688888776554333   34667889999998876666542 1           1122221 1347999999982 222


Q ss_pred             h--hhcCHHHHHHHHHHHhcCCcEEEEcchhh
Q 019238          237 A--FAKSKKLVNMLKKQKESNRPYGAICASPA  266 (344)
Q Consensus       237 ~--l~~~~~l~~~l~~~~~~~k~I~aic~G~~  266 (344)
                      -  ......+.+.|++..++|.+.++..+|+.
T Consensus        98 LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~  129 (224)
T COG3340          98 LLQELKETGLDDIIRERVKAGTPYIGWSAGAN  129 (224)
T ss_pred             HHHHHHHhCcHHHHHHHHHcCCceEEeccCce
Confidence            2  34566789999999999999999999963

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=92.61  E-value=0.17  Score=43.28  Aligned_cols=68  Identities=22%  Similarity=0.310  Sum_probs=45.1

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CC-chhhh--cccCChHHHHHHHHHhhCCCEEEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CG-MPGAT--NLKESEVLESIVKKQASDGRLYAA   79 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG-~~~~~--~~~~~~~~~~~l~~~~~~g~~i~a   79 (344)
                      ..+.|++.|++++++....  .              +++.+..   || .+...  .+ ..+.+.++++++.++++++.+
T Consensus        14 ~~~~l~~~g~~v~v~~~~~--~--------------l~~~d~iiipG~~~~~~~~~~~-~~~~~~~~i~~~~~~~~pilG   76 (198)
T cd01748          14 VANALERLGAEVIITSDPE--E--------------ILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIASGKPFLG   76 (198)
T ss_pred             HHHHHHHCCCeEEEEcChH--H--------------hccCCEEEECCCCcHHHHHHHH-HHcChHHHHHHHHHCCCcEEE
Confidence            4567888999999887431  1              1222111   32 11111  12 234578999999999999999


Q ss_pred             EchhHHHHHHHc
Q 019238           80 ICVFLAVALGSW   91 (344)
Q Consensus        80 iC~g~~~~La~a   91 (344)
                      ||.|.. +|+++
T Consensus        77 iC~G~q-~l~~~   87 (198)
T cd01748          77 ICLGMQ-LLFES   87 (198)
T ss_pred             ECHHHH-Hhccc
Confidence            999995 99988

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=92.05  E-value=0.52  Score=50.95  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=57.1

Q ss_pred             HHHHHhCCCeEEEEEecCC---c----------ceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhC
Q 019238            7 IDVLRRSGADVVVASVEKQ---L----------RVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~---~----------~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      +..|+++||++.++....-   .          ......++.+.--.+..|... ||......+..++.+.+-+++|.++
T Consensus       995 a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~-~~~~~~aa~~~n~~~~~~~~~f~~~ 1073 (1239)
T TIGR01857       995 AKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPD-GSAKFIAAILRNPKVRVAIDSFLAR 1073 (1239)
T ss_pred             HHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccc-hhHHHHHHHhhChHHHHHHHHHHhC
Confidence            4557789999888886631   0          112222333333333333322 2111223455688999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCC
Q 019238           74 GRLYAAICVFLAVALGSWGLLKG   96 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g   96 (344)
                      ++++.+||.|- -+|.+.|||-+
T Consensus      1074 d~~~LGICNGf-Q~L~~lGLlP~ 1095 (1239)
T TIGR01857      1074 DGLILGICNGF-QALVKSGLLPY 1095 (1239)
T ss_pred             CCcEEEechHH-HHHHHcCCCcC
Confidence            99999999999 49999999964

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR02069 cyanophycinase cyanophycinase

Probab=92.04  E-value=0.87  Score=40.51  Aligned_cols=98  Identities=19%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             CCeEEEEeCCCcchhH-HHHHHHHHHhcCC-eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hH
Q 019238          160 SPQILVPIANGSEEME-AVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQ  236 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~  236 (344)
                      ..||+|+..-.-+..+ .....+.|++.|+ ++.++..... .-.       ..+...+.+  .+.|+|++.||... ..
T Consensus        28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~~a-------~~~~~~~~l--~~ad~I~~~GGnq~~l~   97 (250)
T TIGR02069        28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-EDA-------SDENAIALL--SNATGIFFTGGDQLRIT   97 (250)
T ss_pred             CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-HHc-------cCHHHHHHH--hhCCEEEEeCCCHHHHH
Confidence            3688888765444434 3356678888897 4665555321 000       000112223  56899999999421 12


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPAL  267 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~  267 (344)
                      .......+.+.|++.+++|.++++..+|+++
T Consensus        98 ~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i  128 (250)
T TIGR02069        98 SLLGDTPLLDRLRKRVHEGIILGGTSAGAAV  128 (250)
T ss_pred             HHHcCCcHHHHHHHHHHcCCeEEEccHHHHh
Confidence            2346667888999999999999999999753

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=92.00  E-value=2.3  Score=40.98  Aligned_cols=184  Identities=16%  Similarity=0.176  Sum_probs=100.0

Q ss_pred             ChHHHHHHHHHh-hC--CCEEEEEchhHHHHHHHcCCCCCCC--------------------------------------
Q 019238           60 SEVLESIVKKQA-SD--GRLYAAICVFLAVALGSWGLLKGLK--------------------------------------   98 (344)
Q Consensus        60 ~~~~~~~l~~~~-~~--g~~i~aiC~g~~~~La~aGll~g~~--------------------------------------   98 (344)
                      +-.+++-+|++. +.  ...+..-|+-. -.++.+|=++.|.                                      
T Consensus       149 slpFlEAiRQ~~~e~g~~n~~fiH~tlv-pyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc  227 (533)
T COG0504         149 SLPFLEAIRQLRLELGRENVLFIHVTLV-PYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFC  227 (533)
T ss_pred             ccHHHHHHHHHHhhhCcccEEEEEEecc-eeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhc
Confidence            445566666655 22  33555556766 3688888888887                                      


Q ss_pred             ---CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeeecC---CCCeEEEEe-CCCc
Q 019238           99 ---DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFD---NSPQILVPI-ANGS  171 (344)
Q Consensus        99 ---dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~v~ill-~~g~  171 (344)
                         ...+|++-...+..+.-+.+-++-.    .+.+.+.+.++.   .+..+.+...+.....   ...+|+++- |-..
T Consensus       228 ~V~~~~Vi~~~Dv~siY~vPl~l~~qgl----~~~i~~~l~l~~---~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l  300 (533)
T COG0504         228 NVPEEAVISAPDVESIYEVPLLLEKQGL----DDYILERLNLNA---PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVEL  300 (533)
T ss_pred             CCCHHHeEecccHHHHHHhHHHHHHcch----HHHHHHHhCCCC---CCcchHHHHHHHHHhcCCCCceEEEEEECCcCc
Confidence               3457777777666666555555433    445555555531   1111111111110011   124466543 2222


Q ss_pred             chhHHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHH
Q 019238          172 EEMEAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM  247 (344)
Q Consensus       172 ~~~e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~  247 (344)
                      .+ .+..+.+.|.-+|    .++.+.-.+.. .+.        .+ ..+... ..+|.++||||++.    +.-+--+.-
T Consensus       301 ~D-aY~Sv~EAL~hag~~~~~~v~i~wIdse-~le--------~~-~~~~~~-~~~dgIlVPGGFG~----RG~eGkI~A  364 (533)
T COG0504         301 PD-AYKSVIEALKHAGIALGVKVNIKWIDSE-DLE--------EE-NAAELE-KLVDGILVPGGFGY----RGVEGKIAA  364 (533)
T ss_pred             hh-HHHHHHHHHHhhhhhcCCceeeEEEccc-ccc--------cc-chhhhh-hcCCEEEeCCCCCc----CchHHHHHH
Confidence            22 4556788888876    33333333321 111        10 011111 12899999999762    234455778


Q ss_pred             HHHHHhcCCcEEEEcchhhh
Q 019238          248 LKKQKESNRPYGAICASPAL  267 (344)
Q Consensus       248 l~~~~~~~k~I~aic~G~~~  267 (344)
                      ++.+.+++.|..+||-|..+
T Consensus       365 i~yAREn~iP~lGIClGmQ~  384 (533)
T COG0504         365 IRYARENNIPFLGICLGMQL  384 (533)
T ss_pred             HHHHHhcCCCEEEEchhHHH
Confidence            88888999999999999654

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=91.76  E-value=0.54  Score=51.20  Aligned_cols=90  Identities=12%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             HHHHHhCCCeEEEEEecC----CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238            7 IDVLRRSGADVVVASVEK----QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC   81 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~----~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC   81 (344)
                      +..|.++||++..|....    ........|+.+.--.+..|... .|-.....+..++.+++.+++|. ++++++.+||
T Consensus      1055 ~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~-sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGIC 1133 (1307)
T PLN03206       1055 AAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLD-SAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVC 1133 (1307)
T ss_pred             HHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccc-hHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEc
Confidence            455788999988887652    11122334444443333333332 22111334567899999999999 5599999999


Q ss_pred             hhHHHHHHHcCCCCCCC
Q 019238           82 VFLAVALGSWGLLKGLK   98 (344)
Q Consensus        82 ~g~~~~La~aGll~g~~   98 (344)
                      .|- -+|.+.|||-|-.
T Consensus      1134 NGf-QiL~~lgllPg~~ 1149 (1307)
T PLN03206       1134 NGC-QLMALLGWVPGPQ 1149 (1307)
T ss_pred             HHH-HHHHHcCCCCCCc
Confidence            999 5999999997543

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=91.72  E-value=0.54  Score=39.68  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      +.+.++|++..++++++.+||.|.. +|+.+
T Consensus        68 ~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~   97 (188)
T cd01741          68 KKLKELIRQALAAGKPVLGICLGHQ-LLARA   97 (188)
T ss_pred             HHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            6789999999999999999999995 88875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK07053 glutamine amidotransferase; Provisional

Probab=91.71  E-value=0.83  Score=40.22  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=46.8

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhc---ccCChHHHHHHHHHhhCCCEEEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYAA   79 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~a   79 (344)
                      ..+.|++.|++++++-+..++ ..       .++  +.+.+..   ||..+..+   ..--..+.++|+++.+.++++.+
T Consensus        19 i~~~L~~~g~~~~v~~~~~~~-~~-------~~~--~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlG   88 (234)
T PRK07053         19 FEQVLGARGYRVRYVDVGVDD-LE-------TLD--ALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLG   88 (234)
T ss_pred             HHHHHHHCCCeEEEEecCCCc-cC-------CCC--ccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEE
Confidence            356678888888888765321 10       001  1111111   55222221   11224778999999999999999


Q ss_pred             EchhHHHHHHHcC
Q 019238           80 ICVFLAVALGSWG   92 (344)
Q Consensus        80 iC~g~~~~La~aG   92 (344)
                      ||.|.- +|+++-
T Consensus        89 IC~G~Q-lla~al  100 (234)
T PRK07053         89 ICLGAQ-LIARAL  100 (234)
T ss_pred             ECccHH-HHHHHc
Confidence            999995 898774

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=91.64  E-value=0.32  Score=46.13  Aligned_cols=71  Identities=27%  Similarity=0.353  Sum_probs=51.8

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc-C--CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD-A--CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC   81 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~-~--gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (344)
                      .+.|++.|.++..+||=.++.+-             ++++. |  ||+|-  ...|.+|+..++.|+++++.|++|-+=|
T Consensus       264 l~~Lr~~GAelv~FSPL~D~~lP-------------~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaEC  330 (451)
T COG1797         264 LELLREAGAELVFFSPLADEELP-------------PDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAEC  330 (451)
T ss_pred             HHHHHHCCCEEEEeCCcCCCCCC-------------CCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEec
Confidence            35678888899988876432211             12222 2  67653  5567889999999999999999999999


Q ss_pred             hhHHHHHHHc
Q 019238           82 VFLAVALGSW   91 (344)
Q Consensus        82 ~g~~~~La~a   91 (344)
                      .|-+ .|.+.
T Consensus       331 GGlM-YL~~~  339 (451)
T COG1797         331 GGLM-YLGES  339 (451)
T ss_pred             ccce-eehhh
Confidence            9996 66643

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=91.58  E-value=0.35  Score=42.82  Aligned_cols=73  Identities=22%  Similarity=0.303  Sum_probs=46.6

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchh-hhcccCChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPG-ATNLKESEVLESIVKKQASDGRLYAAICVFLA   85 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~   85 (344)
                      .+.|++.|.++.+++...  .+....|+-+.           ||+.. +..+.++..+.+.|+++.++|+++.+||.|-.
T Consensus        17 ~~aL~~lG~ev~~v~~~~--~L~~~DgLILP-----------GGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gmq   83 (248)
T PLN02832         17 IAALRRLGVEAVEVRKPE--QLEGVSGLIIP-----------GGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLI   83 (248)
T ss_pred             HHHHHHCCCcEEEeCCHH--HhccCCEEEeC-----------CCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHH
Confidence            355666777666666531  22222333222           55432 33344445688899999999999999999994


Q ss_pred             HHHHHcCC
Q 019238           86 VALGSWGL   93 (344)
Q Consensus        86 ~~La~aGl   93 (344)
                       +|++...
T Consensus        84 -lLa~~~~   90 (248)
T PLN02832         84 -FLAERAV   90 (248)
T ss_pred             -HHHHHhc
Confidence             9988753

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=91.43  E-value=0.48  Score=46.04  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=33.6

Q ss_pred             CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           49 CGMPG--ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        49 gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      ||.+.  ...+..+..+.+.|+++.++|.++.++|.|-. +|++.
T Consensus       294 GG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~~  337 (449)
T TIGR00379       294 GGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQS  337 (449)
T ss_pred             CcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence            66542  23455678889999999999999999999995 88765

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=91.27  E-value=1.3  Score=38.45  Aligned_cols=99  Identities=22%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             CCeEEEEeCCCcchhHHH-HHHHHHHhcCCe-EEEEEeCCCceeeeccceeeeecc-ccccccCCCccEEEEcCCccc-h
Q 019238          160 SPQILVPIANGSEEMEAV-IIIDILRRAKAN-VVVASVADKLEILASCQVKLVADM-LIDEAAKLSYDLIVLPGGLGG-A  235 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~-~~~~~l~~~~~~-v~~~s~~~~~~v~~~~g~~v~~~~-~~~~~~~~~~D~liipGG~~~-~  235 (344)
                      ..||+++-.......+.. ...+.|++.|++ ++++..... .        -..+. ..+.+  .+.|+|++.||... .
T Consensus        29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~l--~~ad~I~~~GG~~~~~   97 (217)
T cd03145          29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVARL--RDADGIFFTGGDQLRI   97 (217)
T ss_pred             CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHHH--HhCCEEEEeCCcHHHH
Confidence            468888877655444433 456677888864 555444321 1        00011 12223  67899999999421 1


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      ........+.+.|++.+++|.++++..+|+.+ +.
T Consensus        98 ~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i-~~  131 (217)
T cd03145          98 TSALGGTPLLDALRKVYRGGVVIGGTSAGAAV-MS  131 (217)
T ss_pred             HHHHcCChHHHHHHHHHHcCCEEEEccHHHHh-hh
Confidence            12345567888999999999999999999654 44

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=91.14  E-value=0.69  Score=39.62  Aligned_cols=50  Identities=34%  Similarity=0.407  Sum_probs=36.0

Q ss_pred             CCccEEEEcCCccchHhh-hcC-HHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAF-AKS-KKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l-~~~-~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..||++++-||..-.+.+ .++ ..-.+-|++..+.++|+.+||.|..+ |.+
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql-LG~  102 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL-LGQ  102 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh-ccc
Confidence            479999998874222222 233 34457788999999999999999876 763

>PRK06186 hypothetical protein; Validated

Probab=91.11  E-value=0.31  Score=42.57  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL  267 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~  267 (344)
                      .++|.|+||||++.    +.-+--+..++.+.++++|+.+||-|..+
T Consensus        52 ~~~dgilvpgGfg~----rg~~Gki~ai~~Are~~iP~LGIClGmQ~   94 (229)
T PRK06186         52 AGFDGIWCVPGSPY----RNDDGALTAIRFARENGIPFLGTCGGFQH   94 (229)
T ss_pred             hhCCeeEeCCCCCc----ccHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence            67899999999752    23445677899999999999999999763

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=90.69  E-value=0.99  Score=37.82  Aligned_cols=70  Identities=17%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF   83 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g   83 (344)
                      ++.|++.|+++.++..+.. . ..     +    ...+.+.-   ||.....   +.+...++++++.++++++.+||.|
T Consensus        13 ~~~l~~~G~~~~~~~~~~~-~-~~-----~----~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~PvlGIC~G   78 (178)
T cd01744          13 LRELLKRGCEVTVVPYNTD-A-EE-----I----LKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPIFGICLG   78 (178)
T ss_pred             HHHHHHCCCeEEEEECCCC-H-HH-----H----hhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCEEEECHH
Confidence            4566778888888876531 1 00     0    00111111   5532222   2467888999999999999999999


Q ss_pred             HHHHHHHc
Q 019238           84 LAVALGSW   91 (344)
Q Consensus        84 ~~~~La~a   91 (344)
                      .. +|+.+
T Consensus        79 ~Q-~l~~~   85 (178)
T cd01744          79 HQ-LLALA   85 (178)
T ss_pred             HH-HHHHH
Confidence            96 77753

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=90.53  E-value=1.4  Score=45.51  Aligned_cols=47  Identities=21%  Similarity=0.239  Sum_probs=31.3

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhc----CCcEEEEcchhhhhhhhc
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKES----NRPYGAICASPALVLEPH  272 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~----~k~I~aic~G~~~lLa~a  272 (344)
                      .+||.|||.||.+.+.    ++.-..++++..+.    .+||.+||-|..+ |+.+
T Consensus        52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~Ql-La~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQS-LCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhHH-HHhh
Confidence            5799999988865432    22223445555543    4999999999776 6543

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PHA03366 FGAM-synthase; Provisional

Probab=90.44  E-value=0.8  Score=50.15  Aligned_cols=88  Identities=10%  Similarity=0.033  Sum_probs=59.2

Q ss_pred             hHHHHHhCCCeEEEEEecC---CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238            6 TIDVLRRSGADVVVASVEK---QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC   81 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~---~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC   81 (344)
                      .+..|.++||++..|....   +.......|+.+.--.+..|... +|......+..|+.+++.+++|+ ++++.+.+||
T Consensus      1045 ~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~-~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiC 1123 (1304)
T PHA03366       1045 LLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYT-GARAAVAALLSNPAVRDALLRFLNRPDTFSLGCG 1123 (1304)
T ss_pred             HHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCccccc-HHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeC
Confidence            3456788999999888663   11122233444433333333322 22223455667899999999999 5699999999


Q ss_pred             h-hHHHHHHHcCCCC
Q 019238           82 V-FLAVALGSWGLLK   95 (344)
Q Consensus        82 ~-g~~~~La~aGll~   95 (344)
                      . |- -+|.+.|+|.
T Consensus      1124 N~G~-Q~L~~lgll~ 1137 (1304)
T PHA03366       1124 ELGC-QILFALKAVG 1137 (1304)
T ss_pred             cHHH-HHHHHcCCcc
Confidence            9 99 5999999993

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=90.28  E-value=2  Score=36.44  Aligned_cols=96  Identities=20%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             CCeEEEEeCCCcch---hHHHH----HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238          160 SPQILVPIANGSEE---MEAVI----IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL  232 (344)
Q Consensus       160 ~~~v~ill~~g~~~---~e~~~----~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~  232 (344)
                      .+|+++++.+--+.   .-+..    +...|...|-++++.-+-.|          .-|+  .++.  +.||.++|.|..
T Consensus         4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g----------efP~--~~Dl--~ky~gfvIsGS~   69 (245)
T KOG3179|consen    4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG----------EFPQ--EEDL--EKYDGFVISGSK   69 (245)
T ss_pred             ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC----------CCCC--hhhh--hhhceEEEeCCc
Confidence            47888888762211   11222    33445555677776665543          1122  2344  789999999874


Q ss_pred             cchHhhhcC---HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          233 GGAQAFAKS---KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       233 ~~~~~l~~~---~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...  ..+.   .+|.+++++.....+.|.+||-|-.+ +|++
T Consensus        70 ~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQi-iara  109 (245)
T KOG3179|consen   70 HDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQI-IARA  109 (245)
T ss_pred             ccc--cccchHHHHHHHHHHHHHhhccceEEEeccHHH-HHHh
Confidence            322  1122   25778888888888999999999887 6543

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.52  E-value=0.46  Score=38.53  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             CCchhhhccc----------CChHHHHHHHHHhhCCCEEEEEchhHHHHHHH
Q 019238           49 CGMPGATNLK----------ESEVLESIVKKQASDGRLYAAICVFLAVALGS   90 (344)
Q Consensus        49 gG~~~~~~~~----------~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~   90 (344)
                      ||++...++.          -+|++....+.|++.||+++-||-+|. .|.+
T Consensus        93 GGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pk  143 (217)
T COG3155          93 GGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPK  143 (217)
T ss_pred             CccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHH
Confidence            8888777663          379999999999999999999999995 7764

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=89.44  E-value=0.77  Score=27.87  Aligned_cols=19  Identities=16%  Similarity=-0.069  Sum_probs=15.1

Q ss_pred             CCcchhHHHHHHHHHHhcC
Q 019238          169 NGSEEMEAVIIIDILRRAK  187 (344)
Q Consensus       169 ~g~~~~e~~~~~~~l~~~~  187 (344)
                      -|++..|+..|+++|..+|
T Consensus        20 TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen   20 TGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             --B-HHHHHHHHHHHHHTT
T ss_pred             ceeccHHHhhHHHHHHHCc
Confidence            4899999999999999876

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=89.10  E-value=0.63  Score=40.59  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=35.5

Q ss_pred             CCccEEEEcCCccchH---------------hhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238          221 LSYDLIVLPGGLGGAQ---------------AFAKSKKLVNMLKKQKESNRPYGAICASPAL  267 (344)
Q Consensus       221 ~~~D~liipGG~~~~~---------------~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~  267 (344)
                      +..|.|+++||. +.+               +..+|.--+.+|+++.++++||.+||-|..+
T Consensus        59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Ql  119 (243)
T COG2071          59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQL  119 (243)
T ss_pred             hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHH
Confidence            567999999993 111               1124455688999999999999999999876

>PRK00784 cobyric acid synthase; Provisional

Probab=88.19  E-value=0.82  Score=44.93  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=29.0

Q ss_pred             CChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC
Q 019238           59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL   93 (344)
Q Consensus        59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl   93 (344)
                      ++..+.+.|+++.++|+++.++|.|-. +|++.-.
T Consensus       310 ~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~~~~  343 (488)
T PRK00784        310 RESGWDEAIRAHARRGGPVLGICGGYQ-MLGRRIA  343 (488)
T ss_pred             HHcCHHHHHHHHHHcCCeEEEECHHHH-HHhhhcc
Confidence            456688999999999999999999995 8887653

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=88.08  E-value=1.1  Score=40.83  Aligned_cols=74  Identities=23%  Similarity=0.401  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC-C-ccchHhhhcCHHHHHHHHHHH
Q 019238          175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-G-LGGAQAFAKSKKLVNMLKKQK  252 (344)
Q Consensus       175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG-G-~~~~~~l~~~~~l~~~l~~~~  252 (344)
                      .+-.+...++..||++..+-..                   .++  ...|-||.|| | ++...+......+.+-|++..
T Consensus        13 n~~si~nal~hlg~~i~~v~~P-------------------~DI--~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yi   71 (541)
T KOG0623|consen   13 NVRSIRNALRHLGFSIKDVQTP-------------------GDI--LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYI   71 (541)
T ss_pred             cHHHHHHHHHhcCceeeeccCc-------------------hhh--ccCceEeecCcccchHHHHHHhhhhhHHHHHHHH
Confidence            3445556666667766544332                   223  4568999998 3 333334456777889999999


Q ss_pred             hcCCcEEEEcchhhhhh
Q 019238          253 ESNRPYGAICASPALVL  269 (344)
Q Consensus       253 ~~~k~I~aic~G~~~lL  269 (344)
                      ..+|++.+||-|...++
T Consensus        72 esgkPfmgicvGlQaLF   88 (541)
T KOG0623|consen   72 ESGKPFMGICVGLQALF   88 (541)
T ss_pred             hcCCCeEeehhhHHHHh
Confidence            99999999999976533

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=87.83  E-value=0.6  Score=38.37  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             CCchhh--hcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC
Q 019238           49 CGMPGA--TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL   93 (344)
Q Consensus        49 gG~~~~--~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl   93 (344)
                      ||.+-.  ..+.++..+.+.|+++.++|.+|.++|.|-. +|.+.=.
T Consensus        15 Gg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~-~Lg~~i~   60 (158)
T PF07685_consen   15 GGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQ-YLGESII   60 (158)
T ss_pred             CCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHH-HHHHHHh
Confidence            565433  2345678899999999999999999999995 8886643

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=86.84  E-value=1.6  Score=47.61  Aligned_cols=88  Identities=11%  Similarity=0.009  Sum_probs=56.0

Q ss_pred             hHHHHHhCCCeEEEEEecCC---cceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238            6 TIDVLRRSGADVVVASVEKQ---LRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC   81 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~---~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC   81 (344)
                      .+..|.++||++..|....-   .......|+.+.--....|..- +|-.....+..|+.+.+.+++|+ ++++.+.+||
T Consensus       946 ~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lg-sg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiC 1024 (1202)
T TIGR01739       946 LLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEV-GARALAAALLRNQAFLRDLLTFLNRPDTFSLGFG 1024 (1202)
T ss_pred             HHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccch-HHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeC
Confidence            34567889999998887641   1111222332211111111111 22222455667899999999999 5699999999


Q ss_pred             h-hHHHHHHHcCCCC
Q 019238           82 V-FLAVALGSWGLLK   95 (344)
Q Consensus        82 ~-g~~~~La~aGll~   95 (344)
                      . |- -+|.+.|++.
T Consensus      1025 N~G~-Q~L~~lg~l~ 1038 (1202)
T TIGR01739      1025 ELGC-QLLLALNIVG 1038 (1202)
T ss_pred             cHHH-HHHHHcCCCc
Confidence            9 99 5999999994

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=86.29  E-value=2.8  Score=44.05  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=55.4

Q ss_pred             EEEeCCCcchhHHHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeecccccccc-----CCCccEEEEcCCccchHh
Q 019238          164 LVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAA-----KLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       164 ~ill~~g~~~~e~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~-----~~~~D~liipGG~~~~~~  237 (344)
                      -||+-|+++...+. ++..|+.. |.++.++-.+.  .             +++++.     ...||.|||-+|.+.+..
T Consensus        83 ~iLlIDnyDSfTyN-L~~~L~~~~g~~~~Vv~nd~--~-------------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~  146 (918)
T PLN02889         83 RTLLIDNYDSYTYN-IYQELSIVNGVPPVVVRNDE--W-------------TWEEVYHYLYEEKAFDNIVISPGPGSPTC  146 (918)
T ss_pred             eEEEEeCCCchHHH-HHHHHHHhcCCCEEEEeCCC--C-------------CHHHHHhhhhcccCCCEEEECCCCCCccc
Confidence            36777888777655 56777776 77766655542  1             233321     146899999988665433


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+-....++|.+.  .+.||.+||-|... |+.
T Consensus       147 ~~d~Gi~~~~i~~~--~~iPILGICLGhQ~-i~~  177 (918)
T PLN02889        147 PADIGICLRLLLEC--RDIPILGVCLGHQA-LGY  177 (918)
T ss_pred             hHHHHHHHHHHHHh--CCCcEEEEcHHHHH-HHH
Confidence            22222335566543  46999999999776 553

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=86.23  E-value=1.9  Score=47.42  Aligned_cols=86  Identities=9%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHHHHhCCCeEEEEEecCC----cceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238            7 IDVLRRSGADVVVASVEKQ----LRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC   81 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~----~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC   81 (344)
                      +..|+++||++..+....-    .......|+.+.--.+..|... .|-.....+..|+.+++.+++|. ++++++.+||
T Consensus      1053 ~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lg-sg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiC 1131 (1290)
T PRK05297       1053 AAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLG-AGEGWAKSILFNPRLRDQFEAFFARPDTFALGVC 1131 (1290)
T ss_pred             HHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccch-HHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEc
Confidence            4557889999888886531    0122223333332222222211 11112344567899999999977 8899999999


Q ss_pred             hhHHHHHHHcC-CC
Q 019238           82 VFLAVALGSWG-LL   94 (344)
Q Consensus        82 ~g~~~~La~aG-ll   94 (344)
                      .|- -+|.+.| ++
T Consensus      1132 NGf-Q~L~~lg~l~ 1144 (1290)
T PRK05297       1132 NGC-QMMSNLKEII 1144 (1290)
T ss_pred             HHH-HHHHHhCCcc
Confidence            999 5999998 54

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=85.61  E-value=1.8  Score=47.45  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             HHHHHhCCCeEEEEEecC---Cc-ceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238            7 IDVLRRSGADVVVASVEK---QL-RVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC   81 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~---~~-~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC   81 (344)
                      +..|.++||++..|....   +. ......|+.+.--.+..|... .|-.....+..++.+++.+++|+ ++++++.+||
T Consensus      1073 ~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lg-sg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiC 1151 (1310)
T TIGR01735      1073 AAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLG-AGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVC 1151 (1310)
T ss_pred             HHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchh-HHHHHHHHHHhChHHHHHHHHHHhCCCceEEEec
Confidence            445778899888888653   10 011122333322222222211 11112334567899999999999 8999999999


Q ss_pred             hhHHHHHH-HcCCCCC
Q 019238           82 VFLAVALG-SWGLLKG   96 (344)
Q Consensus        82 ~g~~~~La-~aGll~g   96 (344)
                      .|-- +|. ..|||-|
T Consensus      1152 NGfQ-~L~~~~gllp~ 1166 (1310)
T TIGR01735      1152 NGCQ-MLSNLLEWIPG 1166 (1310)
T ss_pred             HHHH-HHHHHhCcCCC
Confidence            9994 999 9999964

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=85.42  E-value=4.4  Score=39.26  Aligned_cols=131  Identities=17%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             CCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeec--cceeee--c-CCCCeEEEEeCC---CcchhHHH
Q 019238          106 RGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEF--NPVQWT--F-DNSPQILVPIAN---GSEEMEAV  177 (344)
Q Consensus       106 ~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~--~~~~~~--~-~~~~~v~ill~~---g~~~~e~~  177 (344)
                      +|=.+-++=++..+|++.|...       +..-|.........+.  +.....  . .+..+|+|+-+|   +|.+.+  
T Consensus       199 RGd~~ll~~gik~Le~~tg~~v-------lGv~P~~~~~~~p~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~d--  269 (486)
T COG1492         199 RGDESLLDPGLKWLEELTGVPV-------LGVLPYLKDALRPAEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFD--  269 (486)
T ss_pred             CCCHHHHhhHHHHHHHhhCCee-------EeeccccccccCccccccCchhhcccCCCCceEEEEecCCCccccccch--
Confidence            4555667778888888866532       2221211111110111  111101  1 234688888888   333333  


Q ss_pred             HHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh--cCHHHHHHHHHHHhc
Q 019238          178 IIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--KSKKLVNMLKKQKES  254 (344)
Q Consensus       178 ~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~--~~~~l~~~l~~~~~~  254 (344)
                          .|+.. +.++.++.+..                   ++  .+.|++++||-.....++.  +..-+-.-|.++.++
T Consensus       270 ----pL~~~~~v~v~~v~~~~-------------------~l--~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~  324 (486)
T COG1492         270 ----PLRAEPDVRVRFVKPGS-------------------DL--RDADLVILPGSKNTIADLKILREGGMDEKILEYARK  324 (486)
T ss_pred             ----hhhcCCCeEEEEeccCC-------------------CC--CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhC
Confidence                22322 55666655543                   22  3479999999865444431  222233355556677


Q ss_pred             CCcEEEEcchhhhhhhh
Q 019238          255 NRPYGAICASPALVLEP  271 (344)
Q Consensus       255 ~k~I~aic~G~~~lLa~  271 (344)
                      +.+|.+||.|-.+ |.+
T Consensus       325 ~~~viGICGG~Qm-LG~  340 (486)
T COG1492         325 GGDVIGICGGYQM-LGR  340 (486)
T ss_pred             CCCEEEEcchHHh-hhh
Confidence            8999999999665 653

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=85.17  E-value=1.2  Score=37.97  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=23.9

Q ss_pred             HHHHHHHHhhCCCEEEEEchhHHHHHHHcC
Q 019238           63 LESIVKKQASDGRLYAAICVFLAVALGSWG   92 (344)
Q Consensus        63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aG   92 (344)
                      ...+++++.+.++++.+||.|.. +|+++.
T Consensus        60 ~~~l~~~~~~~~~pvlGiC~G~Q-ll~~~~   88 (196)
T TIGR01855        60 LDLFVELVVRLGKPVLGICLGMQ-LLFERS   88 (196)
T ss_pred             cHHHHHHHHhCCCCEEEECHHHH-Hhhhcc
Confidence            33455778889999999999995 999984

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK06490 glutamine amidotransferase; Provisional

Probab=84.62  E-value=4.3  Score=35.81  Aligned_cols=75  Identities=12%  Similarity=0.087  Sum_probs=45.4

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhc-ccCChHHHHHHHHHhhCCCEEEEEc
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN-LKESEVLESIVKKQASDGRLYAAIC   81 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~-~~~~~~~~~~l~~~~~~g~~i~aiC   81 (344)
                      ..+.|++.|++++++.+..+++.         |+ .+++.+..   ||.....+ ..-...+++||++..+.++++.+||
T Consensus        24 l~~~l~~~g~~~~v~~~~~~~~~---------p~-~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC   93 (239)
T PRK06490         24 VGQLLQERGYPLDIRRPRLGDPL---------PD-TLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGIC   93 (239)
T ss_pred             HHHHHHHCCCceEEEeccCCCCC---------CC-cccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEEC
Confidence            34567778888887765532111         11 12222221   55222211 1112456789999999999999999


Q ss_pred             hhHHHHHHHc
Q 019238           82 VFLAVALGSW   91 (344)
Q Consensus        82 ~g~~~~La~a   91 (344)
                      -|.- +|+.+
T Consensus        94 ~G~Q-lla~a  102 (239)
T PRK06490         94 LGAQ-MLARH  102 (239)
T ss_pred             HhHH-HHHHH
Confidence            9995 99987

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=84.51  E-value=1.5  Score=37.98  Aligned_cols=73  Identities=21%  Similarity=0.255  Sum_probs=43.6

Q ss_pred             hhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCC-Cch--hhhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC-GMP--GATNLKESEVLESIVKKQASDGRLYAAIC   81 (344)
Q Consensus         5 ~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~g-G~~--~~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (344)
                      ...+.|++.|+++.++..+.  .+..       +|..+    ..| |.+  ....+++ ..+.+.|+++.++++++.+||
T Consensus        16 sl~~al~~~g~~v~vv~~~~--~l~~-------~d~iI----lPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGIC   81 (210)
T CHL00188         16 SVSRAIQQAGQQPCIINSES--ELAQ-------VHALV----LPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGIC   81 (210)
T ss_pred             HHHHHHHHcCCcEEEEcCHH--Hhhh-------CCEEE----ECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEEC
Confidence            34667888899888885431  1111       11100    113 321  1222322 345677888888999999999


Q ss_pred             hhHHHHHHHcC
Q 019238           82 VFLAVALGSWG   92 (344)
Q Consensus        82 ~g~~~~La~aG   92 (344)
                      -|- -+|++..
T Consensus        82 lG~-Qll~~~~   91 (210)
T CHL00188         82 LGL-HLLFETS   91 (210)
T ss_pred             HHH-HHHhhcc
Confidence            999 4998763

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=84.18  E-value=7.4  Score=31.82  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHH
Q 019238          170 GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLK  249 (344)
Q Consensus       170 g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~  249 (344)
                      |-.-.=...+..-|+..|+++++...+.                 ..+.+..+||+++|...   .....-++.+.+|++
T Consensus        12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~-----------------~~~~~l~~ydavVIgAs---I~~~h~~~~~~~Fv~   71 (175)
T COG4635          12 GQTRKIAEYIASHLRESGIQVDIQDLHA-----------------VEEPALEDYDAVVIGAS---IRYGHFHEAVQSFVK   71 (175)
T ss_pred             CcHHHHHHHHHHHhhhcCCeeeeeehhh-----------------hhccChhhCceEEEecc---hhhhhhHHHHHHHHH
Confidence            4443334456667788888887766543                 22234478999999654   233345788999999


Q ss_pred             HHHh--cCCcEEEEcchh
Q 019238          250 KQKE--SNRPYGAICASP  265 (344)
Q Consensus       250 ~~~~--~~k~I~aic~G~  265 (344)
                      ++..  +.+|.+.+|.+.
T Consensus        72 k~~e~L~~kP~A~f~vnl   89 (175)
T COG4635          72 KHAEALSTKPSAFFSVNL   89 (175)
T ss_pred             HHHHHHhcCCceEEEeeh
Confidence            9875  789999999873

>PRK06455 riboflavin synthase; Provisional

Probab=84.11  E-value=3.9  Score=33.25  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc--ch
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG--GA  235 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~--~~  235 (344)
                      ++||+|+...-....-.....+.|.+.+  .++.++.+.|-      .-+.+.....+.+   ..||++|..|-.+  ..
T Consensus         1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa------~ELP~aakkL~~~---~~yDaVIaLG~VG~t~h   71 (155)
T PRK06455          1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGI------KDLPVAAKKLIEE---EGCDIVMALGMPGPTEK   71 (155)
T ss_pred             CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCH------HHHHHHHHHHHhc---CCCCEEEEecceeccCc
Confidence            4789988876544444578899999944  67777766552      1112222222222   5799999988532  12


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEE
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGA  260 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~a  260 (344)
                      ..+..+.....+.+-....++||+-
T Consensus        72 ~d~Va~~vS~GL~~lsL~t~~PVi~   96 (155)
T PRK06455         72 DKYCAHEASIGLIMAQLMTNKHIIE   96 (155)
T ss_pred             chhHHHHHHHHHHHHHhhhCCCEEE
Confidence            2233334444455555555666553

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=84.01  E-value=3  Score=35.32  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      ..+.|++.|++++++..+...           ++ .+++.+..   ||.....   ..+.+.++|++ .++++++.+||-
T Consensus        17 i~~~l~~~g~~~~v~~~~~~~-----------~~-~l~~~d~iIi~gGp~~~~---~~~~~~~~i~~-~~~~~PiLGICl   80 (190)
T PRK06895         17 LVDLIRKLGVPMQVVNVEDLD-----------LD-EVENFSHILISPGPDVPR---AYPQLFAMLER-YHQHKSILGVCL   80 (190)
T ss_pred             HHHHHHHcCCcEEEEECCccC-----------hh-HhccCCEEEECCCCCChH---HhhHHHHHHHH-hcCCCCEEEEcH
Confidence            456788889999998865311           00 11122111   5532221   24567889986 678999999999


Q ss_pred             hHHHHHHHc
Q 019238           83 FLAVALGSW   91 (344)
Q Consensus        83 g~~~~La~a   91 (344)
                      |.- +|+.+
T Consensus        81 G~Q-lla~~   88 (190)
T PRK06895         81 GHQ-TLCEF   88 (190)
T ss_pred             HHH-HHHHH
Confidence            995 99987

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=83.68  E-value=0.65  Score=38.83  Aligned_cols=97  Identities=10%  Similarity=0.074  Sum_probs=53.9

Q ss_pred             chhHHHHHHHHHHhcC--CeEEEEEeCCCceeee-ccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH-----H
Q 019238          172 EEMEAVIIIDILRRAK--ANVVVASVADKLEILA-SCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK-----K  243 (344)
Q Consensus       172 ~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~-~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~-----~  243 (344)
                      ...| ..+...|....  .+++++-+..- .... +....-.--.++++.....||.+||-|..  ...+.-.+     +
T Consensus        11 ~~TE-~qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Yw~E   86 (175)
T cd03131          11 IQTE-RQFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAP--VEHLPFEQVDYWEE   86 (175)
T ss_pred             HHHH-HHHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCC--cccCCccccchHHH
Confidence            3455 34566666554  45666665542 2111 10000001135666666899999999974  33332222     4


Q ss_pred             HHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          244 LVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       244 l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +.+.+....++...+..+|-|....|-..
T Consensus        87 l~~i~dwa~~~v~stl~iCWgaqaal~~~  115 (175)
T cd03131          87 LTEILDWAKTHVTSTLFSCWAAMAALYYF  115 (175)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            55555555577899999999976544433

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.28  E-value=1.5  Score=38.17  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---------------hhcCHH
Q 019238          179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---------------FAKSKK  243 (344)
Q Consensus       179 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---------------l~~~~~  243 (344)
                      ..+.+.++|.....+.....             +..++.. ....|.|++|||..+.+.               ..++.-
T Consensus        29 Yv~~i~~aG~~pv~ip~~~~-------------~~~~~~~-l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~   94 (217)
T PF07722_consen   29 YVKAIEAAGGRPVPIPYDAD-------------DEELDEL-LDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIF   94 (217)
T ss_dssp             HHHHHHHTT-EEEEE-SS---------------HHHHHHH-HHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEEccCCC-------------HHHHHHH-HhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHH
Confidence            45566666666655544421             1122222 256899999999522210               112223


Q ss_pred             HHHHHHHHHhcCCcEEEEcchhhhh
Q 019238          244 LVNMLKKQKESNRPYGAICASPALV  268 (344)
Q Consensus       244 l~~~l~~~~~~~k~I~aic~G~~~l  268 (344)
                      =+.+++.+.++++||.+||-|..++
T Consensus        95 e~~l~~~a~~~~~PilGICrG~Q~l  119 (217)
T PF07722_consen   95 ELALIRNALGRGKPILGICRGMQLL  119 (217)
T ss_dssp             HHHHHHHHCCTT--EEEETHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEcHHHHHH
Confidence            3567777788999999999998773

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=82.54  E-value=9.3  Score=35.07  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             CCeEEEEeCCCcch--hHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          160 SPQILVPIANGSEE--MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~--~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ++||+++.-++-..  ..+..+.+.|.+.|+++.+...... ..    +...     +.......+|++++.||.+    
T Consensus         3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~~----~~~~-----~~~~~~~~~d~vi~~GGDG----   68 (305)
T PRK02645          3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-DN----PYPV-----FLASASELIDLAIVLGGDG----   68 (305)
T ss_pred             cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-hc----cccc-----hhhccccCcCEEEEECCcH----
Confidence            47899998886533  2355667778888988766443321 10    1110     1111124689999999954    


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcc-hhhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICA-SPALVLEP  271 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~-G~~~lLa~  271 (344)
                           .++..++.+...+.+|.++-. |..-+|+.
T Consensus        69 -----T~l~~~~~~~~~~~pv~gin~~G~lGFL~~   98 (305)
T PRK02645         69 -----TVLAAARHLAPHDIPILSVNVGGHLGFLTH   98 (305)
T ss_pred             -----HHHHHHHHhccCCCCEEEEecCCcceEecC
Confidence                 345566666677899999987 64322543

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=81.75  E-value=1.7  Score=36.57  Aligned_cols=42  Identities=17%  Similarity=0.095  Sum_probs=30.9

Q ss_pred             CCc-hhhhcccCChHHHHHHHHHhhCC-CEEEEEchhHHHHHHHc
Q 019238           49 CGM-PGATNLKESEVLESIVKKQASDG-RLYAAICVFLAVALGSW   91 (344)
Q Consensus        49 gG~-~~~~~~~~~~~~~~~l~~~~~~g-~~i~aiC~g~~~~La~a   91 (344)
                      ||. .....+.+...+.+-|+++.++| +++-+.|+|. .+||+.
T Consensus        41 GGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl-IlLa~~   84 (188)
T PF01174_consen   41 GGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL-ILLAKE   84 (188)
T ss_dssp             SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH-HHHEEE
T ss_pred             CCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH-HHhhhh
Confidence            663 23344555678899999999998 9999999999 577753

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=81.69  E-value=3.2  Score=43.18  Aligned_cols=71  Identities=30%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcE
Q 019238          179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPY  258 (344)
Q Consensus       179 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I  258 (344)
                      .+..|...|++++++..+-                .+++   .+||.|++..|.+++..   -+.+.+-+++....++||
T Consensus       186 ~IRcL~~RGa~vtVvPw~~----------------~i~~---~~yDGlflSNGPGdPe~---~~~~v~~vr~lL~~~~Pv  243 (1435)
T KOG0370|consen  186 QIRCLVKRGAEVTVVPWDY----------------PIAK---EEYDGLFLSNGPGDPEL---CPLLVQNVRELLESNVPV  243 (1435)
T ss_pred             HHHHHHHhCceEEEecCCc----------------cccc---cccceEEEeCCCCCchh---hHHHHHHHHHHHhCCCCe
Confidence            4556666777777665443                2444   38999999999765543   345677777777778999


Q ss_pred             EEEcchhhhhhhhc
Q 019238          259 GAICASPALVLEPH  272 (344)
Q Consensus       259 ~aic~G~~~lLa~a  272 (344)
                      .+||.|-.+ ||.+
T Consensus       244 fGIClGHQl-lA~A  256 (1435)
T KOG0370|consen  244 FGICLGHQL-LALA  256 (1435)
T ss_pred             EEEehhhHH-HHHh
Confidence            999999755 7754

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=81.09  E-value=3.2  Score=40.06  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=26.6

Q ss_pred             ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      +.++... +.|+++.++|++|.++|.|-. +|++.
T Consensus       292 L~~n~~~-~~i~~~~~~G~pi~aeCGG~q-~L~~~  324 (433)
T PRK13896        292 LADSPAL-DELADRAADGLPVLGECGGLM-ALAES  324 (433)
T ss_pred             HHhCCcH-HHHHHHHHCCCcEEEEehHHH-Hhhcc
Confidence            4445455 889999999999999999995 77763

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=80.28  E-value=3.1  Score=35.39  Aligned_cols=73  Identities=22%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCch-hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHH
Q 019238            8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMP-GATNLKESEVLESIVKKQASDGRLYAAICVFLAV   86 (344)
Q Consensus         8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~-~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~   86 (344)
                      ..|+|.|+++.+..-.  +.+....++-+.--         |-+. .+..+++. .+.+.|++....|+|+.+||-|-- 
T Consensus        19 ~Aler~G~~~~vs~d~--~~i~~AD~liLPGV---------Gaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-   85 (204)
T COG0118          19 KALERLGAEVVVSRDP--EEILKADKLILPGV---------GAFGAAMANLRER-GLIEAIKEAVESGKPFLGICLGMQ-   85 (204)
T ss_pred             HHHHHcCCeeEEecCH--HHHhhCCEEEecCC---------CCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEEeHhHH-
Confidence            4466667666555433  13333333333221         2222 34555544 889999999999999999999995 


Q ss_pred             HHHHcCC
Q 019238           87 ALGSWGL   93 (344)
Q Consensus        87 ~La~aGl   93 (344)
                      +|.+.+.
T Consensus        86 lLfe~Se   92 (204)
T COG0118          86 LLFERSE   92 (204)
T ss_pred             hhhhccc
Confidence            8887665

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=80.25  E-value=3.5  Score=40.97  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      ..+.+.|+++.+.++|+.+||.|.- +|+++
T Consensus        66 ~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         66 RGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             cCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            3577788888899999999999995 99975

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=80.06  E-value=15  Score=31.56  Aligned_cols=91  Identities=19%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcC---CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~---~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      |+|.|.--+|.+...+-..+..|+..-   +.+..+.  +.         .+..+ .|.+    .--+|++|||..-+..
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~--~~---------~Li~E-pW~~----~T~lLV~pGGaDlpY~   64 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVD--AQ---------FLIKE-PWEE----TTLLLVFPGGADLPYV   64 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEee--eh---------eeecC-cchh----ceEEEEecCCCCchHH
Confidence            567777778999999999999888753   2333332  21         12222 2433    2468999999432222


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPAL  267 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~  267 (344)
                      -.-++..-+.|..+.++|..-.+||+|..|
T Consensus        65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            223455567777788899999999999744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-32
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		5e-32
3b36_A	192	Structure Of M26l Dj-1 Length = 192		3e-27
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		3e-27
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		4e-27
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		5e-27
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		5e-27
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		5e-27
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		5e-27
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		6e-27
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		1e-26
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		1e-26
3b38_A	192	Structure Of A104v Dj-1 Length = 192		1e-26
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		1e-26
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		6e-26
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		6e-26
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		6e-26
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		7e-26
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		8e-26
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		1e-25
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		1e-25
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		1e-25
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		1e-25
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		2e-25
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		2e-25
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		4e-25
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		5e-25
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		1e-10
4ge0_A	194	Schizosaccharomyces Pombe Dj-1 T114p Mutant Length		3e-10
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		7e-10
4gdh_A	194	Schizosaccharomyces Pombe Dj-1 Length = 194		2e-09
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		2e-09
4ge3_A	194	Schizosaccharomyces Pombe Dj-1 T114v Mutant Length		3e-09
3mgk_A	211	Crystal Structure Of Probable ProteaseAMIDASE FROM		2e-07
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		2e-07
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		3e-07
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		8e-07
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		2e-06
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		3e-06
3uk7_A	396	Crystal Structure Of Arabidopsis Thaliana Dj-1d Len		1e-05
1oi4_A	193	Crystal Structure Of Yhbo From Escherichia Coli Len		2e-05
2vrn_A	190	The Structure Of The Stress Response Protein Dr1199		5e-05

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 115/183 (62%), Gaps = 3/183 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S   LV +A G+EEME +I  D+LRRA   V VA +     +  S  V+++ D  + + A
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
              +D++VLPGGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  GK 
Sbjct: 65  SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKS 123
Query: 280 ATAFPAMCNKL-SNQSEIENRVVV-DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
            T++P+M  +L +N S ++++ VV DGNL+TSRGPGT+ EFAL I E+  G+ K  E+AK
Sbjct: 124 LTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAK 183
Query: 338 ILL 340
            LL
Sbjct: 184 GLL 186

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 108/186 (58%), Gaps = 4/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    +  +C   VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61
Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +   
Sbjct: 62  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121
Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
              T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+
Sbjct: 122 GNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEV 181
Query: 336 AKILLF 341
           A  L+ 
Sbjct: 182 ASQLVM 187

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D+LRRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
              L+ 
Sbjct: 185 KAPLVL 190

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S +ILVP+A+GSEE E VII+D L RA   V  A+V DKL++  S  V L A+  ++  +
Sbjct: 9   SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
             ++D + LPGG+GGAQAFA S  L+ ++    +  +   AICA+PALV        G +
Sbjct: 69  AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGAR 128
Query: 280 ATAFPAMCNKLSNQSEIENRV--VVDGNLVTSRGPGTSMEF 318
            T  P   + + ++     RV      +L+TS+GPGT++EF
Sbjct: 129 XTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGCGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 2   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 62  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 120
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 121 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Query: 336 AKILLF 341
              L+ 
Sbjct: 181 KAPLVL 186

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+        ICA P  +L  H +  G 
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
              L+ 
Sbjct: 185 KAPLVL 190

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+        ICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S +ILVP+A+GSEE E VII+D L RA   V  A+V DKL++  S  V L A+  ++  +
Sbjct: 9   SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
             ++D + LPGG+GGAQAFA S  L+ ++    +  +   AI A+PALV        G +
Sbjct: 69  AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGAR 128
Query: 280 ATAFPAMCNKLSNQSEIENRV--VVDGNLVTSRGPGTSMEF 318
            T  P   + + ++     RV      +L+TS+GPGT++EF
Sbjct: 129 XTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 2   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 62  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGS 120
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 121 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Query: 336 AKILLF 341
              L+ 
Sbjct: 181 KAPLVL 186

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM  VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 2   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 62  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGS 120
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 121 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Query: 336 AKILLF 341
              L+ 
Sbjct: 181 KAPLVL 186

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       EN V  DG ++TSRGPGTS +FALAIVE   G+  A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
              L+ 
Sbjct: 185 KAPLVL 190

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EE E VI +D+ RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K  N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EE E VI +D+ RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K  N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS +FALAIVE   G+  A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
              L+ 
Sbjct: 185 KAPLVL 190

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM  VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G 
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
              L+ 
Sbjct: 182 KAPLVL 187

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
           ++L   AN  E++E +     L+     V +AS  ++  I       +  D+  D+    
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASF-ERGTITGKHGYSVKVDLTFDKVNPE 60
Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
            +D +VLPGG    +    ++K V++ +K     +P  +IC  P +++   G+L+G+K T
Sbjct: 61  EFDALVLPGGRA-PERVRLNEKAVSIARKXFSEGKPVASICHGPQILISA-GVLRGRKGT 118
Query: 282 AFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGP 312
           ++P + +   N     ++  VVVDGN V+SR P
Sbjct: 119 SYPGIKDDXINAGVEWVDAEVVVDGNWVSSRVP 151

>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 18/186 (9%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
           +A+G++E+E      I +RA+    +V V    D+L       E+ A+   K +     D
Sbjct: 11  VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASPALVLEPHGLL 275
           + AK  YD+ ++PGG  GA+  + +  +  ++K+  K+ N+  G I A P L  +  GL 
Sbjct: 69  DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGP-LTAKTSGL- 125
Query: 276 KGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKAL 333
             K+ T  P++  +L       ++  VV++ NL+TS+GPGT+M F L ++E+   ++K  
Sbjct: 126 PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYN 185
Query: 334 ELAKIL 339
            + K L
Sbjct: 186 AVYKSL 191

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S ++L   A+G E++E +  +  ++     V VAS   + +I       +  D+  +E  
Sbjct: 2   SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQ-RGKITGKHGYSVNVDLTFEEVD 60
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
              +D +VLPGG    +    ++K V + ++  E ++P  +IC  P +++    +LKG++
Sbjct: 61  PDEFDALVLPGG-KAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAK-VLKGRR 118
Query: 280 ATAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPG 313
            T+   + + + N     I+  VVVDGN V+SR PG
Sbjct: 119 GTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPG 154

>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1 Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
           +A+G++E+E      I +RA+    +V V    D+L       E+ A+   K +     D
Sbjct: 11  VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASPALVLEPHGLL 275
           + AK  YD+ ++PGG  GA+  + +  +  ++K+  K+ N+  G I A   L  +  GL 
Sbjct: 69  DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-TLTAKTSGL- 125
Query: 276 KGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKAL 333
             K+ T  P++  +L       ++  VV++ NL+TS+GPGT+M F L ++E+   ++K  
Sbjct: 126 PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYN 185
Query: 334 ELAKIL 339
            + K L
Sbjct: 186 AVYKSL 191

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVV-ASVADKLEILASCQVKLVADMLIDEAAK 220
           ++ + I    E+ E +I  + L++A   VVV  S  ++       ++   AD    EA  
Sbjct: 12  KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRXNEKYKGKRGRLSTQADGTTTEAIA 71
Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
             +D +V+PGG        ++   V  +++  E  +   A+   P +++E   LL+GK+A
Sbjct: 72  SEFDAVVIPGGXA-PDKXRRNPNTVRFVQEAXEQGKLVAAVXHGPQVLIEGD-LLRGKQA 129
Query: 281 TAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPGTSMEFALAIVEK--FFGRNKAL 333
           T F A+     N     ++  +VVDGNL+TSR PG    F  AI+ +  + G++ AL
Sbjct: 130 TGFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAAL 186

>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
           +A+G++E+E      I +RA+    +V V    D+L       E+ A+   K +     D
Sbjct: 11  VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASPALVLEPHGLL 275
           + AK  YD+ ++PGG  GA+  + +  +  ++K+  K+ N+  G I A   L  +  GL 
Sbjct: 69  DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-VLTAKTSGL- 125
Query: 276 KGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKAL 333
             K+ T  P++  +L       ++  VV++ NL+TS+GPGT+M F L ++E+   ++K  
Sbjct: 126 PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYN 185
Query: 334 ELAKIL 339
            + K L
Sbjct: 186 AVYKSL 191

>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM Clostridium Acetobutylicum Atcc 824 Length = 211

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 225 LIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP 284
           ++ +PGG  G +        +N +    + ++   ++C   AL L   G+L GK+AT   
Sbjct: 68  ILFVPGG-SGTREKVNDDNFINFIGNMVKESKYIISVCTGSAL-LSKAGILNGKRATTNK 125
Query: 285 AMCNKLSNQSEI-----ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
                ++ Q+E      E R V DGN+ TS G    ++  L  +E   G+ KALE+++
Sbjct: 126 RSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISR 183

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
           D+I +PGG G   A  +  + +  +++Q    R   ++C S +LVL   GLL+GK+AT  
Sbjct: 67  DVICIPGGTG-VGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
            A    L+    I    RVV DGNL+T  G    ++FAL +  + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
           D+I +PGG G   A  +  + +  +++Q    R   ++C   +LVL   GLL+GK+AT  
Sbjct: 67  DVICIPGGTG-VGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
            A    L+    I    RVV DGNL+T  G    ++FAL +  + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
           D+I +PGG G   A  +  + +  +++Q    R Y    A+ +LVL   GLL+GK+AT  
Sbjct: 67  DVICIPGGTG-VGALMEDPQALAFIRQQAARAR-YVTSVATGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
            A    L+    I    RVV DGNL+T  G    ++FAL +  + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
           D+I +PGG G   A  +  + +  +++Q    R Y    ++ +LVL   GLL+GK+AT  
Sbjct: 67  DVICIPGGTG-VGALMEDPQALAFIRQQAARAR-YVTSVSTGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
            A    L+    I    RVV DGNL+T  G    ++FAL +  + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
           D+I +PGG G   A  +  + +  +++Q    R Y     + +LVL   GLL+GK+AT  
Sbjct: 67  DVICIPGGTG-VGALMEDPQALAFIRQQAARAR-YVTSVXTGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
            A    L+    I    RVV DGNL+T  G    ++FAL +  + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170

>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d Length = 396

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 215 IDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
            D+    SYD +V+PGG    +  A ++ ++N++K+   S +P  +I      +L   G+
Sbjct: 275 FDDLVSSSYDALVIPGGRA-PEYLALNEHVLNIVKEFXNSEKPVASIXHG-QQILAAAGV 332
Query: 275 LKGKKATAFPA--MCNKLSNQSEIE----NRVVVDGNLVTSRGPGTSMEF 318
           LKG+K TA+PA  +   L   + +E    +R   DGNLVT        EF
Sbjct: 333 LKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEF 382

>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli Length = 193

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVV-VASVADKLEILASCQVKLVADMLIDEA 218
           S +I V I +  E+ E     D  R+A   V+ +   A K       +  +  D  IDE 
Sbjct: 23  SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 82
Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
               +D ++LPGG           + V   +    S +P  AIC  P L++    +++G+
Sbjct: 83  TPAEFDALLLPGG-HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISAD-VIRGR 140
Query: 279 KATAFPAMCNKLSNQSE--IENRVVVDGN-LVTSRGP 312
           K TA   +   + N      +  VVVD + LVTSR P
Sbjct: 141 KLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTP 177

>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From Deinococcus Radiodurans: A Member Of The Dj-1 Superfamily Length = 190

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
           Q K   D ++ E     YD ++LPGG          +  +  ++   ++ +P  AI   P
Sbjct: 59  QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGP 118
Query: 266 ALVLEPHGLLKGKKATAFPAMCNKLS--NQSEIENRVVVDGNLVTSRGPGTSMEFALAIV 323
              L   G+ +G K T++ ++  +L+      ++   V D  +VTSR P     F   IV
Sbjct: 119 -WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIV 177
Query: 324 EKF 326
           E+F
Sbjct: 178 EEF 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	3e-79
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	7e-41
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	8e-79
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	6e-42
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	5e-78
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	1e-40
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	6e-78
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	4e-45
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	7e-70
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	2e-33
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	6e-61
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	2e-28
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	3e-60
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	1e-26
2fex_A	188	Conserved hypothetical protein; structural genomic	3e-58
2fex_A	188	Conserved hypothetical protein; structural genomic	2e-24
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	6e-56
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	3e-23
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	1e-55
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	6e-34
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-48
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-18
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	2e-46
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	2e-20
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	1e-42
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	1e-16
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	5e-39
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-14
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	4e-34
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	2e-10
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	4e-20
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	8e-07
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	2e-17
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-17
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	1e-05
1u9c_A	224	APC35852; structural genomics, protein structure i	4e-15
3gra_A	202	Transcriptional regulator, ARAC family; transcript	1e-13
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	1e-13
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	7e-11
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	2e-10
3er6_A	209	Putative transcriptional regulator protein; struct	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	7e-09
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	9e-09
3n7t_A	247	Macrophage binding protein; seattle structural gen	4e-08

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  239 bits (612), Expect = 3e-79
 Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 3/185 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S   LV +A G+EEME +I  D+LRRA   V VA +     +  S  V+++ D  + + A
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64

Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
              +D++VLPGGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  GK 
Sbjct: 65  SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKS 123

Query: 280 ATAFPAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
            T++P+M  +L N      +  VV DGNL+TSRGPGT+ EFAL I E+  G+ K  E+AK
Sbjct: 124 LTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAK 183

Query: 338 ILLFT 342
            LL  
Sbjct: 184 GLLVA 188

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  140 bits (356), Expect = 7e-41
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 38/175 (21%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           ME +I  DVLRR+G  V VA +     V     V+I+ D  ++              G+ 
Sbjct: 19  MEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLA--VALGSWGLLKGLK------------ 98
           G+  + ES ++  +++ Q S G L AAIC   A    L   G+  G              
Sbjct: 79  GSNAMGESSLVGDLLRSQESGGGLIAAIC---AAPTVLAKHGVASGKSLTSYPSMKPQLV 135

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRAN 140
                        DG ++T+RGPGT  EF + + E+L GK K  EV+   ++  N
Sbjct: 136 NNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAYN 190

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  239 bits (611), Expect = 8e-79
 Identities = 82/186 (44%), Positives = 108/186 (58%), Gaps = 4/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK--LEILASCQVKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    L I  S  VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +   
Sbjct: 62  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121

Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
              T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+
Sbjct: 122 GNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEV 181

Query: 336 AKILLF 341
           A  L+ 
Sbjct: 182 ASQLVM 187

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  143 bits (364), Expect = 6e-42
 Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 35/186 (18%)

Query: 1   MEAVITIDVLRRSGADVVVASVE--KQLRVDACHGVKIVADALVSNCRDAC--------G 50
            EAV TID+L R G  V  ASV     L +    GVK++ADA +    D          G
Sbjct: 16  TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 75

Query: 51  MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------ 98
           + GA   ++S +L   VK+    GR+ AAIC   A  L    +                 
Sbjct: 76  IKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP 135

Query: 99  -----------DGKV--VTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEF 145
                      D +V  +T++GPGT ++F + +++ L G+ KA EV+   VM A   + +
Sbjct: 136 AEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYY 195

Query: 146 TIAEFN 151
              E +
Sbjct: 196 EQLEHH 201

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  236 bits (605), Expect = 5e-78
 Identities = 76/187 (40%), Positives = 105/187 (56%), Gaps = 5/187 (2%)

Query: 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA 218
            S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A
Sbjct: 2   ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDA 61

Query: 219 AKLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            K   YD++VLPGG  GAQ  ++S  +  +LK+Q+        ICA P   L  H +  G
Sbjct: 62  KKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGFG 120

Query: 278 KKATAFPAMCNKLSNQSE---IENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALE 334
            K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A +
Sbjct: 121 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ 180

Query: 335 LAKILLF 341
           +   L+ 
Sbjct: 181 VKAPLVL 187

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  140 bits (355), Expect = 1e-40
 Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 40/175 (22%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC---------GM 51
           ME VI +DV+RR+G  V VA +  +  V     V I  DA + + +            G 
Sbjct: 17  METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLA--VALGSWGLLKGLK----------- 98
            GA NL ES  ++ I+K+Q +   L A IC   A   AL +  +  G K           
Sbjct: 77  LGAQNLSESAAVKEILKEQENRKGLIATIC---AGPTALLAHEIGFGSKVTTHPLAKDKM 133

Query: 99  ---------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
                          DG ++T+RGPGT  EF +A+VE L GK  A +V    V++
Sbjct: 134 MNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  236 bits (605), Expect = 6e-78
 Identities = 70/184 (38%), Positives = 107/184 (58%), Gaps = 2/184 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S +ILVP+A+GSEEME VII+D L RA   V +A+V DKL++  S  V L A+  ++  +
Sbjct: 9   SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACS 68

Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
             ++D + LPGG+GGAQAFA S  L+ ++    +  +   AICA+PALV        G +
Sbjct: 69  AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGAR 128

Query: 280 ATAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
            T  P   + + ++  S          +L+TS+GPGT++EFALA++    G   A  +A 
Sbjct: 129 MTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAA 188

Query: 338 ILLF 341
            ++ 
Sbjct: 189 PMVL 192

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  152 bits (386), Expect = 4e-45
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 33/179 (18%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           ME VI +D L R+G  V +A+V  +L+V    GV + A+  +  C            G+ 
Sbjct: 23  METVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVG 82

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA    +S  L +++   +  G+L AAIC   A+         G +              
Sbjct: 83  GAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSE 142

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFT 146
                         ++T++GPGT +EF +A++  L G   A  V+   V+      E +
Sbjct: 143 RLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLHPQQLTELS 201

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  215 bits (550), Expect = 7e-70
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDE- 217
            ++ + +A+G++E+E      I +RA+  +    V +     +  S  V++ A+    E 
Sbjct: 5   VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEI 64

Query: 218 ----AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ-KESNRPYGAICASPALVLEPH 272
                    YD+ ++PGG  GA+  + +  +  ++K+  K+ N+  G ICA    +    
Sbjct: 65  PSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAKT 122

Query: 273 GLLKGKKATAFPAMCNKLSNQSE--IENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRN 330
             L  K+ T  P++  +L       ++  VV++ NL+TS+GPGT+M F L ++E+   ++
Sbjct: 123 SGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKD 182

Query: 331 KALELAKILLF 341
           K   + K L  
Sbjct: 183 KYNAVYKSLSM 193

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  121 bits (306), Expect = 2e-33
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 43/175 (24%)

Query: 1   MEAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDAC--------- 49
           +E      + +R+   +    V   K   V     V++ A+        A          
Sbjct: 18  IEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIA 77

Query: 50  ----GMPGATNLKESEVLESIVKKQ-ASDGRLYAAICVFLAVALGSWGLLKGLK------ 98
               G  GA  L  +  ++ +VK+      +    IC            L   +      
Sbjct: 78  IIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICA--GTLTAKTSGLPNKQITGHPS 135

Query: 99  -------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGA 134
                              +  ++T++GPGT M F + L+EQ+  K K + V  +
Sbjct: 136 VRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKS 190

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  194 bits (494), Expect = 6e-61
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 6/201 (2%)

Query: 142 GDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEI 201
           G +      +     F    ++ + + +   +++  ++ D+L R   +  V  +  K E 
Sbjct: 2   GSDKIHHHHHHENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEH 61

Query: 202 LASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAI 261
            +   + +  D  + E      D++++  G  G  A  + +  ++ LK    S +  G+I
Sbjct: 62  HSQLGMTVKTDGHVSEVK--EQDVVLITSGYRGIPAALQDENFMSALKLD-PSRQLIGSI 118

Query: 262 CASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFA 319
           CA    VL   GLLKGKK T  P     L        +  +V++GN+ T+ G  + +   
Sbjct: 119 CAGS-FVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLV 177

Query: 320 LAIVEKFFGRNKALELAKILL 340
             + E+ F   K  ++   L+
Sbjct: 178 GWLAERLFDSVKRKQIQNQLI 198

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  109 bits (275), Expect = 2e-28
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGA 54
           ++  +  D+L R+     V  +  +    +  G+ +  D  VS  ++        G  G 
Sbjct: 34  VDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGI 93

Query: 55  TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK---------------- 98
               + E   S +K   S  +L  +IC   +  L   GLLKG K                
Sbjct: 94  PAALQDENFMSALKLDPS-RQLIGSICA-GSFVLHELGLLKGKKLTTNPDAKAVLQGMGG 151

Query: 99  ---------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
                    +G + T  G  + +  V  L E+L+   K  ++
Sbjct: 152 DVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQI 193

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  190 bits (484), Expect = 3e-60
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 8/170 (4%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           + V   N          ++       +  V +V+D  EI  +  + L+ D +I       
Sbjct: 5   VAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHE 64

Query: 223 --YDLIVLPGG-----LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275
             +D +V   G              +  L+ ++K   E  +     CA   ++ +  G+ 
Sbjct: 65  DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFDFTGIT 123

Query: 276 KGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEK 325
           KGKK    P     + N    + +  +DGN  T++   T       ++E 
Sbjct: 124 KGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEA 173

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  102 bits (257), Expect = 1e-26
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 43/162 (26%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR------DA------ 48
                 ++    +G    V +V     +    G+ ++ D +++N +      DA      
Sbjct: 16  CGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG 75

Query: 49  ---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLA--VALGSWGLLKGLK----- 98
                     N   +  L  ++K     G++    C   A  +     G+ KG K     
Sbjct: 76  DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHC---AGAMMFDFTGITKGKKVAVHP 132

Query: 99  ------------------DGKVVTTRGPGTPMEFVVALVEQL 122
                             DG   T +   T    +  ++E L
Sbjct: 133 LAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL 174

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  185 bits (472), Expect = 3e-58
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 10/189 (5%)

Query: 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK 220
            +I + +A    + E  ++    R      +V +  D + + +   +K+  D   D    
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDP 61

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
           +  D +V+PGGL   +  A    L  ++K+ ++ +R    ICA+    L   G+L     
Sbjct: 62  VDIDALVIPGGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAH 118

Query: 281 TAFPAMCNKLSNQSEIEN------RVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALE 334
           T      +K       E       R V DG +VT+ G    + FA+ I++         E
Sbjct: 119 TGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAE 177

Query: 335 LAKILLFTR 343
               +    
Sbjct: 178 AELQIFAAE 186

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 36/169 (21%), Positives = 54/169 (31%), Gaps = 43/169 (25%)

Query: 1   MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GM 51
            E  +     R   G ++V A+ +    V +  G+K+  D                  G+
Sbjct: 15  WEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------- 98
                   +  L  +VK+     RL A IC   A ALG  G+L  +              
Sbjct: 74  SWEKGT--AADLGGLVKRFRDRDRLVAGICA-AASALGGTGVLNDVAHTGNALASHKAYP 130

Query: 99  ----------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
                           DG VVT  G   P+ F V +++ L   G   E 
Sbjct: 131 AYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEA 178

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  185 bits (471), Expect = 6e-56
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 5/186 (2%)

Query: 154 QWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-CQVKLVAD 212
                   ++ + I    E+ E +I  + L++A   VVV       +      ++   AD
Sbjct: 4   NHNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQAD 63

Query: 213 MLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272
               EA    +D +V+PGG+       ++   V  +++  E  +   A+C  P  VL   
Sbjct: 64  GTTTEAIASEFDAVVIPGGMA-PDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEG 121

Query: 273 GLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRN 330
            LL+GK+AT F A+   + N     ++  +VVDGNL+TSR PG    F  AI+ +     
Sbjct: 122 DLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGG 181

Query: 331 KALELA 336
           K   L 
Sbjct: 182 KDAALP 187

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score = 97.9 bits (244), Expect = 3e-23
 Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 41/200 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHG-VKIVADALVSNCR----DACGMPG-- 53
            E +I  + L+++G +VVV       +     G +   AD   +       DA  +PG  
Sbjct: 24  TEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM 83

Query: 54  -ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
               ++ +      V++    G+L AA+C      L    LL+G +              
Sbjct: 84  APDKMRRNPNTVRFVQEAMEQGKLVAAVC-HGPQVLIEGDLLRGKQATGFIAISKDMMNA 142

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      DG ++T+R PG    F  A++ +L   GK   +   +   A   + + +
Sbjct: 143 GADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDEKDRNA---EWWKL 199

Query: 148 AEFNPVQWTFDNSPQILVPI 167
           A+     W       I+  +
Sbjct: 200 AD----AWGGSTKGDIVRGL 215

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  185 bits (471), Expect = 1e-55
 Identities = 70/398 (17%), Positives = 121/398 (30%), Gaps = 105/398 (26%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQ---------------LRVDACHGVKIVADALVSNC 45
            E ++    L+  G  V      K+                      G     +A     
Sbjct: 26  YEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEV 85

Query: 46  R----DACGMPG---ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98
                D   +PG      L  +  +  +VK+ +  G+  A+IC    + L +   + G K
Sbjct: 86  DLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASIC-HGQLILAAADTVNGRK 144

Query: 99  -----------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKAD 129
                                        DG ++T        EF+   V+ L GK    
Sbjct: 145 CTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKIT-- 202

Query: 130 EVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKAN 189
                                         + +IL    +  E+ E  +    L+     
Sbjct: 203 ----------------------------GANKRILFLCGDYMEDYEVKVPFQSLQALGCQ 234

Query: 190 VVVASVADKLEILASCQV---------------KLVADMLIDEAAKLSYDLIVLPGGLGG 234
           V       K        +                       D+    SYD +V+PGG   
Sbjct: 235 VDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGG-RA 293

Query: 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN-- 292
            +  A ++ ++N++K+   S +P  +IC     +L   G+LKG+K TA+PA+   +    
Sbjct: 294 PEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLKGRKCTAYPAVKLNVVLGG 352

Query: 293 ----QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326
               + +  +R   DGNLVT        EF   ++   
Sbjct: 353 GTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALL 390

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  127 bits (322), Expect = 6e-34
 Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV----------- 207
           NS  +L+   +  E+ E ++    L+     V       K        V           
Sbjct: 11  NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFE 70

Query: 208 ----KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263
                   +   DE     YD +V+PGG    +  A +  +V ++K+   S +P  +IC 
Sbjct: 71  SRGHNFTLNATFDEVDLSKYDGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICH 129

Query: 264 SPALVLEPHGLLKGKKATAFPAMCNKLSN------QSEIENRVVVDGNLVTSRGPGTSME 317
              L+L     + G+K TA+  +   L        +    +  VVDG+L+T+       E
Sbjct: 130 GQ-LILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPE 188

Query: 318 FALAIVEKFFGRNKALELAKILLFT 342
           F    V+   G+        + L  
Sbjct: 189 FIQLFVKALGGKITGANKRILFLCG 213

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  161 bits (409), Expect = 2e-48
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 17/177 (9%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAK------ANVVVASVA-DKLEILASCQVKLVADMLI 215
             + + N   + E   +I  L   +      A + V +V  +K  I     +++  D+ +
Sbjct: 8   AFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISL 67

Query: 216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275
           DE    S DL++LPGG   ++     + ++  + +  +      AIC +    L   G L
Sbjct: 68  DECTLESKDLLILPGGTTWSEEIH--QPILERIGQALKIGTIVAAICGAT-DALANMGYL 124

Query: 276 KGKKATAFPAMCNKLSNQS------EIENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326
             +K T+      K+   +            V D NLVT+ G    +EFA+ +++K 
Sbjct: 125 DTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI 180

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 51/199 (25%)

Query: 1   MEAVITIDVLRRS--------GADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--- 49
            E    I  L              V+     K++ +    G++I  D  +  C       
Sbjct: 19  WEYGYLIAELNSGRYFKKDLAPLKVITVGANKEM-ITTMGGLRIKPDISLDECTLESKDL 77

Query: 50  -----GMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------ 98
                G   +  + +  +LE  + +    G + AAIC     AL + G L   K      
Sbjct: 78  LILPGGTTWSEEIHQ-PILE-RIGQALKIGTIVAAICG-ATDALANMGYLDTRKHTSNNL 134

Query: 99  -----------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGAR 135
                                  D  +VT  G   P+EF + +++++      D +    
Sbjct: 135 EYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI-DVFTLDALHSWY 192

Query: 136 VMRANHGDEFTIAEFNPVQ 154
            +   H  E+     N + 
Sbjct: 193 NLNKTHKPEYFFQLMNSIN 211

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  156 bits (395), Expect = 2e-46
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 15/189 (7%)

Query: 162 QILVPIANGSEEMEAVIIIDIL-RRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK 220
           + L  I +   + E V +   L +R   +V   S+     + +    K   D +I     
Sbjct: 5   KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP--IVSSIGGFKTSVDYIIGLEPA 62

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
            +++L+V+ GG   +     +KKL++ +K   + N P  AIC +    L  +GLL     
Sbjct: 63  -NFNLLVMIGGDSWSN---DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNNHSH 117

Query: 281 TAFPAMCNKLSNQ-----SEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           T       K   Q     S +E + V D NLVT+ G    +EF   I+E     +    +
Sbjct: 118 TGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEM-IDFDTPENI 175

Query: 336 AKILLFTRT 344
            K++   R 
Sbjct: 176 EKMMYMNRY 184

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 35/186 (18%), Positives = 53/186 (28%), Gaps = 38/186 (20%)

Query: 1   MEAVITIDVL-RRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR---DACGMPGA-T 55
            E V     L +R    V   S++    V +  G K   D ++       +   M G  +
Sbjct: 17  WEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLEPANFNLLVMIGGDS 74

Query: 56  NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------- 98
              +++ L   VK         AAIC      L   GLL                     
Sbjct: 75  WSNDNKKLLHFVKTAFQKNIPIAAICG-AVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKP 133

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      D  +VT  G   P+EF   ++E +      + +     M       F  
Sbjct: 134 ISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMI-DFDTPENIEKMMYMNRYGFYHFCD 191

Query: 148 AEFNPV 153
              NP 
Sbjct: 192 KYGNPF 197

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  145 bits (368), Expect = 1e-42
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 9/180 (5%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----CQVKLVADMLIDE 217
           I +  A+G EE+E       +  A     + S+    EI +       Q K   D ++ E
Sbjct: 12  IAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSE 70

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
                YD ++LPGG          +  +  ++   ++ +P  AIC  P   L   G+ +G
Sbjct: 71  VQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQG 129

Query: 278 KKATAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
            K T++ ++  +L+      ++   V D  +VTSR P     F   IVE+F   + +   
Sbjct: 130 LKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRR 189

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 44/171 (25%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACH----GVKIVADALVSNCR----DAC--- 49
           +E       +  +G    + S+E               K   D +VS  +    D     
Sbjct: 23  IELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLP 82

Query: 50  -GMPGATNLKESEVLESIVKKQASDGRLYAAIC---VFLAVALGSWGLLKGLK------- 98
            G      L+  E     V+     G+  AAIC     L+      G+ +GLK       
Sbjct: 83  GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET----GIAQGLKMTSWSSL 138

Query: 99  ------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
                             D  VVT+R P     F   +VE+      +   
Sbjct: 139 KRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRR 189

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  135 bits (342), Expect = 5e-39
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           +L   A+G E++E +  +  ++     V VAS     +I       +  D+  +E     
Sbjct: 5   VLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDE 63

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282
           +D +VLPGG    +    ++K V + ++  E ++P  +IC  P  +L    +LKG++ T+
Sbjct: 64  FDALVLPGGKA-PEIVRLNEKAVMITRRMFEDDKPVASICHGP-QILISAKVLKGRRGTS 121

Query: 283 FPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326
              + + + N     I+  VVVDGN V+SR PG    +    V+  
Sbjct: 122 TITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 34/155 (21%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPG--- 53
           +E +  +  ++  G +V VAS ++  ++   HG  +  D           DA  +PG   
Sbjct: 16  LELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA 74

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
              ++ +E    I ++   D +  A+IC      L S  +LKG +               
Sbjct: 75  PEIVRLNEKAVMITRRMFEDDKPVASIC-HGPQILISAKVLKGRRGTSTITIRDDVINAG 133

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLY 123
                     DG  V++R PG    ++   V+ L+
Sbjct: 134 AEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLLH 168

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  123 bits (311), Expect = 4e-34
 Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 6/170 (3%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-CQVKLVADMLIDEAAKL 221
           I V I +  E+ E     D  R+A   V+         +     +  +  D  IDE    
Sbjct: 26  IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPA 85

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
            +D ++LPGG           + V   +    S +P  AIC  P  +L    +++G+K T
Sbjct: 86  EFDALLLPGG-HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLT 143

Query: 282 AFPAMCNKLSNQSEI--ENRVVVDGN-LVTSRGPGTSMEFALAIVEKFFG 328
           A   +   + N      +  VVVD + LVTSR P     F    +     
Sbjct: 144 AVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 41/161 (25%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHG-VKIVADALVSNCR----DACGMPG-- 53
            E     D  R++G +V+    +    V    G   +  D  +        DA  +PG  
Sbjct: 37  SEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 96

Query: 54  -ATNLKESEVLESIVKKQASDGRLYAAIC---VFLAVALGSWGLLKGLK----------- 98
               L+      +  +   + G+   AIC     L  A     +++G K           
Sbjct: 97  SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA----DVIRGRKLTAVKPIIIDV 152

Query: 99  ---------------DGKVVTTRGPGTPMEFVVALVEQLYG 124
                            ++VT+R P     F    +  L  
Sbjct: 153 KNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 87.0 bits (216), Expect = 4e-20
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 6/185 (3%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAK 220
           QI + +  G   M+ V    +        + + +      + +   + +V         +
Sbjct: 25  QIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVA-KSLDPVTSDAGLAIVPTATFGTCPR 83

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
               ++  PGG  G  A A   + +  +  +    +   ++C S +L+L   GLLKG KA
Sbjct: 84  -DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVC-SGSLILGAAGLLKGYKA 141

Query: 281 TAFPAMCNKLSNQSEIE--NRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKI 338
           T+  +  + L+    I    RVV D N +T  G    ++F L++V +   +  A     +
Sbjct: 142 TSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLM 201

Query: 339 LLFTR 343
             +  
Sbjct: 202 SEYDP 206

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 41/172 (23%)

Query: 1   MEAVITIDVL-RRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC-------GMP 52
           M+ V    +     GA + + +      V +  G+ IV  A    C           G  
Sbjct: 37  MDLVGPHCMFGSLMGAKIYIVAKSLDP-VTSDAGLAIVPTATFGTCPRDLTVLFAPGGTD 95

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAIC--VFLAVALGSWGLLKGLK------------ 98
           G           + +  + +  +   ++C    +   LG+ GLLKG K            
Sbjct: 96  GTLAAASDAETLAFMADRGARAKYITSVCSGSLI---LGAAGLLKGYKATSHWSCRDALA 152

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVM 137
                        D   +T  G    ++F +++V +L  +  A+      + 
Sbjct: 153 GFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECA--QLMS 202

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE-ILASCQVKLVADMLIDEAAK 220
           +I V + N  E ++    ++I    + +  +  ++     + +S +V++   +   +   
Sbjct: 6   RIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENI 65

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
               ++ +PGG G  +        +N +    + ++   ++C + + +L   G+L GK+A
Sbjct: 66  E--KILFVPGGSG-TREKVNDDNFINFIGNMVKESKYIISVC-TGSALLSKAGILNGKRA 121

Query: 281 TAFPAMCNKLSNQS-----EIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           T        ++ Q+       E R V DGN+ TS G    ++  L  +E   G+ KALE+
Sbjct: 122 TTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEI 181

Query: 336 AKIL 339
           ++ +
Sbjct: 182 SRSI 185

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAK 220
           QI   +    ++++     D+L       V +    +   ++AS  + L A     +   
Sbjct: 7   QIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIW-KEPGPVVASSGLVLQATTSFADCPP 65

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
           L  D+I +PGG G   A  +  + +  +++Q    R   ++  + +LVL   GLL+GK+A
Sbjct: 66  L--DVICIPGGTG-VGALMEDPQALAFIRQQAARARYVTSVS-TGSLVLGAAGLLQGKRA 121

Query: 281 TAFPAMCNKLSNQSEIEN--RVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKI 338
           T   A    L+    I    RVV DGNL+T  G    ++FAL +  + F    A  +   
Sbjct: 122 TTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQ 181

Query: 339 L 339
           L
Sbjct: 182 L 182

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 39/170 (22%)

Query: 1   MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGA 54
           ++     DVL       V +   E    V A  G+ + A    ++C         G  G 
Sbjct: 19  LDLTGPHDVLASLPDVQVHLIWKEPGP-VVASSGLVLQATTSFADCPPLDVICIPGGTGV 77

Query: 55  TNLKESEVLESIVKKQASDGRLYAAIC--VFLAVALGSWGLLKGLK-------------- 98
             L E     + +++QA+  R   ++     +   LG+ GLL+G +              
Sbjct: 78  GALMEDPQALAFIRQQAARARYVTSVSTGSLV---LGAAGLLQGKRATTHWAYHELLAPL 134

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVM 137
                      DG ++T  G    ++F + L  +L+    A  V     +
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV--QLQL 182

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 168 ANGSEEMEAVIIIDILRRAKANVVVAS------------VADKLEILASCQVKLVADMLI 215
             G    E  +   + +    +V VAS            + +K    A  +  L     +
Sbjct: 23  KTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82

Query: 216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL---VLEPH 272
            +     +D I LPGG G    F  ++ L  +L++  E  R   A+C  P+         
Sbjct: 83  SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKD 142

Query: 273 G--LLKGKKATAFPAMCNKLSN---------QSEIENR-------------VVVDGNLVT 308
           G  ++KGK  T+F     +            +S +  R              V DGNL+T
Sbjct: 143 GTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLIT 202

Query: 309 SRGPGTSMEFALAIVE 324
            + P +S   A  +V 
Sbjct: 203 GQNPQSSRSTAEKVVA 218

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 26/166 (15%)

Query: 190 VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLK 249
               S  D   +L+   ++LVA  L   A K   DL+V+ GGL          +L  +L 
Sbjct: 41  FTPLS-LDGDRVLSDLGLELVATELSAAALK-ELDLLVVCGGLRTPLK---YPELDRLLN 95

Query: 250 KQKESNRPYGAICASPALVLEPHGLLKGKKAT-----------AFPAMCNKLSNQSEIEN 298
                    G +  + A  L   G+L     +             P           I  
Sbjct: 96  DCAAHGMALGGLW-NGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQT--------RITP 146

Query: 299 RV-VVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR 343
               +D + +++  P  +ME  L +V + +G   A  + +IL F+ 
Sbjct: 147 ASFTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSG 192

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 28/143 (19%)

Query: 211 ADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL- 269
           AD++    A   Y  I +PGG G      +S+ +   L+   +++R   ++C  PA  L 
Sbjct: 134 ADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLA 193

Query: 270 --EPHGLLKGKKATAFPAMCNKLSN-------------QSEIENR------------VVV 302
                  L G    AFP   +K +                E++              V  
Sbjct: 194 LRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHK 253

Query: 303 DGNLVTSRGPGTSMEFALAIVEK 325
           D  L+T   P  +        ++
Sbjct: 254 DRKLLTGDSPFAANALGKLAAQE 276

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 60.4 bits (146), Expect = 7e-11
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 43/207 (20%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVAS----------------VADKLEILASCQVKLVADM 213
           GSE  EAV+++  L R   N    +                V +   IL          +
Sbjct: 38  GSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSV 97

Query: 214 L-IDEAAKLSYDLIVLPGGLGGAQAFAKS-----------KKLVNMLKKQKESNRPYGAI 261
             I++     +D++V+PGG G A+ F+              +  N +++   + +P GA+
Sbjct: 98  YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAV 157

Query: 262 CASPALVLEPHGLLKGKKATAFPAMCNKLSN-----QSEIENRVVVD--GNLVTSRGP-- 312
           C SPA+V+     +   K T        +             + V D    + +      
Sbjct: 158 CISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC--SAY 215

Query: 313 --GTSMEFALAIVEKFFGRNKALELAK 337
               S+      ++     +  +   K
Sbjct: 216 MRNDSLYNVYLGIQDMI--SSMVNYLK 240

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 33/211 (15%), Positives = 59/211 (27%), Gaps = 54/211 (25%)

Query: 168 ANGSEEMEAVIIIDILRRAKANVVVASV---------------------ADKLEILASCQ 206
             G   +EA+   +  R+    V   S                       D     +   
Sbjct: 23  KTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82

Query: 207 VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266
             L       E     Y +     G G    + K+K L ++  +   +     A+C  PA
Sbjct: 83  KTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA 142

Query: 267 LVL----EPHG--LLKGKKATAFP-------------AMCNKLSNQSEIENR-------- 299
           +      +  G  L++GK  T F                 N  + +   +          
Sbjct: 143 IFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPV 202

Query: 300 ------VVVDGNLVTSRGPGTSMEFALAIVE 324
                  + DG LVT   P ++   A+  ++
Sbjct: 203 GPWDDYSITDGRLVTGVNPASAHSTAVRSID 233

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 33/180 (18%)

Query: 174 MEAVIIIDILRRAKA-------NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLI 226
              +  ++IL  A            V +  +   ++    + +              +++
Sbjct: 22  ASIISSLEILETAAEFAEFQGFMTHVVTP-NNRPLIGRGGISVQPTAQWQSFDFT--NIL 78

Query: 227 VLPGGLGGAQAFAK-SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT---- 281
           ++       ++  K    L + +++         AI  +   V+   GLL+  KA     
Sbjct: 79  IIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAID-TGIFVVAKAGLLQQNKAVMHSY 137

Query: 282 -------AFPAMCNKLSNQSEIENRV--VVDGNLVTSRGPGTSMEFALAIVEKFFGRNKA 332
                   FP +         +      ++DGN+  S GP +     L IVE++FG++  
Sbjct: 138 FAHLFGELFPEI--------MLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTR 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 4e-09
 Identities = 51/345 (14%), Positives = 96/345 (27%), Gaps = 100/345 (28%)

Query: 7   IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESI 66
              L     ++V   VE+ LR++     K +   + +  R     P       + +    
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQ----PSM----MTRMYIEQ 115

Query: 67  VKKQASDGRLYAAICVF---LAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY 123
             +  +D +++A   V      + L     L  L+  K V   G                
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVL-------------- 159

Query: 124 GKGKADEVSGARVMRANHGDEFTIAEFNPVQW-TF--DNSP-QILVPIAN---------- 169
           G GK        V  +    +        + W      NSP  +L  +            
Sbjct: 160 GSGKT--WVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 170 -GSEEMEAVI-----IIDILRR-------AKANVVVASVADKLEILA----SCQV----- 207
             S+    +      I   LRR           +V+ +V +  +       SC++     
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTR 273

Query: 208 -KLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQKESNRPYGAICA 263
            K V D L          L      L   +      K    ++     +  + P   +  
Sbjct: 274 FKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKY---LDC----RPQDLPREVLTT 325

Query: 264 SPALVLEPHGLLKGKKATAFPAM--------CNKLSN--QSEIEN 298
           +P   L    ++  +      A         C+KL+   +S +  
Sbjct: 326 NP-RRL---SII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 52/184 (28%)

Query: 143 DEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVI-----------IIDILRRAKANVV 191
           D F +  F+  +   D    IL       EE++ +I           +   L   +  +V
Sbjct: 27  DAF-VDNFD-CKDVQDMPKSIL-----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 192 VASVADKLEI----LASC------QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK- 240
              V + L I    L S       Q  ++  M I++  +L  D           Q FAK 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND----------NQVFAKY 129

Query: 241 ---SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL-KGKKATAFPAMCNKLSNQSEI 296
                +    L++     RP      +  +++   G+L  GK   A    C     Q ++
Sbjct: 130 NVSRLQPYLKLRQALLELRP------AKNVLI--DGVLGSGKTWVALDV-CLSYKVQCKM 180

Query: 297 ENRV 300
           + ++
Sbjct: 181 DFKI 184

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 33/136 (24%)

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL------EPHGLLK 276
           Y +     G G    + K+K L ++  K   +     AIC  P L            L++
Sbjct: 99  YKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIE 158

Query: 277 GKKATAFP-------------AMCNKLSNQSEIENR--------------VVVDGNLVTS 309
           GK  T FP                   + +                     + DG LVT 
Sbjct: 159 GKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTG 218

Query: 310 RGPGTSMEFALAIVEK 325
               +S    +  +  
Sbjct: 219 VNANSSYSTTIRAINA 234

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 52/211 (24%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVAS----------------VADKLEILASCQVKLVADM 213
           GSE  EAV+ +  + R+ A  V  +                + +   +L         ++
Sbjct: 21  GSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEI 80

Query: 214 L-IDEAAKLSYDLIVLPGGLGGAQAFAKS----------KKLVNMLKKQKESNRPYGAIC 262
             + +A     D +++PGG G A+  +            ++L  + +   ++ +P G +C
Sbjct: 81  RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMC 140

Query: 263 ASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENR-----------VVVD--GNLVTS 309
            +PA++  P       + T    +         +E             +VVD    +VT+
Sbjct: 141 IAPAML--PKIFDFPLRLTIGTDI----DTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTT 194

Query: 310 ---RGPGTSMEFALAIVEKFFGRNKALELAK 337
                     E A  I +K    ++ L LA+
Sbjct: 195 PAYMLAQNIAEAASGI-DKLV--SRVLVLAE 222

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 32/151 (21%)

Query: 206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
           +          + A   Y L+ + GG G    F  +K L N+ +   +     GA+C  P
Sbjct: 89  EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGP 148

Query: 266 ALVL---EPHG--LLKGKKATAFPA-------------MCNKLSNQSEIENR-------- 299
           A++    + +G  ++K K  T F                 +  +     +          
Sbjct: 149 AMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPE 208

Query: 300 ------VVVDGNLVTSRGPGTSMEFALAIVE 324
                   VDG +VT   P ++   A   ++
Sbjct: 209 DPWDDFCKVDGRIVTGANPQSATNTARDTIK 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	100.0
1u9c_A	224	APC35852; structural genomics, protein structure i	99.98
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.97
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.97
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.97
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.97
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.96
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.96
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.95
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	99.95
3er6_A	209	Putative transcriptional regulator protein; struct	99.94
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	99.94
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	99.94
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	99.94
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	99.94
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	99.94
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	99.93
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	99.93
3gra_A	202	Transcriptional regulator, ARAC family; transcript	99.93
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	99.93
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	99.91
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.91
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.9
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	99.89
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	99.88
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	99.88
2fex_A	188	Conserved hypothetical protein; structural genomic	99.88
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.88
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.86
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.85
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.82
1u9c_A	224	APC35852; structural genomics, protein structure i	99.81
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.79
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.78
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.78
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.76
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.74
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.68
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.66
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.61
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.55
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.32
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.07
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.07
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.8
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.27
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.24
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.14
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	98.07
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.07
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	97.98
3m3p_A	250	Glutamine amido transferase; structural genomics,	97.95
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.78
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	97.77
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	97.76
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.74
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.7
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.61
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.48
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.46
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.36
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.24
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.21
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.18
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.14
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.77
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	96.69
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.67
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	96.53
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.41
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.28
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	96.13
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	96.01
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	95.69
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	95.26
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	95.0
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	94.96
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	94.5
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	94.29
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	93.88
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	93.64
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	93.63
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	93.23
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	93.19
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	92.75
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	92.48
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	92.18
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	91.96
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	91.59
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	91.56
3m3p_A	250	Glutamine amido transferase; structural genomics,	91.3
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	91.11
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	89.99
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	89.36
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	88.09
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	83.84
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	83.66
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	82.47
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	80.04

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=8.7e-53  Score=398.70  Aligned_cols=295  Identities=23%  Similarity=0.307  Sum_probs=261.2

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCc---------------ceecCCCCEEEcCccccccc--cC------CCchhhhcc
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQL---------------RVDACHGVKIVADALVSNCR--DA------CGMPGATNL   57 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~---------------~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~   57 (344)
                      +|+..|+++|+++|++++++|++++.               .++++.|+.+.+|..+++++  ++      ||. +...+
T Consensus        26 ~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~  104 (396)
T 3uk7_A           26 YEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGR-APEYL  104 (396)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEEEECCCc-chhhc
Confidence            37889999999999999999998531               35677899999999998874  23      774 45667


Q ss_pred             cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCEEcCCCC
Q 019238           58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGP  108 (344)
Q Consensus        58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~  108 (344)
                      ..++.+++||+++++++++|++||+|+ ++|+++|||+||+                             |||+|||+|+
T Consensus       105 ~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~  183 (396)
T 3uk7_A          105 ALTASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATY  183 (396)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSG
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECchH-HHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcceEecCCEEEecCc
Confidence            889999999999999999999999999 5999999999987                             8999999999


Q ss_pred             CcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeeecCCCCeEEEEeCCCcchhHHHHHHHHHHhcCC
Q 019238          109 GTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKA  188 (344)
Q Consensus       109 ~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~  188 (344)
                      .+++||++++|+++.|++.                              .+++||+|+++|||++.|+..+++.|+++|+
T Consensus       184 ~~~~d~al~li~~l~g~~~------------------------------~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~  233 (396)
T 3uk7_A          184 EGHPEFIQLFVKALGGKIT------------------------------GANKRILFLCGDYMEDYEVKVPFQSLQALGC  233 (396)
T ss_dssp             GGHHHHHHHHHHHTTCEEE------------------------------CCCCEEEEECCTTEEHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHhccch------------------------------hccceEEEEecCCCcchhHHHHHHHHHHCCC
Confidence            9999999999999998641                              2468999999999999999999999999999


Q ss_pred             eEEEEEeCCCc---------------eeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHh
Q 019238          189 NVVVASVADKL---------------EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKE  253 (344)
Q Consensus       189 ~v~~~s~~~~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~  253 (344)
                      +++++|++++.               .+.++.|..+.++..+++.++.+||+|+||||.+ ...+..++.+++||+++++
T Consensus       234 ~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~-~~~~~~~~~~~~~l~~~~~  312 (396)
T 3uk7_A          234 QVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRA-PEYLALNEHVLNIVKEFMN  312 (396)
T ss_dssp             EEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcc-hhhhccCHHHHHHHHHHHH
Confidence            99999998862               1456789999999999998778999999999964 5557789999999999999


Q ss_pred             cCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCC----cEEEeCCeEeCCCcccHHHHHHHHHHHhc
Q 019238          254 SNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIEN----RVVVDGNLVTSRGPGTSMEFALAIVEKFF  327 (344)
Q Consensus       254 ~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~----~~v~dg~liT~~g~~~~~~~~~~li~~l~  327 (344)
                      ++|+|+++|+|+ ++|+++|||+||++|+||...+.++.  ..+.+.    .+|+|||+|||+|+.+.+||++++|+++.
T Consensus       313 ~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~~~~d~~l~li~~l~  391 (396)
T 3uk7_A          313 SEKPVASICHGQ-QILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALLG  391 (396)
T ss_dssp             TTCCEEEEGGGH-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSGGGHHHHHHHHHHHHT
T ss_pred             CCCEEEEEchHH-HHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCchhHHHHHHHHHHHhc
Confidence            999999999997 45999999999999999999888765  334443    59999999999999999999999999998


Q ss_pred             CH
Q 019238          328 GR  329 (344)
Q Consensus       328 g~  329 (344)
                      |+
T Consensus       392 ~~  393 (396)
T 3uk7_A          392 IQ  393 (396)
T ss_dssp             CE
T ss_pred             cc
Confidence            74

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-39  Score=276.48  Aligned_cols=185  Identities=42%  Similarity=0.655  Sum_probs=170.6

Q ss_pred             CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ++++||+|+++|||++.|+..++++|+++|++++++|++++.++.+++|+.+.++..+++..+.+||+|+||||......
T Consensus         3 ~m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~   82 (190)
T 4e08_A            3 HMSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNA   82 (190)
T ss_dssp             -CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHH
T ss_pred             CCCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHH
Confidence            35689999999999999999999999999999999999983389999999999999999987778999999999654566


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC-CcC-CCcEEEeCCeEeCCCcccH
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ-SEI-ENRVVVDGNLVTSRGPGTS  315 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~-~~~-~~~~v~dg~liT~~g~~~~  315 (344)
                      +..++.+++||+++++++|+|+++|+|+. +|+++|||+||++|+||...+.|++. .+. ++.+|+|||+|||+|+.++
T Consensus        83 ~~~~~~~~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~  161 (190)
T 4e08_A           83 MGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTA  161 (190)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGH
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHH
Confidence            78899999999999999999999999975 59999999999999999999999873 344 5899999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          316 MEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       316 ~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +||+++||++++|++.|+++++.|+++|
T Consensus       162 ~d~al~li~~~~g~~~a~~va~~l~~~~  189 (190)
T 4e08_A          162 YEFALKIAEELAGKEKVQEVAKGLLVAY  189 (190)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhCccc
Confidence            9999999999999999999999999987

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=2.5e-38  Score=273.40  Aligned_cols=184  Identities=39%  Similarity=0.612  Sum_probs=169.0

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      +++||+|+++|||++.|+..++++|+.+|++++++|++++.++.+++|+.+.++..++++++.+||+|+||||......+
T Consensus         8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l   87 (208)
T 3ot1_A            8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAF   87 (208)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHH
T ss_pred             cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHH
Confidence            56899999999999999999999999999999999998623999999999999999999877799999999997546667


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEe--CCeEeCCCcccHH
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVD--GNLVTSRGPGTSM  316 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~d--g~liT~~g~~~~~  316 (344)
                      ..++.+++||+++++++|+|+++|+|+.++|+++|||+||++|+||...+.|++..+.++.+++|  ||+|||+|+.+++
T Consensus        88 ~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~~  167 (208)
T 3ot1_A           88 ADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTAL  167 (208)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGHH
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHHH
Confidence            88999999999999999999999999734599999999999999999999998877777788875  5999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          317 EFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       317 ~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      ||+++||++++|++.|+++++.|+++
T Consensus       168 d~al~lv~~l~G~~~a~~va~~l~~~  193 (208)
T 3ot1_A          168 EFALAMIALLAGVELAQHVAAPMVLH  193 (208)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhheeC
Confidence            99999999999999999999999984

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=3.2e-38  Score=270.61  Aligned_cols=184  Identities=41%  Similarity=0.586  Sum_probs=168.9

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccc-cCCCccEEEEcCCccchHh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA-AKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~-~~~~~D~liipGG~~~~~~  237 (344)
                      +++||+|+++|||++.|+..++++|+++|++++++|++++.++.+++|+.+.++..+++. ++.+||+|+||||......
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            458999999999999999999999999999999999987558999999999999999987 7789999999999644566


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC---CcCCCcEEEeCCeEeCCCccc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ---SEIENRVVVDGNLVTSRGPGT  314 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~---~~~~~~~v~dg~liT~~g~~~  314 (344)
                      +..++.+++||+++++++|+|+++|+|+. +|+++|+|+||++|+||...+.|++.   .+.++.+|+|||+|||+|+.+
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~-~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a  160 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT  160 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGG
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHH
Confidence            77899999999999999999999999975 59999999999999999999999763   267889999999999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          315 SMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       315 ~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      ++||++++|+++.|++.|+++++.|.+++
T Consensus       161 ~~d~al~li~~l~g~~~a~~va~~~~~~~  189 (197)
T 2rk3_A          161 SFEFALAIVEALNGKEVAAQVKAPLVLKD  189 (197)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHGGGTC--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999875

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=1.2e-37  Score=268.53  Aligned_cols=184  Identities=43%  Similarity=0.632  Sum_probs=171.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCc--eeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL--EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~--~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ++||+|+++|||++.|+..++++|+++|++++++|++++.  ++.+++|+.+.++..+++.++.+||+|+||||......
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            5799999999999999999999999999999999999854  89999999999999999987789999999999655666


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCe--EeCCCcccH
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNL--VTSRGPGTS  315 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l--iT~~g~~~~  315 (344)
                      +..++.+++||+++++++|+|+++|+|++++|+++|||+||++|+||...+.+++..+.+..+|+|||+  |||+|+.++
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~  161 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  161 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence            778999999999999999999999999734599999999999999999999999877888899999999  999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          316 MEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       316 ~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      ++|++++|+++.|++.|+++++.|++++
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~l~~~~  189 (205)
T 2ab0_A          162 IDFGLKIIDLLVGREKAHEVASQLVMAA  189 (205)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCT
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccCC
Confidence            9999999999999999999999999975

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=8.1e-38  Score=266.96  Aligned_cols=182  Identities=26%  Similarity=0.409  Sum_probs=164.0

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC--ceeeeccceeeeeccccccccC-----CCccEEEEcCC
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK--LEILASCQVKLVADMLIDEAAK-----LSYDLIVLPGG  231 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~--~~v~~~~g~~v~~~~~~~~~~~-----~~~D~liipGG  231 (344)
                      +|+||+|+++|||++.|+..|+++|+++|+++++++...+  .++.+++|+.+.+|..++++..     .+||+|+||||
T Consensus         3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG   82 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG   82 (194)
T ss_dssp             --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence            5789999999999999999999999999999999987542  3688899999999999988743     35999999999


Q ss_pred             ccchHhhhcCHHHHHHHHHHHhc-CCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEe
Q 019238          232 LGGAQAFAKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVT  308 (344)
Q Consensus       232 ~~~~~~l~~~~~l~~~l~~~~~~-~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT  308 (344)
                      ..+...+.+++.+++||++++++ +|+|+++|+|+ + |+.+|+|+||++|+||...+.+++  ..+.++++|+|||+||
T Consensus        83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~-l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiT  160 (194)
T 4gdh_A           83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-L-TAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLIT  160 (194)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-H-HHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEE
T ss_pred             chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-c-chhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEE
Confidence            76678888999999999999865 79999999996 5 788899999999999999999986  4678899999999999


Q ss_pred             CCCcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          309 SRGPGTSMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       309 ~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      |+|+.++++|+++||++++|++.|+++++.|+++
T Consensus       161 s~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          161 SQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             ECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             CCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999875

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=4.7e-38  Score=271.66  Aligned_cols=181  Identities=15%  Similarity=0.187  Sum_probs=162.9

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG  231 (344)
                      +++||+|+++|||++.|+..+.++|+.+|       |+++++|.+++ +|.+++|+.+.+|..+++.  ++||+|+||||
T Consensus         7 ~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~--~~~D~livpGg   83 (209)
T 3er6_A            7 KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSF--DFTNILIIGSI   83 (209)
T ss_dssp             CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred             CCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence            46899999999999999999999999885       89999999986 9999999999999999987  78999999999


Q ss_pred             ccchH-hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CCc-CCCcEEEeCC
Q 019238          232 LGGAQ-AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QSE-IENRVVVDGN  305 (344)
Q Consensus       232 ~~~~~-~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~~-~~~~~v~dg~  305 (344)
                      ..... .+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++    ..+ .++.+|+|||
T Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~  162 (209)
T 3er6_A           84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGI-FVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGN  162 (209)
T ss_dssp             SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETT
T ss_pred             CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCC
Confidence            64322 23679999999999999999999999997 55999999999999999998888865    233 4567999999


Q ss_pred             eEeCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          306 LVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       306 liT~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +|||+|+.+++||+++||++++|++.|+++++.|++++
T Consensus       163 iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  200 (209)
T 3er6_A          163 VYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIE  200 (209)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC--
T ss_pred             EEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999975

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=1.3e-37  Score=272.59  Aligned_cols=180  Identities=25%  Similarity=0.357  Sum_probs=167.2

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHh-cCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      +++||+|+++|||++.|+..++++|+. .+++++++|.+++ +|.+++|+.+.++.++++.  ++||+|+||||.+ ...
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g-~~~   79 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADC--PPLDVICIPGGTG-VGA   79 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTC--CCCSEEEECCSTT-HHH
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHC--CcCCEEEECCCCC-hhh
Confidence            568999999999999999999999999 7899999999986 9999999999999999987  6799999999964 556


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccH
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTS  315 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~  315 (344)
                      +..++.+++||+++++++++|+++|+|+ ++|+++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|++++
T Consensus        80 ~~~~~~l~~~lr~~~~~g~~v~aiC~G~-~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~  158 (231)
T 3noq_A           80 LMEDPQALAFIRQQAARARYVTSVSTGS-LVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAG  158 (231)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHH-HHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHH
T ss_pred             hccCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHH
Confidence            7789999999999999999999999997 55999999999999999999998875  34568899999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          316 MEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       316 ~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +||+++||++++|++.|+++++.|+|++
T Consensus       159 ~d~aL~li~~~~G~~~A~~va~~l~~~~  186 (231)
T 3noq_A          159 IDFALTLAAELFDAATAQRVQLQLEYAP  186 (231)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHhceeCC
Confidence            9999999999999999999999999974

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=7.5e-38  Score=270.69  Aligned_cols=180  Identities=22%  Similarity=0.342  Sum_probs=165.5

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhc--CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRA--KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~--~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      +++||+|+++|||++.|+..++++|+++  +++++++|++++ +|.+++|+.+.+|..+++.  ++||+|+||||.+ ..
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~-~~   78 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDE--NIEKILFVPGGSG-TR   78 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCS--SSEEEEEECCSTH-HH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhC--CCCCEEEECCCcc-hh
Confidence            5689999999999999999999999998  499999999986 9999999999999999887  5699999999964 55


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC----Cc-CCCcEEEeCCeEeCCC
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ----SE-IENRVVVDGNLVTSRG  311 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~----~~-~~~~~v~dg~liT~~g  311 (344)
                      .+..++.+++||+++++++|+|+++|+|+ ++|+++|||+||++|+||...+.|++.    .+ .++.+|+|||+|||+|
T Consensus        79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G~-~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G  157 (211)
T 3mgk_A           79 EKVNDDNFINFIGNMVKESKYIISVCTGS-ALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSG  157 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHCSEEEECTTHH-HHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECS
T ss_pred             hhcCCHHHHHHHHHHHHcCCEEEEEchHH-HHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCC
Confidence            66789999999999999999999999997 559999999999999999999998763    23 4789999999999999


Q ss_pred             cccHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          312 PGTSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       312 ~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +.+++||+++||++++|++.|+++++.|++++
T Consensus       158 ~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~  189 (211)
T 3mgk_A          158 VSAGIDMTLGFIEDLIGKEKALEISRSIEYFW  189 (211)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHhcEECC
Confidence            99999999999999999999999999999985

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=4.1e-38  Score=270.61  Aligned_cols=179  Identities=20%  Similarity=0.283  Sum_probs=160.8

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcC------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAK------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL  232 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~  232 (344)
                      +++||+|+++|||++.|+..+.++|+.+|      |+++++|.+++ ++.+++|+.+.+| ++++.+.++||+|+||||.
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~   81 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGGL   81 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECCT
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCCC
Confidence            46899999999999999999999999987      99999999986 9999999999999 9998766899999999996


Q ss_pred             cchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CCcCCCcEEEeCCeEe
Q 019238          233 GGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QSEIENRVVVDGNLVT  308 (344)
Q Consensus       233 ~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~~~~~~~v~dg~liT  308 (344)
                      ... .. . +.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++    ..+.++.+|+|||+||
T Consensus        82 ~~~-~~-~-~~l~~~l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiT  157 (202)
T 3gra_A           82 RTP-LK-Y-PELDRLLNDCAAHGMALGGLWNGA-WFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLS  157 (202)
T ss_dssp             TCC-SC-C-TTHHHHHHHHHHHTCEEEEETTHH-HHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEE
T ss_pred             chh-hc-c-HHHHHHHHHHHhhCCEEEEECHHH-HHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEE
Confidence            533 22 4 899999999999999999999997 55999999999999999999887765    3456679999999999


Q ss_pred             CCCcccHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          309 SRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       309 ~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      |+|+++++||+++||++++|++.|+++++.|++++
T Consensus       158 s~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  192 (202)
T 3gra_A          158 AASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSG  192 (202)
T ss_dssp             ESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCc
Confidence            99999999999999999999999999999999986

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=2.7e-37  Score=273.46  Aligned_cols=182  Identities=20%  Similarity=0.290  Sum_probs=167.1

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHH-HhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDIL-RRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l-~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      +++||+|+++|||++.|+..++++| +..+++++++|.+++ +|.+++|+.+.+|..++++. ..||+|+||||..+...
T Consensus        22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            4589999999999999999999999 567899999999997 99999999999999999875 47899999999623456


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccH
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTS  315 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~  315 (344)
                      +..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|++++
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~-~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~  178 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGS-LILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAG  178 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHH-HHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHH
Confidence            7789999999999999999999999997 55999999999999999999998875  34568899999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          316 MEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       316 ~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +||+++||++++|++.|+++++.|+|++
T Consensus       179 idlaL~lv~~l~G~~~A~~va~~l~~~~  206 (253)
T 3ewn_A          179 LDFGLSMVAELRDQTYAECAQLMSEYDP  206 (253)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHhcccCC
Confidence            9999999999999999999999999974

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=4.1e-37  Score=257.85  Aligned_cols=166  Identities=20%  Similarity=0.245  Sum_probs=155.0

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      +++|.|++.+||++.|+..|+++|+++|++++++|++++ ++++++|..+.+|..++++++.+||+|+||||++ ...+.
T Consensus         8 ~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g-~~~l~   85 (177)
T 4hcj_A            8 NNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIG-CITLW   85 (177)
T ss_dssp             CEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSGG-GGGGT
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCcc-HHHHh
Confidence            466778889999999999999999999999999999997 9999999999999999999889999999999975 56788


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHH
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSME  317 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~  317 (344)
                      .++.+++||+++++++|+|++||+|++ +|+++|||+||++|+||...+.+++  ..+.++++|+|||+|||+|+.++++
T Consensus        86 ~~~~~~~~l~~~~~~~k~iaaIC~g~~-~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~  164 (177)
T 4hcj_A           86 DDWRTQGLAKLFLDNQKIVAGIGSGVV-IMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKD  164 (177)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHH
T ss_pred             hCHHHHHHHHHHHHhCCEEEEecccHH-HHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHH
Confidence            999999999999999999999999985 4999999999999999999999876  5678899999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 019238          318 FALAIVEKFFG  328 (344)
Q Consensus       318 ~~~~li~~l~g  328 (344)
                      |+++|++.|.+
T Consensus       165 ~a~~lve~L~s  175 (177)
T 4hcj_A          165 FANAVVGVLNS  175 (177)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999864

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=7.6e-36  Score=258.48  Aligned_cols=178  Identities=21%  Similarity=0.246  Sum_probs=161.6

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHH--------hcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILR--------RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~--------~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG  231 (344)
                      |+||+|+++|||++.|+..+.++|+        +.+++++++|++++ +|.+++|+.+.+|..++++.+.+||+|+||||
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG   83 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPGG   83 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECCC
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECCC
Confidence            6899999999999999999999999        67899999999997 99999999999999999987779999999999


Q ss_pred             ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCc-Cchhhhcc-----CCcCCCcEEEeCC
Q 019238          232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP-AMCNKLSN-----QSEIENRVVVDGN  305 (344)
Q Consensus       232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~-~~~~~~~~-----~~~~~~~~v~dg~  305 (344)
                      ...  .+..++.+++||+++++++++|+++|+|+ ++|+++|||+||++|+|| ...+.|++     ..+.++.+|+|||
T Consensus        84 ~~~--~~~~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~  160 (212)
T 3efe_A           84 TTW--SEEIHQPILERIGQALKIGTIVAAICGAT-DALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDAN  160 (212)
T ss_dssp             SCT--TSGGGHHHHHHHHHHHHHTCEEEEETHHH-HHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETT
T ss_pred             Ccc--ccccCHHHHHHHHHHHHCCCEEEEEcHHH-HHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECC
Confidence            642  34688999999999999999999999997 559999999999999996 66666653     3567899999999


Q ss_pred             eEeCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          306 LVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       306 liT~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +|||+|++ ++||+++||+++.|+ .++++++.+.+.+
T Consensus       161 iiTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~  196 (212)
T 3efe_A          161 LVTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNK  196 (212)
T ss_dssp             EEEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHH
T ss_pred             EEECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHc
Confidence            99999986 999999999999998 9999999998764

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=2.2e-35  Score=258.60  Aligned_cols=178  Identities=21%  Similarity=0.318  Sum_probs=161.6

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      +++||+|+++|||++.|+..++++|+..+  ++++++| +++ ++.+++|+.+.++..+++.  .+||+|+||||..+..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~   94 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIP   94 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHH
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccCHh
Confidence            46899999999999999999999999976  8999999 876 9999999999999999885  7899999999942345


Q ss_pred             hhhcCHHHHHHHHHHHhcCC-cEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcc
Q 019238          237 AFAKSKKLVNMLKKQKESNR-PYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPG  313 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k-~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~  313 (344)
                      .+..++.+++||  ++.+++ +|+++|+|+. +|+++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|+.
T Consensus        95 ~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~-lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~  171 (236)
T 3bhn_A           95 AALQDENFMSAL--KLDPSRQLIGSICAGSF-VLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCL  171 (236)
T ss_dssp             HHHTCHHHHHHC--CCCTTTCEEEEETTHHH-HHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGG
T ss_pred             hhccCHHHHHHH--HhCCCCCEEEEEcHHHH-HHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHH
Confidence            567899999999  667777 9999999975 5999999999999999999999976  456889999999999999999


Q ss_pred             cHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          314 TSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       314 ~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      +++||+++||++++|++.|+++++.|++++
T Consensus       172 a~~dlal~lIe~l~G~~~A~~va~~l~~~~  201 (236)
T 3bhn_A          172 SLLYLVGWLAERLFDSVKRKQIQNQLIPAG  201 (236)
T ss_dssp             GHHHHHHHHHHHHSCHHHHHHHHTTTSCTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhcccCC
Confidence            999999999999999999999999999986

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=2.7e-35  Score=246.08  Aligned_cols=164  Identities=27%  Similarity=0.445  Sum_probs=152.4

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      +|||+|+++|||++.|+..+++.|+.+|++++++|++++ ++.+++|+.+.++..+++.++.+||+|+||||.+ ...+.
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~~~   79 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA-PEIVR   79 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH-HHHHT
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCcC-HHHhc
Confidence            589999999999999999999999999999999999996 9999999999999999998767899999999964 55667


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHH
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSME  317 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~  317 (344)
                      .++.+++||+++++++|+|+++|+|+. +|+++|+|+||++|+||...+.|++  ..+.++.+|+|||+|||+|+.++++
T Consensus        80 ~~~~l~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d  158 (168)
T 3l18_A           80 LNEKAVMITRRMFEDDKPVASICHGPQ-ILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYA  158 (168)
T ss_dssp             TCHHHHHHHHHHHHTTCCEEEETTTHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECHhHH-HHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHH
Confidence            899999999999999999999999975 5999999999999999999999987  3457889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019238          318 FALAIVEKF  326 (344)
Q Consensus       318 ~~~~li~~l  326 (344)
                      |++++|+++
T Consensus       159 ~~l~li~~l  167 (168)
T 3l18_A          159 WMREFVKLL  167 (168)
T ss_dssp             HHHHHGGGC
T ss_pred             HHHHHHHhh
Confidence            999999876

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=3.5e-35  Score=250.30  Aligned_cols=173  Identities=25%  Similarity=0.385  Sum_probs=155.6

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee-----ccceeeeeccccccccCCCccEEEEcCCcc
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----SCQVKLVADMLIDEAAKLSYDLIVLPGGLG  233 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----~~g~~v~~~~~~~~~~~~~~D~liipGG~~  233 (344)
                      +++||+|+++|||++.|+..+.++|+.+|+++++++++++ ++.+     +.|+.+.++..+++.++.+||+|+||||..
T Consensus         8 ~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3589999999999999999999999999999999999997 8887     779999999999988777899999999964


Q ss_pred             chHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCC
Q 019238          234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRG  311 (344)
Q Consensus       234 ~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g  311 (344)
                      ....+..++.+++||+++++++++|+++|+|+. +|+++|||+||++|+||...+.|++  ..+.+..+++|||+|||+|
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~-~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g  165 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPW-SLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRK  165 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTH-HHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSS
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHH-HHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCC
Confidence            456677899999999999999999999999975 5999999999999999999998876  3455666788999999999


Q ss_pred             cccHHHHHHHHHHHh-cCHHHHH
Q 019238          312 PGTSMEFALAIVEKF-FGRNKAL  333 (344)
Q Consensus       312 ~~~~~~~~~~li~~l-~g~~~a~  333 (344)
                      +.++.+|++++|+++ .|++.|+
T Consensus       166 ~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          166 PDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             GGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             hhhHHHHHHHHHHHHhccccccc
Confidence            999999999999999 8887664

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=1.8e-34  Score=248.15  Aligned_cols=175  Identities=25%  Similarity=0.330  Sum_probs=153.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |+||+|+++|||++.|+..+.+.|+++ +++++++|++++  +.+++|+.+.++..+++. +.+||+|+||||.+ ... 
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~-~~~-   77 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDS-WSN-   77 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBSC-CCC-
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCCC-hhh-
Confidence            689999999999999999999999998 999999999984  899999999999999987 45899999999964 333 


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCch-hhhc----cCCcCCCcEEEeCCeEeCCCcc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMC-NKLS----NQSEIENRVVVDGNLVTSRGPG  313 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~-~~~~----~~~~~~~~~v~dg~liT~~g~~  313 (344)
                       .++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||... ..++    +..+.++.+|+|||+|||+|++
T Consensus        78 -~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a  155 (206)
T 3f5d_A           78 -DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA  155 (206)
T ss_dssp             -CCHHHHHHHHHHHHTTCCEEEETHHH-HHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC
T ss_pred             -cCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch
Confidence             89999999999999999999999997 559999999999999998321 1121    2456788999999999999986


Q ss_pred             cHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          314 TSMEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       314 ~~~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                       ++||+++||+.+ +.+.|+++++.|++.+
T Consensus       156 -~id~al~li~~l-~~~~a~~va~~~~~~~  183 (206)
T 3f5d_A          156 -PIEFTNLILEMI-DFDTPENIEKMMYMNR  183 (206)
T ss_dssp             -HHHHHHHHHHHT-TCSCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHh-CcchHHHHHHHhhhhh
Confidence             999999999975 5789999999998753

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=8.1e-34  Score=242.30  Aligned_cols=171  Identities=25%  Similarity=0.333  Sum_probs=154.8

Q ss_pred             eeecCCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCce-eeeccce-eeeeccccccccCCCccEEEEcCC
Q 019238          154 QWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE-ILASCQV-KLVADMLIDEAAKLSYDLIVLPGG  231 (344)
Q Consensus       154 ~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~-v~~~~g~-~v~~~~~~~~~~~~~~D~liipGG  231 (344)
                      .+...+++||+|+++|||++.|+..+.+.|+++|+++++++++++ + +.+++|+ .+.++..+++.++.+||+|+||||
T Consensus        17 ~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG   95 (193)
T 1oi4_A           17 YKKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG   95 (193)
T ss_dssp             TTTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred             ehhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence            334456789999999999999999999999999999999999987 6 9999999 999999999886678999999999


Q ss_pred             ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCC-eEe
Q 019238          232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGN-LVT  308 (344)
Q Consensus       232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~-liT  308 (344)
                      . +...+..++.+++||+++++++|+|+++|+|+. +|+++|+|+||++|+||...+.|++  ..+.++.+|+||| +||
T Consensus        96 ~-~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~-lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiT  173 (193)
T 1oi4_A           96 H-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVT  173 (193)
T ss_dssp             T-HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHH-HHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEE
T ss_pred             c-CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEE
Confidence            5 456667789999999999999999999999974 5999999999999999999999976  4566778899999 999


Q ss_pred             CCCcccHHHHHHHHHHHhc
Q 019238          309 SRGPGTSMEFALAIVEKFF  327 (344)
Q Consensus       309 ~~g~~~~~~~~~~li~~l~  327 (344)
                      |+|+.+++||+++||+++.
T Consensus       174 s~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          174 SRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             ESSGGGHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHHHhh
Confidence            9999999999999999874

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=4.9e-34  Score=242.79  Aligned_cols=176  Identities=20%  Similarity=0.293  Sum_probs=156.4

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHh-cCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |+||+|+++|||++.|+..+.+.|++ .+++++++|++++ ++.+++|+.+.++..+++..+.+||+|+||||.. . ..
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~-~~   77 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-W-EK   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-H-HH
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-c-cc
Confidence            47999999999999999999999999 9999999999987 9999999999999999998666899999999964 2 34


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----C-CcCCCc-EEEeCCeEeCCCc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----Q-SEIENR-VVVDGNLVTSRGP  312 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~-~~~~~~-~v~dg~liT~~g~  312 (344)
                      ..++.+++||+++++++|+|+++|+|+. +|+++|||+||++|+||...+.+++    . .+.++. +|+|||+|||+|+
T Consensus        78 ~~~~~l~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~  156 (188)
T 2fex_A           78 GTAADLGGLVKRFRDRDRLVAGICAAAS-ALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS  156 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHH-HHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT
T ss_pred             cccHHHHHHHHHHHHCCCEEEEECHHHH-HHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCc
Confidence            6789999999999999999999999975 5999999999999999986665433    2 456778 9999999999999


Q ss_pred             ccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          313 GTSMEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       313 ~~~~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      + ++||++++|+++.|.+.++  ++.+.|-
T Consensus       157 ~-~~d~al~lv~~l~~~~~~~--~~~~~~~  183 (188)
T 2fex_A          157 A-PVSFAVEILKSLGLFGPEA--EAELQIF  183 (188)
T ss_dssp             C-HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred             c-HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence            6 8999999999999999887  7666553

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=1.6e-34  Score=266.55  Aligned_cols=178  Identities=29%  Similarity=0.410  Sum_probs=162.6

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCce-eeeccce-eeeeccccccccCCCccEEEEcCCccchH
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE-ILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~-v~~~~g~-~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      +++||+|+++|||.+.|+..++++|+.+|++++++|++++ + +.+++|+ .+.++..++++++.+||+|+||||.+ ..
T Consensus         9 ~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g-~~   86 (365)
T 3fse_A            9 GKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA-PD   86 (365)
T ss_dssp             --CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH-HH
T ss_pred             CceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc-hh
Confidence            4689999999999999999999999999999999999997 6 9999999 99999999998767899999999974 55


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCccc
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGT  314 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~  314 (344)
                      .+..++.+++||+++++++++|+++|+|+ ++|+++|||+||++|+||...+.|++  ..+.+..+|+|||+|||+|+.+
T Consensus        87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~-~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a  165 (365)
T 3fse_A           87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGD  165 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGG
T ss_pred             hccCCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHH
Confidence            67789999999999999999999999997 55999999999999999999999875  4567888999999999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhh
Q 019238          315 SMEFALAIVEKFFGRNKALELAKIL  339 (344)
Q Consensus       315 ~~~~~~~li~~l~g~~~a~~~a~~l  339 (344)
                      +++|+++||+++.|.+.+.++++..
T Consensus       166 ~~d~al~lIe~L~g~~~A~~lA~~~  190 (365)
T 3fse_A          166 LAIFTTAILSRLGYGGKDAALPDEK  190 (365)
T ss_dssp             HHHHHHHHHHHTTCCCSSSCCCCTT
T ss_pred             HHHHHHHHHHHhcCchHHHHHhhhh
Confidence            9999999999999998888777554

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=100.00  E-value=1.1e-32  Score=231.79  Aligned_cols=161  Identities=22%  Similarity=0.327  Sum_probs=144.0

Q ss_pred             CCCeEEEEeCC---C---cchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccc--cCCCccEEEEcC
Q 019238          159 NSPQILVPIAN---G---SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA--AKLSYDLIVLPG  230 (344)
Q Consensus       159 ~~~~v~ill~~---g---~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~--~~~~~D~liipG  230 (344)
                      |++||+|+++|   |   |++.|+..      +.+++++++|++++.++.+++|+.+.++..+++.  ++.+||+|+|||
T Consensus         1 m~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpG   74 (175)
T 3cne_A            1 MAKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSC   74 (175)
T ss_dssp             -CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEEC
T ss_pred             CCcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECC
Confidence            35899999999   9   88877776      6799999999985349999999999999999987  678899999999


Q ss_pred             C--ccchHhhh---cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCC
Q 019238          231 G--LGGAQAFA---KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGN  305 (344)
Q Consensus       231 G--~~~~~~l~---~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~  305 (344)
                      |  ......+.   .++.+++||+++++++|+|+++|+|+. +|+++|||+||++|+||...+.|++..+.++.+|+|||
T Consensus        75 G~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~-~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~  153 (175)
T 3cne_A           75 GDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAM-MFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGN  153 (175)
T ss_dssp             CTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHH-HHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETT
T ss_pred             CcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCC
Confidence            9  63344445   788999999999999999999999975 59999999999999999999999887778899999999


Q ss_pred             eEeCCCcccHHHHHHHHHHHh
Q 019238          306 LVTSRGPGTSMEFALAIVEKF  326 (344)
Q Consensus       306 liT~~g~~~~~~~~~~li~~l  326 (344)
                      +|||+|+.+++||++++|+++
T Consensus       154 iiTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          154 FFTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EEEESSGGGGGGTHHHHHHHH
T ss_pred             EEeCCChHHHHHHHHHHHHHh
Confidence            999999999999999999986

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.98  E-value=3.8e-32  Score=237.54  Aligned_cols=170  Identities=25%  Similarity=0.339  Sum_probs=147.8

Q ss_pred             CCCeEEEEeC----------CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeecc--------c-----eeeeecccc
Q 019238          159 NSPQILVPIA----------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILASC--------Q-----VKLVADMLI  215 (344)
Q Consensus       159 ~~~~v~ill~----------~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~--------g-----~~v~~~~~~  215 (344)
                      |++||+|+++          +||++.|+..++++|+++|++++++|++++ ++.+..        |     ..+.++..+
T Consensus         4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l   82 (224)
T 1u9c_A            4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   82 (224)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCCh
Confidence            3479999999          999999999999999999999999999986 666542        3     678889899


Q ss_pred             ccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC------CCCCCeeeeCcCchhh
Q 019238          216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLKGKKATAFPAMCNK  289 (344)
Q Consensus       216 ~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG------lL~g~~~T~~~~~~~~  289 (344)
                      +++.+.+||+|+||||......+..++.+++||+++++++|+|++||+|+. +|+++|      ||+||++|+||...+.
T Consensus        83 ~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~-~La~ag~~~g~~lL~Gr~~T~~~~~~~~  161 (224)
T 1u9c_A           83 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEER  161 (224)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHH
T ss_pred             HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHH-HHHHccccCCCceecCcEEecCCCHHHh
Confidence            988777999999999976545678899999999999999999999999975 599999      9999999999987654


Q ss_pred             ---------------hcc--CCcCCC-----cEEEeCCeEeCCCcccHHHHHHHHHHHhcCHH
Q 019238          290 ---------------LSN--QSEIEN-----RVVVDGNLVTSRGPGTSMEFALAIVEKFFGRN  330 (344)
Q Consensus       290 ---------------~~~--~~~~~~-----~~v~dg~liT~~g~~~~~~~~~~li~~l~g~~  330 (344)
                                     |++  ..+.+.     .+|+|||+|||+|+.++++|+++||+++.|++
T Consensus       162 ~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~  224 (224)
T 1u9c_A          162 EVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  224 (224)
T ss_dssp             HHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             hccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence                           332  334444     49999999999999999999999999999863

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.97  E-value=2.7e-30  Score=227.30  Aligned_cols=171  Identities=19%  Similarity=0.287  Sum_probs=143.4

Q ss_pred             CCeEEEEeC------------CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceee---------------------eccc
Q 019238          160 SPQILVPIA------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEIL---------------------ASCQ  206 (344)
Q Consensus       160 ~~~v~ill~------------~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~---------------------~~~g  206 (344)
                      |+||+|++.            +||+..|+..++++|+++|++++++|++++.++.                     ++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            578888887            4899999999999999999999999998863231                     1234


Q ss_pred             eeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-------CCCCCCe
Q 019238          207 VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLKGKK  279 (344)
Q Consensus       207 ~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-------GlL~g~~  279 (344)
                      ..+.++.+++++++.+||+|+||||++....+..++.+.+||+++++++|+|++||+|+++ |+++       |||+||+
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~-La~a~~~~~g~gll~G~~  161 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLL-FDGLIDIKTTRPLIEGKA  161 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GTTCBCTTTSSBTTTTCE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHH-HHHhhccccCCceeCCce
Confidence            5677888899998889999999999865577889999999999999999999999999865 9988       9999999


Q ss_pred             eeeCcCchhh-------------------hcc--CCcCC------CcEEEeCCeEeCCCcccHHHHHHHHHHHhcCHHH
Q 019238          280 ATAFPAMCNK-------------------LSN--QSEIE------NRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNK  331 (344)
Q Consensus       280 ~T~~~~~~~~-------------------~~~--~~~~~------~~~v~dg~liT~~g~~~~~~~~~~li~~l~g~~~  331 (344)
                      +|+||...+.                   +++  +.+.+      ..+|+||||||++|+.++.+|+++||+.+.+-+.
T Consensus       162 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~~  240 (244)
T 3kkl_A          162 ITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVEH  240 (244)
T ss_dssp             ECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC---
T ss_pred             ecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhhh
Confidence            9999987543                   222  33443      6899999999999999999999999999987653

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.97  E-value=1.9e-30  Score=229.22  Aligned_cols=167  Identities=19%  Similarity=0.293  Sum_probs=144.2

Q ss_pred             CCeEEEEeC------------CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee----------------------cc
Q 019238          160 SPQILVPIA------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILA----------------------SC  205 (344)
Q Consensus       160 ~~~v~ill~------------~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~----------------------~~  205 (344)
                      |+||+|++.            +|++..|+..++++|+++|++++++|++++ ++..                      +.
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence            479999997            689999999999999999999999999986 4321                      23


Q ss_pred             ceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-------CCCCC
Q 019238          206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-------LLKGK  278 (344)
Q Consensus       206 g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-------lL~g~  278 (344)
                      |..+.++..++++++.+||+|+||||++....+..++.+++||+++++++|+|++||+|+. +|+++|       ||+||
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~ag~~~~g~~lL~G~  160 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-IFDGLTDKKTGRPLIEGK  160 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTTTC
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHH-HHHhcCcccCCceeeCCc
Confidence            6678888889988778899999999986566678899999999999999999999999985 599999       99999


Q ss_pred             eeeeCcCchhh-------------------hc--cCCcC------CCcEEEeCCeEeCCCcccHHHHHHHHHHHhcC
Q 019238          279 KATAFPAMCNK-------------------LS--NQSEI------ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG  328 (344)
Q Consensus       279 ~~T~~~~~~~~-------------------~~--~~~~~------~~~~v~dg~liT~~g~~~~~~~~~~li~~l~g  328 (344)
                      ++|+||...+.                   ++  +..+.      ++.+|+|||+|||+|+.++++|+++||+++..
T Consensus       161 ~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          161 SITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             EECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             EEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            99999987665                   22  23344      78899999999999999999999999998854

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.97  E-value=4.4e-30  Score=232.10  Aligned_cols=171  Identities=21%  Similarity=0.284  Sum_probs=147.3

Q ss_pred             CCeEEEEeCC--------------CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee--------------cc---cee
Q 019238          160 SPQILVPIAN--------------GSEEMEAVIIIDILRRAKANVVVASVADKLEILA--------------SC---QVK  208 (344)
Q Consensus       160 ~~~v~ill~~--------------g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~--------------~~---g~~  208 (344)
                      .+||+|++.+              ||++.|+..++++|+++|++++++|++++ ++..              ..   |..
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~  126 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  126 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccce
Confidence            4799999985              79999999999999999999999999986 6652              22   778


Q ss_pred             eeeccccccc-----cCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc----CCCCCCe
Q 019238          209 LVADMLIDEA-----AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH----GLLKGKK  279 (344)
Q Consensus       209 v~~~~~~~~~-----~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a----GlL~g~~  279 (344)
                      +.++..++++     ++.+||+||||||++....+..++.+++||+++++++|+|++||+|+++ |+++    |||+||+
T Consensus       127 l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~-La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          127 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA-FLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GGGGTTSCCTTTTCE
T ss_pred             ecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHH-HHhhcccCccCCCCE
Confidence            8888888884     4689999999999765446788999999999999999999999999865 6666    5999999


Q ss_pred             eeeCcCchhhhcc---------------------CCcC----CCcEEEeCCeEeCCCcccHHHHHHHHHHHhcCHHHH
Q 019238          280 ATAFPAMCNKLSN---------------------QSEI----ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKA  332 (344)
Q Consensus       280 ~T~~~~~~~~~~~---------------------~~~~----~~~~v~dg~liT~~g~~~~~~~~~~li~~l~g~~~a  332 (344)
                      +|+||...+.+.+                     ..+.    +..+|+|||+|||+|+.++++|+++||+++.|++..
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~~  283 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG  283 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHCC
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchhh
Confidence            9999998877632                     2344    788999999999999999999999999999987643

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.97  E-value=8.4e-30  Score=224.29  Aligned_cols=169  Identities=24%  Similarity=0.292  Sum_probs=141.9

Q ss_pred             CCeEEEEeCC------------CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeec---------------------cc
Q 019238          160 SPQILVPIAN------------GSEEMEAVIIIDILRRAKANVVVASVADKLEILAS---------------------CQ  206 (344)
Q Consensus       160 ~~~v~ill~~------------g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~---------------------~g  206 (344)
                      |+||+|++.+            ||+..|+..++++|+++|++++++|++++.++...                     .+
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   88 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM   88 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence            6899999986            88999999999999999999999999886323111                     12


Q ss_pred             eeeee-ccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc------CCCCCCe
Q 019238          207 VKLVA-DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH------GLLKGKK  279 (344)
Q Consensus       207 ~~v~~-~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a------GlL~g~~  279 (344)
                      ..+.. +..++++++.+||+|+||||++....+..++.+.+||+++++++|+|++||+|+++ |+++      |||+||+
T Consensus        89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~-La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAM-LPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GGGCBCTTSSBTTTTCE
T ss_pred             HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHH-HHHhhcccCCccccCce
Confidence            23555 77888888889999999999865467889999999999999999999999999865 9998      9999999


Q ss_pred             eeeCcCchhh-------------------hcc--CCcCC------CcEEEeCCeEeCCCcccHHHHHHHHHHHhcCH
Q 019238          280 ATAFPAMCNK-------------------LSN--QSEIE------NRVVVDGNLVTSRGPGTSMEFALAIVEKFFGR  329 (344)
Q Consensus       280 ~T~~~~~~~~-------------------~~~--~~~~~------~~~v~dg~liT~~g~~~~~~~~~~li~~l~g~  329 (344)
                      +|+||...+.                   +++  +.+.+      ..+|+||||||++|+.++.+|+++||+.+.+.
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            9999987543                   222  33443      58999999999999999999999999998654

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.96  E-value=2.1e-29  Score=238.34  Aligned_cols=170  Identities=24%  Similarity=0.352  Sum_probs=151.5

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCc---------------eeeeccceeeeeccccccccCCCc
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL---------------EILASCQVKLVADMLIDEAAKLSY  223 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~---------------~v~~~~g~~v~~~~~~~~~~~~~~  223 (344)
                      +++||+|+++|||++.|+..+++.|+++|++++++|++++.               .+.++.|..+.++..+++.++.+|
T Consensus        11 ~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   90 (396)
T 3uk7_A           11 NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKY   90 (396)
T ss_dssp             CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGC
T ss_pred             cCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccC
Confidence            46899999999999999999999999999999999998641               245677999999999999877899


Q ss_pred             cEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcC----C
Q 019238          224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEI----E  297 (344)
Q Consensus       224 D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~----~  297 (344)
                      |+|+||||.+ ...+..++.+++||+++++++|+|+++|+|+. +|+++|||+||++|+||...+.|++  ..+.    .
T Consensus        91 D~livpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  168 (396)
T 3uk7_A           91 DGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICHGQL-ILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITP  168 (396)
T ss_dssp             SEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEETTTHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSST
T ss_pred             CEEEECCCcc-hhhcccCHHHHHHHHHHHHcCCEEEEECchHH-HHHhccccCCCEeecCcchHHHHHHCCCEEECCCCC
Confidence            9999999964 55577899999999999999999999999975 5999999999999999999998875  2232    2


Q ss_pred             CcEEEeCCeEeCCCcccHHHHHHHHHHHhcCHH
Q 019238          298 NRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRN  330 (344)
Q Consensus       298 ~~~v~dg~liT~~g~~~~~~~~~~li~~l~g~~  330 (344)
                      ..+|+|||+|||+|+.++++|+++||+++.|++
T Consensus       169 ~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~  201 (396)
T 3uk7_A          169 DVCVVDGSLITAATYEGHPEFIQLFVKALGGKI  201 (396)
T ss_dssp             TCEEEETTEEEESSGGGHHHHHHHHHHHTTCEE
T ss_pred             cceEecCCEEEecCcccHHHHHHHHHHHHhccc
Confidence            358999999999999999999999999999975

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.96  E-value=2.7e-29  Score=220.41  Aligned_cols=172  Identities=23%  Similarity=0.368  Sum_probs=140.4

Q ss_pred             CCCeEEEEeC-----CCcchhHHHHHHHHHHhcCCeEEEEEeCCCce--e---------eeccceeeeec-------ccc
Q 019238          159 NSPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKLE--I---------LASCQVKLVAD-------MLI  215 (344)
Q Consensus       159 ~~~~v~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~--v---------~~~~g~~v~~~-------~~~  215 (344)
                      .|+||+|+++     |||++.|+..++++|+++|++++++|++++ +  +         .++.|+.+.++       ..+
T Consensus         5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l   83 (232)
T 1vhq_A            5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPL   83 (232)
T ss_dssp             -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEG
T ss_pred             cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCCH
Confidence            4689999999     999999999999999999999999999886 4  3         66788888887       778


Q ss_pred             ccccCCCccEEEEcCCccchHhh----------hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCC-CCeeeeC-
Q 019238          216 DEAAKLSYDLIVLPGGLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK-GKKATAF-  283 (344)
Q Consensus       216 ~~~~~~~~D~liipGG~~~~~~l----------~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~-g~~~T~~-  283 (344)
                      +++++.+||+|+||||++....+          ..++.+++||+++++++|+|++||+|+++ |+++  |+ ||++|+| 
T Consensus        84 ~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~-La~a--L~~Gr~~Tth~  160 (232)
T 1vhq_A           84 AQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAM-LPKI--FDFPLRLTIGT  160 (232)
T ss_dssp             GGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGG-HHHH--CSSCCEECCCS
T ss_pred             HHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHH-HHHH--hcCCCEEeccC
Confidence            88766789999999997542212          24899999999999999999999999855 9988  79 9999999 


Q ss_pred             c-Cchhhhcc--CCcCC---CcEEE--eCCeEeCCCcccHHHHHHHHHHHhcCHHH-HHHHHHh
Q 019238          284 P-AMCNKLSN--QSEIE---NRVVV--DGNLVTSRGPGTSMEFALAIVEKFFGRNK-ALELAKI  338 (344)
Q Consensus       284 ~-~~~~~~~~--~~~~~---~~~v~--dg~liT~~g~~~~~~~~~~li~~l~g~~~-a~~~a~~  338 (344)
                      | ...+.|++  ..+.+   ..+++  |||+|||+    +++|+++||+++.|.+. ++++.++
T Consensus       161 ~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~~~~~~~~  220 (232)
T 1vhq_A          161 DIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKLVSRVLVL  220 (232)
T ss_dssp             CHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHHHHHHHHh
Confidence            5 66777876  33433   24444  49999997    78899999999999974 4444433

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.95  E-value=3.5e-28  Score=213.30  Aligned_cols=166  Identities=19%  Similarity=0.248  Sum_probs=132.6

Q ss_pred             CCCeEEEEeC-----CCcchhHHHHHHHHHHhcCCeEEEEEeCCCc----------eeeeccceeeeec-------cccc
Q 019238          159 NSPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLID  216 (344)
Q Consensus       159 ~~~~v~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~~-------~~~~  216 (344)
                      +++||+|++.     |||++.|+..++++|+++|++++++|++++.          ++.++.|+.+.++       ..++
T Consensus        22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~  101 (242)
T 3l3b_A           22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE  101 (242)
T ss_dssp             --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred             ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence            4589999998     9999999999999999999999999998752          4566778888887       6788


Q ss_pred             cccCCCccEEEEcCCccchHh-----------hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-CCCCCeeeeCc
Q 019238          217 EAAKLSYDLIVLPGGLGGAQA-----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFP  284 (344)
Q Consensus       217 ~~~~~~~D~liipGG~~~~~~-----------l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-lL~g~~~T~~~  284 (344)
                      ++++.+||+|+||||.+....           +..++.+++||+++++++|+|++||+|+++ |+++| ||+||++|+||
T Consensus       102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~-La~ag~lL~Gr~~T~~~  180 (242)
T 3l3b_A          102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAV-VVALLKDIAKVKVTIGE  180 (242)
T ss_dssp             GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHH-HHHHHTTTCCCEECCCC
T ss_pred             HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHH-HHHhCcccCCCEEEecC
Confidence            887789999999999754322           256799999999999999999999999855 99999 99999999999


Q ss_pred             Cchhhhcc--CCcCC---CcEEEe--CCeEeCCCcccHHHHHHHHHHHhcCH
Q 019238          285 AMCNKLSN--QSEIE---NRVVVD--GNLVTSRGPGTSMEFALAIVEKFFGR  329 (344)
Q Consensus       285 ~~~~~~~~--~~~~~---~~~v~d--g~liT~~g~~~~~~~~~~li~~l~g~  329 (344)
                      .....+++  +.+.+   +.+|+|  ||+||++++..    +..|.+...|.
T Consensus       181 ~~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~----~~~~~e~~~g~  228 (242)
T 3l3b_A          181 DSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR----NDSLYNVYLGI  228 (242)
T ss_dssp             ----CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS----CCCHHHHHHHH
T ss_pred             ChHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc----CCCHHHHHhCH
Confidence            88766664  44444   578889  99999998753    23444544444

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=99.95  E-value=1.6e-27  Score=202.86  Aligned_cols=138  Identities=35%  Similarity=0.572  Sum_probs=127.2

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|+..|+++|+++||+++++|++++.+|++++|+.+.+|..+++++.  +      ||.++...+..++.+++||+++++
T Consensus        19 ~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~   98 (190)
T 4e08_A           19 MEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQES   98 (190)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHH
Confidence            37789999999999999999999646899999999999999998752  2      775566677889999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~  127 (344)
                      ++++|++||+|+ ++|+++|||+||+                         |||+|||+|+++++||++++|+++.|++.
T Consensus        99 ~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~d~al~li~~~~g~~~  177 (190)
T 4e08_A           99 GGGLIAAICAAP-TVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEK  177 (190)
T ss_dssp             TTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHHHHHHHHHHHHHCHHH
T ss_pred             CCCEEEEECHHH-HHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHHHHHHHHHHHhcCHHH
Confidence            999999999999 5999999999998                         89999999999999999999999999999


Q ss_pred             HHHHhhcccccc
Q 019238          128 ADEVSGARVMRA  139 (344)
Q Consensus       128 a~~v~~~~~~~~  139 (344)
                      |+++++.|++++
T Consensus       178 a~~va~~l~~~~  189 (190)
T 4e08_A          178 VQEVAKGLLVAY  189 (190)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHhhCccc
Confidence            999999999876

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=99.94  E-value=4.2e-27  Score=203.02  Aligned_cols=142  Identities=16%  Similarity=0.148  Sum_probs=122.0

Q ss_pred             CeeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCch-hhhcccCChHHHHH
Q 019238            1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMP-GATNLKESEVLESI   66 (344)
Q Consensus         1 ~E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~-~~~~~~~~~~~~~~   66 (344)
                      +|+..|+|+|++++       |+|+++|+++ ++|++++|+++.+|..+++++++      ||.. ....+.+++.+++|
T Consensus        22 ~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~  100 (209)
T 3er6_A           22 ASIISSLEILETAAEFAEFQGFMTHVVTPNN-RPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDW  100 (209)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCEEEEEECTTS-SCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHHHHGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC-CceecCCCeEEeCCcCccccCCCCEEEECCCCCchhhhccCCHHHHHH
Confidence            36788999998764       9999999996 69999999999999999988654      6532 23334689999999


Q ss_pred             HHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHH
Q 019238           67 VKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVAL  118 (344)
Q Consensus        67 l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~l  118 (344)
                      |++++++|++|++||+|+ ++||++|||+||+                            |||+|||+|+++++||++++
T Consensus       101 l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~~a~~dlal~l  179 (209)
T 3er6_A          101 IRELHLKGSKIVAIDTGI-FVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVMLEI  179 (209)
T ss_dssp             HHHHHHTTCEEEEETTHH-HHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTEEEECCSSCCHHHHHHH
T ss_pred             HHHHHhcCCEEEEEcHHH-HHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCEEECCcHHHHHHHHHHH
Confidence            999999999999999999 6999999999998                            89999999999999999999


Q ss_pred             HHHHcChhHHHHHhhcccccccCCCc
Q 019238          119 VEQLYGKGKADEVSGARVMRANHGDE  144 (344)
Q Consensus       119 v~~~~g~~~a~~v~~~~~~~~~~~~~  144 (344)
                      |++++|++.|+++++.|+++++++-+
T Consensus       180 i~~~~G~~~A~~va~~l~~~~~~~~~  205 (209)
T 3er6_A          180 VEEYFGKHTRNLGNQFLSTIESEGHH  205 (209)
T ss_dssp             HHHHHCHHHHHHHHHHTTC-------
T ss_pred             HHHHhCHHHHHHHHHHhccCcccccc
Confidence            99999999999999999998876543

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=99.94  E-value=1.3e-26  Score=202.83  Aligned_cols=137  Identities=23%  Similarity=0.333  Sum_probs=126.9

Q ss_pred             CeeehhHHHHHh-CCCeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            1 MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         1 ~E~~~~~~~l~~-~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      +|+..|+++|++ ++|+|+++|+++ .+|++++|+.+.+|..+++++++      || .+...+..++.+++||++++++
T Consensus        19 ~e~~~p~evl~~~~~~~v~~vs~~~-~~V~~~~G~~v~~d~~l~~~~~~D~livpGG-~g~~~~~~~~~l~~~lr~~~~~   96 (231)
T 3noq_A           19 LDLTGPHDVLASLPDVQVHLIWKEP-GPVVASSGLVLQATTSFADCPPLDVICIPGG-TGVGALMEDPQALAFIRQQAAR   96 (231)
T ss_dssp             HHHHHHHHHHTTSTTEEEEEEESSS-EEEECTTSCEEEECEETTTCCCCSEEEECCS-TTHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCEEEEEECCC-CcEEcCCCCEEecccChhHCCcCCEEEECCC-CChhhhccCHHHHHHHHHHHhc
Confidence            377899999998 799999999996 59999999999999999988655      66 4566678899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhHH
Q 019238           74 GRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKA  128 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a  128 (344)
                      +++|++||+|+ ++|+++|||+||+                         |||+|||+|+++++||++++|++++|++.|
T Consensus        97 g~~v~aiC~G~-~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~~~A  175 (231)
T 3noq_A           97 ARYVTSVSTGS-LVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA  175 (231)
T ss_dssp             CSEEEEETTHH-HHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHHHHHHHHHHHHSCHHHH
T ss_pred             CCEEEEECHHH-HHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHHHHHHHHHHHHcCHHHH
Confidence            99999999999 6999999999998                         899999999999999999999999999999


Q ss_pred             HHHhhccccccc
Q 019238          129 DEVSGARVMRAN  140 (344)
Q Consensus       129 ~~v~~~~~~~~~  140 (344)
                      +++++.|+|+++
T Consensus       176 ~~va~~l~~~~~  187 (231)
T 3noq_A          176 QRVQLQLEYAPA  187 (231)
T ss_dssp             HHHHHHTTCCCC
T ss_pred             HHHHHhceeCCC
Confidence            999999999875

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=99.94  E-value=5.2e-27  Score=202.37  Aligned_cols=142  Identities=30%  Similarity=0.494  Sum_probs=127.9

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..|+++|+++||+++++|+++..+|++++|+.+.+|..+++++  ++      ||.++...+..++.+++||++++++
T Consensus        24 e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~  103 (208)
T 3ot1_A           24 ETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQ  103 (208)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHc
Confidence            778999999999999999999853599999999999999999884  33      7765667778899999999999999


Q ss_pred             CCEEEEEchhH-HHHHHHcCCCCCCC-----------------------C--CCEEcCCCCCcHHHHHHHHHHHHcChhH
Q 019238           74 GRLYAAICVFL-AVALGSWGLLKGLK-----------------------D--GKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (344)
Q Consensus        74 g~~i~aiC~g~-~~~La~aGll~g~~-----------------------d--g~~iT~~g~~~~~~~~~~lv~~~~g~~~  127 (344)
                      +++|++||+|+ + +|+++|||+||+                       |  ||+|||+|+++++||++++|+++.|++.
T Consensus       104 gk~i~aiC~G~a~-~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~~  182 (208)
T 3ot1_A          104 GKLVAAICATPAL-VFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVEL  182 (208)
T ss_dssp             TCEEEEETTHHHH-TTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHHH
T ss_pred             CCEEEEEChhHHH-HHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHHH
Confidence            99999999998 7 999999999998                       4  4999999999999999999999999999


Q ss_pred             HHHHhhcccccccCCCc
Q 019238          128 ADEVSGARVMRANHGDE  144 (344)
Q Consensus       128 a~~v~~~~~~~~~~~~~  144 (344)
                      |+++++.|+|++..+.+
T Consensus       183 a~~va~~l~~~~~~~~q  199 (208)
T 3ot1_A          183 AQHVAAPMVLHPQQLTE  199 (208)
T ss_dssp             HHHHHGGGTCCHHHHHH
T ss_pred             HHHHHHhheeCCCCCCc
Confidence            99999999996544333

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=99.94  E-value=1.8e-26  Score=204.09  Aligned_cols=139  Identities=20%  Similarity=0.279  Sum_probs=126.7

Q ss_pred             CeeehhHHHH-HhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc-C------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVL-RRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD-A------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l-~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~-~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|+..|+++| ++++|+|+++|+++ .+|++++|+.+.+|..+++++. +      ||.++...+..++.+++||+++++
T Consensus        37 ~e~~~p~dvl~~~~~~~v~~vs~~~-~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~  115 (253)
T 3ewn_A           37 MDLVGPHCMFGSLMGAKIYIVAKSL-DPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGTLAAASDAETLAFMADRGA  115 (253)
T ss_dssp             HHHHHHHHHHTTSTTCEEEEEESSS-SCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCCC-CeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccchhhhccCHHHHHHHHHHHH
Confidence            3778999999 67899999999996 5899999999999999988753 2      775356677889999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~  127 (344)
                      ++++|++||+|+ ++|+++|||+||+                         |||+|||+|+++++||+++||+++.|++.
T Consensus       116 ~gk~IaaICtG~-~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~~  194 (253)
T 3ewn_A          116 RAKYITSVCSGS-LILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTY  194 (253)
T ss_dssp             TCSEEEEETTHH-HHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHHHHHHHHHHHHSCHHH
T ss_pred             cCCEEEEEChHH-HHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHHHHHHHHHHHHcCHHH
Confidence            999999999999 6999999999998                         89999999999999999999999999999


Q ss_pred             HHHHhhcccccccC
Q 019238          128 ADEVSGARVMRANH  141 (344)
Q Consensus       128 a~~v~~~~~~~~~~  141 (344)
                      |+++++.|+|++++
T Consensus       195 A~~va~~l~~~~~~  208 (253)
T 3ewn_A          195 AECAQLMSEYDPDP  208 (253)
T ss_dssp             HHHHHHHTTCCCCC
T ss_pred             HHHHHHhcccCCCC
Confidence            99999999998744

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=99.94  E-value=1.7e-26  Score=197.57  Aligned_cols=137  Identities=39%  Similarity=0.536  Sum_probs=124.6

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccc---ccC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNC---RDA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~---~~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      |+..|+++|+++||+++++|++++.++++++|+.+.+|..++++   .++      ||.++...+..++.+++||+++++
T Consensus        18 e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~   97 (197)
T 2rk3_A           18 ETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEN   97 (197)
T ss_dssp             HHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHH
Confidence            67899999999999999999997568999999999999999887   333      775456667789999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChh
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~  126 (344)
                      ++++|++||+|+ ++|+++|||+||+                          |||+|||+|+++++||++++|+++.|++
T Consensus        98 ~gk~i~aiC~G~-~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~~  176 (197)
T 2rk3_A           98 RKGLIATICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKE  176 (197)
T ss_dssp             TTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHHHHHHHHHHHHHCHH
T ss_pred             cCCEEEEECHHH-HHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHHHHHHHHHHHHhcCHH
Confidence            999999999999 5999999999988                          8999999999999999999999999999


Q ss_pred             HHHHHhhcccccc
Q 019238          127 KADEVSGARVMRA  139 (344)
Q Consensus       127 ~a~~v~~~~~~~~  139 (344)
                      .|+++++.|++++
T Consensus       177 ~a~~va~~~~~~~  189 (197)
T 2rk3_A          177 VAAQVKAPLVLKD  189 (197)
T ss_dssp             HHHHHHGGGTC--
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999999876

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=99.94  E-value=9.6e-27  Score=200.97  Aligned_cols=138  Identities=17%  Similarity=0.291  Sum_probs=126.1

Q ss_pred             CeeehhHHHHHhC--CCeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRS--GADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~--~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|+..|+++|+++  +|+|+++|+++ .+|++++|+.+.+|..+++++.+      || .+...+..++.+++||+++++
T Consensus        18 ~e~~~~~~~l~~a~~~~~v~~vs~~~-~~V~~~~G~~v~~d~~~~~~~~~D~livpGG-~~~~~~~~~~~~~~~l~~~~~   95 (211)
T 3mgk_A           18 LDVFGPVEIFGNLQDDFELNFISSDG-GLVESSQKVRVETSLYTRDENIEKILFVPGG-SGTREKVNDDNFINFIGNMVK   95 (211)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEEECSSC-EEEECTTCCEEEEBCCCCCSSSEEEEEECCS-THHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCceEEEEEECCC-CeEecCCCcEEEeccchhhCCCCCEEEECCC-cchhhhcCCHHHHHHHHHHHH
Confidence            3778999999988  59999999996 59999999999999999887643      66 455667789999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                      ++++|++||+|+ ++|+++|||+||+                            |||+|||+|+++++||++++|+++.|
T Consensus        96 ~~k~iaaiC~G~-~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G  174 (211)
T 3mgk_A           96 ESKYIISVCTGS-ALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIG  174 (211)
T ss_dssp             HCSEEEECTTHH-HHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECSHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEchHH-HHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCCHHHHHHHHHHHHHHHhC
Confidence            999999999999 5999999999998                            89999999999999999999999999


Q ss_pred             hhHHHHHhhcccccccC
Q 019238          125 KGKADEVSGARVMRANH  141 (344)
Q Consensus       125 ~~~a~~v~~~~~~~~~~  141 (344)
                      ++.|+++++.|+|++++
T Consensus       175 ~~~A~~va~~l~~~~~r  191 (211)
T 3mgk_A          175 KEKALEISRSIEYFWNE  191 (211)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHhcEECCcC
Confidence            99999999999998643

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=99.93  E-value=5.5e-26  Score=190.16  Aligned_cols=121  Identities=21%  Similarity=0.221  Sum_probs=111.9

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|++.|+++|+++|++++++|+++ +++++++|+++.+|..+++++.  +      || .+...+++|+.+++||+++++
T Consensus        22 ~E~~~p~~~l~~ag~~V~~~s~~~-~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG-~g~~~l~~~~~~~~~l~~~~~   99 (177)
T 4hcj_A           22 EEYFESKKIFESAGYKTKVSSTFI-GTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGG-IGCITLWDDWRTQGLAKLFLD   99 (177)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSS-EEEEETTSCEEEECEEGGGCCGGGCSEEEECCS-GGGGGGTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCC-CeEeeCCCCEEecCccHHHCCHhHCCEEEECCC-ccHHHHhhCHHHHHHHHHHHH
Confidence            388999999999999999999996 6999999999999999998752  3      77 466788999999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                      ++|+|++||+|+ ++|+++|||+||+                         |||+|||+||++++||++++++.+.+
T Consensus       100 ~~k~iaaIC~g~-~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          100 NQKIVAGIGSGV-VIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             TTCEEEEETTHH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             hCCEEEEecccH-HHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence            999999999999 5999999999998                         89999999999999999999999864

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=99.93  E-value=5.6e-26  Score=193.58  Aligned_cols=136  Identities=21%  Similarity=0.270  Sum_probs=122.7

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecC--CcceecCCCCEEEcCcccccccc-------C------CCchhhhcccCChHHHH
Q 019238            1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCRD-------A------CGMPGATNLKESEVLES   65 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~--~~~v~~~~g~~~~~d~~~~~~~~-------~------gG~~~~~~~~~~~~~~~   65 (344)
                      +|++.|+++|+++|++++++++.+  +.++++++|+++.+|..+++++.       +      ||+++++.+++++.+++
T Consensus        18 ~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~~~~l~~~~~l~~   97 (194)
T 4gdh_A           18 IEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQ   97 (194)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchhHhHhhhCHHHHH
Confidence            488999999999999999999864  24689999999999999988742       2      88778889999999999


Q ss_pred             HHHHHhhC-CCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHH
Q 019238           66 IVKKQASD-GRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALV  119 (344)
Q Consensus        66 ~l~~~~~~-g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv  119 (344)
                      ||++++++ ++++++||+|+  +|+++|+|+||+                         |||+|||+|+++++||++++|
T Consensus        98 ~l~~~~~~~~k~iaaiC~g~--~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiTs~g~~~~~d~al~lv  175 (194)
T 4gdh_A           98 VVKEFYKKPNKWIGMICAGT--LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLL  175 (194)
T ss_dssp             HHHHHTTCTTCEEEEEGGGG--HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEEECSGGGHHHHHHHHH
T ss_pred             HHHHhhhcCCceEEeecccc--cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEECCCHhHHHHHHHHHH
Confidence            99999865 79999999999  377888899998                         999999999999999999999


Q ss_pred             HHHcChhHHHHHhhccccc
Q 019238          120 EQLYGKGKADEVSGARVMR  138 (344)
Q Consensus       120 ~~~~g~~~a~~v~~~~~~~  138 (344)
                      |++.|++.|+++++.|+|+
T Consensus       176 e~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          176 EQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             HHHSCHHHHHHHHHHTTCC
T ss_pred             HHHcCHHHHHHHHhhccCC
Confidence            9999999999999999874

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=99.93  E-value=2.3e-26  Score=197.26  Aligned_cols=138  Identities=22%  Similarity=0.296  Sum_probs=117.0

Q ss_pred             CeeehhHHHHHhCC------CeEEEEEecCCcceecCCCCEEEcCcccccc--ccC------CCchhhhcccCChHHHHH
Q 019238            1 MEAVITIDVLRRSG------ADVVVASVEKQLRVDACHGVKIVADALVSNC--RDA------CGMPGATNLKESEVLESI   66 (344)
Q Consensus         1 ~E~~~~~~~l~~~~------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~--~~~------gG~~~~~~~~~~~~~~~~   66 (344)
                      +|+..|+++|++++      |+|+++|+++ ++|++++|+++.+| .++++  +++      ||.... .. . +.+++|
T Consensus        19 ~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~-~~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~~~~-~~-~-~~l~~~   93 (202)
T 3gra_A           19 ASFTVAMDVLVTANLLRADSFQFTPLSLDG-DRVLSDLGLELVAT-ELSAAALKELDLLVVCGGLRTP-LK-Y-PELDRL   93 (202)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSEEEEEEESSS-SEEEBTTSCEEECE-ECCSGGGTTCSEEEEECCTTCC-SC-C-TTHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CceEcCCCCEEECC-CcccccCCCCCEEEEeCCCchh-hc-c-HHHHHH
Confidence            36788999998876      9999999996 59999999999999 99885  333      764333 22 3 899999


Q ss_pred             HHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC---------------------------CCCEEcCCCCCcHHHHHHHHH
Q 019238           67 VKKQASDGRLYAAICVFLAVALGSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALV  119 (344)
Q Consensus        67 l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~---------------------------dg~~iT~~g~~~~~~~~~~lv  119 (344)
                      |++++++|++|++||+|+ ++|+++|||+||+                           |||+|||+|+++++||++++|
T Consensus        94 l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs~G~~a~~dlal~li  172 (202)
T 3gra_A           94 LNDCAAHGMALGGLWNGA-WFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSAASPNGAMELMLGLV  172 (202)
T ss_dssp             HHHHHHHTCEEEEETTHH-HHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEECHHH-HHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEECCCHHHHHHHHHHHH
Confidence            999999999999999999 6999999999998                           899999999999999999999


Q ss_pred             HHHcChhHHHHHhhcccccccCCCc
Q 019238          120 EQLYGKGKADEVSGARVMRANHGDE  144 (344)
Q Consensus       120 ~~~~g~~~a~~v~~~~~~~~~~~~~  144 (344)
                      ++++|++.|+++++.|++++.+..+
T Consensus       173 ~~~~G~~~A~~va~~l~~~~~~~~~  197 (202)
T 3gra_A          173 RRLYGDGLAEGVEEILSFSGAREGH  197 (202)
T ss_dssp             HHHHCHHHHHHHHHHHC--------
T ss_pred             HHHhCHHHHHHHHHHhCcCcccccc
Confidence            9999999999999999998765443

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=99.93  E-value=1.2e-25  Score=193.34  Aligned_cols=139  Identities=36%  Similarity=0.533  Sum_probs=127.0

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCc--ceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQL--RVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~--~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      |+..|+++|+++||+++++|++++.  +|++++|+.+.+|..+++++  ++      ||..+...+..++.+++||++++
T Consensus        17 e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~   96 (205)
T 2ab0_A           17 EAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFH   96 (205)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhccCHHHHHHHHHHH
Confidence            6789999999999999999999643  89999999999999998873  23      77556666778999999999999


Q ss_pred             hCCCEEEEEchhH-HHHHHHcCCCCCCC-----------------------CCCE--EcCCCCCcHHHHHHHHHHHHcCh
Q 019238           72 SDGRLYAAICVFL-AVALGSWGLLKGLK-----------------------DGKV--VTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        72 ~~g~~i~aiC~g~-~~~La~aGll~g~~-----------------------dg~~--iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                      ++|++|++||+|+ + +|+++|||+||+                       |||+  |||+|+++++||++++++++.|+
T Consensus        97 ~~gk~i~aiC~G~~~-lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~  175 (205)
T 2ab0_A           97 RSGRIVAAICAAPAT-VLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGR  175 (205)
T ss_dssp             HTTCEEEEETHHHHH-HTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHHHHHHHHHHHHTCH
T ss_pred             HcCCEEEEECHhHHH-HHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhHHHHHHHHHHHhcCh
Confidence            9999999999999 8 999999999998                       8999  99999999999999999999999


Q ss_pred             hHHHHHhhcccccccC
Q 019238          126 GKADEVSGARVMRANH  141 (344)
Q Consensus       126 ~~a~~v~~~~~~~~~~  141 (344)
                      +.|+++++.|++++.+
T Consensus       176 ~~a~~va~~l~~~~~r  191 (205)
T 2ab0_A          176 EKAHEVASQLVMAAGI  191 (205)
T ss_dssp             HHHHHHHTTTTCCTTS
T ss_pred             HHHHHHHHhcccCCCC
Confidence            9999999999998754

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=99.91  E-value=2.7e-24  Score=185.87  Aligned_cols=137  Identities=21%  Similarity=0.271  Sum_probs=122.2

Q ss_pred             CeeehhHHHHH--------hCCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHH
Q 019238            1 MEAVITIDVLR--------RSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLE   64 (344)
Q Consensus         1 ~E~~~~~~~l~--------~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~   64 (344)
                      +|+..|+++|+        +++|+|+++|+++ .+|++++|+.+.+|..+++++  ++      ||. +. .+..++.++
T Consensus        19 ~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~-~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~-~~-~~~~~~~l~   95 (212)
T 3efe_A           19 WEYGYLIAELNSGRYFKKDLAPLKVITVGANK-EMITTMGGLRIKPDISLDECTLESKDLLILPGGT-TW-SEEIHQPIL   95 (212)
T ss_dssp             TTTHHHHHHHHHCTTSCTTCCCCCEEEEESSS-CCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS-CT-TSGGGHHHH
T ss_pred             HHHHHHHHHHHhhhccccCCCCeEEEEEECCC-CeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC-cc-ccccCHHHH
Confidence            47889999999        7899999999996 599999999999999999886  33      664 22 356889999


Q ss_pred             HHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCEEcCCCCCcHHHHH
Q 019238           65 SIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFV  115 (344)
Q Consensus        65 ~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~~  115 (344)
                      +||+++++++++|++||+|+ ++|+++|||+||+                             |||+|||+|++ ++||+
T Consensus        96 ~~l~~~~~~gk~iaaiC~G~-~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~iiTs~G~~-~~d~a  173 (212)
T 3efe_A           96 ERIGQALKIGTIVAAICGAT-DALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFA  173 (212)
T ss_dssp             HHHHHHHHHTCEEEEETHHH-HHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTEEEECTTC-HHHHH
T ss_pred             HHHHHHHHCCCEEEEEcHHH-HHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCEEECCCch-HHHHH
Confidence            99999999999999999999 5999999999998                             99999999996 99999


Q ss_pred             HHHHHHHcChhHHHHHhhcccccccCCC
Q 019238          116 VALVEQLYGKGKADEVSGARVMRANHGD  143 (344)
Q Consensus       116 ~~lv~~~~g~~~a~~v~~~~~~~~~~~~  143 (344)
                      +++|+++.|+ .++++++.+.|.+..++
T Consensus       174 l~li~~l~g~-~a~~va~~~~~~~~g~~  200 (212)
T 3efe_A          174 MEVLKKIDVF-TLDALHSWYNLNKTHKP  200 (212)
T ss_dssp             HHHHHHHTCS-CHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHcCCCH
Confidence            9999999997 89999999999764433

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.91  E-value=2.9e-24  Score=187.96  Aligned_cols=136  Identities=24%  Similarity=0.330  Sum_probs=120.7

Q ss_pred             CeeehhHHHHHhCC--CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSG--ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~--~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|+..|+++|++++  |+++++| ++ .+|++++|+.+.+|..+++.+++      ||..+...+..++.+++||  +++
T Consensus        34 ~e~~~p~dvl~~~~~~~~v~~vs-~~-~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~  109 (236)
T 3bhn_A           34 VDFFLMNDLLGRTSDSWTVRILG-TK-PEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGIPAALQDENFMSAL--KLD  109 (236)
T ss_dssp             HHHHHHHHHHTTCSSSEEEEEEE-SS-SEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHHHHHHTCHHHHHHC--CCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEE-CC-CcEEecCCcEEecCcccccccCCCEEEEcCCccCHhhhccCHHHHHHH--HhC
Confidence            37889999998876  8999999 75 59999999999999999886544      6634555677899999999  666


Q ss_pred             CCC-EEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChh
Q 019238           73 DGR-LYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (344)
Q Consensus        73 ~g~-~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~  126 (344)
                      +++ +|++||+|+ ++|+++|||+||+                         |||+|||+|+++++||++++|+++.|++
T Consensus       110 ~~~~~IaaIC~G~-~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~  188 (236)
T 3bhn_A          110 PSRQLIGSICAGS-FVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSV  188 (236)
T ss_dssp             TTTCEEEEETTHH-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHHHHHHHHHHSCHH
T ss_pred             CCCCEEEEEcHHH-HHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHHHHHHHHHHHHHHhcCHH
Confidence            666 999999999 5999999999998                         8999999999999999999999999999


Q ss_pred             HHHHHhhcccccccC
Q 019238          127 KADEVSGARVMRANH  141 (344)
Q Consensus       127 ~a~~v~~~~~~~~~~  141 (344)
                      .|+++++.|+|++..
T Consensus       189 ~A~~va~~l~~~~~~  203 (236)
T 3bhn_A          189 KRKQIQNQLIPAGQM  203 (236)
T ss_dssp             HHHHHHTTTSCTTCH
T ss_pred             HHHHHHHhcccCCCC
Confidence            999999999998754

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.90  E-value=1e-23  Score=181.09  Aligned_cols=133  Identities=23%  Similarity=0.278  Sum_probs=118.5

Q ss_pred             CeeehhHHHHHhC-CCeEEEEEecCCcceecCCCCEEEcCccccccc-cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCR-DA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~-~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~-~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|++.|+++|+++ +|+++++|+++ . |++++|+.+.+|..+++++ ++      ||. +...  .++.+++||+++++
T Consensus        17 ~E~~~~~~~l~~~~~~~v~~vs~~~-~-V~~~~G~~v~~d~~l~~~~~~~D~livpGG~-~~~~--~~~~l~~~l~~~~~   91 (206)
T 3f5d_A           17 WEGVYLASALNQREDWSVHTVSLDP-I-VSSIGGFKTSVDYIIGLEPANFNLLVMIGGD-SWSN--DNKKLLHFVKTAFQ   91 (206)
T ss_dssp             TTSHHHHHHHHTSTTEEEEEEESSS-E-EEBTTSCEEECSEETTSSCSCCSEEEECCBS-CCCC--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeEEEEEECCC-C-EEecCCcEEecCcChhhCCcCCCEEEEcCCC-Chhh--cCHHHHHHHHHHHH
Confidence            5889999999988 99999999996 5 9999999999999998875 23      664 4433  89999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                      ++++|++||+|+ ++|+++|||+||+                            |||+|||+|++ ++||++++|+++. 
T Consensus        92 ~gk~iaaiC~G~-~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a-~id~al~li~~l~-  168 (206)
T 3f5d_A           92 KNIPIAAICGAV-DFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMID-  168 (206)
T ss_dssp             TTCCEEEETHHH-HHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC-HHHHHHHHHHHTT-
T ss_pred             cCCEEEEECHHH-HHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch-HHHHHHHHHHHhC-
Confidence            999999999999 5999999999988                            89999999996 9999999999765 


Q ss_pred             hhHHHHHhhcccccccC
Q 019238          125 KGKADEVSGARVMRANH  141 (344)
Q Consensus       125 ~~~a~~v~~~~~~~~~~  141 (344)
                      .+.|+++++.|++.+..
T Consensus       169 ~~~a~~va~~~~~~~~g  185 (206)
T 3f5d_A          169 FDTPENIEKMMYMNRYG  185 (206)
T ss_dssp             CSCHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHhhhhhcc
Confidence            68999999999987643

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=99.89  E-value=2.5e-23  Score=176.89  Aligned_cols=126  Identities=26%  Similarity=0.308  Sum_probs=111.9

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceec-----CCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHH
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDA-----CHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVK   68 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~-----~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~   68 (344)
                      |+..|+++|++++|+++++|+++ .++++     ++|+.+.+|..+++++  ++      ||......+..++.+++||+
T Consensus        24 e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~l~  102 (190)
T 2vrn_A           24 ELTSPRAAIEAAGGTTELISLEP-GEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVR  102 (190)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSS-SEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEecCC-CccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHHHHhhCHHHHHHHH
Confidence            67899999999999999999996 47877     7899999999998873  33      77556666788999999999


Q ss_pred             HHhhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHH-
Q 019238           69 KQASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQL-  122 (344)
Q Consensus        69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~-  122 (344)
                      ++++++++|++||+|+ ++|+++|||+||+                         |||+|||+|+.+++||++++|+++ 
T Consensus       103 ~~~~~gk~i~aiC~G~-~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g~~s~~~~~l~li~~l~  181 (190)
T 2vrn_A          103 DMYDAGKPIAAICHGP-WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFA  181 (190)
T ss_dssp             HHHHTTCCEEEC-CTT-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEECHhH-HHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCChhhHHHHHHHHHHHHh
Confidence            9999999999999999 5999999999998                         899999999999999999999999 


Q ss_pred             cChhHHH
Q 019238          123 YGKGKAD  129 (344)
Q Consensus       123 ~g~~~a~  129 (344)
                      .|++.|+
T Consensus       182 ~g~~~a~  188 (190)
T 2vrn_A          182 EGDHSSR  188 (190)
T ss_dssp             HCCCGGG
T ss_pred             ccccccc
Confidence            8876553

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.88  E-value=2.4e-23  Score=192.09  Aligned_cols=133  Identities=25%  Similarity=0.371  Sum_probs=119.6

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCC-EEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGV-KIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~-~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      +|+..|+++|+++||+|+++|++++..|++++|+ .+.+|..+++++  ++      ||. +...+..++.+.+||++++
T Consensus        24 ~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~~~l~~~~~l~~~Lr~~~  102 (365)
T 3fse_A           24 TEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-APDKMRRNPNTVRFVQEAM  102 (365)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-chhhccCCHHHHHHHHHHH
Confidence            3778999999999999999999975339999999 999999999875  23      664 5566788999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChh
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~  126 (344)
                      ++|++|++||+|+ ++|+++|||+||+                         |||+|||+|+++++||++++|+++.|+.
T Consensus       103 ~~gk~IaAIC~G~-~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a~~d~al~lIe~L~g~~  181 (365)
T 3fse_A          103 EQGKLVAAVCHGP-QVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGG  181 (365)
T ss_dssp             HTTCEEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHHHHTTCCC
T ss_pred             HCCCEEEEECHHH-HHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHHHHHHHHHHHHHhcCch
Confidence            9999999999999 6999999999998                         9999999999999999999999999998


Q ss_pred             HHHHHhhcc
Q 019238          127 KADEVSGAR  135 (344)
Q Consensus       127 ~a~~v~~~~  135 (344)
                      .+.++++.+
T Consensus       182 ~A~~lA~~~  190 (365)
T 3fse_A          182 KDAALPDEK  190 (365)
T ss_dssp             SSSCCCCTT
T ss_pred             HHHHHhhhh
Confidence            887777665

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=99.88  E-value=6.1e-23  Score=170.96  Aligned_cols=118  Identities=25%  Similarity=0.347  Sum_probs=108.1

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..|+++|+++||+++++|+++ .++++++|+.+.+|..+++++.  +      ||. +...+..++.+++||++++++
T Consensus        17 e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~~~~~l~~~l~~~~~~   94 (168)
T 3l18_A           17 ELIYPLHRIKEEGHEVYVASFQR-GKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVRLNEKAVMITRRMFED   94 (168)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSS-EEEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEEECCC-CEEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhccCHHHHHHHHHHHHC
Confidence            67899999999999999999996 6999999999999999998852  3      664 556677899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           74 GRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++|++||+|+ ++|+++|||+||+                         |||+|||+|+.+++||++++|+++
T Consensus        95 ~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d~~l~li~~l  167 (168)
T 3l18_A           95 DKPVASICHGP-QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL  167 (168)
T ss_dssp             TCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHGGGC
T ss_pred             CCEEEEECHhH-HHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHHHHHHHHHhh
Confidence            99999999999 5999999999998                         999999999999999999999875

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.88  E-value=2.6e-22  Score=170.23  Aligned_cols=131  Identities=27%  Similarity=0.386  Sum_probs=115.2

Q ss_pred             CeeehhHHHHHh-CCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            1 MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         1 ~E~~~~~~~l~~-~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      +|+..|+++|++ ++|+++++|+++ .+|++++|+.+.+|..+++++  ++      ||.. .. +..++.+++||++++
T Consensus        15 ~e~~~~~~~l~~a~~~~v~~vs~~~-~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~~-~~~~~~l~~~l~~~~   91 (188)
T 2fex_A           15 WEPALLAAAARSYLGVEIVHATPDG-MPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-WE-KGTAADLGGLVKRFR   91 (188)
T ss_dssp             TSSHHHHHHHHHHSCCEEEEEETTS-SCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-HH-HTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEEeCCC-CceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-cc-ccccHHHHHHHHHHH
Confidence            478899999999 999999999996 599999999999999998876  33      6642 22 457899999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++++|++||+|+ ++|+++|||+||+                             |||+|||+|++ ++||++++|+++
T Consensus        92 ~~~k~i~aiC~G~-~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~-~~d~al~lv~~l  169 (188)
T 2fex_A           92 DRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSL  169 (188)
T ss_dssp             HTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTTC-HHHHHHHHHHHT
T ss_pred             HCCCEEEEECHHH-HHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCcc-HHHHHHHHHHHc
Confidence            9999999999999 5999999999988                             78999999996 899999999999


Q ss_pred             cChhHHHHHhhccccc
Q 019238          123 YGKGKADEVSGARVMR  138 (344)
Q Consensus       123 ~g~~~a~~v~~~~~~~  138 (344)
                      .|.+.++  ++.+.|.
T Consensus       170 ~~~~~~~--~~~~~~~  183 (188)
T 2fex_A          170 GLFGPEA--EAELQIF  183 (188)
T ss_dssp             TCCSHHH--HHHHGGG
T ss_pred             cCCCHHH--HHHHHHH
Confidence            9998776  6666554

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.88  E-value=6.1e-22  Score=196.10  Aligned_cols=158  Identities=14%  Similarity=0.141  Sum_probs=135.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ++||+||++|||++.|+..++++|+.+|++++++|++++ +|.++.|..+.++..++++++.+||+|+||||......+.
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~  612 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS  612 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhc
Confidence            479999999999999999999999999999999999997 8999999999999999988777899999999964566678


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-CCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCCcc-----
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPG-----  313 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-GlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g~~-----  313 (344)
                      .++.+++||+++++++|+|++||+|+. +|+++ ||.+-+.+.               ...+|+||++||++|+.     
T Consensus       613 ~~~~l~~~Lr~~~~~gK~IaAIC~G~~-lLA~AlGL~~L~~aG---------------a~~VVvDg~lITs~gp~~~~l~  676 (715)
T 1sy7_A          613 KNGRALHWIREAFGHLKAIGATGEAVD-LVAKAIALPQVTVSS---------------EAEVHESYGVVTLKKVKPESFT  676 (715)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHHHCCTTSCCCC---------------SSSCEEETTEEEESSCCTTTTT
T ss_pred             cCHHHHHHHHHHHhCCCEEEEECHHHH-HHHHccCcHhHHhcC---------------CCcEEEeCCEEECCCCcccccc
Confidence            899999999999999999999999975 59999 984322211               25799999999999986     


Q ss_pred             -------cHHHHHHHHHHHhcCHHHHHH
Q 019238          314 -------TSMEFALAIVEKFFGRNKALE  334 (344)
Q Consensus       314 -------~~~~~~~~li~~l~g~~~a~~  334 (344)
                             ++.+|+.++++.+......++
T Consensus       677 ~~~~i~~s~~~fa~~fi~~L~~hR~W~R  704 (715)
T 1sy7_A          677 DAVKIAKGAAGFLGEFFYAIAQHRNWDR  704 (715)
T ss_dssp             SCCCCSTTCSSHHHHHHHHHHTCSCHHH
T ss_pred             cccccccCHHHHHHHHHHHHHcCCcccc
Confidence                   667788888888865444333

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.86  E-value=1.1e-21  Score=166.97  Aligned_cols=119  Identities=21%  Similarity=0.285  Sum_probs=107.8

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcc-eecCCCC-EEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLR-VDACHGV-KIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~-v~~~~g~-~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      |+..|+++|+++||+++++|++++ + |++++|+ .+.+|..+++++  ++      || .+...+..++.+.+||++++
T Consensus        38 e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG-~~~~~l~~~~~l~~~l~~~~  115 (193)
T 1oi4_A           38 EFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG-HSPDYLRGDNRFVTFTRDFV  115 (193)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB-THHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCC-cCHHHhhhCHHHHHHHHHHH
Confidence            677899999999999999999964 6 9999999 999999998873  22      66 45666778999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCC-EEcCCCCCcHHHHHHHHHHHHc
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGK-VVTTRGPGTPMEFVVALVEQLY  123 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~-~iT~~g~~~~~~~~~~lv~~~~  123 (344)
                      +++++|++||+|+ ++|+++|||+||+                         ||| +|||+|+++++||++++|+++.
T Consensus       116 ~~gk~i~aIC~G~-~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          116 NSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             HTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             HcCCEEEEECHHH-HHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence            9999999999999 5999999999998                         899 9999999999999999999874

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.85  E-value=2.3e-21  Score=162.47  Aligned_cols=117  Identities=20%  Similarity=0.351  Sum_probs=102.8

Q ss_pred             hhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccc----ccC------CC--chhhhccc---CChHHHHHHHH
Q 019238            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNC----RDA------CG--MPGATNLK---ESEVLESIVKK   69 (344)
Q Consensus         5 ~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~----~~~------gG--~~~~~~~~---~~~~~~~~l~~   69 (344)
                      ...+.+.+++|+++++|+++++++++++|+.+.+|..++++    +++      ||  .++...+.   .++.+++||++
T Consensus        20 ~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~   99 (175)
T 3cne_A           20 QYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKT   99 (175)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHH
T ss_pred             hhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHH
Confidence            44555568899999999995469999999999999999887    333      77  54565566   78999999999


Q ss_pred             HhhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           70 QASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        70 ~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++++++|++||+|+ ++|+++|||+||+                       |||+|||+|+++++||++++|+++
T Consensus       100 ~~~~gk~i~aiC~G~-~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          100 FGEKGKMMIGHCAGA-MMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             HHHTTCEEEEETTHH-HHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTEEEESSGGGGGGTHHHHHHHH
T ss_pred             HHHCCCEEEEECHHH-HHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCEEeCCChHHHHHHHHHHHHHh
Confidence            999999999999999 5999999999998                       899999999999999999999986

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.82  E-value=6.1e-21  Score=167.67  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=104.7

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCccee---------------------cCCCCEEEcCcccccccc--C------CCch
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVD---------------------ACHGVKIVADALVSNCRD--A------CGMP   52 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~---------------------~~~g~~~~~d~~~~~~~~--~------gG~~   52 (344)
                      |++.|+++|+++|++++++|++|+.++.                     ++.+..+.+|..+++++.  +      ||++
T Consensus        30 E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~  109 (244)
T 3kkl_A           30 EILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHG  109 (244)
T ss_dssp             HHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTT
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCc
Confidence            8899999999999999999999753331                     123456777888888752  2      8876


Q ss_pred             hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc-------CCCCCCC---------------------------
Q 019238           53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK---------------------------   98 (344)
Q Consensus        53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~---------------------------   98 (344)
                      ....+..++.+.+||++++++|++|++||+|+ ++|+++       |||+||+                           
T Consensus       110 ~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~-~~La~a~~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~  188 (244)
T 3kkl_A          110 ALFDYPKAKNLQDIASKIYANGGVIAAICHGP-LLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVE  188 (244)
T ss_dssp             HHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTCEECCSCHHHHHHHTTHHHHHHTTCCCHH
T ss_pred             hhhhcccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhhccccCCceeCCceecCCCcHHHHhhhhhhhccccccccHH
Confidence            66778899999999999999999999999999 599999       9999976                           


Q ss_pred             -----------------------CCCEEcCCCCCcHHHHHHHHHHHHcCh
Q 019238           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                                             |||+|||+||.++++|++++|+++.+-
T Consensus       189 ~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~  238 (244)
T 3kkl_A          189 RVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSV  238 (244)
T ss_dssp             HHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC-
T ss_pred             HHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhh
Confidence                                   689999999999999999999999864

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.81  E-value=1.2e-20  Score=164.53  Aligned_cols=122  Identities=25%  Similarity=0.304  Sum_probs=106.3

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCC--------C-----CEEEcCccccccc--cC------CCchhhhcccCC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACH--------G-----VKIVADALVSNCR--DA------CGMPGATNLKES   60 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~--------g-----~~~~~d~~~~~~~--~~------gG~~~~~~~~~~   60 (344)
                      |+..|+++|+++||+++++|+++ .++.+..        |     ..+.++..+++++  ++      ||......+..+
T Consensus        30 e~~~p~~~l~~ag~~v~~vs~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~  108 (224)
T 1u9c_A           30 EFAVPYLVFQEKGYDVKVASIQG-GEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDN  108 (224)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSC-BCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTC
T ss_pred             HHHHHHHHHHHCCCeEEEECCCC-CccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcC
Confidence            78899999999999999999996 4665442        3     6788888888874  23      776555568889


Q ss_pred             hHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC------CCCCCC------------------------------------
Q 019238           61 EVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK------------------------------------   98 (344)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~------------------------------------   98 (344)
                      +.+++||+++++++++|++||+|+ ++|+++|      ||+||+                                    
T Consensus       109 ~~l~~~l~~~~~~~k~iaaiC~G~-~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~  187 (224)
T 1u9c_A          109 ETLQYVLQQFAEDGRIIAAVCHGP-SGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRG  187 (224)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCC
T ss_pred             HHHHHHHHHHHHCCCEEEEEChHH-HHHHHccccCCCceecCcEEecCCCHHHhhccccccCCccHHHHHHHcCCEEecC
Confidence            999999999999999999999999 5999999      999976                                    


Q ss_pred             ---------CCCEEcCCCCCcHHHHHHHHHHHHcCh
Q 019238           99 ---------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        99 ---------dg~~iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                               |||+|||+|+++++||++++|+++.|+
T Consensus       188 ~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          188 GKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             STTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence                     689999999999999999999999886

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.79  E-value=7.2e-19  Score=172.46  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=106.6

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      +.+||+||+.|||++.|+..+++.|+++|++++++|++++ +|.++.|..+.+|.+++++.+.+||+|+||||  +...+
T Consensus       599 ~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~L  675 (753)
T 3ttv_A          599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADI  675 (753)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGT
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHh
Confidence            4689999999999999999999999999999999999997 89999999999999999998888999999999  46778


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCC
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  275 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL  275 (344)
                      ..++.+++||+++++++|+|++||+|+++ |+++||-
T Consensus       676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~l-La~AGL~  711 (753)
T 3ttv_A          676 ADNGDANYYLMEAYKHLKPIALAGDARKF-KATIKIA  711 (753)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEEGGGGGG-GGGGTCC
T ss_pred             hhCHHHHHHHHHHHhcCCeEEEECchHHH-HHHcCCC
Confidence            89999999999999999999999999866 9999984

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.78  E-value=6.2e-20  Score=161.32  Aligned_cols=122  Identities=20%  Similarity=0.215  Sum_probs=101.4

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecC---------------------CCCEEEc-Ccccccccc--C------CCc
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDAC---------------------HGVKIVA-DALVSNCRD--A------CGM   51 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~---------------------~g~~~~~-d~~~~~~~~--~------gG~   51 (344)
                      |++.|+++|+++|++|+++|++++.++...                     .+..+.+ +..+++++.  +      ||+
T Consensus        36 E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~  115 (247)
T 3n7t_A           36 EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGH  115 (247)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCST
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCCC
Confidence            889999999999999999999975333111                     1223555 777777752  2      776


Q ss_pred             hhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc------CCCCCCC---------------------------
Q 019238           52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW------GLLKGLK---------------------------   98 (344)
Q Consensus        52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a------Gll~g~~---------------------------   98 (344)
                      .....++.++.+.+||++++++|++|++||+|+ ++|+++      |||+||+                           
T Consensus       116 g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp-~~La~a~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~  194 (247)
T 3n7t_A          116 GALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGP-AMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIA  194 (247)
T ss_dssp             THHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGGGCBCTTSSBTTTTCEECCCCHHHHHHTTCHHHHHHTTCCCHH
T ss_pred             chhhhcccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHHhhcccCCccccCceecCCCcHHHhhhhhhhhccccchhhHH
Confidence            555678899999999999999999999999999 599999      9999976                           


Q ss_pred             -----------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                                             |||+|||+||.++++|++++|+++.+
T Consensus       195 ~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~  243 (247)
T 3n7t_A          195 DMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEG  243 (247)
T ss_dssp             HHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhh
Confidence                                   68999999999999999999999864

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.78  E-value=5.1e-20  Score=162.30  Aligned_cols=121  Identities=19%  Similarity=0.240  Sum_probs=103.1

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCccee---c-------------------CCCCEEEcCccccccc--cC------CCc
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVD---A-------------------CHGVKIVADALVSNCR--DA------CGM   51 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~---~-------------------~~g~~~~~d~~~~~~~--~~------gG~   51 (344)
                      |++.|+++|+++||+|+++|++++ ++.   +                   +.|+.+.++..+++++  ++      ||+
T Consensus        30 E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~  108 (243)
T 1rw7_A           30 EALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGH  108 (243)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCST
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCC
Confidence            788999999999999999999975 422   1                   2366788888888764  22      776


Q ss_pred             hhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC-------CCCCCC--------------------------
Q 019238           52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG-------LLKGLK--------------------------   98 (344)
Q Consensus        52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG-------ll~g~~--------------------------   98 (344)
                      +.+..+..++.+.+||++++++|++|++||+|+ ++|+++|       ||+||+                          
T Consensus       109 ~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~ag~~~~g~~lL~G~~~T~~~~~~e~~~~~~~~~p~~~~~~l  187 (243)
T 1rw7_A          109 GTLFDYPKAKDLQDIASEIYANGGVVAAVCHGP-AIFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATV  187 (243)
T ss_dssp             THHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCH
T ss_pred             CchhhcccCHHHHHHHHHHHHcCCEEEEECCCH-HHHHhcCcccCCceeeCCcEEeecCCHHHhhccccccccccccccH
Confidence            666778889999999999999999999999999 5999999       999853                          


Q ss_pred             ------------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           99 ------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        99 ------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                                              |||+|||+|+++++||++++|+++..
T Consensus       188 ~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          188 EDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             HHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             HHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence                                    67999999999999999999998754

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.76  E-value=1.2e-19  Score=163.82  Aligned_cols=125  Identities=14%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceec--------------CC---CCEEEcCcccccc-------ccC------CC
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDA--------------CH---GVKIVADALVSNC-------RDA------CG   50 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~--------------~~---g~~~~~d~~~~~~-------~~~------gG   50 (344)
                      +|++.|+++|+++||+|+++|++++ ++..              +.   |+.+.++..++++       .++      ||
T Consensus        76 ~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG  154 (291)
T 1n57_A           76 IETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGG  154 (291)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCC
Confidence            3788999999999999999999974 5542              22   7788888888873       233      77


Q ss_pred             chhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC----CCCCCC----------------------------
Q 019238           51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG----LLKGLK----------------------------   98 (344)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG----ll~g~~----------------------------   98 (344)
                      ++....+..++.+.+||++++++|++|++||+|+ ++|++++    ||+||+                            
T Consensus       155 ~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp-~~La~a~~~~GLL~Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~le~  233 (291)
T 1n57_A          155 HGALIGLPESQDVAAALQWAIKNDRFVISLCHGP-AAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGE  233 (291)
T ss_dssp             GGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHH
T ss_pred             cchhhhhhhCHHHHHHHHHHHHcCCEEEEECccH-HHHHhhcccCccCCCCEEEeCCCHHHhhhccccccccccchhHHH
Confidence            5444478889999999999999999999999999 5899985    998865                            


Q ss_pred             --------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhH
Q 019238           99 --------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (344)
Q Consensus        99 --------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~  127 (344)
                                          |||+|||+|+.+++||++++|+++.|+..
T Consensus       234 ~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          234 ELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             HHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence                                46899999999999999999999998653

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.74  E-value=3.2e-19  Score=156.11  Aligned_cols=136  Identities=26%  Similarity=0.325  Sum_probs=107.9

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCc-ce---------ecCCCCEEEcC-------ccccccc--cC------CCchhhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQL-RV---------DACHGVKIVAD-------ALVSNCR--DA------CGMPGAT   55 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~-~v---------~~~~g~~~~~d-------~~~~~~~--~~------gG~~~~~   55 (344)
                      +|++.|+++|+++||+|+++|++++. ++         ++++|+.+.++       ..+++++  ++      ||++...
T Consensus        25 ~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~  104 (232)
T 1vhq_A           25 HEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAK  104 (232)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHH
Confidence            37889999999999999999999642 13         78889988887       7777753  23      7755433


Q ss_pred             c----------ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCC-CCC--------------------------
Q 019238           56 N----------LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLK-GLK--------------------------   98 (344)
Q Consensus        56 ~----------~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~-g~~--------------------------   98 (344)
                      .          ++.++.+.+||++++++|++|++||+|+ ++|+++  |+ ||+                          
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~a--L~~Gr~~Tth~~~~~~~~l~~~g~~~~~~~~~  181 (232)
T 1vhq_A          105 NLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP-AMLPKI--FDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVD  181 (232)
T ss_dssp             TSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG-GGHHHH--CSSCCEECCCSCHHHHHHHHHTTCEECCCCTT
T ss_pred             HHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHH--hcCCCEEeccCCHHHHHHHHHcCCEEecCCCC
Confidence            2          2358999999999999999999999999 599999  78 887                          


Q ss_pred             ----C--CCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcc
Q 019238           99 ----D--GKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEF  145 (344)
Q Consensus        99 ----d--g~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~  145 (344)
                          |  ||+|||+    ++||++++|+++.|++.  .+++.+.|.++++++.
T Consensus       182 ~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~--~~~~~~~~~~~~~~~~  228 (232)
T 1vhq_A          182 DIVVDEDNKIVTTP----AYMLAQNIAEAASGIDK--LVSRVLVLAEEGGSHH  228 (232)
T ss_dssp             CCEEETTTTEEEEC----GGGTCSSHHHHHHHHHH--HHHHHHHHHC------
T ss_pred             ceEEecCCCEEECC----CHHHHHHHHHHHcCHHH--HHHHHHHhhhccCCcc
Confidence                3  9999996    88999999999999865  4778888888776653

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.68  E-value=8.4e-18  Score=147.28  Aligned_cols=121  Identities=15%  Similarity=0.117  Sum_probs=97.8

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCC----------cceecCCCCEEEcC-------ccccccc--cC------CCchhhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQ----------LRVDACHGVKIVAD-------ALVSNCR--DA------CGMPGAT   55 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~----------~~v~~~~g~~~~~d-------~~~~~~~--~~------gG~~~~~   55 (344)
                      +|++.|+++|+++|++|+++|++++          .+++++.|+.+.+|       ..+++++  ++      ||++...
T Consensus        42 ~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~  121 (242)
T 3l3b_A           42 REAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAK  121 (242)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhh
Confidence            3788999999999999999999864          25778889998888       6788764  23      7765543


Q ss_pred             c-----------ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC-CCCCCC-------------------------
Q 019238           56 N-----------LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG-LLKGLK-------------------------   98 (344)
Q Consensus        56 ~-----------~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG-ll~g~~-------------------------   98 (344)
                      .           ++.++.+.+||++++++|++|++||+|+ ++|+++| ||+||+                         
T Consensus       122 ~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~-~~La~ag~lL~Gr~~T~~~~~~~~l~~~Ga~~~~~~~~~  200 (242)
T 3l3b_A          122 NFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP-AVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIK  200 (242)
T ss_dssp             HHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH-HHHHHHHTTTCCCEECCCC----CHHHHTCEECCCCTTC
T ss_pred             hhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhCcccCCCEEEecCChHHHHHHCCCEEEcCCCCe
Confidence            2           3568999999999999999999999999 5999999 999998                         


Q ss_pred             ---C--CCEEcCCCCCcHHHHHHHHHHHHcChh
Q 019238           99 ---D--GKVVTTRGPGTPMEFVVALVEQLYGKG  126 (344)
Q Consensus        99 ---d--g~~iT~~g~~~~~~~~~~lv~~~~g~~  126 (344)
                         |  ||+|||+++..    +..+.|.+.|.+
T Consensus       201 vVvD~~g~liTs~a~~~----~~~~~e~~~g~~  229 (242)
T 3l3b_A          201 SVKDDVNRIFSCSAYMR----NDSLYNVYLGIQ  229 (242)
T ss_dssp             CEEETTTTEEEECGGGS----CCCHHHHHHHHH
T ss_pred             EEEECCCCEEECcCccc----CCCHHHHHhCHH
Confidence               6  99999998753    344555555443

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.66  E-value=5.1e-16  Score=152.00  Aligned_cols=165  Identities=14%  Similarity=0.140  Sum_probs=125.8

Q ss_pred             ChhHHHHHhhccccc-ccCCCc-ceeeeccceeeec-----CCCCeEEEEeC--CCcchhHHHHHHHHHHhcCCeEEEEE
Q 019238          124 GKGKADEVSGARVMR-ANHGDE-FTIAEFNPVQWTF-----DNSPQILVPIA--NGSEEMEAVIIIDILRRAKANVVVAS  194 (344)
Q Consensus       124 g~~~a~~v~~~~~~~-~~~~~~-~~l~~~~~~~~~~-----~~~~~v~ill~--~g~~~~e~~~~~~~l~~~~~~v~~~s  194 (344)
                      ..+.++.|++.+... |.+... +...+.+.+++..     ..++||+||+.  +||++.|+..+.+.|+++|+++++++
T Consensus       486 d~~~~~~v~~~l~~~~p~~~~~~~~~~~~~~ls~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs  565 (688)
T 2iuf_A          486 SDNLATRVASAIGVEAPKPNSSFYHDNTTAHIGAFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVA  565 (688)
T ss_dssp             CHHHHHHHHTTTTCCCCCCCGGGCCCCCCTTCSSSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCCCccCCCCCCCcccccCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEe
Confidence            567778888888653 222111 1112223333221     13589999999  99999999999999999999999999


Q ss_pred             eCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc----------------hHhhhcCHHHHHHHHHHHhcCCcE
Q 019238          195 VADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG----------------AQAFAKSKKLVNMLKKQKESNRPY  258 (344)
Q Consensus       195 ~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~----------------~~~l~~~~~l~~~l~~~~~~~k~I  258 (344)
                      ++.+ .         .+|.+++++++.+||+|+||||..+                ...|..++.+++||++++++||+|
T Consensus       566 ~~~g-~---------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpI  635 (688)
T 2iuf_A          566 ERXA-N---------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTV  635 (688)
T ss_dssp             SSCC-T---------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEE
T ss_pred             ccCC-c---------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEE
Confidence            9875 2         7888899988899999999999655                566889999999999999999999


Q ss_pred             EEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCCcccHHHHHHHHHHHh
Q 019238          259 GAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKF  326 (344)
Q Consensus       259 ~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g~~~~~~~~~~li~~l  326 (344)
                      ++||+|+++ |..+|+..                         .|+++||+.++  .-+|+..+++.+
T Consensus       636 aAIc~ap~v-L~~aGi~~-------------------------~d~GVvts~~~--~~~f~~~fi~~l  675 (688)
T 2iuf_A          636 GALGSGSDA-LESGQISS-------------------------ERQGVYTGKNA--GDAFAKDIKSGL  675 (688)
T ss_dssp             EEEGGGHHH-HHHTTCCT-------------------------TSTTEEEESSS--SHHHHHHHHHHH
T ss_pred             EEECchHHH-HHHcCCCC-------------------------CCCCEEEcCCc--cHHHHHHHHHHH
Confidence            999999876 99999853                         35678887776  234555555544

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.61  E-value=3.8e-15  Score=145.44  Aligned_cols=141  Identities=14%  Similarity=0.093  Sum_probs=110.9

Q ss_pred             ChhHHHHHhhcccccc-cCCC-cceeeeccceeee-----cCCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCeEEEEEe
Q 019238          124 GKGKADEVSGARVMRA-NHGD-EFTIAEFNPVQWT-----FDNSPQILVPIANG-SEEMEAVIIIDILRRAKANVVVASV  195 (344)
Q Consensus       124 g~~~a~~v~~~~~~~~-~~~~-~~~l~~~~~~~~~-----~~~~~~v~ill~~g-~~~~e~~~~~~~l~~~~~~v~~~s~  195 (344)
                      ..+.++.|++.+.... .+.. .....+.+.+++.     ....+||+||+.+| |++.|+..+.+.|+++|++++++++
T Consensus       494 d~~~~~~va~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp  573 (688)
T 3ej6_A          494 SNDVAKRVAVALGLEAPQPDPTYYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAE  573 (688)
T ss_dssp             CHHHHHHHHHHHTSCCCSCCTTSCCCCCCSSCCSSSSCCSCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCCCCCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeC
Confidence            5566677777666542 2111 1112223333322     23568999999999 9999999999999999999999999


Q ss_pred             CCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-------hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhh
Q 019238          196 ADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-------AQAFAKSKKLVNMLKKQKESNRPYGAICASPALV  268 (344)
Q Consensus       196 ~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-------~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~l  268 (344)
                      +.|      .|    +|.+++++++.+||+|+||||..+       ++.+..++.+++||+++++++|+|++||+|+++ 
T Consensus       574 ~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~l-  642 (688)
T 3ej6_A          574 YLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKA-  642 (688)
T ss_dssp             SCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHH-
T ss_pred             CCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHH-
Confidence            875      24    788999998899999999999654       256888999999999999999999999999876 


Q ss_pred             hhhcCCC
Q 019238          269 LEPHGLL  275 (344)
Q Consensus       269 La~aGlL  275 (344)
                      |..+|+-
T Consensus       643 L~~AGI~  649 (688)
T 3ej6_A          643 LQSIGVE  649 (688)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999984

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.55  E-value=7.7e-15  Score=145.46  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..|+++|+++|++++++|+++ .+|+++.|+.+.+|..+++++  ++      ||..+...+..++.+++||++++++
T Consensus       549 El~~p~dvL~~AG~~V~ivS~~g-g~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~  627 (715)
T 1sy7_A          549 AYDAAYAAISANQAIPLVIGPRR-SKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGH  627 (715)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCS-SCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCEEEEEECCC-CceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhC
Confidence            67899999999999999999996 489999999999999998864  22      7755677788899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHc-CCCCCCC--------CCCEEcCCCCC------------cHHHHHHHHHHHHcC
Q 019238           74 GRLYAAICVFLAVALGSW-GLLKGLK--------DGKVVTTRGPG------------TPMEFVVALVEQLYG  124 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~a-Gll~g~~--------dg~~iT~~g~~------------~~~~~~~~lv~~~~g  124 (344)
                      ||+|++||+|+ ++|+++ ||.+-+.        |||+|||+|+.            +..+|+..+++.+..
T Consensus       628 gK~IaAIC~G~-~lLA~AlGL~~L~~aGa~~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          628 LKAIGATGEAV-DLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             TCEEEEETTHH-HHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             CCEEEEECHHH-HHHHHccCcHhHHhcCCCcEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence            99999999999 599999 9955332        99999999996            667788888888764

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.32  E-value=3.5e-12  Score=125.40  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=94.2

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|++.|+++|+++|++|+++|+++ .+|++++|+.+.+|..+++++.  +      ||  +...++.++.++.||+++++
T Consensus       614 ~El~~pvdaLr~AG~~V~vVS~~~-g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~Lr~d~~vl~~Vre~~~  690 (753)
T 3ttv_A          614 ADLLAILKALKAKGVHAKLLYSRM-GEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADIADNGDANYYLMEAYK  690 (753)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESSS-SEEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEcCC-CeEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHhhhCHHHHHHHHHHHh
Confidence            378899999999999999999996 4899999999999999998863  2      66  67788999999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      ++|+|++||+|++ +|+++||-+ ..|..++++....  -+++-.+++.+
T Consensus       691 ~gKpIAAIC~Gp~-lLa~AGL~~-~~~~g~~~~~~~~--~~~~~~~~~~~  736 (753)
T 3ttv_A          691 HLKPIALAGDARK-FKATIKIAD-QGEEGIVEADSAD--GSFMDELLTLM  736 (753)
T ss_dssp             TTCCEEEEGGGGG-GGGGGTCCT-TCBTTEEEESSCC--HHHHHHHHHHH
T ss_pred             cCCeEEEECchHH-HHHHcCCCC-CCCCcEEEcCcch--HHHHHHHHHHH
Confidence            9999999999995 999999843 2355677765442  23444555544

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.07  E-value=3.4e-10  Score=111.09  Aligned_cols=107  Identities=21%  Similarity=0.107  Sum_probs=87.5

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchh----------------hhcc
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPG----------------ATNL   57 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~----------------~~~~   57 (344)
                      |+..+.+.|+++|+++.+||+..+.          .+|.++++++.  +      ||..+                ...|
T Consensus       546 E~~~~~~~L~~aG~~V~vVs~~~g~----------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L  615 (688)
T 2iuf_A          546 QGAKLQVALSSVGVDVVVVAERXAN----------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTL  615 (688)
T ss_dssp             HHHHHHHHHGGGTCEEEEEESSCCT----------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSS
T ss_pred             HHHHHHHHHHHCCCEEEEEeccCCc----------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhc
Confidence            7789999999999999999997531          77777777642  2      77666                7789


Q ss_pred             cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCCCCCcHHHHHHHHHHHHc
Q 019238           58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY  123 (344)
Q Consensus        58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~~~~lv~~~~  123 (344)
                      +.++.+++||+++++.||+|++||+|++ +|.++|+..  .|.++||++.+  .-+++-.+++.+.
T Consensus       616 ~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~--~d~GVvts~~~--~~~f~~~fi~~la  676 (688)
T 2iuf_A          616 YPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISS--ERQGVYTGKNA--GDAFAKDIKSGLS  676 (688)
T ss_dssp             SCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCT--TSTTEEEESSS--SHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCC--CCCCEEEcCCc--cHHHHHHHHHHHH
Confidence            9999999999999999999999999996 999999953  47899999888  2345556655543

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.07  E-value=1.9e-10  Score=98.79  Aligned_cols=95  Identities=26%  Similarity=0.360  Sum_probs=74.4

Q ss_pred             CCCeEEEEeCCCcch-hHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          159 NSPQILVPIANGSEE-MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~-~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      +++||+|+.++++.. .+   +.+.|+++|+++.+++..                   ++.  .++|.|+||||......
T Consensus         1 m~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~~--~~~d~lil~Gg~~~~~~   56 (213)
T 3d54_D            1 MKPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DKL--DDYELIILPGGFSYGDY   56 (213)
T ss_dssp             CCCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CCC--SSCSEEEECEECGGGGC
T ss_pred             CCcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CCc--ccCCEEEECCCCchhhh
Confidence            368999999999874 44   489999999988877532                   122  67999999998542222


Q ss_pred             -----hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCC
Q 019238          238 -----FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK  278 (344)
Q Consensus       238 -----l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~  278 (344)
                           +..++.+.+||+++.+++++|.+||.|..+ |+.+|+|.|+
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~ql-La~aGll~g~  101 (213)
T 3d54_D           57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQI-LIEMGLLKGA  101 (213)
T ss_dssp             SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHH-HHHHTSSCSE
T ss_pred             hccccccccHHHHHHHHHHHHCCCEEEEECHHHHH-HHHcCCCCCC
Confidence                 234567899999999999999999999755 9999999884

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.80  E-value=1.8e-08  Score=98.69  Aligned_cols=90  Identities=22%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchh-------hhcccCChHHHHH
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPG-------ATNLKESEVLESI   66 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~-------~~~~~~~~~~~~~   66 (344)
                      |+..|.+.|+++|+++++||++.+      .|    +|.++++++.  +      ||..+       ...|+.++.++.|
T Consensus       553 El~~p~~aL~~aGa~V~vVsp~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~f  622 (688)
T 3ej6_A          553 KAKALKEQLEKDGLKVTVIAEYLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQI  622 (688)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHH
Confidence            678899999999999999999864      34    7888887753  2      77544       2678899999999


Q ss_pred             HHHHhhCCCEEEEEchhHHHHHHHcCCCCCCCCCCEEc
Q 019238           67 VKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVT  104 (344)
Q Consensus        67 l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~dg~~iT  104 (344)
                      |+++++.+|+|++||+|++ +|.++|+-.  .|..+++
T Consensus       623 V~e~~~hgKpIAAIchgp~-lL~~AGI~~--~~~g~~~  657 (688)
T 3ej6_A          623 LTDGYRWGKPVAAVGSAKK-ALQSIGVEE--KEAGVYA  657 (688)
T ss_dssp             HHHHHHTTCCEEEEGGGHH-HHHHTTCCS--SSTTEEE
T ss_pred             HHHHHHcCCEEEEeCccHH-HHHHcCCCC--CCCeEEe
Confidence            9999999999999999996 999999842  2446676

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.27  E-value=1.6e-06  Score=74.44  Aligned_cols=86  Identities=22%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH-hh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~-~l  238 (344)
                      .++|+|+.+++.    +....+.|+++|+++.+++..                   ++.  .++|.|++|||..... .+
T Consensus        23 ~~~I~il~~~~~----~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~Dglil~GG~~~~~~~~   77 (219)
T 1q7r_A           23 NMKIGVLGLQGA----VREHVRAIEACGAEAVIVKKS-------------------EQL--EGLDGLVLPGGESTTMRRL   77 (219)
T ss_dssp             CCEEEEESCGGG----CHHHHHHHHHTTCEEEEECSG-------------------GGG--TTCSEEEECCCCHHHHHHH
T ss_pred             CCEEEEEeCCCC----cHHHHHHHHHCCCEEEEECCH-------------------HHH--hhCCEEEECCCChHHHHHH
Confidence            478999976542    223468889999888766531                   123  5799999999964322 23


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+..+.++|+++.++++||.+||.|..+ |+.
T Consensus        78 ~~~~~~~~~i~~~~~~~~PilGIC~G~Ql-L~~  109 (219)
T 1q7r_A           78 IDRYGLMEPLKQFAAAGKPMFGTCAGLIL-LAK  109 (219)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETTHHHH-HEE
T ss_pred             hhhhHHHHHHHHHHHcCCeEEEECHHHHH-HHH
Confidence            33455679999999999999999999876 765

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.24  E-value=2.6e-06  Score=71.79  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=59.9

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH-hh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~-~l  238 (344)
                      |+||+|+-+.+ ...+   ..+.|+++|+++.+++..                   ++.  .++|.|++|||..... .+
T Consensus         1 ~m~I~il~~~~-~~~~---~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~   55 (196)
T 2nv0_A            1 MLTIGVLGLQG-AVRE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL   55 (196)
T ss_dssp             CCEEEEECSSS-CCHH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEEccC-CcHH---HHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence            47899986532 2222   358889999887765421                   123  5789999999964332 23


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+..+.++|+++.+++++|.+||.|..+ |+.
T Consensus        56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q~-l~~   87 (196)
T 2nv0_A           56 IDTYQFMEPLREFAAQGKPMFGTCAGLII-LAK   87 (196)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHHH-HSB
T ss_pred             hhhHHHHHHHHHHHHCCCcEEEECHHHHH-HHH
Confidence            33445689999999999999999999866 765

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.14  E-value=4.7e-06  Score=70.96  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH-h
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-A  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~-~  237 (344)
                      ..+||+|+-+++    .+....+.|++.|+++.+++..                   ++.  .++|.|++|||..... .
T Consensus        19 ~~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~   73 (208)
T 2iss_D           19 SHMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP-------------------EQL--DMVDGLILPGGESTTMIR   73 (208)
T ss_dssp             -CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECSSCHHHHHH
T ss_pred             CCcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCcHHHHHh
Confidence            457999996633    4555778888888887765421                   123  4689999999953221 1


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +..+..+.++|+++.+++++|.+||.|..+ |+.+
T Consensus        74 ~~~~~~~~~~i~~~~~~g~PilGIC~G~Ql-L~~~  107 (208)
T 2iss_D           74 ILKEMDMDEKLVERINNGLPVFATCAGVIL-LAKR  107 (208)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETHHHHH-HEEE
T ss_pred             hhhhhhHHHHHHHHHHCCCeEEEECHHHHH-HHHH
Confidence            222344689999999999999999999776 7654

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.07  E-value=6.9e-06  Score=68.77  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc-chHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG-GAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~-~~~~l  238 (344)
                      +++|+|+..++    .+....+.|++.|+++.+++..                   ++.  +++|.|++|||.. ....+
T Consensus         2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~dglil~GG~~~~~~~~   56 (191)
T 2ywd_A            2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------EHL--EGLKALIVPGGESTTIGKL   56 (191)
T ss_dssp             -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------GGG--TTCSEEEECSSCHHHHHHH
T ss_pred             CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------hhh--ccCCEEEECCCChhhhHHh
Confidence            47899998764    3455788999999877665321                   123  5689999999942 22333


Q ss_pred             hcCHHHHHHHHHHHhcC-CcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESN-RPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~-k~I~aic~G~~~lLa~a  272 (344)
                      ..+..+.++|+++.+++ +||.+||.|..+ |+.+
T Consensus        57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~-l~~~   90 (191)
T 2ywd_A           57 AREYGIEDEVRKRVEEGSLALFGTCAGAIW-LAKE   90 (191)
T ss_dssp             HHHTTHHHHHHHHHHTTCCEEEEETHHHHH-HEEE
T ss_pred             hhhhhHHHHHHHHHHCCCCeEEEECHHHHH-HHHH
Confidence            32456789999999999 999999999766 7654

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.07  E-value=1.2e-05  Score=67.97  Aligned_cols=88  Identities=23%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh-
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF-  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l-  238 (344)
                      ++||+|+-+. +  ..+..+.+.|++.|+++.+++..                   ++.  .++|.|++||+....... 
T Consensus         2 ~~~I~iid~~-~--~~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~d~lil~G~g~~~~~~~   57 (200)
T 1ka9_H            2 RMKALLIDYG-S--GNLRSAAKALEAAGFSVAVAQDP-------------------KAH--EEADLLVLPGQGHFGQVMR   57 (200)
T ss_dssp             -CEEEEECSS-C--SCHHHHHHHHHHTTCEEEEESST-------------------TSC--SSCSEEEECCCSCHHHHHH
T ss_pred             ccEEEEEeCC-C--ccHHHHHHHHHHCCCeEEEecCh-------------------HHc--ccCCEEEECCCCcHHHHHH
Confidence            4789888443 2  22234589999999888766421                   122  578999999942211111 


Q ss_pred             -hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 -~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       ..+..+.++|+++.++++||.+||.|..+ |+.+
T Consensus        58 ~l~~~~~~~~i~~~~~~~~PilGIC~G~Ql-l~~~   91 (200)
T 1ka9_H           58 AFQESGFVERVRRHLERGLPFLGICVGMQV-LYEG   91 (200)
T ss_dssp             TTSSSCTHHHHHHHHHTTCCEEECTHHHHT-TSSE
T ss_pred             HHHhcCHHHHHHHHHHcCCeEEEEcHHHHH-HHHh
Confidence             12245789999999999999999999766 8877

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=97.98  E-value=3.4e-05  Score=66.91  Aligned_cols=94  Identities=16%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      |||.++..+.++...  .+.+.++..|++++++....+.+        + |    ++.  .+||+|||+||..++.....
T Consensus         1 m~i~vi~h~~~e~~g--~~~~~l~~~g~~~~~~~~~~~~~--------~-p----~~~--~~~d~lii~GGp~~~~~~~~   63 (236)
T 3l7n_A            1 MRIHFILHETFEAPG--AYLAWAALRGHDVSMTKVYRYEK--------L-P----KDI--DDFDMLILMGGPQSPSSTKK   63 (236)
T ss_dssp             CEEEEEECCTTSCCH--HHHHHHHHTTCEEEEEEGGGTCC--------C-C----SCG--GGCSEEEECCCSSCTTCCTT
T ss_pred             CeEEEEeCCCCCCch--HHHHHHHHCCCeEEEEeeeCCCC--------C-C----CCc--cccCEEEECCCCCCcccccc
Confidence            588888877776554  44577888999999888755311        1 1    122  57999999999654322111


Q ss_pred             C------HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 S------KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~------~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +      ....++|+++.+++++|.+||-|..+ |+.+
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Ql-L~~~  100 (236)
T 3l7n_A           64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQL-MGVA  100 (236)
T ss_dssp             TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHH-HHHH
T ss_pred             cCcccchHHHHHHHHHHHHcCCCEEEEchHHHH-HHHH
Confidence            1      34789999999999999999999776 7654

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=97.95  E-value=2.6e-05  Score=68.14  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=67.1

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-h
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-F  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-l  238 (344)
                      +|+|.|+..+.+.....  +.+.|++.|++++++....+.+.             ..+.  .+||.|||+||...... .
T Consensus         3 ~~~vliiqh~~~e~~~~--i~~~l~~~G~~v~v~~~~~~~~~-------------p~~~--~~~d~lIl~GGp~~~~d~~   65 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGH--FGDFLAGEHIPFQVLRMDRSDPL-------------PAEI--RDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             CCCEEEEESSSSCCCHH--HHHHHHHTTCCEEEEEGGGTCCC-------------CSCG--GGSSEEEECCCSSCTTSCC
T ss_pred             CCeEEEEECCCCCCHHH--HHHHHHHCCCeEEEEeccCCCcC-------------cCcc--ccCCEEEECCCCCcccccc
Confidence            47898888777665554  45678999999998877543110             1123  57999999999543221 1


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .......++|+++.+.+++|.+||-|..+ |+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Ql-l~~~   98 (250)
T 3m3p_A           66 PWMPTLLALIRDAVAQRVPVIGHCLGGQL-LAKA   98 (250)
T ss_dssp             TTHHHHHHHHHHHHHHTCCEEEETHHHHH-HHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEECHHHHH-HHHH
Confidence            12245789999999999999999999776 6654

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.78  E-value=7.5e-05  Score=62.34  Aligned_cols=85  Identities=19%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~  242 (344)
                      |+|+=+.+..   ...+.+.|+++|+++.++....                .+++....++|.|++|||. .+.   +..
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~---~~~   59 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLE---NTG   59 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTT---CCT
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chh---hhh
Confidence            6666554333   3467888999999888776532                1233322469999999995 332   245


Q ss_pred             HHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          243 KLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       243 ~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ...++|+++.+++++|.+||.|..+ |+.
T Consensus        60 ~~~~~i~~~~~~~~PilGIC~G~Q~-l~~   87 (189)
T 1wl8_A           60 NCEKVLEHYDEFNVPILGICLGHQL-IAK   87 (189)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHHH-HHH
T ss_pred             hHHHHHHHHhhCCCeEEEEcHHHHH-HHH
Confidence            5688998777899999999999876 654

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=97.77  E-value=0.0001  Score=77.88  Aligned_cols=101  Identities=14%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             CCCeEEEEeCCCcch-hHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH-
Q 019238          159 NSPQILVPIANGSEE-MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-  236 (344)
Q Consensus       159 ~~~~v~ill~~g~~~-~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~-  236 (344)
                      .++||+|+.++|..- .|   +...|+.+|++..++..+.           +..  .-.++  .+||.|++|||....+ 
T Consensus      1046 ~~pkVaIi~~~G~N~~~~---~~~A~~~aG~~~~~v~~~d-----------l~~--~~~~l--~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVE---MAAAFHRAGFDAIDVHMSD-----------LLG--GRIGL--GNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHH---HHHHHHHTTCEEEEEEHHH-----------HHT--TSCCG--GGCSEEEECCSCGGGGT
T ss_pred             CCCEEEEEecCCcCCHHH---HHHHHHHhCCceEEEeecc-----------ccc--CcccH--hhCCEEEECCCCcchhh
Confidence            467999999998864 66   4457778899887765321           000  01223  6789999999953222 


Q ss_pred             ---------hhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhhhc-CCCCCC
Q 019238          237 ---------AFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPH-GLLKGK  278 (344)
Q Consensus       237 ---------~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa~a-GlL~g~  278 (344)
                               ....++.+.+.+++++ ++++++.+||+|..+ |.++ |||.|.
T Consensus      1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~Ql-L~e~~gllPg~ 1159 (1303)
T 3ugj_A         1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQM-MSNLRELIPGS 1159 (1303)
T ss_dssp             TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHH-HHTTGGGSTTC
T ss_pred             hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHH-HHHhcCcCCCC
Confidence                     2345677888899876 689999999999877 8888 999986

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=97.76  E-value=1.7e-05  Score=67.60  Aligned_cols=76  Identities=21%  Similarity=0.255  Sum_probs=53.3

Q ss_pred             hhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhc-----ccCChHHHHHHHHHhhCCCE
Q 019238            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN-----LKESEVLESIVKKQASDGRL   76 (344)
Q Consensus         5 ~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~-----~~~~~~~~~~l~~~~~~g~~   76 (344)
                      .+.+.|+++|+++.+++...                .+++.+-.   ||......     +..++.+.+||+++.+++++
T Consensus        18 ~~~~~l~~~g~~~~~~~~~~----------------~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p   81 (213)
T 3d54_D           18 DAYHALEINGFEPSYVGLDD----------------KLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKL   81 (213)
T ss_dssp             HHHHHHHTTTCEEEEECTTC----------------CCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCE
T ss_pred             HHHHHHHHCCCEEEEEecCC----------------CcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCE
Confidence            45788999999999887541                11122111   44221221     12356789999999999999


Q ss_pred             EEEEchhHHHHHHHcCCCCCC
Q 019238           77 YAAICVFLAVALGSWGLLKGL   97 (344)
Q Consensus        77 i~aiC~g~~~~La~aGll~g~   97 (344)
                      |.+||.|. .+|+.+|+|+|+
T Consensus        82 ilgIC~G~-qlLa~aGll~g~  101 (213)
T 3d54_D           82 IMGICNGF-QILIEMGLLKGA  101 (213)
T ss_dssp             EEECHHHH-HHHHHHTSSCSE
T ss_pred             EEEECHHH-HHHHHcCCCCCC
Confidence            99999999 599999999763

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.74  E-value=6.2e-05  Score=64.80  Aligned_cols=87  Identities=21%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhc---CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~---~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      .++|+|+.+++..    ....+.|+++   |.++..++.                   .++.  .++|.||+|||.....
T Consensus         3 ~~~I~Il~~~~~~----~~~~~~l~~~~~~G~~~~~~~~-------------------~~~l--~~~dglil~GG~~~~~   57 (227)
T 2abw_A            3 EITIGVLSLQGDF----EPHINHFIKLQIPSLNIIQVRN-------------------VHDL--GLCDGLVIPGGESTTV   57 (227)
T ss_dssp             CEEEEEECTTSCC----HHHHHHHHTTCCTTEEEEEECS-------------------HHHH--HTCSEEEECCSCHHHH
T ss_pred             CcEEEEEeCCCCc----HHHHHHHHHhccCCeEEEEEcC-------------------cccc--ccCCEEEECCCcHHHH
Confidence            3689999877432    2357788887   655544321                   1233  4689999999953222


Q ss_pred             -hhhcC--HHHHHHHHHHHhc-CCcEEEEcchhhhhhhhc
Q 019238          237 -AFAKS--KKLVNMLKKQKES-NRPYGAICASPALVLEPH  272 (344)
Q Consensus       237 -~l~~~--~~l~~~l~~~~~~-~k~I~aic~G~~~lLa~a  272 (344)
                       .+..+  ..+.++|+++.++ ++||.+||.|..+ |+.+
T Consensus        58 ~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Ql-L~~~   96 (227)
T 2abw_A           58 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCIL-LSKN   96 (227)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHH-TEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHH-HHHH
Confidence             22232  5689999999999 9999999999765 7754

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.70  E-value=8.3e-05  Score=62.45  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH
Q 019238          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (344)
Q Consensus       163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~  242 (344)
                      |+|+=..+..  . ..+.+.|++.|+++.++..+..               .++++...+||.|+++||........+.+
T Consensus         4 i~iid~~~s~--~-~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~   65 (195)
T 1qdl_B            4 TLIIDNYDSF--V-YNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             EEEEECSCSS--H-HHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             EEEEECCCch--H-HHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence            6666533322  2 4678899999999887765421               13333223699999988754333222223


Q ss_pred             HHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          243 KLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       243 ~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...++|+++ +.++||.+||.|..+ |+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~Ql-L~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQA-IGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHHH-HHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHHH-HHHH
Confidence            456888875 789999999999876 7654

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.61  E-value=6e-05  Score=64.07  Aligned_cols=88  Identities=17%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |++||+|+=|- .  .-+..+...|++.|++++++..                   .+++  .++|.||+||+-. ....
T Consensus         1 M~~~I~iiD~g-~--~n~~si~~al~~~G~~~~v~~~-------------------~~~l--~~~D~lilPG~g~-~~~~   55 (211)
T 4gud_A            1 MTQNVVIIDTG-C--ANISSVKFAIERLGYAVTISRD-------------------PQVV--LAADKLFLPGVGT-ASEA   55 (211)
T ss_dssp             --CCEEEECCC-C--TTHHHHHHHHHHTTCCEEEECC-------------------HHHH--HHCSEEEECCCSC-HHHH
T ss_pred             CCCEEEEEECC-C--ChHHHHHHHHHHCCCEEEEECC-------------------HHHH--hCCCEEEECCCCC-HHHH
Confidence            34688877443 2  2345577889999988875321                   1333  4679999999632 3222


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...-...++++...+.++||.+||.|..+ |+.+
T Consensus        56 ~~~~~~~~~i~~~~~~~~PvlGIClG~Ql-L~~~   88 (211)
T 4gud_A           56 MKNLTERDLIELVKRVEKPLLGICLGMQL-LGKL   88 (211)
T ss_dssp             HHHHHHTTCHHHHHHCCSCEEEETHHHHT-TSSE
T ss_pred             HHHHHhcChHHHHHHcCCCEEEEchhHhH-HHHH
Confidence            22222334567777889999999999765 7653

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.48  E-value=0.00037  Score=58.66  Aligned_cols=86  Identities=17%  Similarity=0.250  Sum_probs=55.7

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcC-----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~  235 (344)
                      |||+|+-++.-..   ..+.+.|++.|     +++.++.. .              +      . .++|.|++||+....
T Consensus         1 m~I~iid~~~g~~---~s~~~~l~~~G~~~~~~~~~~~~~-~--------------~------~-~~~dglilpG~g~~~   55 (201)
T 1gpw_B            1 MRIGIISVGPGNI---MNLYRGVKRASENFEDVSIELVES-P--------------R------N-DLYDLLFIPGVGHFG   55 (201)
T ss_dssp             CEEEEECCSSSCC---HHHHHHHHHHSTTBSSCEEEEECS-C--------------C------S-SCCSEEEECCCSCSH
T ss_pred             CEEEEEecCCchH---HHHHHHHHHcCCCCCceEEEEECC-C--------------c------c-cCCCEEEECCCCcHH
Confidence            5788886652222   33446777777     77665442 1              1      1 468999999952211


Q ss_pred             Hhh--hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          236 QAF--AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       236 ~~l--~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...  ..+..+.++|+++.++++||.+||.|..+ |+.+
T Consensus        56 ~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Ql-l~~~   93 (201)
T 1gpw_B           56 EGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQL-LFEE   93 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHT-TSSE
T ss_pred             HHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHH-HHHh
Confidence            111  11123778999999999999999999766 7765

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.46  E-value=0.00028  Score=58.63  Aligned_cols=83  Identities=23%  Similarity=0.283  Sum_probs=54.1

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-hh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-FA  239 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-l~  239 (344)
                      |||+|+-.+|    .+....+.|+++|+++.++...                   ++.  .++|.|++|||...... +.
T Consensus         1 m~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------~~~--~~~dglil~GG~~~~~~~~~   55 (186)
T 2ywj_A            1 MIIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------EDL--EGIDALIIPGGESTAIGKLM   55 (186)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------GGG--TTCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCchhhhhhh
Confidence            5788886543    2333468889999877665320                   123  57899999999532221 11


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ....+.++++   ++++||.+||.|..+ |+.+
T Consensus        56 ~~~~~~~~i~---~~~~PilGIC~G~Ql-l~~~   84 (186)
T 2ywj_A           56 KKYGLLEKIK---NSNLPILGTCAGMVL-LSKG   84 (186)
T ss_dssp             HHTTHHHHHH---TCCCCEEEETHHHHH-HSSC
T ss_pred             hccCHHHHHH---hcCCcEEEECHHHHH-HHHH
Confidence            1223556665   788999999999776 7765

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.36  E-value=0.00024  Score=61.64  Aligned_cols=94  Identities=20%  Similarity=0.273  Sum_probs=60.4

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---  237 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---  237 (344)
                      .||.|+  ..+.......+...|+..|+++.++-.+.+             +...+..  .++|.|++|||......   
T Consensus        13 ~~~~~i--~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-------------~~~~~~l--~~~Dglil~GG~~~~~~~~~   75 (239)
T 1o1y_A           13 VRVLAI--RHVEIEDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEEEK   75 (239)
T ss_dssp             CEEEEE--CSSTTSSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCTTT
T ss_pred             eEEEEE--ECCCCCCchHHHHHHHhCCCcEEEeCCcCc-------------cccccch--hcCCEEEECCCCccccCCcc
Confidence            455444  444444555778899999988875443221             0001122  56899999998533221   


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...-..+.++|+++.++++||.+||-|..+ |+.+
T Consensus        76 ~~~l~~~~~~i~~~~~~~~PiLGIC~G~Ql-L~~a  109 (239)
T 1o1y_A           76 YPFLKYEFQLIEEILKKEIPFLGICLGSQM-LAKV  109 (239)
T ss_dssp             CTHHHHHHHHHHHHHHHTCCEEEETHHHHH-HHHH
T ss_pred             ChhHHHHHHHHHHHHHCCCCEEEEchhHHH-HHHH
Confidence            111135789999999999999999999876 6653

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.24  E-value=0.00033  Score=60.33  Aligned_cols=96  Identities=14%  Similarity=0.094  Sum_probs=63.0

Q ss_pred             CCCeEEEEeCCC---cchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-
Q 019238          159 NSPQILVPIANG---SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-  234 (344)
Q Consensus       159 ~~~~v~ill~~g---~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-  234 (344)
                      ..+||+|+-+-.   -.+.-+....+.|++.|+++..+....              + ..+.+  .+.|.|++|||... 
T Consensus        30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~--------------d-~~~~l--~~ad~I~lpGG~~~~   92 (229)
T 1fy2_A           30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVA--------------D-PLAAI--EKAEIIIVGGGNTFQ   92 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSS--------------C-HHHHH--HHCSEEEECCSCHHH
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccc--------------c-HHHHH--hcCCEEEECCCcHHH
Confidence            347888887642   223344567788999887665432111              1 12344  56799999998421 


Q ss_pred             hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       235 ~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .........+.+.|++++++|++++++|.|+.+ |+..
T Consensus        93 ~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~-l~~~  129 (229)
T 1fy2_A           93 LLKESRERGLLAPMADRVKRGALYIGWSAGANL-ACPT  129 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHH-TSSB
T ss_pred             HHHHHHHCChHHHHHHHHHcCCEEEEECHHHHh-hccc
Confidence            122334556888999999999999999999654 7653

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.21  E-value=0.00039  Score=58.77  Aligned_cols=98  Identities=11%  Similarity=0.036  Sum_probs=65.0

Q ss_pred             CCeEEEEeCCCc---chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-h
Q 019238          160 SPQILVPIANGS---EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-A  235 (344)
Q Consensus       160 ~~~v~ill~~g~---~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~  235 (344)
                      .+||+++-+-.-   ...-+....+.|++.|++++.+.....           .++...+.+  .+.|+|++|||... .
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l--~~ad~I~l~GG~~~~l   93 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKL--RKNDFIYVTGGNTFFL   93 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHH--HHSSEEEECCSCHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHH--HhCCEEEECCCCHHHH
Confidence            488988875421   112345678999999998776543321           011111333  56799999998421 2


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ........+.+.|++.+++|++++++|.|+.+ ++.
T Consensus        94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~-l~~  128 (206)
T 3l4e_A           94 LQELKRTGADKLILEEIAAGKLYIGESAGAVI-TSP  128 (206)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCEEEEETHHHHT-TSS
T ss_pred             HHHHHHCChHHHHHHHHHcCCeEEEECHHHHH-hcc
Confidence            22345667899999999999999999999654 653

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.18  E-value=0.0013  Score=60.66  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=63.4

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      +||+++=+ |+.    ....+.|.+.|+++.++..+.                ..+++...++|.|+++||.+.+.   +
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~----------------~~e~i~~~~~DGliLsGGPgdp~---~  246 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDPA---P  246 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCST---T
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC----------------CHHHHhhcCCCEEEEeCCCCChH---H
Confidence            57887777 654    347788889998887764432                12333334699999999965432   3


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ....+++|+++.++++||.+||-|..+ |+.+
T Consensus       247 ~~~~~~~Ir~~~~~~~PILGIClG~QL-La~A  277 (379)
T 1a9x_B          247 CDYAITAIQKFLETDIPVFGICLGHQL-LALA  277 (379)
T ss_dssp             CHHHHHHHHHHTTSCCCEEEETHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECchHHH-HHHH
Confidence            567889999999999999999999876 6643

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.14  E-value=0.00088  Score=56.91  Aligned_cols=89  Identities=19%  Similarity=0.192  Sum_probs=56.2

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC-ccchHh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG-LGGAQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG-~~~~~~  237 (344)
                      .++||.++=+.+...   ..+.+.|+++|+++.++..+.                ..+++  .++|.||+||| ......
T Consensus        12 ~~~~i~~id~~~~~~---~~~~~~l~~~G~~~~vv~~~~----------------~~~~l--~~~DglIl~GG~p~~~~~   70 (212)
T 2a9v_A           12 HMLKIYVVDNGGQWT---HREWRVLRELGVDTKIVPNDI----------------DSSEL--DGLDGLVLSGGAPNIDEE   70 (212)
T ss_dssp             CCCBEEEEEESCCTT---CHHHHHHHHTTCBCCEEETTS----------------CGGGG--TTCSEEEEEEECSCGGGT
T ss_pred             ccceEEEEeCCCccH---HHHHHHHHHCCCEEEEEeCCC----------------CHHHH--hCCCEEEECCCCCCCCcc
Confidence            467877766543333   346677888888776655432                23444  45999999999 443333


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ....+.+.+++   .++++||.+||-|..+ |+.+
T Consensus        71 ~~~~~~l~~~~---~~~~~PiLGIC~G~Ql-l~~~  101 (212)
T 2a9v_A           71 LDKLGSVGKYI---DDHNYPILGICVGAQF-IALH  101 (212)
T ss_dssp             GGGHHHHHHHH---HHCCSCEEEETHHHHH-HHHH
T ss_pred             cccchhHHHHH---HhCCCCEEEEChHHHH-HHHH
Confidence            21233444444   4789999999999776 6654

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.77  E-value=0.0028  Score=56.61  Aligned_cols=113  Identities=9%  Similarity=0.063  Sum_probs=61.9

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCC--eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKA--NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~--~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~  236 (344)
                      +++||+||-...-...--..+...|.....  +++++....+..-.++....-.--..+++....+||.+||-|+.....
T Consensus        34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~  113 (301)
T 2vdj_A           34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL  113 (301)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTS
T ss_pred             CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCC
Confidence            578999998643222222345555555554  444454443211111111110001135555557899999999852211


Q ss_pred             h---hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          237 A---FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       237 ~---l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .   ..-=+.+.++++...++++++.+||-|..+++..
T Consensus       114 ~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~  151 (301)
T 2vdj_A          114 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  151 (301)
T ss_dssp             CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             CcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHH
Confidence            1   1111567788888888999999999998774443

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=96.69  E-value=0.0013  Score=56.10  Aligned_cols=88  Identities=11%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             CCeEEEEeCC-CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~-g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      .++|+|+=+. ++.    ..+...|+..|+++.++..+..                .+++...++|.|++|||.......
T Consensus        24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~----------------~~~l~~~~~dglil~Gg~~~~~~~   83 (218)
T 2vpi_A           24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGPNSVYAE   83 (218)
T ss_dssp             TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC----------------HHHHHHHTCSEEEEEC--------
T ss_pred             CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC----------------hHHHhhcCCCEEEECCCCcccccc
Confidence            4789988554 442    3566888889988877665431                222322469999999995322211


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       ..+   .+.+...++++||.+||.|..+ |+.+
T Consensus        84 -~~~---~~~~~~~~~~~PilGIC~G~Ql-l~~~  112 (218)
T 2vpi_A           84 -DAP---WFDPAIFTIGKPVLGICYGMQM-MNKV  112 (218)
T ss_dssp             --CC---CCCGGGGTSSCCEEEETHHHHH-HHHH
T ss_pred             -cch---hHHHHHHHcCCCEEEEcHHHHH-HHHH
Confidence             111   1223445789999999999876 6653

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.67  E-value=0.003  Score=56.57  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeE--EEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANV--VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (344)
Q Consensus       158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v--~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~  235 (344)
                      .+++||+||-...-...--..+...|.....++  +++.+.....-.++....-.--.++++....+||.+||-|+....
T Consensus        45 irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~  124 (312)
T 2h2w_A           45 IRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVEL  124 (312)
T ss_dssp             CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTT
T ss_pred             CCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCC
Confidence            367899999864332222244566666666444  444443321111110000000013555555789999999985321


Q ss_pred             Hhh---hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          236 QAF---AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       236 ~~l---~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...   .-=+.+.++++...++++++.+||-|..+++..+
T Consensus       125 ~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~  164 (312)
T 2h2w_A          125 LPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYF  164 (312)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred             CCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHh
Confidence            111   1115677888888889999999999987745443

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=96.53  E-value=0.0067  Score=52.90  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=57.9

Q ss_pred             CCCeEEEEeCCCcch------hHH----HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEE
Q 019238          159 NSPQILVPIANGSEE------MEA----VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVL  228 (344)
Q Consensus       159 ~~~~v~ill~~g~~~------~e~----~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~lii  228 (344)
                      +++.|+|........      ...    ....+.+.++|....++.....             . .+.+. ..++|.|++
T Consensus         3 ~~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~-------------~-~~~~~-l~~~DGlil   67 (254)
T 3fij_A            3 LKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDP-------------S-TAVQA-ISLVDGLLL   67 (254)
T ss_dssp             CCCEEEEEC------------------CHHHHHHHHHHTCEEEEECCCCG-------------G-GHHHH-HHTCSEEEE
T ss_pred             CCCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCc-------------h-HHHHH-HhhCCEEEE
Confidence            346788876532111      111    2356677778877766654331             0 11211 146899999


Q ss_pred             cCCcc-chHh-------------hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          229 PGGLG-GAQA-------------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       229 pGG~~-~~~~-------------l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +||.. .+..             ...+...+++|+++.++++||.+||-|..+ |+.+
T Consensus        68 ~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Ql-l~~a  124 (254)
T 3fij_A           68 TGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQL-VNVA  124 (254)
T ss_dssp             CCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHH-HHHH
T ss_pred             CCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHH-HHHH
Confidence            99942 1111             112344789999999999999999999766 6654

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.41  E-value=0.0033  Score=61.23  Aligned_cols=90  Identities=13%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC-ccchH-h
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG-LGGAQ-A  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG-~~~~~-~  237 (344)
                      +++|+|+-+..   ..+....+.|++.|+++.++....                . ...  .++|.||+||| ..... .
T Consensus         4 m~~I~Iid~~~---g~~~~~~~~l~~~G~~~~vv~~~~----------------~-~~l--~~~DglILpGgG~~~~~~~   61 (555)
T 1jvn_A            4 MPVVHVIDVES---GNLQSLTNAIEHLGYEVQLVKSPK----------------D-FNI--SGTSRLILPGVGNYGHFVD   61 (555)
T ss_dssp             SCEEEEECCSC---SCCHHHHHHHHHTTCEEEEESSGG----------------G-CCS--TTCSCEEEEECSCHHHHHH
T ss_pred             CCEEEEEECCC---CCHHHHHHHHHHCCCEEEEECCcc----------------c-ccc--ccCCEEEECCCCchHhHhh
Confidence            57899997641   122356788888998877654211                0 112  57899999995 31111 1


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ...+..+.++|+++.++++||.+||.|..+ |+.+
T Consensus        62 ~l~~~~~~~~i~~~~~~g~PiLGIC~G~Ql-L~~a   95 (555)
T 1jvn_A           62 NLFNRGFEKPIREYIESGKPIMGIXVGLQA-LFAG   95 (555)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEEEHHHHT-TEEE
T ss_pred             hhhhccHHHHHHHHHHcCCcEEEEchhhhh-hhhh
Confidence            112234678999999999999999999766 7764

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.28  E-value=0.011  Score=57.50  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=57.8

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ..+|+|+=+-.-.   ...+...++..|..++++..+.                .++++...++|.||+|||....... 
T Consensus         7 ~~~IlilD~Gs~~---~~~I~r~lre~Gv~~eiv~~~~----------------~~~~i~~~~~dgIIlsGGp~s~~~~-   66 (556)
T 3uow_A            7 YDKILVLNFGSQY---FHLIVKRLNNIKIFSETKDYGV----------------ELKDIKDMNIKGVILSGGPYSVTEA-   66 (556)
T ss_dssp             CCEEEEEESSCTT---HHHHHHHHHHTTCCEEEEETTC----------------CGGGTTTSCEEEEEECCCSCCTTST-
T ss_pred             CCEEEEEECCCcc---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEECCCCCccccc-
Confidence            3677766543222   2356788889998887776543                2344433478999999996543221 


Q ss_pred             cCHHH-HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KSKKL-VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~~~l-~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..+.+ ..+++.+.++++||.+||.|..+ |+.+
T Consensus        67 ~~~~~~~~l~~~a~~~g~PvLGIC~G~Ql-La~~   99 (556)
T 3uow_A           67 GSPHLKKEVFEYFLEKKIPIFGICYGMQE-IAVQ   99 (556)
T ss_dssp             TCCCCCHHHHHHHHHTTCCEEEETHHHHH-HHHH
T ss_pred             CCcchhHHHHHHhhhcCCCEEEECHHHHH-HHHH
Confidence            11222 23444456779999999999776 7654

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=96.13  E-value=0.01  Score=52.38  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             CeEEEEeCCC--cchhHHHHHHHHHHhc----CCeEEEEEeCCCceeeeccceeeeecccc-ccccCCCccEEEEcCCcc
Q 019238          161 PQILVPIANG--SEEMEAVIIIDILRRA----KANVVVASVADKLEILASCQVKLVADMLI-DEAAKLSYDLIVLPGGLG  233 (344)
Q Consensus       161 ~~v~ill~~g--~~~~e~~~~~~~l~~~----~~~v~~~s~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~D~liipGG~~  233 (344)
                      .+|+|+.-.|  +.+ ++..+...|..+    +.++.++..+.. .+....+.      .+ +..  .++|.|++|||.+
T Consensus         9 ~~Iaivg~y~~~~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~------~~~~~~--~~~dgiil~GG~~   78 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGD-TYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNAD------EARKAL--LGCDGIFVPGGFG   78 (273)
T ss_dssp             EEEEEEECCHHHHTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTH------HHHHHH--HTCSEEEECCCCT
T ss_pred             CEEEEEeCCCcCCch-HHHHHHHHHHHHHHhcCCceEEeccChh-hcccccch------hHHHHH--hhCCEEEecCCCC
Confidence            6888884332  222 445555555444    455666655431 11110000      02 223  5789999999964


Q ss_pred             chHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       234 ~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      . .   ..+..+++++.+.++++||.+||-|..+ |+
T Consensus        79 ~-~---~~~~~~~~i~~~~~~~~PilGIC~G~Ql-l~  110 (273)
T 2w7t_A           79 N-R---GVDGKCAAAQVARMNNIPYFGVXLGMQV-AV  110 (273)
T ss_dssp             T-T---THHHHHHHHHHHHHHTCCEEEETHHHHH-HH
T ss_pred             C-c---CchhHHHHHHHHHHCCCcEEEECcCHHH-HH
Confidence            3 2   2235778899988899999999999877 54

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=96.01  E-value=0.0083  Score=54.06  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             CCeEEEEeCCCcch--------hHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238          160 SPQILVPIANGSEE--------MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (344)
Q Consensus       160 ~~~v~ill~~g~~~--------~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG  231 (344)
                      ++.|+|+...+...        .-.....+.|+++|.++.++.....            ++ .+.+. ..++|.|++|||
T Consensus        30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~------------~~-~i~~~-l~~~dglil~GG   95 (315)
T 1l9x_A           30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT------------EK-DYEIL-FKSINGILFPGG   95 (315)
T ss_dssp             CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC------------HH-HHHHH-HHHSSEEEECCC
T ss_pred             CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC------------HH-HHHHH-HhcCCEEEEeCC
Confidence            46899987643211        0112457888888988877655431            00 11111 146899999999


Q ss_pred             ccchHhh---hcCHHHHHHHHHHHhcC--CcEEEEcchhhhhhh
Q 019238          232 LGGAQAF---AKSKKLVNMLKKQKESN--RPYGAICASPALVLE  270 (344)
Q Consensus       232 ~~~~~~l---~~~~~l~~~l~~~~~~~--k~I~aic~G~~~lLa  270 (344)
                      .......   .....++++++++.+++  +||.+||-|..+ |+
T Consensus        96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Ql-l~  138 (315)
T 1l9x_A           96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEE-LS  138 (315)
T ss_dssp             CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHH-HH
T ss_pred             CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHH-HH
Confidence            5332211   01135677777776664  999999999876 54

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=95.69  E-value=0.0093  Score=53.05  Aligned_cols=101  Identities=13%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             CeEEEE-eCCCcchhHHHHHHHHHHhcCC----eEEEEEeCCCceeeeccceeeeeccc-cccc--cCCCccEEEEcCCc
Q 019238          161 PQILVP-IANGSEEMEAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADML-IDEA--AKLSYDLIVLPGGL  232 (344)
Q Consensus       161 ~~v~il-l~~g~~~~e~~~~~~~l~~~~~----~v~~~s~~~~~~v~~~~g~~v~~~~~-~~~~--~~~~~D~liipGG~  232 (344)
                      +||+|+ =+.+.... +..+.+.|+.+|+    ++.+...+.. .+...   .+..+.. ++++  ...++|.|++|||.
T Consensus        26 ~~Iavv~d~~~~~~s-~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG~  100 (289)
T 2v4u_A           26 CSIALVGKYTKLRDC-YASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGGF  100 (289)
T ss_dssp             EEEEEEESCSSCCGG-GHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSCC
T ss_pred             eEEEEEecCcCCCcc-HHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCCC
Confidence            588887 45344331 3466777777653    3444444331 11100   0111110 1110  01568999999996


Q ss_pred             cchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          233 GGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       233 ~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      +. ..   .+...++++++.+.++||.+||.|..+ |+.
T Consensus       101 ~~-~~---~~~~~~~i~~~~~~~~PilGIC~G~Q~-l~~  134 (289)
T 2v4u_A          101 GI-RG---TLGKLQAISWARTKKIPFLGVXLGMQL-AVI  134 (289)
T ss_dssp             SS-TT---HHHHHHHHHHHHHTTCCEEEETHHHHH-HHH
T ss_pred             Cc-hh---HHHHHHHHHHHHHcCCcEEEECccHHH-HHH
Confidence            53 22   256889999999999999999999876 654

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=95.26  E-value=0.056  Score=53.44  Aligned_cols=88  Identities=22%  Similarity=0.361  Sum_probs=59.2

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      .++|.|+=+  .+.. ...+...|+..|++++++..+.  +               .+.  .++|.|||+||.+.+... 
T Consensus       446 Gk~IlviD~--gdsf-~~~l~~~l~~~G~~v~Vv~~d~--~---------------~~~--~~~DgIIlsGGPg~p~d~-  502 (645)
T 3r75_A          446 GCRALIVDA--EDHF-TAMIAQQLSSLGLATEVCGVHD--A---------------VDL--ARYDVVVMGPGPGDPSDA-  502 (645)
T ss_dssp             TCEEEEEES--SCTH-HHHHHHHHHHTTCEEEEEETTC--C---------------CCG--GGCSEEEECCCSSCTTCT-
T ss_pred             CCEEEEEEC--CccH-HHHHHHHHHHCCCEEEEEECCC--c---------------ccc--cCCCEEEECCCCCChhhh-
Confidence            467665533  2222 2457788888999888776543  1               112  468999999986544331 


Q ss_pred             cC---HHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          240 KS---KKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       240 ~~---~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .+   ..+.++|++..+.++||.+||-|..+ |+.
T Consensus       503 ~~p~i~~~~~lI~~a~~~~iPiLGIClG~Ql-La~  536 (645)
T 3r75_A          503 GDPRIARLYAWLRHLIDEGKPFMAVCLSHQI-LNA  536 (645)
T ss_dssp             TSHHHHHHHHHHHHHHHHTCCEEEETHHHHH-HHH
T ss_pred             hhhhHHHHHHHHHHHHHCCCCEEEECHHHHH-HHH
Confidence            22   24678889888999999999999877 654

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=95.00  E-value=0.023  Score=54.90  Aligned_cols=87  Identities=15%  Similarity=0.063  Sum_probs=53.4

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      .+|+|+=+..-.   ...+...++..|..++++..+.                ..+++...++|.||+|||.....    
T Consensus        11 ~~I~IlD~g~~~---~~~i~r~lr~~Gv~~~i~p~~~----------------~~~~i~~~~~dgIILsGGp~sv~----   67 (527)
T 3tqi_A           11 HRILILDFGSQY---AQLIARRVREIGVYCELMPCDI----------------DEETIRDFNPHGIILSGGPETVT----   67 (527)
T ss_dssp             SEEEEEECSCTT---HHHHHHHHHHHTCEEEEEETTC----------------CSSSSTTTCCSEEEECCCCC-------
T ss_pred             CeEEEEECCCcc---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHHhcCCCEEEECCcCcccc----
Confidence            578887653222   2456788899998887775432                12333223579999999964332    


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      +.......+...+.++||.+||.|..+ |+.
T Consensus        68 ~~~~~~~~~~~~~~~~PvLGIC~G~Ql-la~   97 (527)
T 3tqi_A           68 LSHTLRAPAFIFEIGCPVLGICYGMQT-MAY   97 (527)
T ss_dssp             ------CCCSTTTSSSCEEEETHHHHH-HHH
T ss_pred             cCCChhhHHHHHhcCCCEEEEChHHHH-HHH
Confidence            112223345567789999999999776 664

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=94.96  E-value=0.018  Score=47.88  Aligned_cols=69  Identities=16%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-cccCChHHHHHHHHHhhCCCEEEEEc
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAIC   81 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (344)
                      ..+.|++.|+++.++++..                .+++.+-.   ||.+... .++.+..+.++|+++.++++++.+||
T Consensus        16 ~~~~l~~~g~~~~~~~~~~----------------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC   79 (196)
T 2nv0_A           16 HIHAIEACGAAGLVVKRPE----------------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTC   79 (196)
T ss_dssp             HHHHHHHTTCEEEEECSGG----------------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred             HHHHHHHCCCEEEEeCChH----------------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEEC
Confidence            3467888898887775420                12222211   6643332 23334556789999999999999999


Q ss_pred             hhHHHHHHHc
Q 019238           82 VFLAVALGSW   91 (344)
Q Consensus        82 ~g~~~~La~a   91 (344)
                      .|.. +|+.+
T Consensus        80 ~G~q-~l~~~   88 (196)
T 2nv0_A           80 AGLI-ILAKE   88 (196)
T ss_dssp             HHHH-HHSBC
T ss_pred             HHHH-HHHHH
Confidence            9995 88764

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=94.50  E-value=0.016  Score=49.18  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-cccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      .+.|+++|+++.+++...                .+++++-.   ||..... .+..+..+.++|+++.++++++.+||.
T Consensus        39 ~~~l~~~G~~~~~~~~~~----------------~l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~  102 (219)
T 1q7r_A           39 VRAIEACGAEAVIVKKSE----------------QLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCA  102 (219)
T ss_dssp             HHHHHHTTCEEEEECSGG----------------GGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETT
T ss_pred             HHHHHHCCCEEEEECCHH----------------HHhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECH
Confidence            466778888877766420                12222211   6643222 222244567899999999999999999


Q ss_pred             hHHHHHHHc
Q 019238           83 FLAVALGSW   91 (344)
Q Consensus        83 g~~~~La~a   91 (344)
                      |.. +|+.+
T Consensus       103 G~Q-lL~~~  110 (219)
T 1q7r_A          103 GLI-LLAKR  110 (219)
T ss_dssp             HHH-HHEEE
T ss_pred             HHH-HHHHH
Confidence            995 88865

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=94.29  E-value=0.074  Score=47.12  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=63.0

Q ss_pred             CeEEEEeCCCcchhH-HHHHHHHHHhcCC-eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc-chHh
Q 019238          161 PQILVPIANGSEEME-AVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG-GAQA  237 (344)
Q Consensus       161 ~~v~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~-~~~~  237 (344)
                      .+|+++-+-.-+..+ .....+.|++.|+ +++.+..... .     .  ...+...+.+  .+.|+|+|+||.. ....
T Consensus        57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-----~--a~~~~~~~~l--~~ad~I~v~GGnt~~l~~  126 (291)
T 3en0_A           57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-----Q--GDDSGYRLFV--EQCTGIFMTGGDQLRLCG  126 (291)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-----G--GGCHHHHHHH--HHCSEEEECCSCHHHHHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-----c--cCCHHHHHHH--hcCCEEEECCCCHHHHHH
Confidence            678877665433333 3356778888898 6666555331 0     0  0000012233  5679999999942 1223


Q ss_pred             hhcCHHHHHHHHHHHhcC-CcEEEEcchhhhhhh
Q 019238          238 FAKSKKLVNMLKKQKESN-RPYGAICASPALVLE  270 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~-k~I~aic~G~~~lLa  270 (344)
                      ......+.+.|++.+++| .++++.|+|+.+ ++
T Consensus       127 ~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i-~~  159 (291)
T 3en0_A          127 LLADTPLMDRIRQRVHNGEISLAGTSAGAAV-MG  159 (291)
T ss_dssp             HHTTCHHHHHHHHHHHTTSSEEEEETHHHHT-TS
T ss_pred             HHHhCCHHHHHHHHHHCCCeEEEEeCHHHHh-hh
Confidence            456778999999999999 899999999654 53

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=93.88  E-value=0.19  Score=41.37  Aligned_cols=90  Identities=21%  Similarity=0.240  Sum_probs=49.8

Q ss_pred             eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeecccc-ccccCCCccEEEEcCCccchHhhhc
Q 019238          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLI-DEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      ||+|+=..+.  . ...+.+.|++.|+++.++.....            .+ .+ +.....++|.+++.||.+.+..   
T Consensus         2 ~i~iiDn~~s--~-~~~i~~~l~~~G~~~~v~~~~~~------------~~-~i~~~l~~~~~~~iil~gGpg~~~~---   62 (192)
T 1i1q_B            2 DILLLDNIDS--F-TWNLADQLRTNGHNVVIYRNHIP------------AQ-TLIDRLATMKNPVLMLSPGPGVPSE---   62 (192)
T ss_dssp             EEEEEECSCS--S-HHHHHHHHHHTTCEEEEEETTSC------------SH-HHHHHHTTCSSEEEEECCCSSCGGG---
T ss_pred             cEEEEECCcc--H-HHHHHHHHHHCCCeEEEEECCCC------------HH-HHHHHhhhccCCeEEECCCCcCchh---
Confidence            5666653222  2 23457888888988877665421            00 11 1111113444677666444332   


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      .....++++ ..++++||.+||-|..+ |+.+
T Consensus        63 ~~~~~~l~~-~~~~~~PilGIC~G~Ql-l~~~   92 (192)
T 1i1q_B           63 AGCMPELLT-RLRGKLPIIGICLGHQA-IVEA   92 (192)
T ss_dssp             STTHHHHHH-HHBTTBCEEEETHHHHH-HHHH
T ss_pred             CchHHHHHH-HHhcCCCEEEECcChHH-HHHH
Confidence            223344444 45788999999999876 6653

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=93.64  E-value=0.085  Score=50.94  Aligned_cols=87  Identities=13%  Similarity=0.074  Sum_probs=54.5

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      ++|+|+=+.+-..   ..+...++..|..++++..+.                ..+++...++|.||+|||....... .
T Consensus         8 ~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~----------------~~~~i~~~~~dgiILsGGp~s~~~~-~   67 (525)
T 1gpm_A            8 HRILILDFGSQYT---QLVARRVRELGVYCELWAWDV----------------TEAQIRDFNPSGIILSGGPESTTEE-N   67 (525)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCC----------------CHHHHHHHCCSEEEECCCSSCTTST-T
T ss_pred             CEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCC----------------CHHHHhccCCCEEEECCcCcccccc-C
Confidence            6788886553222   456788899998887765432                1223311246999999996433221 1


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .+.+   .+...+.++||.+||.|..+ |+.
T Consensus        68 ~~~~---~~~~~~~g~PvLGIC~G~Ql-la~   94 (525)
T 1gpm_A           68 SPRA---PQYVFEAGVPVFGVCYGMQT-MAM   94 (525)
T ss_dssp             CCCC---CGGGGTSSSCEEEETHHHHH-HHH
T ss_pred             Ccch---HHHHHHCCCCEEEEChHHHH-HHH
Confidence            1222   24455789999999999876 654

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=93.63  E-value=0.032  Score=46.90  Aligned_cols=68  Identities=10%  Similarity=0.213  Sum_probs=43.2

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-cccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      .+.|++.|+++.+++...                .+++.+-.   ||.+... .+..++.+.++|+++.++|+++.+||.
T Consensus        36 ~~~l~~~g~~~~~~~~~~----------------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~   99 (208)
T 2iss_D           36 VEALHKLGVETLIVKLPE----------------QLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCA   99 (208)
T ss_dssp             HHHHHHTTCEEEEECSGG----------------GGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETH
T ss_pred             HHHHHHCCCEEEEeCChH----------------HHhhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECH
Confidence            456677788777765331                12222211   6643322 122234467899999999999999999


Q ss_pred             hHHHHHHHc
Q 019238           83 FLAVALGSW   91 (344)
Q Consensus        83 g~~~~La~a   91 (344)
                      |.. +|+.+
T Consensus       100 G~Q-lL~~~  107 (208)
T 2iss_D          100 GVI-LLAKR  107 (208)
T ss_dssp             HHH-HHEEE
T ss_pred             HHH-HHHHH
Confidence            995 88865

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=93.23  E-value=0.17  Score=53.71  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=34.1

Q ss_pred             ccCChHHHHHHHHHh-hCCCEEEEEchhHHHHHHHc-CCCCCC
Q 019238           57 LKESEVLESIVKKQA-SDGRLYAAICVFLAVALGSW-GLLKGL   97 (344)
Q Consensus        57 ~~~~~~~~~~l~~~~-~~g~~i~aiC~g~~~~La~a-Gll~g~   97 (344)
                      ...++.+.+.++++. ++++++.+||.|.. +|.++ |||.|.
T Consensus      1118 ~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1118 ILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGS 1159 (1303)
T ss_dssp             HHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTC
T ss_pred             HHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCC
Confidence            346788889999865 68999999999995 99999 999764

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=93.19  E-value=0.093  Score=50.03  Aligned_cols=150  Identities=12%  Similarity=0.138  Sum_probs=81.3

Q ss_pred             CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeee-----cCCCCeEEEEe-CCCcc
Q 019238           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWT-----FDNSPQILVPI-ANGSE  172 (344)
Q Consensus        99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~v~ill-~~g~~  172 (344)
                      ..++|...+..+-.+.-+.|=+    +...+.+.+.+.++...   ..+..-..+..+     .....+|+++= |-+..
T Consensus       234 ~~~VI~i~DvdtiY~vpl~L~~----qGl~~~~~~~l~l~~~~---~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~  306 (535)
T 3nva_A          234 VDHIVSSYDVETSYEVPIILES----QKLVSKILSRLKLEDRQ---VDLTDWISFVNNIKGINSKKTINIALVGKYTKLK  306 (535)
T ss_dssp             GGGEEEEECCSCGGGHHHHHHH----HTHHHHHHHHTTCCCCC---CCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSG
T ss_pred             hhceEecCCCChHHHhHHHHHH----CCcHHHHHHHcCCCCCC---CCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCc
Confidence            4688999888875444344433    34455666666554321   111111111100     11235666554 33443


Q ss_pred             hhHHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHH
Q 019238          173 EMEAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNML  248 (344)
Q Consensus       173 ~~e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l  248 (344)
                      + .+..+.+.|..++    .++.+.-.+.. .+... +.     ...+.+  .++|.|++|||.+..    .....+++|
T Consensus       307 D-aY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~~-----~~~~~L--~~~DgIIlpGG~G~~----~~~g~i~~i  372 (535)
T 3nva_A          307 D-SYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-TK-----NLNEIL--GNVNGIIVLPGFGSR----GAEGKIKAI  372 (535)
T ss_dssp             G-GGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-SS-----CCTTTT--TSCSEEEECCCCSST----THHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-cc-----chhhhc--cCCCEEEECCCCCCc----cHHHHHHHH
Confidence            3 3344566666544    45554433321 11100 00     012333  679999999997542    235678899


Q ss_pred             HHHHhcCCcEEEEcchhhhhhh
Q 019238          249 KKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       249 ~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      +.+.++++|+.+||-|..+ |+
T Consensus       373 r~a~~~~~PiLGIClG~Ql-l~  393 (535)
T 3nva_A          373 KYAREHNIPFLGICFGFQL-SI  393 (535)
T ss_dssp             HHHHHHTCCEEEETHHHHH-HH
T ss_pred             HHHHHcCCcEEEECcchhH-HH
Confidence            9999999999999999766 43

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.75  E-value=0.053  Score=44.67  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=44.5

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh-hhcccCChHHHHHHHHHhhCC-CEEEEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDG-RLYAAI   80 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g-~~i~ai   80 (344)
                      ..+.|++.|+++.+++...                .+++++-.   ||.+. ...+..+..+.++|+++.+++ +++.+|
T Consensus        17 ~~~~l~~~G~~~~~~~~~~----------------~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGi   80 (191)
T 2ywd_A           17 HKEALKRLGIEAKEVRKKE----------------HLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGT   80 (191)
T ss_dssp             HHHHHHTTTCCCEEECSGG----------------GGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHCCCEEEEeCChh----------------hhccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEE
Confidence            3566788888877765321                12222211   66322 233322356788999999999 999999


Q ss_pred             chhHHHHHHHc
Q 019238           81 CVFLAVALGSW   91 (344)
Q Consensus        81 C~g~~~~La~a   91 (344)
                      |.|.. +|+.+
T Consensus        81 C~G~Q-~l~~~   90 (191)
T 2ywd_A           81 CAGAI-WLAKE   90 (191)
T ss_dssp             THHHH-HHEEE
T ss_pred             CHHHH-HHHHH
Confidence            99995 88865

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=92.48  E-value=0.082  Score=43.98  Aligned_cols=67  Identities=21%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---C-Cchhh--hcccCChHHHHHHHHHhhCCCEEEEE
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---C-GMPGA--TNLKESEVLESIVKKQASDGRLYAAI   80 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---g-G~~~~--~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (344)
                      .+.|++.|+++.+++...                .+++.+-.   | |.+..  ..++ +..+.++|+++.++++++.+|
T Consensus        19 ~~~l~~~G~~~~~~~~~~----------------~l~~~d~lil~G~g~~~~~~~~l~-~~~~~~~i~~~~~~~~PilGI   81 (200)
T 1ka9_H           19 AKALEAAGFSVAVAQDPK----------------AHEEADLLVLPGQGHFGQVMRAFQ-ESGFVERVRRHLERGLPFLGI   81 (200)
T ss_dssp             HHHHHHTTCEEEEESSTT----------------SCSSCSEEEECCCSCHHHHHHTTS-SSCTHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHCCCeEEEecChH----------------HcccCCEEEECCCCcHHHHHHHHH-hcCHHHHHHHHHHcCCeEEEE
Confidence            577888999888875321                12222211   4 33221  2232 255789999999999999999


Q ss_pred             chhHHHHHHHc
Q 019238           81 CVFLAVALGSW   91 (344)
Q Consensus        81 C~g~~~~La~a   91 (344)
                      |.|.. +|+.+
T Consensus        82 C~G~Q-ll~~~   91 (200)
T 1ka9_H           82 CVGMQ-VLYEG   91 (200)
T ss_dssp             THHHH-TTSSE
T ss_pred             cHHHH-HHHHh
Confidence            99995 88877

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=92.18  E-value=0.54  Score=40.06  Aligned_cols=74  Identities=14%  Similarity=0.225  Sum_probs=47.0

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCC------hHHHHHHHHHhhCCCEE
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKES------EVLESIVKKQASDGRLY   77 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~------~~~~~~l~~~~~~g~~i   77 (344)
                      .+.+++.|++++++.+..++.        + |+ .+++.+..   ||.........+      ....++|++..++++++
T Consensus        18 ~~~l~~~g~~~~~~~~~~~~~--------~-p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv   87 (236)
T 3l7n_A           18 LAWAALRGHDVSMTKVYRYEK--------L-PK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKII   87 (236)
T ss_dssp             HHHHHHTTCEEEEEEGGGTCC--------C-CS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHCCCeEEEEeeeCCCC--------C-CC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCE
Confidence            455678899999988764321        1 11 12232222   553222211111      34789999999999999


Q ss_pred             EEEchhHHHHHHHc
Q 019238           78 AAICVFLAVALGSW   91 (344)
Q Consensus        78 ~aiC~g~~~~La~a   91 (344)
                      .+||-|.- +|+.+
T Consensus        88 LGIClG~Q-lL~~~  100 (236)
T 3l7n_A           88 VGVCLGAQ-LMGVA  100 (236)
T ss_dssp             EEETHHHH-HHHHH
T ss_pred             EEEchHHH-HHHHH
Confidence            99999995 89876

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=91.96  E-value=0.092  Score=52.36  Aligned_cols=89  Identities=11%  Similarity=0.109  Sum_probs=53.3

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ..+|+|+=+.+-...   .+...++..|+.+.++..+.                ..+++...++|.||++||...... .
T Consensus        29 ~~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~----------------~~e~i~~~~~dGIILsGGp~s~~~-~   88 (697)
T 2vxo_A           29 EGAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLET----------------PAFAIKEQGFRAIIISGGPNSVYA-E   88 (697)
T ss_dssp             CCCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTC----------------CHHHHHHHTCSEEEEEECC-------
T ss_pred             CCEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCC----------------CHHHHhhcCCCEEEECCCCCcccC-c
Confidence            467888866642222   25588888998887776543                123332246899999999643221 1


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..+.+   .+...+.++||.+||.|..+ |+.+
T Consensus        89 ~~~~~---~~~i~~~g~PvLGIC~G~Ql-La~~  117 (697)
T 2vxo_A           89 DAPWF---DPAIFTIGKPVLGICYGMQM-MNKV  117 (697)
T ss_dssp             -CCCC---CGGGTTSSCCEEEEEHHHHH-HHHH
T ss_pred             cchhH---HHHHHhCCCCEEEECHHHHH-HHHH
Confidence            11111   13345689999999999876 7653

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=91.59  E-value=0.19  Score=48.36  Aligned_cols=45  Identities=27%  Similarity=0.490  Sum_probs=36.5

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      .++|.|++|||.+.+.    .+..+++++++.++++|+.+||-|..+ |+
T Consensus       342 ~~~DGIilsGGpg~~~----~~g~~~~i~~a~~~~~PiLGIClG~Ql-l~  386 (545)
T 1s1m_A          342 KGLDAILVPGGFGYRG----VEGMITTARFARENNIPYLGICLGMQV-AL  386 (545)
T ss_dssp             TTCSEEEECCCCSSTT----HHHHHHHHHHHHHTTCCEEEETHHHHH-HH
T ss_pred             hcCCEEEECCCCCCcc----chhhHHHHHHHHHCCCcEEEECChHHH-HH
Confidence            5789999999975432    245778999988899999999999876 55

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=91.56  E-value=0.24  Score=40.60  Aligned_cols=68  Identities=10%  Similarity=0.118  Sum_probs=44.7

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccc--cccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSN--CRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAI   80 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~--~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (344)
                      ..+.|+++|+++.++..+.  .          .+ .+.+  .+-.   ||. ...   +.....++++++.++++++.+|
T Consensus        16 ~~~~l~~~G~~~~~~~~~~--~----------~~-~~~~~~~dglil~Gg~-~~~---~~~~~~~~i~~~~~~~~PilGI   78 (189)
T 1wl8_A           16 IWRTLRYLGVETKIIPNTT--P----------LE-EIKAMNPKGIIFSGGP-SLE---NTGNCEKVLEHYDEFNVPILGI   78 (189)
T ss_dssp             HHHHHHHTTCEEEEEETTC--C----------HH-HHHHTCCSEEEECCCS-CTT---CCTTHHHHHHTGGGTCSCEEEE
T ss_pred             HHHHHHHCCCeEEEEECCC--C----------hH-HhcccCCCEEEECCCC-Chh---hhhhHHHHHHHHhhCCCeEEEE
Confidence            4677888999988887642  0          00 1111  1111   663 322   2455688998877899999999


Q ss_pred             chhHHHHHHHc
Q 019238           81 CVFLAVALGSW   91 (344)
Q Consensus        81 C~g~~~~La~a   91 (344)
                      |.|.. +|+.+
T Consensus        79 C~G~Q-~l~~~   88 (189)
T 1wl8_A           79 CLGHQ-LIAKF   88 (189)
T ss_dssp             THHHH-HHHHH
T ss_pred             cHHHH-HHHHH
Confidence            99995 89876

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=91.30  E-value=0.32  Score=42.00  Aligned_cols=74  Identities=15%  Similarity=0.138  Sum_probs=47.1

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-cccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      .+.|++.|++++++.+..+++.         + ..+++.+-.   ||..... .........++|++..+.++++.+||.
T Consensus        21 ~~~l~~~G~~v~v~~~~~~~~~---------p-~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~   90 (250)
T 3m3p_A           21 GDFLAGEHIPFQVLRMDRSDPL---------P-AEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCL   90 (250)
T ss_dssp             HHHHHHTTCCEEEEEGGGTCCC---------C-SCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETH
T ss_pred             HHHHHHCCCeEEEEeccCCCcC---------c-CccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECH
Confidence            4557888999999887643211         1 012222211   5522211 122235678899999999999999999


Q ss_pred             hHHHHHHHc
Q 019238           83 FLAVALGSW   91 (344)
Q Consensus        83 g~~~~La~a   91 (344)
                      |.. +|+.+
T Consensus        91 G~Q-ll~~~   98 (250)
T 3m3p_A           91 GGQ-LLAKA   98 (250)
T ss_dssp             HHH-HHHHH
T ss_pred             HHH-HHHHH
Confidence            995 89887

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=91.11  E-value=0.19  Score=48.47  Aligned_cols=46  Identities=24%  Similarity=0.348  Sum_probs=36.3

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .++|.|++|||.+...    .+..++.++.+.++++|+.+||-|..+ |+.
T Consensus       354 ~~~DGIILpGGfGd~~----~~g~i~~ir~a~e~~iPiLGICLGmQl-L~~  399 (550)
T 1vco_A          354 RDVSGILVPGGFGVRG----IEGKVRAAQYARERKIPYLGICLGLQI-AVI  399 (550)
T ss_dssp             TTCSCEEECCCCSSTT----HHHHHHHHHHHHHTTCCEEEETHHHHH-HHH
T ss_pred             hcCCEEEECCCCCCcc----hhhhHHHHHHHHHCCCcEEEECcCHHH-HHH
Confidence            5789999999975432    235678889888899999999999877 543

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=89.99  E-value=0.27  Score=40.63  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=42.6

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc---cC-----CCchhhhcccCChHHHHHHHHHhhCCCEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR---DA-----CGMPGATNLKESEVLESIVKKQASDGRLY   77 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~---~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i   77 (344)
                      ..+.|++.|+++.++..+..               .++++.   ..     ||.......++.+...++++++ ++++++
T Consensus        17 ~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~Pv   80 (195)
T 1qdl_B           17 IAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPI   80 (195)
T ss_dssp             HHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCE
T ss_pred             HHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcE
Confidence            46778889999988876520               111111   11     4422222111123346888875 789999


Q ss_pred             EEEchhHHHHHHHc
Q 019238           78 AAICVFLAVALGSW   91 (344)
Q Consensus        78 ~aiC~g~~~~La~a   91 (344)
                      .+||-|.- +|+.+
T Consensus        81 LGIC~G~Q-lL~~~   93 (195)
T 1qdl_B           81 LGVCLGHQ-AIGYA   93 (195)
T ss_dssp             EEETHHHH-HHHHH
T ss_pred             EEEehHHH-HHHHH
Confidence            99999995 99987

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=89.36  E-value=0.5  Score=45.24  Aligned_cols=75  Identities=20%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (344)
Q Consensus       177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k  256 (344)
                      ..+...++..|..++++..+.                +.+++...++|.||++||......- ..+.+   .+...+.++
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~----------------~~~~i~~~~~dgiIlsGGp~s~~~~-~~~~~---~~~~~~~~~   72 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDA----------------PLEEVLKHRPQALILSGGPRSVFDP-DAPRP---DPRLFSSGL   72 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTC----------------CHHHHHTTCCSEEEECCCSSCSSCT-TCCCC---CGGGGCSSC
T ss_pred             HHHHHHHHHCCCEEEEEECCC----------------CHHHHHhcCCCEEEECCCCchhccC-CCcch---HHHHHhCCC
Confidence            557788999998877665432                1233322356999999996432211 11111   234457899


Q ss_pred             cEEEEcchhhhhhhhc
Q 019238          257 PYGAICASPALVLEPH  272 (344)
Q Consensus       257 ~I~aic~G~~~lLa~a  272 (344)
                      ||.+||-|..+ |+.+
T Consensus        73 PvLGIC~G~Ql-la~~   87 (503)
T 2ywb_A           73 PLLGICYGMQL-LAQE   87 (503)
T ss_dssp             CEEEETHHHHH-HHHT
T ss_pred             CEEEECHHHHH-HHHH
Confidence            99999999776 6653

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=88.09  E-value=0.27  Score=41.66  Aligned_cols=30  Identities=10%  Similarity=-0.031  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHhhC-CCEEEEEchhHHHHHHHc
Q 019238           61 EVLESIVKKQASD-GRLYAAICVFLAVALGSW   91 (344)
Q Consensus        61 ~~~~~~l~~~~~~-g~~i~aiC~g~~~~La~a   91 (344)
                      ..+.++|+++.++ |++|.+||.|.. +|+++
T Consensus        66 ~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           66 DTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence            5678999999999 999999999995 88875

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=83.84  E-value=1.8  Score=36.91  Aligned_cols=29  Identities=10%  Similarity=0.096  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238           62 VLESIVKKQASDGRLYAAICVFLAVALGSW   91 (344)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (344)
                      ...++|++..++++|+.+||-|.- +|+.+
T Consensus        81 ~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a  109 (239)
T 1o1y_A           81 YEFQLIEEILKKEIPFLGICLGSQ-MLAKV  109 (239)
T ss_dssp             HHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence            678999999899999999999995 99987

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=83.66  E-value=4.6  Score=34.83  Aligned_cols=85  Identities=11%  Similarity=-0.010  Sum_probs=54.7

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      .|+||+|+- ..........+.+.|+..|+++++++.+.- +            .+.++.  .+||+||++.-.  ... 
T Consensus         3 ~m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~------------~~~~~L--~~yDvIIl~d~~--~~~-   63 (259)
T 3rht_A            3 AMTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L------------DVGELL--AKQDLVILSDYP--AER-   63 (259)
T ss_dssp             ---CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B------------CSSHHH--HTCSEEEEESCC--GGG-
T ss_pred             CCceEEEEC-CCCchhHHHHHHHHHHhCCceEEEeccccc-c------------cChhHH--hcCCEEEEcCCc--ccc-
Confidence            367888773 222344666788899999999998877641 1            023444  789999998532  122 


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICA  263 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~  263 (344)
                       -++.-++.|+++.++|.-+..+..
T Consensus        64 -l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           64 -MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             -BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             -CCHHHHHHHHHHHHhCCeEEEecC
Confidence             255667777777777877777753

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=82.47  E-value=0.55  Score=39.25  Aligned_cols=31  Identities=10%  Similarity=0.180  Sum_probs=26.3

Q ss_pred             CChHHHHHHHHHhhCCCEEEEEchhHHHHHHH
Q 019238           59 ESEVLESIVKKQASDGRLYAAICVFLAVALGS   90 (344)
Q Consensus        59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~   90 (344)
                      +...+.+.|++..++|+++.++|.|+. +|++
T Consensus        98 ~~~gl~~~l~~~~~~G~p~~G~sAGa~-~l~~  128 (206)
T 3l4e_A           98 KRTGADKLILEEIAAGKLYIGESAGAV-ITSP  128 (206)
T ss_dssp             HHHTHHHHHHHHHHTTCEEEEETHHHH-TTSS
T ss_pred             HHCChHHHHHHHHHcCCeEEEECHHHH-Hhcc
Confidence            456788899999999999999999995 6654

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=80.04  E-value=3.8  Score=32.32  Aligned_cols=90  Identities=14%  Similarity=0.076  Sum_probs=50.5

Q ss_pred             CeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          161 PQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       161 ~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |||.|+-+.  |....=.-.+.+.+...|++++++....- .          +.....++  .+||.|++...... ..+
T Consensus         1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~-~----------~~~~~~~~--~~~d~ii~Gspty~-g~~   66 (161)
T 3hly_A            1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV-D----------PQELIEAV--SSARGIVLGTPPSQ-PSE   66 (161)
T ss_dssp             -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC-C----------HHHHHHHH--HHCSEEEEECCBSS-CCH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-C----------HHHHHHHH--HhCCEEEEEcCCcC-Cch
Confidence            466666655  44443344567778888888877766541 1          11112223  47899988654221 122


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASP  265 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~  265 (344)
                      +. ..+++.+....-++|+++.++++.
T Consensus        67 p~-~~fl~~l~~~~l~gk~v~~fgs~g   92 (161)
T 3hly_A           67 AV-ATALSTIFAAAHNKQAIGLFDSYG   92 (161)
T ss_dssp             HH-HHHHHHHHHHCCTTSEEEEECCCC
T ss_pred             hH-HHHHHHHHhhhhCCCEEEEEEcCC
Confidence            22 445554444334789999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	9e-44
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	3e-19
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	5e-37
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	3e-15
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	1e-32
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	9e-12
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	6e-31
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	6e-11
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	1e-27
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	5e-06
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	7e-27
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-10
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	1e-25
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	1e-05
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	5e-22
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	7e-22
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	3e-05
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	2e-20
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	2e-13

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score =  147 bits (372), Expect = 9e-44
 Identities = 82/186 (44%), Positives = 108/186 (58%), Gaps = 4/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA--DKLEILASCQVKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    L I  S  VKL+AD  + E
Sbjct: 1   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 60

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +   
Sbjct: 61  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 120

Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDGN--LVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
              T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+
Sbjct: 121 GNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEV 180

Query: 336 AKILLF 341
           A  L+ 
Sbjct: 181 ASQLVM 186

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 82.1 bits (202), Expect = 3e-19
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 35/180 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDA--------CG 50
            EAV TID+L R G  V  ASV  +  L +    GVK++ADA +    D          G
Sbjct: 15  TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 74

Query: 51  MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------ 98
           + GA   ++S +L   VK+    GR+ AAIC   A  L    +                 
Sbjct: 75  IKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP 134

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEF 145
                          K++T++GPGT ++F + +++ L G+ KA EV+   VM A   + +
Sbjct: 135 AEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYY 194

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 5e-37
 Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 1   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 60

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G 
Sbjct: 61  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 119

Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
           K T  P   +K+ N       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct: 120 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 179

Query: 336 AKILLF 341
              L+ 
Sbjct: 180 KAPLVL 185

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 3e-15
 Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 36/173 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---------CGM 51
           ME VI +DV+RR+G  V VA +  +  V     V I  DA + + +            G 
Sbjct: 15  METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 74

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------- 98
            GA NL ES  ++ I+K+Q +   L AAIC     AL +  +  G K             
Sbjct: 75  LGAQNLSESAAVKEILKEQENRKGLIAAICA-GPTALLAHEIGFGSKVTTHPLAKDKMMN 133

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
                        DG ++T+RGPGT  EF +A+VE L GK  A +V    V++
Sbjct: 134 GGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 186

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  118 bits (296), Expect = 1e-32
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 14/185 (7%)

Query: 161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
            +I + +A    + E  ++    R      +V A+  D + + +   +K+  D   D   
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATP-DGMPVTSMGGLKVTPDTSYDALD 60

Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
            +  D +V+PGGL   +    +  L  ++K+ ++ +R    ICA+ + +    G+L    
Sbjct: 61  PVDIDALVIPGGLSWEKGT--AADLGGLVKRFRDRDRLVAGICAAASALGG-TGVLNDVA 117

Query: 280 ATAFPAMCNKLSNQSEIEN------RVVVDGNLVTSRGPGTSMEFALAIVEKF--FGRNK 331
            T      +K       E       R V DG +VT+ G    + FA+ I++    FG   
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEA 176

Query: 332 ALELA 336
             EL 
Sbjct: 177 EAELQ 181

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 61.2 bits (148), Expect = 9e-12
 Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 43/170 (25%)

Query: 1   MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-------CGMP 52
            E  +     R   G ++V A+ +    V +  G+K+  D                 G  
Sbjct: 15  WEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
                  +++   +  K+  D     A     A ALG  G+L  +               
Sbjct: 74  SWEKGTAADLGGLV--KRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPA 131

Query: 99  ---------------DGKVVTTRGPGTPMEFVVALVEQL--YGKGKADEV 131
                          DG VVT  G   P+ F V +++ L  +G     E+
Sbjct: 132 YRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAEL 180

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  112 bits (282), Expect = 6e-31
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
           ++L   AN  E++E +     L+     V +AS  ++  I       +  D+  D+    
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASF-ERGTITGKHGYSVKVDLTFDKVNPE 60

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
            +D +VLPGG    +    ++K V++ +K     +P  +IC  P +++   G+L+G+K T
Sbjct: 61  EFDALVLPGGRAPER-VRLNEKAVSIARKMFSEGKPVASICHGPQILIS-AGVLRGRKGT 118

Query: 282 AFPAMCNKLSNQSE--IENRVVVDGNLVTSRGPGTSMEFALAIVEK 325
           ++P + + + N     ++  VVVDGN V+SR P     +    V+ 
Sbjct: 119 SYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKL 164

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 58.3 bits (140), Expect = 6e-11
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 34/154 (22%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-------CGMPG 53
           +E +     L+  G +V +AS E+   +   HG  +  D                 G   
Sbjct: 14  VELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRA 72

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
              ++ +E   SI +K  S+G+  A+IC      L S G+L+G K               
Sbjct: 73  PERVRLNEKAVSIARKMFSEGKPVASICH-GPQILISAGVLRGRKGTSYPGIKDDMINAG 131

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQL 122
                     DG  V++R P     ++   V+ L
Sbjct: 132 VEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  105 bits (263), Expect = 1e-27
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 39/201 (19%)

Query: 168 ANGSEEMEAVIIIDILRRAKANVVVASV------------ADKLEILASCQVKLVADMLI 215
             G    E  +   + +    +V VAS+             +K    A  +  L     +
Sbjct: 20  KTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 79

Query: 216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL-----E 270
            +     +D I LPGG G    F  ++ L  +L++  E  R   A+C  P+ ++     +
Sbjct: 80  SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKD 139

Query: 271 PHGLLKGKKATAFPAMCNKL----------------------SNQSEIENRVVVDGNLVT 308
              ++KGK  T+F     +                           +  +  V DGNL+T
Sbjct: 140 GTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLIT 199

Query: 309 SRGPGTSMEFALAIVEKFFGR 329
            + P +S   A  +V     R
Sbjct: 200 GQNPQSSRSTAEKVVAALEER 220

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 70/194 (36%)

Query: 2   EAVITIDVLRRSGADVVVASVEK------------QLRVDACHGVKIVADALVSNCRDA- 48
           E  +   V +  G DV VAS++             +    A     +   A +S      
Sbjct: 27  EFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHG 86

Query: 49  -------CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL-----GSWGLLKG 96
                   G     +  ++E L+ ++++ A DGR+ AA+C   +  +         ++KG
Sbjct: 87  FDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKG 146

Query: 97  LK---------------------------------------------DGKVVTTRGPGTP 111
                                                          DG ++T + P + 
Sbjct: 147 KTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSS 206

Query: 112 MEFVVALVEQLYGK 125
                 +V  L  +
Sbjct: 207 RSTAEKVVAALEER 220

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (254), Expect = 7e-27
 Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 6/170 (3%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEI-LASCQVKLVADMLIDEA 218
           S +I V I +  E+ E     D  R+A   V+         +     +  +  D  IDE 
Sbjct: 1   SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 60

Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
               +D ++LPGG           + V   +    S +P  AIC  P L++    +++G+
Sbjct: 61  TPAEFDALLLPGGHSP-DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISAD-VIRGR 118

Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEK 325
           K TA   +   + N       +  VV    LVTSR P     F    +  
Sbjct: 119 KLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRL 168

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 35/156 (22%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVD-ACHGVKIVADALVSNCRDA-------CGMP 52
            E     D  R++G +V+    +    V        +  D  +     A        G  
Sbjct: 15  SEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 74

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
               L+      +  +   + G+   AIC      L S  +++G K              
Sbjct: 75  SPDYLRGDNRFVTFTRDFVNSGKPVFAICH-GPQLLISADVIRGRKLTAVKPIIIDVKNA 133

Query: 99  ------------DGKVVTTRGPGTPMEFVVALVEQL 122
                         ++VT+R P     F    +  L
Sbjct: 134 GAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 169

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 99.2 bits (246), Expect = 1e-25
 Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
           ++ + IA+G + +        +   +A  +V     + ++ A+    +     ++     
Sbjct: 5   RVAIIIADGYDNVAYDAAYAAISANQAIPLVIGP-RRSKVTAANGSTVQPHHHLEGFRST 63

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
             D I +PGG   A+  +K+ + ++ +++     +  GA   +  L +     L     +
Sbjct: 64  MVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDL-VAKAIALPQVTVS 122

Query: 282 AFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVE-KFFGR 329
           +   +          +++     D   +     G   EF  AI + + + R
Sbjct: 123 SEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQHRNWDR 173

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 14/152 (9%), Positives = 30/152 (19%), Gaps = 33/152 (21%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD-------ACGMPG 53
           +        +  + A  +V    +     A          L               G   
Sbjct: 17  VAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA 76

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
           A  L ++      +++     +   A        +     L  +                
Sbjct: 77  AETLSKNGRALHWIREAFGHLKAIGATGE-AVDLVAKAIALPQVTVSSEAEVHESYGVVT 135

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVE 120
                     D   +     G   EF  A+ +
Sbjct: 136 LKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ 167

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 91.7 bits (227), Expect = 5e-22
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 28/148 (18%)

Query: 206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
             K +AD++    A   Y  I +PGG G      +S+ +   L+   +++R   ++C  P
Sbjct: 125 NPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGP 184

Query: 266 ALVLE---PHGLLKGKKATAFPAMCNKLSN-------------------------QSEIE 297
           A  L        L G    AFP   +K +                            +I 
Sbjct: 185 AAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDIT 244

Query: 298 NRVVVDGNLVTSRGPGTSMEFALAIVEK 325
            RV  D  L+T   P  +        ++
Sbjct: 245 GRVHKDRKLLTGDSPFAANALGKLAAQE 272

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 90.1 bits (223), Expect = 7e-22
 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 47/218 (21%)

Query: 163 ILVPIAN-----GSEEMEAVIIIDILRRAKANVVVASV----------ADKLEILASCQV 207
           I V ++      GSE  EAV+ +  + R+ A  V  +                +  +  V
Sbjct: 4   IGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNV 63

Query: 208 KLVADML-------IDEAAKLSYDLIVLPGGLGGAQAFAKS----------KKLVNMLKK 250
            + A  +       + +A     D +++PGG G A+  +            ++L  + + 
Sbjct: 64  LIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQA 123

Query: 251 QKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN-----QSEIENRVVVD-- 303
             ++ +P G +C +PA++ +                   L            + +VVD  
Sbjct: 124 MHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDED 183

Query: 304 GNLVTSRGPGTSMEFALAIVEKFFGRNKA----LELAK 337
             +VT+     +   A  I E   G +K     L LA+
Sbjct: 184 NKIVTTP----AYMLAQNIAEAASGIDKLVSRVLVLAE 217

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 35/131 (26%)

Query: 1   MEAVITIDVLRRSGADVVVASV-----------------EKQLRVDACHGVKIVADALVS 43
            EAV+T+  + RSGA  V  +                  E +  +     +       ++
Sbjct: 20  HEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA 79

Query: 44  NCR----DACGMPG--------------ATNLKESEVLESIVKKQASDGRLYAAICVFLA 85
                  DA  +PG               +       L+++ +     G+    +C+  A
Sbjct: 80  QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA 139

Query: 86  VALGSWGLLKG 96
           +    +     
Sbjct: 140 MLPKIFDFPLR 150

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.4 bits (213), Expect = 2e-20
 Identities = 32/210 (15%), Positives = 59/210 (28%), Gaps = 54/210 (25%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVASV---------------------ADKLEILASCQVK 208
           G   +EA+   +  R+    V   S                       D     +     
Sbjct: 24  GVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKT 83

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           L       E     Y + +   G G    + K+K L ++  +   +     A+C  PA+ 
Sbjct: 84  LAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMF 143

Query: 269 LE------PHGLLKGKKATAFPAMCNKLSNQSEI-------------------------- 296
                      L++GK  T F  +   +     I                          
Sbjct: 144 DGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGP 203

Query: 297 -ENRVVVDGNLVTSRGPGTSMEFALAIVEK 325
            ++  + DG LVT   P ++   A+  ++ 
Sbjct: 204 WDDYSITDGRLVTGVNPASAHSTAVRSIDA 233

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 4/124 (3%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
            + + + +     + + I+  L+    +  +       E+ A     L        A  L
Sbjct: 5   VVAILLNDEVRSADLLAILKALKAKGVHAKLLYS-RMGEVTADDGTVLPIAATFAGAPSL 63

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
           + D +++P   G     A +      L +  +  +P      +         +    +  
Sbjct: 64  TVDAVIVPC--GNIADIADNGDANYYLMEAYKHLKPIALAGDARKF-KATIKIADQGEEG 120

Query: 282 AFPA 285
              A
Sbjct: 121 IVEA 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.97
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.96
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.94
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	99.94
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.91
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	99.91
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.9
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.88
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.88
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.87
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.82
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.78
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.74
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.68
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.49
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.46
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.51
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.33
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.16
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	97.95
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.62
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.5
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.43
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.2
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	96.91
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	96.51
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	96.47
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	96.39
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	95.79
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	95.74
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	94.94
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	93.22
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	93.19
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	92.81
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	91.74
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	90.67
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	90.6
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	90.38
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	88.07
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	83.03
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	80.96
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	80.92

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-40  Score=276.00  Aligned_cols=182  Identities=42%  Similarity=0.601  Sum_probs=169.0

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccC-CCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK-LSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~-~~~D~liipGG~~~~~~l  238 (344)
                      +|||+|+++|||++.|+..|+++|+++|++++++|++++.++++++|+.+.+|.+++++.. .+||+|+||||...+..+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            4899999999999999999999999999999999998866899999999999999988754 589999999997667778


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC---CcCCCcEEEeCCeEeCCCcccH
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ---SEIENRVVVDGNLVTSRGPGTS  315 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~---~~~~~~~v~dg~liT~~g~~~~  315 (344)
                      .+++.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.+++.   ++.++.+|+|||+|||+|+.++
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~  159 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS  159 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred             cchHHHHHHHHHhhccccceeecccCcc-hhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHH
Confidence            8999999999999999999999999975 59999999999999999999998762   4678899999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238          316 MEFALAIVEKFFGRNKALELAKILLFT  342 (344)
Q Consensus       316 ~~~~~~li~~l~g~~~a~~~a~~l~~~  342 (344)
                      ++|+++|++++.|++.|+++++.|+++
T Consensus       160 ~d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         160 FEFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            999999999999999999999999874

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-38  Score=267.83  Aligned_cols=184  Identities=45%  Similarity=0.651  Sum_probs=171.1

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC--ceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK--LEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~--~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      ++++.|+++|||++.|+..|+++|+++|+++++++..+.  .++.+++|+.+.+|..++++++.+||+|+||||+.....
T Consensus         1 ~~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~   80 (195)
T d2ab0a1           1 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   80 (195)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcccc
Confidence            368999999999999999999999999999999997442  378899999999999999998899999999999766777


Q ss_pred             hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCC--eEeCCCcccH
Q 019238          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGN--LVTSRGPGTS  315 (344)
Q Consensus       238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~--liT~~g~~~~  315 (344)
                      +.+++.+++|||++++++|+|+++|+|++++|+++|||+||++|+||..++.+.+..+.++++|+|||  +|||+|+.++
T Consensus        81 l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~  160 (195)
T d2ab0a1          81 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  160 (195)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             ccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHH
Confidence            88999999999999999999999999976679999999999999999999999888888999999997  7999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238          316 MEFALAIVEKFFGRNKALELAKILLFTR  343 (344)
Q Consensus       316 ~~~~~~li~~l~g~~~a~~~a~~l~~~~  343 (344)
                      ++|++++|++++|++.|+++++.|+++.
T Consensus       161 ~d~al~lie~l~g~e~A~~va~~l~~~~  188 (195)
T d2ab0a1         161 IDFGLKIIDLLVGREKAHEVASQLVMAA  188 (195)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCT
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999864

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.2e-37  Score=253.01  Aligned_cols=163  Identities=27%  Similarity=0.454  Sum_probs=152.7

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~  240 (344)
                      |||+|+++|||++.|+..+++.|+++|++++++|++++ +|+++.|+.+.++.+++++.+.+||+|+||||.+ ...+..
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~-~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRA-PERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH-HHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-eEeecCCcEEeccccHHHcCcccccEEEEecccc-hhhhcc
Confidence            68999999999999999999999999999999999986 9999999999999999999888999999999964 556678


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHHH
Q 019238          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEF  318 (344)
Q Consensus       241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~~  318 (344)
                      ++.+++||+++++++++|+++|+|+. +|+++|||+||++|+||...+.+++  ..+.++++|+|||+|||+|+.++.+|
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f  157 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGPQ-ILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAW  157 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTTH-HHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHH
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccch-hhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHH
Confidence            99999999999999999999999975 5999999999999999999998876  46778899999999999999999999


Q ss_pred             HHHHHHHh
Q 019238          319 ALAIVEKF  326 (344)
Q Consensus       319 ~~~li~~l  326 (344)
                      ++++|+.|
T Consensus       158 ~~~~i~~L  165 (166)
T d1g2ia_         158 MREFVKLL  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=3e-34  Score=241.25  Aligned_cols=172  Identities=23%  Similarity=0.369  Sum_probs=150.2

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHh-cCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |+||+|+++|||.+.|+..+.+.|++ .|+++.++|++++ +|++++|+.+.||.+++++++.+||+|+||||... . .
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~-~-~   77 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSW-E-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHH-H-H
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-cEEcCCCCEEeecCchHHCChhhccEEEecCCccc-c-c
Confidence            58999999999999999999999986 7999999999986 99999999999999999998889999999999643 2 3


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCc-hhhhcc----C-CcCCCcEEEeCCeEeCCCc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAM-CNKLSN----Q-SEIENRVVVDGNLVTSRGP  312 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~-~~~~~~----~-~~~~~~~v~dg~liT~~g~  312 (344)
                      ..++.+++|||++++++++|+++|+|+++ |+++|||+|+++|+|+.. .+.++.    . +..+..+|+|||+|||+| 
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g~~~-La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G-  155 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAAASA-LGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG-  155 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHHH-HHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT-
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecchhHH-HHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCC-
Confidence            56788999999999999999999999755 999999999999998543 444433    2 334567899999999998 


Q ss_pred             ccHHHHHHHHHHHh--cCHHHHHHHH
Q 019238          313 GTSMEFALAIVEKF--FGRNKALELA  336 (344)
Q Consensus       313 ~~~~~~~~~li~~l--~g~~~a~~~a  336 (344)
                      .+++||+++++++|  +|++.++++.
T Consensus       156 ~aa~d~al~ii~~L~~~~~e~~~~~~  181 (188)
T d2fexa1         156 SAPVSFAVEILKSLGLFGPEAEAELQ  181 (188)
T ss_dssp             TCHHHHHHHHHHHTTCCSHHHHHHHG
T ss_pred             chHHHHHHHHHHHhcccCHHHHHHHH
Confidence            46899999999997  7999888874

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-34  Score=235.89  Aligned_cols=165  Identities=25%  Similarity=0.356  Sum_probs=148.5

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccc-eeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ-VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g-~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      +|||+|+++|||++.|+..+++.|+++|+++++++++++.++.++.| ..+.+|.+++++.+.+||+|+||||++ ...+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~-~~~l   79 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS-PDYL   79 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH-HHHH
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchh-hhhh
Confidence            48999999999999999999999999999999999988767887765 899999999999889999999999964 5567


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCc-EEEeCCeEeCCCcccH
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENR-VVVDGNLVTSRGPGTS  315 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~-~v~dg~liT~~g~~~~  315 (344)
                      ..++.+++||+++++++|+|+++|+|+.+ |+++|+|+||++|+||...+.+++  ..+.+++ +|+|||+|||+|+.++
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~-La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~  158 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQL-LISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDL  158 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHH-HHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchHH-HhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhH
Confidence            88999999999999999999999999865 999999999999999999888876  3444544 5567889999999999


Q ss_pred             HHHHHHHHHHh
Q 019238          316 MEFALAIVEKF  326 (344)
Q Consensus       316 ~~~~~~li~~l  326 (344)
                      .+|++++++.|
T Consensus       159 ~~fa~~~i~~L  169 (170)
T d1oi4a1         159 PAFNREALRLL  169 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.97  E-value=4.4e-32  Score=227.90  Aligned_cols=165  Identities=14%  Similarity=0.179  Sum_probs=152.6

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      ++|||+|+++|||++.|+..+++.|+++|+++++++++++ +++++.|..+.++.++++..+.+||++++|||......+
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~   80 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL   80 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-cccccccccccccccccccccccceEEEEeecccccccc
Confidence            4689999999999999999999999999999999999997 999999999999999999988899999999997666677


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHH
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSM  316 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~  316 (344)
                      ..++.+++||+++++++|+|+++|+|+. +|+++|+|+||++|+||...+++..  ....+..++.||+++|++++....
T Consensus        81 ~~~~~~~~~l~~~~~~~k~i~aic~G~~-~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~  159 (184)
T d1sy7a1          81 SKNGRALHWIREAFGHLKAIGATGEAVD-LVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLG  159 (184)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHH
T ss_pred             ccccchhHHHHHHHhcCCceEEechHHH-HHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHH
Confidence            8999999999999999999999999975 5999999999999999999988875  567778899999999999999999


Q ss_pred             HHHHHHHHH
Q 019238          317 EFALAIVEK  325 (344)
Q Consensus       317 ~~~~~li~~  325 (344)
                      +|+.+|.++
T Consensus       160 ~f~~~i~~h  168 (184)
T d1sy7a1         160 EFFYAIAQH  168 (184)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            998888765

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=2.2e-28  Score=210.14  Aligned_cols=169  Identities=26%  Similarity=0.338  Sum_probs=140.3

Q ss_pred             CCCeEEEEeCC----------CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeecc-------------ceeeeecccc
Q 019238          159 NSPQILVPIAN----------GSEEMEAVIIIDILRRAKANVVVASVADKLEILASC-------------QVKLVADMLI  215 (344)
Q Consensus       159 ~~~~v~ill~~----------g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~-------------g~~v~~~~~~  215 (344)
                      |+|||+|++.+          |++..|+..|+++|+++|++++++|++++ ++....             ...+..+..+
T Consensus         1 M~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg-~~~~d~~~~~~~~~~~~~~~~~l~~~~~l   79 (221)
T d1u9ca_           1 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   79 (221)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCC-cceeccCccccccchhHHHHHHhhCCCCh
Confidence            46899999964          89999999999999999999999999987 433211             1234555667


Q ss_pred             ccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc------CCCCCCeeeeCcCchhh
Q 019238          216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH------GLLKGKKATAFPAMCNK  289 (344)
Q Consensus       216 ~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a------GlL~g~~~T~~~~~~~~  289 (344)
                      +++++.+||+|+||||+++...+..++.+.++++++++++|+|++||+|+++ |+.+      ++++||++|+||...+.
T Consensus        80 ~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~-l~~a~~~~g~~ll~Gk~~T~~p~~~e~  158 (221)
T d1u9ca_          80 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSG-LVNATYKDGTPIVKGKTVTSFTDEEER  158 (221)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGG-GTTCBCTTSCBTTTTCEECCSCHHHHH
T ss_pred             hHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeeccccee-eeccccCCCCceeCCceeeccCCHHHh
Confidence            8888899999999999988888999999999999999999999999999977 6664      48999999999875543


Q ss_pred             ---------------hcc--CCc-----CCCcEEEeCCeEeCCCcccHHHHHHHHHHHhcCH
Q 019238          290 ---------------LSN--QSE-----IENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGR  329 (344)
Q Consensus       290 ---------------~~~--~~~-----~~~~~v~dg~liT~~g~~~~~~~~~~li~~l~g~  329 (344)
                                     +++  +.+     .+..+|+||||||++|+.++.+|++++++.|..+
T Consensus       159 ~~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         159 EVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             hcccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                           222  222     2456999999999999999999999999998654

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.8e-29  Score=208.11  Aligned_cols=136  Identities=40%  Similarity=0.558  Sum_probs=126.5

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc---cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR---DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~---~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      +|++.|+++|+++||+++++|+++++++++++|+.+.+|..++|++   ++      ||...+..+.+++.+++||++++
T Consensus        15 ~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~~~~~l~~~lr~~~   94 (186)
T d1p5fa_          15 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQE   94 (186)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccccchHHHHHHHHHhh
Confidence            4789999999999999999999976789999999999999998764   23      77667778889999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHHcCh
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                      ++|++|++||+|+ ++||++|||+||+                          |||+|||+|+++++||++++++++.|+
T Consensus        95 ~~~k~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~~d~al~li~~l~g~  173 (186)
T d1p5fa_          95 NRKGLIAAICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGK  173 (186)
T ss_dssp             HTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             ccccceeecccCc-chhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHHHHHHHHHHHHhcCH
Confidence            9999999999999 5999999999998                          999999999999999999999999999


Q ss_pred             hHHHHHhhcccc
Q 019238          126 GKADEVSGARVM  137 (344)
Q Consensus       126 ~~a~~v~~~~~~  137 (344)
                      +.|+++++.|++
T Consensus       174 ~~a~~va~~l~l  185 (186)
T d1p5fa_         174 EVAAQVKAPLVL  185 (186)
T ss_dssp             HHHHHHHGGGTC
T ss_pred             HHHHHHHHhhcc
Confidence            999999999975

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.5e-27  Score=203.92  Aligned_cols=167  Identities=19%  Similarity=0.294  Sum_probs=137.5

Q ss_pred             CCeEEEEeCC------------CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeec---------------------cc
Q 019238          160 SPQILVPIAN------------GSEEMEAVIIIDILRRAKANVVVASVADKLEILAS---------------------CQ  206 (344)
Q Consensus       160 ~~~v~ill~~------------g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~---------------------~g  206 (344)
                      +|||+|++.+            |++..|+..|++.|+++|++|+++|++|+.++--.                     .+
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHH
Confidence            5788888864            89999999999999999999999999886322100                     01


Q ss_pred             eeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-------CCCCCCe
Q 019238          207 VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLKGKK  279 (344)
Q Consensus       207 ~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-------GlL~g~~  279 (344)
                      ..+..+..++++++.+||+|++|||++.+..+.+++.+.++|+++++++|+|++||+|++. |+.+       ++++||+
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~-L~~~~~~~~g~~ll~Gk~  160 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAM-FDGLTDKKTGRPLIEGKS  160 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GTTCBCTTTCSBTTTTCE
T ss_pred             HHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHH-HHHHhhcccccccccCce
Confidence            2345566788888899999999999988888999999999999999999999999999976 5443       5999999


Q ss_pred             eeeCcCchhh-------------------hcc--CCc------CCCcEEEeCCeEeCCCcccHHHHHHHHHHHhc
Q 019238          280 ATAFPAMCNK-------------------LSN--QSE------IENRVVVDGNLVTSRGPGTSMEFALAIVEKFF  327 (344)
Q Consensus       280 ~T~~~~~~~~-------------------~~~--~~~------~~~~~v~dg~liT~~g~~~~~~~~~~li~~l~  327 (344)
                      +|+++...|.                   +++  +.+      .+..+|+||||||++++.++..++.++++.|.
T Consensus       161 vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         161 ITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             eccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            9999866543                   222  222      34679999999999999999999999999874

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.7e-27  Score=200.78  Aligned_cols=141  Identities=37%  Similarity=0.548  Sum_probs=127.2

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecC--CcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHH
Q 019238            1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQ   70 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~--~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~   70 (344)
                      +|++.|+++|+|+|++++++|+++  +.+|++++|+++.+|..++|++.  +      ||.+.+..+++++.+.+||+++
T Consensus        15 ~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~   94 (195)
T d2ab0a1          15 TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQF   94 (195)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHHH
Confidence            488999999999999999999764  24799999999999999988752  2      8877788888999999999999


Q ss_pred             hhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCC--EEcCCCCCcHHHHHHHHHHHHcCh
Q 019238           71 ASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGK--VVTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~--~iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                      +++|++|+++|+|+.++|+++|||+||+                       |||  +|||+|+++++||+++++|+++|+
T Consensus        95 ~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~~d~al~lie~l~g~  174 (195)
T d2ab0a1          95 HRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGR  174 (195)
T ss_dssp             HHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHHHHHHHHHHHHTCH
T ss_pred             hhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHHHHHHHHHHHHHcCH
Confidence            9999999999999535899999999999                       776  799999999999999999999999


Q ss_pred             hHHHHHhhcccccccC
Q 019238          126 GKADEVSGARVMRANH  141 (344)
Q Consensus       126 ~~a~~v~~~~~~~~~~  141 (344)
                      +.|+++++.|++++..
T Consensus       175 e~A~~va~~l~~~~~~  190 (195)
T d2ab0a1         175 EKAHEVASQLVMAAGI  190 (195)
T ss_dssp             HHHHHHHTTTTCCTTS
T ss_pred             HHHHHHHHHhcCCcch
Confidence            9999999999998754

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.2e-24  Score=190.71  Aligned_cols=169  Identities=22%  Similarity=0.316  Sum_probs=132.4

Q ss_pred             CCCeEEEEeC--------------CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee-cccee---------------
Q 019238          159 NSPQILVPIA--------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-SCQVK---------------  208 (344)
Q Consensus       159 ~~~~v~ill~--------------~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~-~~g~~---------------  208 (344)
                      .++||+|++.              .|++..|+..|+..|+++|++|+++|++|+ ++.- ...+.               
T Consensus        43 g~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~-~~~~D~~s~~~~d~~~~~~~~~~~~  121 (279)
T d1n57a_          43 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKS  121 (279)
T ss_dssp             SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHH
T ss_pred             CCceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCCcCccccccccHHHHHHHHhHHH
Confidence            3579999887              589999999999999999999999999997 4431 11110               


Q ss_pred             -eeeccccccc-----cCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc---CCCCCCe
Q 019238          209 -LVADMLIDEA-----AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH---GLLKGKK  279 (344)
Q Consensus       209 -v~~~~~~~~~-----~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a---GlL~g~~  279 (344)
                       +.....++++     ...+||+|++|||++.+..+.+++.+.++|+++++++|+|++||||++.||+..   ++++||+
T Consensus       122 ~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~  201 (279)
T d1n57a_         122 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  201 (279)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             HHhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeE
Confidence             1111122222     346899999999998888999999999999999999999999999998844432   5999999


Q ss_pred             eeeCcCchhh-------------------hcc--CCcC----CCcEEEeCCeEeCCCcccHHHHHHHHHHHhcC
Q 019238          280 ATAFPAMCNK-------------------LSN--QSEI----ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG  328 (344)
Q Consensus       280 ~T~~~~~~~~-------------------~~~--~~~~----~~~~v~dg~liT~~g~~~~~~~~~~li~~l~g  328 (344)
                      +|+++...|.                   +++  +.+.    +..+|+||||||++++.++..++..+++.|..
T Consensus       202 vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         202 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             EeecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence            9999876543                   222  1222    34599999999999999999999999998863

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=9.1e-25  Score=179.70  Aligned_cols=119  Identities=28%  Similarity=0.390  Sum_probs=109.0

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS   72 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (344)
                      +|++.|+++|+++|++++++|+++ ++|++++|+.+.+|..+++++  ++      || .+...+..++++.+||+++++
T Consensus        14 ~E~~~p~~~l~~ag~~v~~vs~~~-~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg-~~~~~~~~~~~~~~~l~~~~~   91 (166)
T d1g2ia_          14 VELIYPYHRLKEEGHEVYIASFER-GTITGKHGYSVKVDLTFDKVNPEEFDALVLPGG-RAPERVRLNEKAVSIARKMFS   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSS-EEEECTTSCEEEECEEGGGCCGGGCSEEEECCB-SHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCC-ceEeecCCcEEeccccHHHcCcccccEEEEecc-cchhhhccChHHHHHHHHHHh
Confidence            378999999999999999999995 699999999999999999875  33      66 456667789999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      ++++|++||+|+ ++|+++|||+||+                         |||+|||+|+.++.+|++++++++
T Consensus        92 ~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_          92 EGKPVASICHGP-QILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             TTCCEEEETTTT-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHHHHH
T ss_pred             cCCeeeeccccc-hhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHHHHHHHHhh
Confidence            999999999999 5999999999998                         899999999999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.90  E-value=1.4e-23  Score=175.65  Aligned_cols=126  Identities=28%  Similarity=0.457  Sum_probs=110.1

Q ss_pred             CeeehhHHHHHh-CCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHh
Q 019238            1 MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         1 ~E~~~~~~~l~~-~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      +|+..+.+.|++ .|++++++|+++ .+|++++|+.+.||..+++++.  +      ||.+...  ..++++++|||+++
T Consensus        15 ~E~~~~~~~l~~~~g~~v~~vs~~~-~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~--~~~~~l~~~lr~~~   91 (188)
T d2fexa1          15 WEPALLAAAARSYLGVEIVHATPDG-MPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK--GTAADLGGLVKRFR   91 (188)
T ss_dssp             TSSHHHHHHHHHHSCCEEEEEETTS-SCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH--TCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCcEEEEEeCCC-CcEEcCCCCEEeecCchHHCChhhccEEEecCCccccc--cccHHHHHHHHHHH
Confidence            478888999976 799999999996 6999999999999999998752  3      7754333  46788999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++++|++||+|+ ++||++|||+|++                             |||+|||+| ++++||++++++++
T Consensus        92 ~~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G-~aa~d~al~ii~~L  169 (188)
T d2fexa1          92 DRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG-SAPVSFAVEILKSL  169 (188)
T ss_dssp             HTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT-TCHHHHHHHHHHHT
T ss_pred             HhCCEEEEecchh-HHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCC-chHHHHHHHHHHHh
Confidence            9999999999999 5999999999998                             899999998 46899999999997


Q ss_pred             --cChhHHHHH
Q 019238          123 --YGKGKADEV  131 (344)
Q Consensus       123 --~g~~~a~~v  131 (344)
                        +|++.++++
T Consensus       170 ~~~~~e~~~~~  180 (188)
T d2fexa1         170 GLFGPEAEAEL  180 (188)
T ss_dssp             TCCSHHHHHHH
T ss_pred             cccCHHHHHHH
Confidence              588877776

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.88  E-value=1.8e-22  Score=163.89  Aligned_cols=117  Identities=11%  Similarity=0.108  Sum_probs=109.0

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      .+|||+||++|||+..|+..+++.|+++|+++.+++++.+ ++.+.+|..+.++.++++.++.+||+|+||||..  ..+
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~--~~l   78 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNI--ADI   78 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCSCT--HHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-cccccceeEEeeeeeeccCCcccCCEEEeeCCch--HHH
Confidence            3689999999999999999999999999999999999997 9999999999999999999888999999999953  457


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCe
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK  279 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~  279 (344)
                      ..++.+++||+++++++|+|+++|+|+.+ |+.+|+++++.
T Consensus        79 ~~~~~~~~~i~e~~~~~K~I~aic~g~~~-La~agl~~~~~  118 (156)
T d1p80a1          79 ADNGDANYYLMEAYKHLKPIALAGDARKF-KATIKIADQGE  118 (156)
T ss_dssp             HTCHHHHHHHHHHHHTTCCEEEEGGGGGG-GGTTTCCSSCC
T ss_pred             hcchHHHHHHHHHHHcCCeEEEECchHHH-HHHcCCCcCCC
Confidence            89999999999999999999999999865 99999998764

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.5e-23  Score=176.97  Aligned_cols=149  Identities=21%  Similarity=0.326  Sum_probs=114.4

Q ss_pred             CCeEEEEeC-----CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeec-----------cc-------eeeeeccccc
Q 019238          160 SPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----------CQ-------VKLVADMLID  216 (344)
Q Consensus       160 ~~~v~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~-----------~g-------~~v~~~~~~~  216 (344)
                      |+||+|++.     ||+++.|+..+++.|+++|++++++|++++ .+...           .+       +....+.+++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            689999974     899999999999999999999999999875 32211           11       1122334688


Q ss_pred             cccCCCccEEEEcCCccchHhhh----------cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeee-CcC
Q 019238          217 EAAKLSYDLIVLPGGLGGAQAFA----------KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA-FPA  285 (344)
Q Consensus       217 ~~~~~~~D~liipGG~~~~~~l~----------~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~-~~~  285 (344)
                      ++++.+||+|++|||++....+.          .++.+.+++++|++++|+|++||+|+++ |++++.+.+++.++ |+.
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~-l~~~~~~~~~~~~~~~~~  158 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAM-LPKIFDFPLRLTIGTDID  158 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGG-HHHHCSSCCEECCCSCHH
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHH-HHHHhccCCCeeeccChh
Confidence            88889999999999987665543          3689999999999999999999999976 99998888775554 566


Q ss_pred             chhhhcc--CCcCC---CcEEEe--CCeEeCC
Q 019238          286 MCNKLSN--QSEIE---NRVVVD--GNLVTSR  310 (344)
Q Consensus       286 ~~~~~~~--~~~~~---~~~v~d--g~liT~~  310 (344)
                      ..+.+++  +.+.+   ..+++|  |||||+.
T Consensus       159 ~~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         159 TAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             hHHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            6777765  33322   234444  9999974

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.9e-22  Score=164.26  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=108.1

Q ss_pred             CeeehhHHHHHhCCCeEEEEEecCCcceecCCC-CEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHG-VKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (344)
Q Consensus         1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g-~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (344)
                      .|++.|+++|+++|++++++|++++++++++.| +++.+|..++++.  ++      || .+...+..|+++++||++++
T Consensus        15 ~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG-~~~~~l~~~~~~~~~i~~~~   93 (170)
T d1oi4a1          15 SEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG-HSPDYLRGDNRFVTFTRDFV   93 (170)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB-THHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccc-hhhhhhccChHHHHHHHHHh
Confidence            378899999999999999999987778888765 8999999999875  22      66 45566888999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238           72 SDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (344)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~  122 (344)
                      +++++|++||+|+ ++|+++|+|+||+                          |||+|||+|+.++.+|++++++.+
T Consensus        94 ~~~k~i~aiC~g~-~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~~~fa~~~i~~L  169 (170)
T d1oi4a1          94 NSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL  169 (170)
T ss_dssp             HTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             hcCCeeeecccch-HHHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhHHHHHHHHHHHh
Confidence            9999999999999 5999999999998                          688999999999999999999986

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.82  E-value=1.1e-20  Score=157.71  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=106.5

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..|+++|+++|++++++|+++ .++++++|..+.+|..+++.+.  +      ||......+..++.+.+||++++++
T Consensus        18 e~~~~~~~l~~ag~~v~ivs~~~-~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~~~~~~~l~~~~~~   96 (184)
T d1sy7a1          18 AYDAAYAAISANQAIPLVIGPRR-SKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGH   96 (184)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCS-SCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEEEecC-CcccccccccccccccccccccccceEEEEeeccccccccccccchhHHHHHHHhc
Confidence            77899999999999999999996 5999999999999999988753  2      7756777788999999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHH
Q 019238           74 GRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQ  121 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~  121 (344)
                      +|+|++||+|+ ++|+++|+|+||+                         |||++|++++.+..+|+..+.+.
T Consensus        97 ~k~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~~f~~~i~~h  168 (184)
T d1sy7a1          97 LKAIGATGEAV-DLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQH  168 (184)
T ss_dssp             TCEEEEETTHH-HHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHTC
T ss_pred             CCceEEechHH-HHHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHHHHHHHHHHh
Confidence            99999999999 5999999999998                         99999999999999998777554

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=6.4e-20  Score=156.90  Aligned_cols=123  Identities=24%  Similarity=0.287  Sum_probs=100.5

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCC------------CEEEcCccccccc--cC------CCchhhhcccCCh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHG------------VKIVADALVSNCR--DA------CGMPGATNLKESE   61 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g------------~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~   61 (344)
                      |++.|+++|+++||+|+++|++++.+......            ..+..+..+++++  +|      ||++++.++++++
T Consensus        27 E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~  106 (221)
T d1u9ca_          27 EFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNE  106 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCH
T ss_pred             HHHHHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhH
Confidence            88999999999999999999997533221111            1223344455554  23      8888889999999


Q ss_pred             HHHHHHHHHhhCCCEEEEEchhHHHHHHHcC------CCCCCC-------------------------------------
Q 019238           62 VLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK-------------------------------------   98 (344)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~-------------------------------------   98 (344)
                      .+.++++++++++|++++|||||+ +|+.++      |++||+                                     
T Consensus       107 ~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~~~~~~~~p~~~~~~l~~~Ga~y~~~~  185 (221)
T d1u9ca_         107 TLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGG  185 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCS
T ss_pred             HHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeeccCCHHHhhcccccchhhhHHHHHHHCCCEEeecC
Confidence            999999999999999999999996 999865      778876                                     


Q ss_pred             --------CCCEEcCCCCCcHHHHHHHHHHHHcCh
Q 019238           99 --------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (344)
Q Consensus        99 --------dg~~iT~~g~~~~~~~~~~lv~~~~g~  125 (344)
                              |||+||++||.++.+|++.+++++..+
T Consensus       186 ~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         186 KWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             TTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                    799999999999999999999998654

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.5e-19  Score=153.25  Aligned_cols=121  Identities=20%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCccee---cCC------------------CCEEEcCcccccccc--C------CCch
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVD---ACH------------------GVKIVADALVSNCRD--A------CGMP   52 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~---~~~------------------g~~~~~d~~~~~~~~--~------gG~~   52 (344)
                      |++.|+++|+++||+|+++|++|+.++-   ...                  +-.+..+..+++++.  |      ||++
T Consensus        29 E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ydav~ipGG~g  108 (236)
T d1qvwa_          29 EALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHG  108 (236)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGCSEEEECCSTT
T ss_pred             HHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHHHHHhcccChhhCCHhHCCEEEEeCCcc
Confidence            8899999999999999999998753221   000                  112344555666642  2      8888


Q ss_pred             hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc-------CCCCCCC---------------------------
Q 019238           53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK---------------------------   98 (344)
Q Consensus        53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~---------------------------   98 (344)
                      ++.++++++.+.+++++++++||+|++|||||. +|+.+       +|++||+                           
T Consensus       109 ~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~~~~~~g~~ll~Gk~vT~f~~~ee~~~~~~~~~~~~~~~~le  187 (236)
T d1qvwa_         109 TLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVE  187 (236)
T ss_dssp             HHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTCSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHH
T ss_pred             chhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHHhhcccccccccCceeccCCcHHHhhccccccccCCCcccHH
Confidence            899999999999999999999999999999995 88876       5888887                           


Q ss_pred             -----------------------CCCEEcCCCCCcHHHHHHHHHHHHc
Q 019238           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLY  123 (344)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~~  123 (344)
                                             |||+||+++|.|+..++..+|+++.
T Consensus       188 ~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         188 DVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             HHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             HHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence                                   8999999999999999999999874

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=9.5e-18  Score=146.47  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=96.9

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCE----------------EEcCcccccc-------ccC------CCch
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVK----------------IVADALVSNC-------RDA------CGMP   52 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~----------------~~~d~~~~~~-------~~~------gG~~   52 (344)
                      |++.|++.|+++||+|+++|++|+.+..-...+.                +.....++++       .+|      ||++
T Consensus        73 E~~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG  152 (279)
T d1n57a_          73 ETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHG  152 (279)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGG
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHHhCchhhhhhhhcccccccccEEEecCCcc
Confidence            8899999999999999999999753321111110                0001111222       122      9988


Q ss_pred             hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc----CCCCCCC------------------------------
Q 019238           53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW----GLLKGLK------------------------------   98 (344)
Q Consensus        53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a----Gll~g~~------------------------------   98 (344)
                      ++.++.+|+.+.++|++++++||+|++|||||+ +|..+    ++++||+                              
T Consensus       153 ~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa-~Ll~a~~g~~l~~Gk~vT~f~~~eE~~~~~~~~~p~~~~~~le~~L  231 (279)
T d1n57a_         153 ALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEEL  231 (279)
T ss_dssp             GGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHHcCCcceeccccch-hhhhcccCCcccCCeEEeecCCHHHhccchhccCcccccccHHHHH
Confidence            899999999999999999999999999999996 88877    6889988                              


Q ss_pred             ------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238           99 ------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (344)
Q Consensus        99 ------------------dg~~iT~~g~~~~~~~~~~lv~~~~g  124 (344)
                                        |||+||+++|.++..++..+++++..
T Consensus       232 ~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         232 KKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             HHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence                              89999999999999999999998864

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.8e-15  Score=125.94  Aligned_cols=95  Identities=23%  Similarity=0.253  Sum_probs=72.9

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCC------------------CCEEEcCccccccc--cC------CCchhhh
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACH------------------GVKIVADALVSNCR--DA------CGMPGAT   55 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~------------------g~~~~~d~~~~~~~--~~------gG~~~~~   55 (344)
                      |++.|++.|+|+|++++++|++++ .+....                  ++....+..+++++  +|      ||+++..
T Consensus        21 E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~~   99 (217)
T d1vhqa_          21 EAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAK   99 (217)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccHH
Confidence            789999999999999999999964 322211                  11122334566664  22      8887776


Q ss_pred             ccc----------CChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 019238           56 NLK----------ESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK   98 (344)
Q Consensus        56 ~~~----------~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~   98 (344)
                      ++.          .++.+++++++|+++||+|++||+||+ +|++++.+++++
T Consensus       100 ~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~~~~  151 (217)
T d1vhqa_         100 NLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFPLRL  151 (217)
T ss_dssp             TSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSCCEE
T ss_pred             HHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccCCCe
Confidence            664          468999999999999999999999996 999999888875

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.46  E-value=4e-14  Score=113.95  Aligned_cols=103  Identities=10%  Similarity=0.079  Sum_probs=88.4

Q ss_pred             eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD   73 (344)
Q Consensus         2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (344)
                      |+..|+++|+++|+++.+++++. .++++++|..+.+|.++++.+.  +      ||.  ...++.++.+++||++++++
T Consensus        18 e~~~~~~~l~~ag~~v~~v~~~~-~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~--~~~l~~~~~~~~~i~e~~~~   94 (156)
T d1p80a1          18 DLLAILKALKAKGVHAKLLYSRM-GEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN--IADIADNGDANYYLMEAYKH   94 (156)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESSS-SEEECTTSCEEECCEETTTSCGGGCSEEEECCSC--THHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEEeccc-ccccccceeEEeeeeeeccCCcccCCEEEeeCCc--hHHHhcchHHHHHHHHHHHc
Confidence            67899999999999999999996 5899999999999999988762  3      663  33578899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCCCCC
Q 019238           74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPG  109 (344)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~  109 (344)
                      +|+|+++|+|+ ++|+.+|+++++.. .+++..+..
T Consensus        95 ~K~I~aic~g~-~~La~agl~~~~~~-gv~~~~~~~  128 (156)
T d1p80a1          95 LKPIALAGDAR-KFKATIKIADQGEE-GIVEADSAD  128 (156)
T ss_dssp             TCCEEEEGGGG-GGGGTTTCCSSCCT-TEEEESSCC
T ss_pred             CCeEEEECchH-HHHHHcCCCcCCCC-eEEEcCCcc
Confidence            99999999999 59999999988754 466665554

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.51  E-value=9.9e-08  Score=79.03  Aligned_cols=88  Identities=22%  Similarity=0.275  Sum_probs=65.4

Q ss_pred             CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-H
Q 019238          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-Q  236 (344)
Q Consensus       158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~  236 (344)
                      .++|||+|+.++|.    +......|++.|+++.++..                   .+++  .++|.||+|||.... .
T Consensus         4 ~~~mkIgii~~~Gn----~~s~~~al~~~G~~~~~v~~-------------------~~~l--~~~D~lIlPGG~~~~~~   58 (202)
T d1q7ra_           4 QSNMKIGVLGLQGA----VREHVRAIEACGAEAVIVKK-------------------SEQL--EGLDGLVLPGGESTTMR   58 (202)
T ss_dssp             CCCCEEEEESCGGG----CHHHHHHHHHTTCEEEEECS-------------------GGGG--TTCSEEEECCCCHHHHH
T ss_pred             ccCCEEEEEECCCC----HHHHHHHHHHCCCcEEEECC-------------------HHHH--hcCCEEEECCCCcHHHH
Confidence            46799999999863    34456889999998877631                   1234  679999999985322 1


Q ss_pred             hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .......+.++|+++.+++++|.+||.|..+ |+.
T Consensus        59 ~~l~~~~l~~~I~~~~~~gkPiLGIClG~Ql-l~~   92 (202)
T d1q7ra_          59 RLIDRYGLMEPLKQFAAAGKPMFGTCAGLIL-LAK   92 (202)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCEEEETTHHHH-HEE
T ss_pred             HHhhhhHHHHHHhhhccccceeeeeehhhHH-hhh
Confidence            2234456789999999999999999999765 764

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=3.9e-07  Score=74.84  Aligned_cols=86  Identities=20%  Similarity=0.247  Sum_probs=63.6

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAF  238 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l  238 (344)
                      |+||+|+-++|.. .|   ....|+++|+++.++..                   .+++  .++|.||+|||.... ...
T Consensus         1 m~~igv~~~~G~~-~~---~~~al~~~G~~~~~i~~-------------------~~~l--~~~D~lIlPGG~~~~~~~~   55 (195)
T d2nv0a1           1 MLTIGVLGLQGAV-RE---HIHAIEACGAAGLVVKR-------------------PEQL--NEVDGLILPGGESTTMRRL   55 (195)
T ss_dssp             CCEEEEECSSSCC-HH---HHHHHHHTTCEEEEECS-------------------GGGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEecCChH-HH---HHHHHHHCCCcEEEECC-------------------HHHH--hhCCEEEECCCCccHHHHH
Confidence            6899999998744 23   36789999998876632                   1233  578999999985322 223


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .....+.++|+++.+++++|.+||.|..+ |++
T Consensus        56 ~~~~~~~~~I~~~~~~g~pilGIC~G~Ql-l~~   87 (195)
T d2nv0a1          56 IDTYQFMEPLREFAAQGKPMFGTCAGLII-LAK   87 (195)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHHH-HSB
T ss_pred             hhhchhcchhhhhhhhcceeeeccccHHH-HHh
Confidence            34446788999999999999999999765 765

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.16  E-value=2.4e-06  Score=72.89  Aligned_cols=100  Identities=14%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      .++||+||.+||. ++.|..   ..|+.+|++++.+..+.  -             ........+||+|++|||+.--+.
T Consensus         5 ~kpkvaVl~~pGtNcd~e~~---~Af~~aG~~~~~v~~~d--l-------------~~~~~~L~~~~~lvipGGFSygD~   66 (262)
T d1t3ta2           5 ARPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSD--L-------------LGGRIGLGNFHALVACGGFSYGDV   66 (262)
T ss_dssp             CCCEEEEEECTTBCCHHHHH---HHHHHTTCEEEEEEHHH--H-------------HHTSCCGGGCSEEEECCBCGGGGT
T ss_pred             CCCeEEEEeCCCCCcHHHHH---HHHHHcCCceEEEEeee--c-------------ccCcccccccceEEEecccccccc
Confidence            4689999999997 666654   57788999998876642  0             001112378999999999743332


Q ss_pred             h----------hcCHHHHHHHHHHHh-cCCcEEEEcchhhhhhhhcC-CCCC
Q 019238          238 F----------AKSKKLVNMLKKQKE-SNRPYGAICASPALVLEPHG-LLKG  277 (344)
Q Consensus       238 l----------~~~~~l~~~l~~~~~-~~k~I~aic~G~~~lLa~aG-lL~g  277 (344)
                      +          ..+..+.+.+.+|+. .+++|.+||+|-.+ |.+.| |+.|
T Consensus        67 l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQi-L~elg~l~pg  117 (262)
T d1t3ta2          67 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQM-MSNLRELIPG  117 (262)
T ss_dssp             TSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHH-HHTTGGGSTT
T ss_pred             ccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHH-HHHhcccCCC
Confidence            2          334556666677765 68999999999776 88875 5554

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=9.3e-06  Score=68.12  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=66.9

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      +.|||+|+-...+.  +...+.+.|+..|++++++-...+..             ..++.  .+||.+||+||..+...-
T Consensus         2 ~~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~~~-------------~p~~l--~~~d~iii~Ggp~~~~d~   64 (230)
T d1o1ya_           2 HHVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKGEK-------------LERPL--EEYSLVVLLGGYMGAYEE   64 (230)
T ss_dssp             CCCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGTCC-------------CSSCG--GGCSEEEECCCSCCTTCT
T ss_pred             CceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCCCc-------------CCcch--hhCCEEEEcCCCcccccc
Confidence            45888777655443  45567899999999998876544200             11223  579999999985433221


Q ss_pred             ---hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 ---AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ---~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                         .-.....++|++..++++||.+||-|..+ |+.+
T Consensus        65 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Ql-la~a  100 (230)
T d1o1ya_          65 EKYPFLKYEFQLIEEILKKEIPFLGICLGSQM-LAKV  100 (230)
T ss_dssp             TTCTHHHHHHHHHHHHHHHTCCEEEETHHHHH-HHHH
T ss_pred             hhhhhhHHHHHHHHHHHHhcceEEEeecCHHH-HHHH
Confidence               11345678999999999999999999877 6654

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=9.8e-05  Score=60.13  Aligned_cols=49  Identities=31%  Similarity=0.614  Sum_probs=36.8

Q ss_pred             CCccEEEEcC-Cc-c-chHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          221 LSYDLIVLPG-GL-G-GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       221 ~~~D~liipG-G~-~-~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      ..+|.||+|| |. . .+..+ ++..+.+.|+++.++++||.+||.|..+ |+.
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~Ql-L~~   92 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQL-LFE   92 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHT-TEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeE-Eee
Confidence            4689999999 53 1 12233 3346788999999999999999999765 764

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.43  E-value=0.00019  Score=59.03  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCe-EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH--
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--  236 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~-v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~--  236 (344)
                      .+|||||.++|... |   ....|++.|+. +++                 ....+.+++  .++|.||||||.....  
T Consensus         2 ~ikIGvl~l~G~~~-~---~~~al~~lg~~~~~v-----------------~~~~~~~~l--~~~D~lIlPGgg~~~~~~   58 (218)
T d2abwa1           2 EITIGVLSLQGDFE-P---HINHFIKLQIPSLNI-----------------IQVRNVHDL--GLCDGLVIPGGESTTVRR   58 (218)
T ss_dssp             CEEEEEECTTSCCH-H---HHHHHHTTCCTTEEE-----------------EEECSHHHH--HTCSEEEECCSCHHHHHH
T ss_pred             CCEEEEEeCCCcHH-H---HHHHHHHcCCCceEE-----------------EEeCCHHHH--hhCCEEEEcCCCccHHHH
Confidence            47999999876653 2   34667877742 221                 111233555  6789999999732111  


Q ss_pred             -hhhcCHHHHHHHHHH-HhcCCcEEEEcchhhhhhhhc
Q 019238          237 -AFAKSKKLVNMLKKQ-KESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       237 -~l~~~~~l~~~l~~~-~~~~k~I~aic~G~~~lLa~a  272 (344)
                       .+.....+.+.|.++ ...++||.+||.|..+ |+..
T Consensus        59 ~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~Ql-L~~~   95 (218)
T d2abwa1          59 CCAYENDTLYNALVHFIHVLKKPIWGTCAGCIL-LSKN   95 (218)
T ss_dssp             HTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHH-TEEE
T ss_pred             HHHHHhccchHHHHHHHHHcCCeEEEecHHHHH-HHHh
Confidence             122233344445444 4589999999999765 7653

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.20  E-value=0.00035  Score=56.57  Aligned_cols=88  Identities=20%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             CCeEEEEeCC-CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          160 SPQILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       160 ~~~v~ill~~-g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      |+||+|+=+- +|.    ......|+..|++++++..+.                ...+.  .+||.||++||...... 
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d~----------------~~~~~--~~~dgiIl~Gg~~~~~~-   57 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPNDI----------------DSSEL--DGLDGLVLSGGAPNIDE-   57 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETTS----------------CGGGG--TTCSEEEEEEECSCGGG-
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCCC----------------CHHHH--hcCCcEEEecccccccc-
Confidence            5777766542 232    244677888887776654321                23444  67999999998543322 


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                       ....+..+++...++++||.+||-|..+ |+.+
T Consensus        58 -~~~~~~~l~~~~~~~~~PilGIC~G~Ql-l~~~   89 (196)
T d2a9va1          58 -ELDKLGSVGKYIDDHNYPILGICVGAQF-IALH   89 (196)
T ss_dssp             -TGGGHHHHHHHHHHCCSCEEEETHHHHH-HHHH
T ss_pred             -ccchhhhHHHHHhhcCceEEEeehhhhh-hhhc
Confidence             2233455556666789999999999876 7664

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0021  Score=53.11  Aligned_cols=88  Identities=19%  Similarity=0.272  Sum_probs=64.1

Q ss_pred             CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (344)
Q Consensus       160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~  239 (344)
                      ..||+|+=+ |....    ....|++.|+.++++..+.                +.+++...++|.|++.+|.+.+   .
T Consensus        39 ~~~i~~~D~-G~k~~----ilr~l~~~~~~~~v~p~~~----------------~~~~i~~~~pdgivlS~GPg~P---~   94 (228)
T d1a9xb2          39 PFHVVAYDF-GAKRN----ILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDP---A   94 (228)
T ss_dssp             CEEEEEEES-SCCHH----HHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCS---T
T ss_pred             cceEEEEeC-CCcHH----hHhHHHhcCceEEEcCCCC----------------CHHHHHhcCCCEEEEeCCCCcc---c
Confidence            345655533 44432    3488999999998877764                3566665689999999996544   2


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      +.....+.++++.+.+.||.+||-|..+ |+.+
T Consensus        95 ~~~~~~~~~~~~~~~~iPILGIClG~Ql-ia~~  126 (228)
T d1a9xb2          95 PCDYAITAIQKFLETDIPVFGICLGHQL-LALA  126 (228)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHHH-HHHH
T ss_pred             cchhHHHHHHHHHhCCCCEEEEEcChHH-HHHH
Confidence            4556788899988899999999999877 6643

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.51  E-value=0.0016  Score=52.36  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~  257 (344)
                      .+++.|++.|++++++..+..               +++++...++|.|++.||...+... .+.....++.+...+++|
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~---------------~~~~i~~~~~~gvilsgGp~~~~~~-~~~~~~~~i~~~~~~~~P   79 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTP   79 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSH-HHHTTHHHHHHHHTTTSC
T ss_pred             HHHHHHHhCCCeEEEEeCCCC---------------CHHHHHhhCCCccccCCCCCccccc-cccccchhhhhhhcCCCC
Confidence            346789999999888765431               2334433468999999986544332 222344566777888999


Q ss_pred             EEEEcchhhhhhhhc
Q 019238          258 YGAICASPALVLEPH  272 (344)
Q Consensus       258 I~aic~G~~~lLa~a  272 (344)
                      |.+||-|..+ |+.+
T Consensus        80 iLGIClG~Ql-l~~~   93 (195)
T d1qdlb_          80 ILGVCLGHQA-IGYA   93 (195)
T ss_dssp             EEEETHHHHH-HHHH
T ss_pred             EEEeehhhhh-hhhc
Confidence            9999999876 6643

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.47  E-value=0.0037  Score=49.75  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (344)
Q Consensus       178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~  257 (344)
                      .+...|+..|++++++..+.                .+++...-.+|.|+++||...    ..+.....++++..+.++|
T Consensus        15 ~i~~~L~~~G~~~~v~~~~~----------------~~~~~~~~~~~gvilsgg~~~----~~~~~~~~~i~~~~~~~~P   74 (188)
T d1wl8a1          15 RIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGPSL----ENTGNCEKVLEHYDEFNVP   74 (188)
T ss_dssp             HHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCSCT----TCCTTHHHHHHTGGGTCSC
T ss_pred             HHHHHHHHCCCeEEEEeCCC----------------CHHHHhhhccceeeeccCccc----ccccccccccccccccccc
Confidence            46788999999998875543                244444457899999998432    2344567788888999999


Q ss_pred             EEEEcchhhhhhhh
Q 019238          258 YGAICASPALVLEP  271 (344)
Q Consensus       258 I~aic~G~~~lLa~  271 (344)
                      +.+||-|..+ |+.
T Consensus        75 iLGIClG~Q~-l~~   87 (188)
T d1wl8a1          75 ILGICLGHQL-IAK   87 (188)
T ss_dssp             EEEETHHHHH-HHH
T ss_pred             eeehhhhhhh-hhh
Confidence            9999999776 654

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=96.39  E-value=0.0045  Score=52.61  Aligned_cols=110  Identities=13%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             CCCeEEEEeC-CCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238          159 NSPQILVPIA-NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (344)
Q Consensus       159 ~~~~v~ill~-~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~  235 (344)
                      +++||+||=. |.-...|. .+...|....  ++++++....-....++....-.--.+++++....||++||.|+....
T Consensus        18 rpL~I~iLNlMP~k~~TE~-qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~   96 (281)
T d2ghra1          18 RALKIAILNLMPTKQETEA-QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVET   96 (281)
T ss_dssp             CCEEEEEECCCSSHHHHHH-HHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTT
T ss_pred             ceeEEEEEecCCcchhhHH-HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCc
Confidence            6789999832 22233332 2445554444  455666554421111111111111235677777889999999985332


Q ss_pred             Hhhhc---CHHHHHHHHHHHhcCCcEEEEcchhhhhh
Q 019238          236 QAFAK---SKKLVNMLKKQKESNRPYGAICASPALVL  269 (344)
Q Consensus       236 ~~l~~---~~~l~~~l~~~~~~~k~I~aic~G~~~lL  269 (344)
                      ....+   =+.+.++++....+.+.+.+||-|..+++
T Consensus        97 ~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~  133 (281)
T d2ghra1          97 LSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGL  133 (281)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHH
Confidence            22222   25788899999999999999999976633

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.015  Score=45.90  Aligned_cols=86  Identities=23%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH--hh
Q 019238          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--AF  238 (344)
Q Consensus       161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~--~l  238 (344)
                      |||+|+=|. .  .-+..+...|+..|+++.+++.                   .++.  .++|.+|+||+-....  ..
T Consensus         1 Mki~IiD~G-~--gN~~si~~~l~~lg~~~~i~~~-------------------~~~i--~~~d~lIlpG~g~~~~~~~~   56 (195)
T d1ka9h_           1 MKALLIDYG-S--GNLRSAAKALEAAGFSVAVAQD-------------------PKAH--EEADLLVLPGQGHFGQVMRA   56 (195)
T ss_dssp             CEEEEECSS-C--SCHHHHHHHHHHTTCEEEEESS-------------------TTSC--SSCSEEEECCCSCHHHHHHT
T ss_pred             CEEEEEeCC-C--cHHHHHHHHHHHCCCeEEEECC-------------------HHHH--HHHhhhhcCCCccccchhhh
Confidence            566655433 2  2334477888889988876432                   1233  5689999999732111  12


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                      .....+...+......++++.++|.|..+ |+.
T Consensus        57 ~~~~~~~~~~~~~~~~g~pilGiClG~ql-l~~   88 (195)
T d1ka9h_          57 FQESGFVERVRRHLERGLPFLGICVGMQV-LYE   88 (195)
T ss_dssp             TSSSCTHHHHHHHHHTTCCEEECTHHHHT-TSS
T ss_pred             ccccCCcccccccccccchhhhhhhhhhe-eee
Confidence            23334667788888999999999999654 764

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=95.74  E-value=0.0083  Score=47.90  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (344)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l  244 (344)
                      ||+-|.++.... .+++.|+..|+++.++..+..            .+...+++...++|.|++.||.+.+...    .-
T Consensus         3 iliiD~~DSFt~-ni~~~l~~lG~~~~v~~~~~~------------~~~~~~~l~~~~~~~iils~Gpg~~~~~----~~   65 (192)
T d1i7qb_           3 ILLLDNVDSFTY-NLVDQLRASGHQVVIYRNQIG------------AEVIIERLQHMEQPVLMLSPGPGTPSEA----GC   65 (192)
T ss_dssp             EEEEECSCSSHH-HHHHHHHHTTCEEEEEETTSC------------HHHHHHHHHHCSSEEEEECCCSSCGGGS----TT
T ss_pred             EEEEECCCcHHH-HHHHHHHHCCCeEEEEeCCCc------------ccccHHHHHhcCCCeEEecCcccccccc----cc
Confidence            445555544322 467889999999888765542            1112233333578999997775544331    22


Q ss_pred             HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (344)
Q Consensus       245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a  272 (344)
                      ..++++..++++||.+||-|..+ |+.+
T Consensus        66 ~~~i~~~l~~~iPiLGIClG~Q~-la~~   92 (192)
T d1i7qb_          66 MPELLQRLRGQLPIIGICLGHQA-IVEA   92 (192)
T ss_dssp             HHHHHHHHBTTBCEEEETHHHHH-HHHH
T ss_pred             chhhHHhhhcCccEEeeeHHHHH-HHHH
Confidence            34567778899999999999887 6654

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.011  Score=47.44  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l  238 (344)
                      ..+||+|+=+ |....  ..+...++..|+++++++.+..                .++.....+|.+++.||...+.. 
T Consensus         4 ~~~kI~IiD~-G~~~~--~~I~r~lr~lg~~~~I~~~d~~----------------~~~~~~~~~~giils~gp~~~~~-   63 (205)
T d1gpma2           4 HKHRILILDF-GSQYT--QLVARRVRELGVYCELWAWDVT----------------EAQIRDFNPSGIILSGGPESTTE-   63 (205)
T ss_dssp             TSSEEEEEEC-SCTTH--HHHHHHHHHTTCEEEEEESCCC----------------HHHHHHHCCSEEEECCCSSCTTS-
T ss_pred             ccCeEEEEEC-CchHH--HHHHHHHHHCCCEEEEECCCCC----------------HHHHhhcCCCeEEecCCCCccch-
Confidence            3578887754 32221  2356788999999888765431                22222246899999998543322 


Q ss_pred             hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (344)
Q Consensus       239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~  271 (344)
                         .....+++...+.++||.+||-|..+ |+.
T Consensus        64 ---~~~~~~~~~~~~~~~PiLGIClG~Ql-la~   92 (205)
T d1gpma2          64 ---ENSPRAPQYVFEAGVPVFGVCYGMQT-MAM   92 (205)
T ss_dssp             ---TTCCCCCGGGGTSSSCEEEETHHHHH-HHH
T ss_pred             ---hhhhhHHHHHHhCCCCEEEeccchhh-hhh
Confidence               12223456667889999999999877 664

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.22  E-value=0.078  Score=43.53  Aligned_cols=44  Identities=25%  Similarity=0.407  Sum_probs=34.4

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV  268 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~l  268 (344)
                      .++|.|+||||++.    +.-+--+.-++.+.+++.|..+||-|..+.
T Consensus        57 ~~~dGIlvPGGFG~----rG~eGki~ai~yARen~iPfLGIClGmQ~a  100 (250)
T d1vcoa1          57 RDVSGILVPGGFGV----RGIEGKVRAAQYARERKIPYLGICLGLQIA  100 (250)
T ss_dssp             TTCSCEEECCCCSS----TTHHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             hcCCeEEecCCCCc----cchHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence            67899999999762    223345667888889999999999997653

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.19  E-value=0.081  Score=44.00  Aligned_cols=91  Identities=11%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             hHHHHHhCCCeEEEEEecC----CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhh-CCCEEEEE
Q 019238            6 TIDVLRRSGADVVVASVEK----QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQAS-DGRLYAAI   80 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~----~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~-~g~~i~ai   80 (344)
                      .+..|+.+|+++..|..+.    ........++.+.---+..|... +|.........+..+...+.+++. +++++.+|
T Consensus        23 ~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~-ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGI  101 (262)
T d1t3ta2          23 MAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLG-AGEGWAKSILFNHRVRDEFETFFHRPQTLALGV  101 (262)
T ss_dssp             HHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTS-TTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEE
T ss_pred             HHHHHHHcCCceEEEEeeecccCcccccccceEEEecccccccccc-chhHHHhhhhhhhHHHHHHHHHhhcCCceEEee
Confidence            3456889999999998762    11122233333333223222211 221222233446667777777775 68999999


Q ss_pred             chhHHHHHHHcC-CCCCCC
Q 019238           81 CVFLAVALGSWG-LLKGLK   98 (344)
Q Consensus        81 C~g~~~~La~aG-ll~g~~   98 (344)
                      |.|. -+|.+.| |+.|..
T Consensus       102 CNGf-QiL~elg~l~pg~~  119 (262)
T d1t3ta2         102 CNGC-QMMSNLRELIPGSE  119 (262)
T ss_dssp             THHH-HHHHTTGGGSTTCT
T ss_pred             chHH-HHHHHhcccCCCcc
Confidence            9999 5999986 555543

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.81  E-value=0.073  Score=43.42  Aligned_cols=93  Identities=11%  Similarity=0.027  Sum_probs=59.0

Q ss_pred             CCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-h
Q 019238          160 SPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-A  235 (344)
Q Consensus       160 ~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~  235 (344)
                      .+||+++-+-   .-...=+....+.|...++++..+.....               ..+.+  .+.|+|++.||... .
T Consensus        31 ~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~---------------~~~~l--~~ad~I~v~GGn~~~l   93 (229)
T d1fyea_          31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVAD---------------PLAAI--EKAEIIIVGGGNTFQL   93 (229)
T ss_dssp             CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSC---------------HHHHH--HHCSEEEECCSCHHHH
T ss_pred             CCeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEeccccc---------------HHHHH--hhCCEEEEcCCCHHHH
Confidence            4677777442   11211234456677778888766543321               12333  56799999999421 1


Q ss_pred             HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (344)
Q Consensus       236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa  270 (344)
                      .....+..+.+.|++.+++|+++++..+|+.+ +.
T Consensus        94 ~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v-~~  127 (229)
T d1fyea_          94 LKESRERGLLAPMADRVKRGALYIGWSAGANL-AC  127 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCEEEEETHHHHH-TS
T ss_pred             HHHHHhCCHHHHHHHHHHcCCeEEEeChhHhh-cC
Confidence            12345556788999999999999999999644 65

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.74  E-value=0.036  Score=44.30  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhh-hcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      ++.|++.|+++.++...  +.              +++++-.   ||.... ........+.++|+++.++|+++.+||.
T Consensus        22 ~~al~~~G~~~~~v~~~--~~--------------l~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGICl   85 (202)
T d1q7ra_          22 VRAIEACGAEAVIVKKS--EQ--------------LEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCA   85 (202)
T ss_dssp             HHHHHHTTCEEEEECSG--GG--------------GTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETT
T ss_pred             HHHHHHCCCcEEEECCH--HH--------------HhcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeeh
Confidence            45678888887777422  11              2222211   553221 1122335667899999999999999999


Q ss_pred             hHHHHHHHcC
Q 019238           83 FLAVALGSWG   92 (344)
Q Consensus        83 g~~~~La~aG   92 (344)
                      |. .+|++..
T Consensus        86 G~-Qll~~~~   94 (202)
T d1q7ra_          86 GL-ILLAKRI   94 (202)
T ss_dssp             HH-HHHEEEE
T ss_pred             hh-HHhhhhc
Confidence            99 5887643

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=90.67  E-value=0.062  Score=42.59  Aligned_cols=68  Identities=16%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCch-hhhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMP-GATNLKESEVLESIVKKQASDGRLYAAICV   82 (344)
Q Consensus         7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~-~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (344)
                      ...|++.|+++.++....  .              +++++-.   ||.. ....+.+...+.++|+++.++|+++.+||.
T Consensus        17 ~~al~~~G~~~~~i~~~~--~--------------l~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~   80 (195)
T d2nv0a1          17 IHAIEACGAAGLVVKRPE--Q--------------LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCA   80 (195)
T ss_dssp             HHHHHHTTCEEEEECSGG--G--------------GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETH
T ss_pred             HHHHHHCCCcEEEECCHH--H--------------HhhCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccc
Confidence            456788898888775321  1              2222221   5422 222222334567889999999999999999


Q ss_pred             hHHHHHHHc
Q 019238           83 FLAVALGSW   91 (344)
Q Consensus        83 g~~~~La~a   91 (344)
                      |- .+|++.
T Consensus        81 G~-Qll~~~   88 (195)
T d2nv0a1          81 GL-IILAKE   88 (195)
T ss_dssp             HH-HHHSBC
T ss_pred             cH-HHHHhh
Confidence            99 588764

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.14  Score=42.21  Aligned_cols=45  Identities=29%  Similarity=0.549  Sum_probs=36.2

Q ss_pred             CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhh
Q 019238          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL  269 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lL  269 (344)
                      .++|.|+||||++.    +.-+--+..++.+.+++.|..+||-|..++.
T Consensus        56 ~~~dGIlvPGGFG~----RG~eGki~ai~yARen~iPfLGIClGmQ~av  100 (258)
T d1s1ma1          56 KGLDAILVPGGFGY----RGVEGMITTARFARENNIPYLGICLGMQVAL  100 (258)
T ss_dssp             TTCSEEEECCCCSS----TTHHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             cccccEEeecccCc----CCHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            67999999999762    2345567888989999999999999976533

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=90.38  E-value=0.17  Score=41.08  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=46.3

Q ss_pred             hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhccc---CChHHHHHHHHHhhCCCEEEE
Q 019238            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLK---ESEVLESIVKKQASDGRLYAA   79 (344)
Q Consensus         6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~---~~~~~~~~l~~~~~~g~~i~a   79 (344)
                      ..++|++.|++++++-+..++...          ..+++.+-.   ||..+...-.   -.....++|++..++++++.+
T Consensus        20 ~~~~l~~~g~~~~~~~~~~~~~~p----------~~l~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilG   89 (230)
T d1o1ya_          20 MEDIFREKNWSFDYLDTPKGEKLE----------RPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLG   89 (230)
T ss_dssp             HHHHHHHTTCEEEEECGGGTCCCS----------SCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHCCCEEEEEECCCCCcCC----------cchhhCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEE
Confidence            456778889988887655321110          011222211   5532222111   134667899999999999999


Q ss_pred             EchhHHHHHHHc
Q 019238           80 ICVFLAVALGSW   91 (344)
Q Consensus        80 iC~g~~~~La~a   91 (344)
                      ||-|.- +|+.+
T Consensus        90 IC~G~Q-lla~a  100 (230)
T d1o1ya_          90 ICLGSQ-MLAKV  100 (230)
T ss_dssp             ETHHHH-HHHHH
T ss_pred             eecCHH-HHHHH
Confidence            999995 89876

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.48  Score=39.62  Aligned_cols=49  Identities=20%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             CCccEEEEcCCccchHh---hhcCHHHHHHHHHHHh--cCCcEEEEcchhhhhhh
Q 019238          221 LSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQKE--SNRPYGAICASPALVLE  270 (344)
Q Consensus       221 ~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~~~--~~k~I~aic~G~~~lLa  270 (344)
                      ...|.|++|||......   ....+.+.++......  +..||.+||-|..+ |+
T Consensus        58 ~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Ql-l~  111 (288)
T d1l9xa_          58 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEE-LS  111 (288)
T ss_dssp             HHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHH-HH
T ss_pred             hhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHH-HH
Confidence            34699999999532211   1122334444444444  34699999999876 53

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=83.03  E-value=1.2  Score=32.79  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=53.6

Q ss_pred             CCeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238          160 SPQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (344)
Q Consensus       160 ~~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~  237 (344)
                      .+||.|+-+.  |....=.-.+.+.|...|+++.++..... .          .+....++  .+||.+++...... . 
T Consensus         2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~-~----------~~~~~~~l--~~~d~vi~Gspt~~-~-   66 (152)
T d1e5da1           2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKAC-H----------HSQIMSEI--SDAGAVIVGSPTHN-N-   66 (152)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS-C----------HHHHHHHH--HTCSEEEEECCCBT-T-
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccC-C----------hhhhccch--hhCCEEEEeccccC-C-
Confidence            4688887765  44444444677788888999888776542 1          11123344  67999999654211 1 


Q ss_pred             hhcCHHHHHHHHHH---HhcCCcEEEEcch
Q 019238          238 FAKSKKLVNMLKKQ---KESNRPYGAICAS  264 (344)
Q Consensus       238 l~~~~~l~~~l~~~---~~~~k~I~aic~G  264 (344)
                       ...+.+.+|+...   ..++++++.+++.
T Consensus        67 -~~~~~~~~~l~~~~~~~~~~k~~~~fgs~   95 (152)
T d1e5da1          67 -GILPYVAGTLQYIKGLRPQNKIGGAFGSF   95 (152)
T ss_dssp             -BCCHHHHHHHHHHHHTCCCSCEEEEEEEE
T ss_pred             -ccCchhHHHHHHhhccCCCCCEEEEEEee
Confidence             1234455555544   3468888888764

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=80.96  E-value=6.1  Score=26.62  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             CCCeEEEEeCCCcchhHH-----HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc
Q 019238          159 NSPQILVPIANGSEEMEA-----VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG  233 (344)
Q Consensus       159 ~~~~v~ill~~g~~~~e~-----~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~  233 (344)
                      |++||+|+.--...+-|+     ..+.+.|.+.++++..+..+..               .+......++|+++..= ++
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~---------------~~~~~~~~~~d~vF~~l-HG   64 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV---------------DVTQLKSMGFQKVFIAL-HG   64 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS---------------CGGGTTTTTEEEEEECC-CS
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccc---------------cchhhhccCceeEEEec-cC
Confidence            457899887665567776     4667788889999988776553               22333335688877752 11


Q ss_pred             chHhhhcCHHHHHHHHHH
Q 019238          234 GAQAFAKSKKLVNMLKKQ  251 (344)
Q Consensus       234 ~~~~l~~~~~l~~~l~~~  251 (344)
                      ..   =+|..+..++...
T Consensus        65 ~~---GEdG~iQ~~le~l   79 (96)
T d1iowa1          65 RG---GEDGTLQGMLELM   79 (96)
T ss_dssp             TT---TSSSHHHHHHHHH
T ss_pred             cc---hhccHHHHHHHHc
Confidence            11   1466666666654