Citrus Sinensis ID: 019243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Secondary Structure (PSIPRED)
cccccccHHHEEccccccEEEEcccccccHHHHHHcccccccccHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEcccccEEccccccccccEEEEEEcccccccccHHHHccccccccccccccEEEEEEccccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAVVVGNLALLldvasprtlitdrksrpLALDVLlnlpkrdlhlNYSALANKsldsegeswnhrvvtrgkvnskvnavdfdagssdeengngngekeeYDWEKEMRRRVKEIEEMRELEKKAEELQSKaeeddseseakEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGaltiiprptffggEIQIWLAMAYEANNRHADCIALYKQlesnhpskniRRQAADLRYILQapklkisqeemvtipligssydsyaatwsdknkdrdqrvggsttnqlpssrdflgdflvwrppvgleknrAFWVGLTLWFGLVGAAIFLQR
Flexible Loop (DISEMBL)
MAVVVGNLAllldvasprtlitdrksrplALDVLLNLPKRDLHLNYSALANksldsegeswnhrvvtrgkvnskvnavdfdagssdeengngngekeeydwekEMRRRVKEIEEMRELEKKaeelqskaeeddseseakeeteeekrmRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQApklkisqeemVTIPLIGSSYDSYAATWsdknkdrdqrvggsttnqlpssrdfLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Low Complexity Region (SEG)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDeengngngekeeYDWEKEMRRRVkeieemrelekkaeeLQSkaeeddseseakeeteeekrmrvrrelekvAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Disordered region (IsUnstruct)
**VVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALAN*********WNHRVVT*****************************************************************************************************QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE*******IRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATW***********************DFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFL**
Disordered Region (DISOPRED)
*****GNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN*********D*******************************************************************************************************************MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLI*****************************************VWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Disordered Region (DISEMBL)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAG********************EMRRRVKEIEEMR**********************************RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSD**************NQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Disordered Region (DISPRO)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNS*************************YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEE*******************RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGS********************************DFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
255574017	345	conserved hypothetical protein [Ricinus	0.985	0.982	0.768	1e-140
225470567	346	PREDICTED: uncharacterized protein LOC10	0.979	0.973	0.729	1e-137
449434973	343	PREDICTED: uncharacterized protein LOC10	0.933	0.935	0.75	1e-130
297814880	349	binding protein [Arabidopsis lyrata subs	0.982	0.968	0.676	1e-130
15231576	350	uncharacterized protein [Arabidopsis tha	0.982	0.965	0.668	1e-128
312281531	354	unnamed protein product [Thellungiella h	0.982	0.954	0.669	1e-127
357517317	321	hypothetical protein MTR_8g069450 [Medic	0.927	0.993	0.667	1e-116
2253092	339	hypothetical protein [Spinacia oleracea]	0.959	0.973	0.609	1e-115
356563260	328	PREDICTED: uncharacterized protein LOC10	0.901	0.945	0.695	1e-112
255573999	278	conserved hypothetical protein [Ricinus	0.75	0.928	0.839	1e-108

>gi|255574017|ref|XP_002527926.1| conserved hypothetical protein [Ricinus communis] gi|223532701|gb|EEF34483.1| conserved hypothetical protein [Ricinus communis]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/350 (76%), Positives = 300/350 (85%), Gaps = 11/350 (3%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSA---LANKSLDSE 57
           MAVV GNLALLLDV SP  ++ +RK RP+++DV+LNLPKRD H +  +   L +KS +S 
Sbjct: 1   MAVVGGNLALLLDVISPWAVVLERKMRPVSVDVVLNLPKRDHHHHTCSSVSLGSKSFESG 60

Query: 58  G-ESWNHRVVTRGKVNSKVNAVDFDAGSSDEENG-NGNGEKE-EYDWEKEMRRRVKEIEE 114
           G ES   RVVTRGK NSK+N VDFD   SDEE+G NG GE+E    WEKEMR+RVKEIEE
Sbjct: 61  GKESRKQRVVTRGKANSKMNGVDFD---SDEESGSNGEGEEEPALGWEKEMRKRVKEIEE 117

Query: 115 MRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFEL 174
           MRELEKKAEELQSKAEE  +ESE +EETEEEKRMRVR+ELEKVA+EQAERR TAQLMFEL
Sbjct: 118 MRELEKKAEELQSKAEE--TESEDREETEEEKRMRVRKELEKVAREQAERRETAQLMFEL 175

Query: 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234
           GQKAYGKGMY RAIEFLE ALTIIPR T FGGEIQIWLAMAYEANNRH DCIALY+QLE 
Sbjct: 176 GQKAYGKGMYARAIEFLEAALTIIPRSTLFGGEIQIWLAMAYEANNRHKDCIALYRQLEM 235

Query: 235 NHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGG 294
           +HPS +IRRQAA+LRYILQAPKLKISQEEMVTIPLIGS+YDSYAATW++K KD+DQR+ G
Sbjct: 236 SHPSISIRRQAANLRYILQAPKLKISQEEMVTIPLIGSAYDSYAATWTEKYKDKDQRLSG 295

Query: 295 STTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
           STTNQLPSSRD+L D LVWRPPVGL+KN AFWV LTLW GLVGAA+ LQR
Sbjct: 296 STTNQLPSSRDYLADLLVWRPPVGLQKNTAFWVALTLWLGLVGAALILQR 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470567|ref|XP_002272662.1| PREDICTED: uncharacterized protein LOC100264929 [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/351 (72%), Positives = 292/351 (83%), Gaps = 14/351 (3%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALANKSLDSE 57
           MAVV+GN+ALLLDV SP T I DRK+R  + +V+LNL KRD H +   Y++LA KS +S+
Sbjct: 1   MAVVLGNIALLLDVTSPLTGIPDRKARTASHEVVLNLSKRDSHHSTNAYASLATKSFESD 60

Query: 58  GESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE-----YDWEKEMRRRVKEI 112
           GE+ NHRVV RGK NSKVN VD DAGSSDEE        ++     +DWEK MR+R+KEI
Sbjct: 61  GEARNHRVVARGKANSKVNGVDSDAGSSDEEGNGNGNGNDDEDEETFDWEKAMRKRMKEI 120

Query: 113 EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMF 172
           EEM+ELE KAEELQS+       +E +EE+EEEKRMRVR+ELEKVAKEQAERRATAQLMF
Sbjct: 121 EEMKELEMKAEELQSRV------AEGQEESEEEKRMRVRKELEKVAKEQAERRATAQLMF 174

Query: 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232
           +LGQ+AYGKG Y RAIEF EGALTIIP PT FGGEIQIWLAMAYEANNRHADCIALY+QL
Sbjct: 175 DLGQRAYGKGTYSRAIEFFEGALTIIPPPTLFGGEIQIWLAMAYEANNRHADCIALYQQL 234

Query: 233 ESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRV 292
           E  HPS +IRRQAADLRYILQAPKLKI+QEEMVTIPLIGSSYDSYAATW+DK KD+D++ 
Sbjct: 235 ERKHPSVSIRRQAADLRYILQAPKLKITQEEMVTIPLIGSSYDSYAATWTDKYKDKDEKR 294

Query: 293 GGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQ 343
             STTNQLPS+RD++GDFLVWRPPVG EKNRAFWV  TLW GLVGAA+FLQ
Sbjct: 295 SWSTTNQLPSTRDYIGDFLVWRPPVGWEKNRAFWVAFTLWLGLVGAAVFLQ 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434973|ref|XP_004135270.1| PREDICTED: uncharacterized protein LOC101221356 [Cucumis sativus] gi|449521583|ref|XP_004167809.1| PREDICTED: uncharacterized protein LOC101229482 [Cucumis sativus]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/328 (75%), Positives = 284/328 (86%), Gaps = 7/328 (2%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGES 60
           MAVV+GN ALLLDV SPR ++ DRK+RPLALDV+L+L KRDL+  Y+A+  KS +++GE+
Sbjct: 1   MAVVLGNWALLLDVTSPRIVLADRKARPLALDVVLSLHKRDLNAYYAAIVGKSFEADGEA 60

Query: 61  WNHRVVTRGKVNSKVNA-VDFDAGSSDEENGNGNG--EKEEYDWEKEMRRRVKEIEEMRE 117
            + R+V RGK NSK N  V+F+  S +EEN   NG  E+E+ DWE+EMR+RVKEIEE RE
Sbjct: 61  RSQRIVARGKANSKKNGGVEFE--SDEEENWESNGLDEEEKLDWEQEMRKRVKEIEERRE 118

Query: 118 LEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQK 177
           LEKKAEE+QS+ EE    SE  EETEEEKRMRVR+ELEKVAKEQAERRATA+LMFELGQK
Sbjct: 119 LEKKAEEIQSQVEE--EGSEGIEETEEEKRMRVRKELEKVAKEQAERRATAELMFELGQK 176

Query: 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237
           AYG+GMY RAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALY+QLE  HP
Sbjct: 177 AYGRGMYSRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHGDCIALYRQLEKTHP 236

Query: 238 SKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTT 297
           S +IRRQAA+LRYILQAPK+KISQEEMVTIPLIGSSYDSYAATWSDKNKD+DQ+   STT
Sbjct: 237 SVSIRRQAAELRYILQAPKIKISQEEMVTIPLIGSSYDSYAATWSDKNKDKDQKGSWSTT 296

Query: 298 NQLPSSRDFLGDFLVWRPPVGLEKNRAF 325
           NQLPSS+D+LGDFLVWRPP+GL K++AF
Sbjct: 297 NQLPSSKDYLGDFLVWRPPIGLGKSQAF 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814880|ref|XP_002875323.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297321161|gb|EFH51582.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/355 (67%), Positives = 284/355 (80%), Gaps = 17/355 (4%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
           MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNLPKRD H +   Y+AL+ NK L+S
Sbjct: 1   MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLPKRDSHSHVSHYAALSSNKPLES 60

Query: 57  EGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE-------YDWEKEMRRRV 109
           +GE+   R +TRGK NS+ NAVDFD   S +E  +  G           +D EKE +RR 
Sbjct: 61  DGEARIRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEDFDVEKERKRRA 120

Query: 110 KEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQ 169
           KE ++M+ELE+KAEELQ K +E+  +SE      E+KRMRV+REL+KVA+EQAERR TA+
Sbjct: 121 KEFQDMKELERKAEELQYKIDEEGDDSE------EKKRMRVKRELQKVAQEQAERRKTAE 174

Query: 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229
           LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHADCI LY
Sbjct: 175 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHADCIDLY 234

Query: 230 KQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRD 289
           +QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYDSYA TWSDK++D++
Sbjct: 235 QQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYDSYAVTWSDKDRDKE 294

Query: 290 QRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
           +R+  STTNQL SS DFLG  LVWRP VG+EKNR FW+ LTLWFGLVGAA+ LQR
Sbjct: 295 RRMNESTTNQLNSSEDFLGKLLVWRPAVGMEKNRVFWLALTLWFGLVGAALILQR 349

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231576|ref|NP_189290.1| uncharacterized protein [Arabidopsis thaliana] gi|1402877|emb|CAA66827.1| hypothetical protein [Arabidopsis thaliana] gi|1495257|emb|CAA66117.1| orf03 [Arabidopsis thaliana] gi|9293937|dbj|BAB01840.1| unnamed protein product [Arabidopsis thaliana] gi|22655244|gb|AAM98212.1| unknown protein [Arabidopsis thaliana] gi|28059607|gb|AAO30074.1| unknown protein [Arabidopsis thaliana] gi|110742431|dbj|BAE99134.1| hypothetical protein [Arabidopsis thaliana] gi|332643661|gb|AEE77182.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/356 (66%), Positives = 280/356 (78%), Gaps = 18/356 (5%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
           MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNL KRD H +   Y+AL+ NK L+S
Sbjct: 1   MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLQKRDSHSHVSHYAALSSNKPLES 60

Query: 57  EGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE--------YDWEKEMRRR 108
           +GE+   R +TRGK NS+ NAVDFD   S +E  +  G            +D EKE +RR
Sbjct: 61  DGEARVRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEEYFDVEKERKRR 120

Query: 109 VKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATA 168
            KE  + +ELE+KAEELQ K +E+  +SE      E+KRMRV+REL+KVA+EQAERR TA
Sbjct: 121 AKEFHDTKELERKAEELQYKIDEEGDDSE------EKKRMRVKRELQKVAQEQAERRKTA 174

Query: 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228
           +LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHADCI L
Sbjct: 175 ELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHADCIDL 234

Query: 229 YKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDR 288
           Y+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYDSYA TWSDK +D+
Sbjct: 235 YQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYDSYAVTWSDKERDK 294

Query: 289 DQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
           ++R+  STTNQL SS DFLG  LVWRP VG+EKNR FW+ LTLWFGLVGAA+ LQR
Sbjct: 295 ERRMNASTTNQLNSSDDFLGKLLVWRPVVGMEKNRVFWLALTLWFGLVGAALILQR 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281531|dbj|BAJ33631.1| unnamed protein product [Thellungiella halophila]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/360 (66%), Positives = 287/360 (79%), Gaps = 22/360 (6%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP--KRDLHLN--YSALA-NKSLD 55
           MA V+GN+ALLLDV S R ++TDR+ R    D++LNL   KRD H +  Y+AL+ NK L+
Sbjct: 1   MAAVIGNVALLLDVNSHRAVVTDRRIRLTVADIVLNLQSQKRDSHSHAYYAALSSNKPLE 60

Query: 56  SEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENG-----------NGNGEKEEYDWEKE 104
           S+G++   R +TRGK NS+ NAVDFD   S +E               + E++ YD EKE
Sbjct: 61  SDGDARIRRFLTRGKANSRANAVDFDDAGSSDEESGGDGGGGGDGMETDEEEKAYDLEKE 120

Query: 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAER 164
            +RR KE+++M ELE+KAEELQ K EE+  +SE K      KRMRV+RELEKVA+EQAER
Sbjct: 121 RKRRAKELQDMMELERKAEELQYKVEEEGEDSEEK------KRMRVKRELEKVAQEQAER 174

Query: 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224
           RATA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHAD
Sbjct: 175 RATAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHAD 234

Query: 225 CIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDK 284
           CI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYDSYA TWSDK
Sbjct: 235 CIDLYQQLEKRHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYDSYAVTWSDK 294

Query: 285 NKDRDQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
           ++D+++R+  STTNQL +S+DFLG  LVWRPPVG+EKN+AFW+ LTLWFGLVGAA+FLQR
Sbjct: 295 DRDKERRMNESTTNQLGTSQDFLGKLLVWRPPVGMEKNQAFWLALTLWFGLVGAALFLQR 354

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517317|ref|XP_003628947.1| hypothetical protein MTR_8g069450 [Medicago truncatula] gi|355522969|gb|AET03423.1| hypothetical protein MTR_8g069450 [Medicago truncatula]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/346 (66%), Positives = 268/346 (77%), Gaps = 27/346 (7%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP-KRDLHLNYSALANKSLDSEGE 59
           MAV +GNL +LLD++SPRTL  DRK        LL LP KRD      +        +GE
Sbjct: 1   MAVSLGNLTILLDISSPRTLTLDRKP-------LLTLPLKRDSSSCSCSYG-----CDGE 48

Query: 60  SWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELE 119
                VV RGK NS+ N VDFD+  SDEE G G+G+    D+E ++RRRVKE EE RELE
Sbjct: 49  VRGRVVVARGKSNSEQNGVDFDS-ESDEEGGLGDGD----DFETKIRRRVKEFEERRELE 103

Query: 120 KKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178
           KKAEE LQSK      + + +EE+EEEKRMRV++ELEKVAKEQAERRATAQLM++LG+KA
Sbjct: 104 KKAEEYLQSK-----GDDDGEEESEEEKRMRVKKELEKVAKEQAERRATAQLMYDLGKKA 158

Query: 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238
           YG+G YGRA+EFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALYKQLE++HPS
Sbjct: 159 YGRGSYGRAVEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHKDCIALYKQLENSHPS 218

Query: 239 KNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTTN 298
            +I+RQAA+LRYIL+APKLKI+QEEMVTIPLIGSSYDSYA TWSDKNKDR     G+  +
Sbjct: 219 ISIKRQAAELRYILEAPKLKITQEEMVTIPLIGSSYDSYAGTWSDKNKDRKS---GTVNS 275

Query: 299 QLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
             PSSRD L D LVWRPP GL KNRAFWVGLT+W  LVGAA+++QR
Sbjct: 276 PFPSSRDNLLDLLVWRPPAGLGKNRAFWVGLTIWLVLVGAALYIQR 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2253092|emb|CAA74590.1| hypothetical protein [Spinacia oleracea]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/353 (60%), Positives = 264/353 (74%), Gaps = 23/353 (6%)

Query: 1   MAVVVGNLALLLDVASPRTLITD--RKSRPLALDVLLNL--PKRDLHLNYSALANKSLDS 56
           MA V+G L L +D+  P  +++D  +K R L  DV+L+L  P+RD               
Sbjct: 1   MATVLGTLVLPVDLTLPAKIVSDHRKKLRLLPYDVVLSLGLPRRD--------------K 46

Query: 57  EGESWNHRV-VTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE----YDWEKEMRRRVKE 111
           E + W   + + R   + K NAV++ +G  +           +    +DWE EMR+RVKE
Sbjct: 47  EFQLWGENLSLGRLSFSRKSNAVEYSSGDENGNGNGEEEGGGDDEPVFDWETEMRKRVKE 106

Query: 112 IEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLM 171
           IEEMRELEKKAEELQ + +++ S+    +ETEEEK+MRVR+ELEKVAKEQAERRATAQLM
Sbjct: 107 IEEMRELEKKAEELQGRIDDEGSDGSGVDETEEEKKMRVRKELEKVAKEQAERRATAQLM 166

Query: 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231
           FELGQKAYG+GMY R+IEF E ALTIIPRPT FGGEIQIWLAMAYEAN+RHADCIALYK+
Sbjct: 167 FELGQKAYGRGMYKRSIEFFEAALTIIPRPTLFGGEIQIWLAMAYEANSRHADCIALYKK 226

Query: 232 LESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQR 291
           LE  HPS +IRRQAA+LRYIL+APK+KI+QEEMVTIPLIG+SYDSYA++W+DK+KD +Q 
Sbjct: 227 LEKGHPSVSIRRQAAELRYILEAPKIKITQEEMVTIPLIGNSYDSYASSWTDKSKDSEQV 286

Query: 292 VGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
           +G STTN  PSSRD+ GD L W+PPVGLE NR FW  +TL FGLVGAA+FLQR
Sbjct: 287 IGSSTTNAFPSSRDYAGDLLKWKPPVGLENNRIFWAAVTLSFGLVGAALFLQR 339

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563260|ref|XP_003549882.1| PREDICTED: uncharacterized protein LOC100789105 [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/332 (69%), Positives = 262/332 (78%), Gaps = 22/332 (6%)

Query: 16  SPRTLITDRKSRPLALDVLLNLP--KRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNS 73
           SPR++I +RK+RP   DV+L  P  KRD                  S ++ VV RGK NS
Sbjct: 16  SPRSVILERKARPAGSDVVLCAPPSKRDYP---------------SSSSYAVVARGKSNS 60

Query: 74  KVNAVDFDAGSSDEENGNGNGEKEEY-DWEKEMRRRVKEIEEMRELEKKAEELQSKAEED 132
           + N VDFD+   +EE   G G    + DWE EMR+RV+E EE RELEKKAEELQS+    
Sbjct: 61  EKNGVDFDSDEEEEEEEEGGGGGGGFVDWETEMRQRVREFEERRELEKKAEELQSRV--- 117

Query: 133 DSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLE 192
             E   +EETEEEKRMRVR+ELEKVAKEQAERRATAQLMF+LGQKAYGKG YGRAIEFLE
Sbjct: 118 -GEEGEEEETEEEKRMRVRKELEKVAKEQAERRATAQLMFDLGQKAYGKGSYGRAIEFLE 176

Query: 193 GALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252
            ALTIIP PT FGGEIQIWLAMAYEA+NRH DCIALY+QLE  HPS +IRRQAA+LRYIL
Sbjct: 177 AALTIIPGPTLFGGEIQIWLAMAYEAHNRHKDCIALYRQLEKTHPSVSIRRQAAELRYIL 236

Query: 253 QAPKLKISQEEMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTTNQLPSSRDFLGDFLV 312
           QAPKLKISQEEMVTIPLIGS+YDSYAATWSDK KD D+++ GS TNQLPSS+D+LGDFLV
Sbjct: 237 QAPKLKISQEEMVTIPLIGSTYDSYAATWSDKYKDNDKKISGSVTNQLPSSKDYLGDFLV 296

Query: 313 WRPPVGLEKNRAFWVGLTLWFGLVGAAIFLQR 344
           W+PPVGL KNRAFWVGLT+W GLVGAA+F+QR
Sbjct: 297 WKPPVGLGKNRAFWVGLTIWLGLVGAALFIQR 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573999|ref|XP_002527917.1| conserved hypothetical protein [Ricinus communis] gi|223532692|gb|EEF34474.1| conserved hypothetical protein [Ricinus communis]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/262 (83%), Positives = 237/262 (90%), Gaps = 4/262 (1%)

Query: 85  SDEENG-NGNGEKEE-YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEET 142
           SDEENG NG GE+E   DWEKEMR++V+EIEEMRELEKKAEELQSKAEE  SESE +EET
Sbjct: 19  SDEENGSNGEGEEEPALDWEKEMRKKVEEIEEMRELEKKAEELQSKAEE--SESEDREET 76

Query: 143 EEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202
           EEEKRMRVR+ELEKVA+EQAERR TAQLMFELGQKAYGKGMY RAIEF E ALTIIPR T
Sbjct: 77  EEEKRMRVRKELEKVAREQAERRETAQLMFELGQKAYGKGMYARAIEFFEAALTIIPRST 136

Query: 203 FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQE 262
            FGGEIQIWLAMAYEANNRH DCIALY+QLE +HPS NIRRQAA+LRYILQAPKLKISQE
Sbjct: 137 LFGGEIQIWLAMAYEANNRHKDCIALYRQLEMSHPSINIRRQAANLRYILQAPKLKISQE 196

Query: 263 EMVTIPLIGSSYDSYAATWSDKNKDRDQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKN 322
           EMVTIPLIGS+YDSYAATW+DK KD+DQR+ GSTTNQLPSSRD+L D L+WRPPVGLEKN
Sbjct: 197 EMVTIPLIGSAYDSYAATWTDKYKDKDQRLSGSTTNQLPSSRDYLADLLMWRPPVGLEKN 256

Query: 323 RAFWVGLTLWFGLVGAAIFLQR 344
            AFWV LTLW GLVGAA+ LQR
Sbjct: 257 TAFWVALTLWLGLVGAALILQR 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2088812	350	AT3G26580 "AT3G26580" [Arabido	0.543	0.534	0.823	5.8e-105

TAIR|locus:2088812 AT3G26580 "AT3G26580" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
 Identities = 154/187 (82%), Positives = 168/187 (89%)

Query:   158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217
             A+EQAERR TA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYE
Sbjct:   164 AQEQAERRKTAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYE 223

Query:   218 ANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSY 277
             ANNRHADCI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYDSY
Sbjct:   224 ANNRHADCIDLYQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYDSY 283

Query:   278 AATWSDKNKDRDQRVGGSTTNQLPSSRDFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVG 337
             A TWSDK +D+++R+  STTNQL SS DFLG  LVWRP VG+EKNR FW+ LTLWFGLVG
Sbjct:   284 AVTWSDKERDKERRMNASTTNQLNSSDDFLGKLLVWRPVVGMEKNRVFWLALTLWFGLVG 343

Query:   338 AAIFLQR 344
             AA+ LQR
Sbjct:   344 AALILQR 350

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 42/76 (55%)

Query: 91   NGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRV 150
                + EE     E +++ +E ++  E +KKAEE + KA+E    +EAK++ +E K+   
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520

Query: 151  RRELEKVAKEQAERRA 166
             ++ ++  K +  ++A
Sbjct: 1521 AKKADEAKKAEEAKKA 1536

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 96   KEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELE 155
            +E        +++ +E ++  E +KKAEE + KA+E    + AK++ +E K+    ++  
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433

Query: 156  KVAKEQAERRATAQLMFELGQKA 178
              AK++AE    A    E  +KA
Sbjct: 1434 DEAKKKAEEAKKAD---EAKKKA 1453

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.003
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 97   EEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEK 156
            +E   + E  ++  E ++  E  KKAEE + KAEE     EAK++ EE K+     E +K
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA---DEAKK 1490

Query: 157  VAKEQAERRATAQLMFELGQKA 178
             A+E  ++   A+   E  +KA
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKA 1512

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.003
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 87   EENGNGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEE-LQSKAEEDDSESEAKEETEEE 145
             E  N     EE    +E +++ +E ++  E EKKA E L+ +AEE     E K++  EE
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714

Query: 146  KR----MRVRRELEKVAKEQAERRA 166
            K+    ++   E  K+  E+A++ A
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEA 1739

Length = 2084

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 13/85 (15%)

Query: 95  EKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEED------DSESEAK----EETEE 144
           EK E + EK+ +   ++ +E+ + E++ EEL  +  ++       +  EAK    E+ EE
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEE 165

Query: 145 EKR---MRVRRELEKVAKEQAERRA 166
           E R     + +E+E+ AKE+A+++A
Sbjct: 166 EARHEAAVLIKEIEEEAKEEADKKA 190

Length = 520

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.004
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 103  KEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKR---MRVRRELEKVAK 159
            +E +++  E+++    +KKA+E + KAEE     EAK++ EE K+    + + E  K A+
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460

Query: 160  EQAERRATAQLMFELGQKA 178
            E  ++   A+   E  +KA
Sbjct: 1461 EAKKKAEEAKKADEAKKKA 1479

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.36
PF13512	142	TPR_18: Tetratricopeptide repeat	98.3
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.16
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.89
PRK10803	263	tol-pal system protein YbgF; Provisional	97.84
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.72
PRK10803	263	tol-pal system protein YbgF; Provisional	97.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.63
PF13371	73	TPR_9: Tetratricopeptide repeat	97.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.54
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.38
PRK15359	144	type III secretion system chaperone protein SscB;	97.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.32
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.16
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.05
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.03
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.97
PRK15359	144	type III secretion system chaperone protein SscB;	96.97
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.83
PF12688	120	TPR_5: Tetratrico peptide repeat	96.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.64
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.58
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.5
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.48
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.45
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	96.29
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.26
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.21
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.15
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.91
PF13428	44	TPR_14: Tetratricopeptide repeat	95.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.68
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.65
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.54
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.46
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.45
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.32
PRK11189	296	lipoprotein NlpI; Provisional	95.27
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.27
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.24
PRK14574	822	hmsH outer membrane protein; Provisional	94.97
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	94.73
PF12688	120	TPR_5: Tetratrico peptide repeat	94.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.58
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.56
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	94.43
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	94.36
PRK12370	553	invasion protein regulator; Provisional	94.25
PRK15331	165	chaperone protein SicA; Provisional	94.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.17
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.16
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.08
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.95
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.94
PRK12370	553	invasion protein regulator; Provisional	93.92
PRK14574	822	hmsH outer membrane protein; Provisional	93.65
PRK11189	296	lipoprotein NlpI; Provisional	93.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.43
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	93.36
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.18
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.16
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.12
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	93.09
PF13512	142	TPR_18: Tetratricopeptide repeat	92.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	92.48
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.44
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.28
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.16
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	91.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	91.14
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.7
KOG2076	895	consensus RNA polymerase III transcription factor	90.59
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.43
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	89.85
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	89.79
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.25
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	89.13
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	87.88
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	87.39
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.26
KOG0553	304	consensus TPR repeat-containing protein [General f	86.92
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.77
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.63
PRK15331	165	chaperone protein SicA; Provisional	85.67
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	85.58
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	85.44
COG4105	254	ComL DNA uptake lipoprotein [General function pred	85.33
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	85.2
PF13428	44	TPR_14: Tetratricopeptide repeat	84.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	83.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.6
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	83.1
COG4783	484	Putative Zn-dependent protease, contains TPR repea	82.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	82.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	81.97
KOG0553	304	consensus TPR repeat-containing protein [General f	81.91
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.81
KOG4234	271	consensus TPR repeat-containing protein [General f	81.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	81.6
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	80.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	80.45
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	80.26

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.48  E-value=1.3e-06  Score=77.83  Aligned_cols=83  Identities=23%  Similarity=0.313  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK  246 (344)
                      +++..|+.|..+|++|+|.+||+.|+.+....|. |+...+++++++.||...|+.++|+..++.+...||+..-...|-
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            4678999999999999999999999998887664 889999999999999999999999999999888999998777775


Q ss_pred             HHHh
Q 019243          247 DLRY  250 (344)
Q Consensus       247 ~LLy  250 (344)
                      .++.
T Consensus        83 Y~~g   86 (203)
T PF13525_consen   83 YMLG   86 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.39  E-value=2.2e-06  Score=62.03  Aligned_cols=63  Identities=24%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      |..|...+++|+|.+|++.|+.++...    |...++.++++.+|...|+.++|+..++.+....|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            578999999999999999999999955    558899999999999999999999999999767776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.36  E-value=1.3e-06  Score=63.24  Aligned_cols=61  Identities=28%  Similarity=0.398  Sum_probs=53.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHH
Q 019243          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIR  242 (344)
Q Consensus       178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVR  242 (344)
                      ++++|+|.+|+++|+.++...|.    ..++.+.|+.+|...|+.++|+.+|+.+...+|+ +.+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            58999999999999999997665    5789999999999999999999999999988888 4443

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.30  E-value=4.3e-06  Score=73.77  Aligned_cols=82  Identities=29%  Similarity=0.309  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      ++..|+.|+.+|++|+|..||+.||.+-+.+|. ++..-++||+|+-||-.+|+.++|++-++.+.+-||...---.|-.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            567899999999999999999999998887775 5677799999999999999999999999999999998876666655


Q ss_pred             HHh
Q 019243          248 LRY  250 (344)
Q Consensus       248 LLy  250 (344)
                      +..
T Consensus        89 ~~g   91 (142)
T PF13512_consen   89 MRG   91 (142)
T ss_pred             HHH
Confidence            443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.16  E-value=3.8e-05  Score=59.05  Aligned_cols=68  Identities=21%  Similarity=0.383  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..|..|...+.+|+|.+|+..|+.++...|. ++...++.++++.+|...|+.++|+.+|+.+...+|+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            4566666677777777777777666655442 2334566666777777777777777777766645555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.04  E-value=3e-05  Score=71.87  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK  246 (344)
                      .++..|..|..++++|+|.+|++.|+.+....|. |+...++++||+.||...|+.++|+..++...+.||+..-..+|-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4567899999999999999999999999887774 588899999999999999999999999999999999998777776


Q ss_pred             HHHhh
Q 019243          247 DLRYI  251 (344)
Q Consensus       247 ~LLyI  251 (344)
                      .++..
T Consensus       110 Y~~g~  114 (243)
T PRK10866        110 YMRGL  114 (243)
T ss_pred             HHHHH
Confidence            66653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.89  E-value=0.00015  Score=55.76  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      +...+..|...++.|+|.+|+.+|+.++...|.+ +.-..+.+.++.+|...|+.++|+..++.+...+|+...-.+|.+
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            3457889999999999999999999999877643 333578899999999999999999999999989999998888843

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.84  E-value=0.00017  Score=68.31  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL  249 (344)
                      ..|-.|...|.+|+|..|+..|+.++..+| .++....+-+.++.+|...|+.++|+.+|+.+.+.||+....+.|++-|
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            456777777777777777777777777665 3455567777777777777777777777777777777777777777665


Q ss_pred             h
Q 019243          250 Y  250 (344)
Q Consensus       250 y  250 (344)
                      .
T Consensus       261 ~  261 (263)
T PRK10803        261 N  261 (263)
T ss_pred             h
Confidence            4

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.72  E-value=0.00015  Score=52.70  Aligned_cols=66  Identities=26%  Similarity=0.394  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhC
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNH  236 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-q~ekAIALCq~L~~~H  236 (344)
                      .|..-+..|..++..|+|.+|+..|+.++...|.    ...+-+.++.+|...| +.++|+..|++..+-.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            3567889999999999999999999999997544    4679999999999999 7999999999876433

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.72  E-value=0.00096  Score=55.94  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      ..+.+.+...|+....++..|++..+.+.++.+....| +|+....++|.++.+|...|+.++|++.++.+...+|++.+
T Consensus         5 ~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l   83 (145)
T PF09976_consen    5 QQQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL   83 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence            44556677899999999999999999999999777644 56788999999999999999999999999999977789999


Q ss_pred             HHHHHHHH
Q 019243          242 RRQAADLR  249 (344)
Q Consensus       242 RqQAK~LL  249 (344)
                      +..|+--|
T Consensus        84 ~~~a~l~L   91 (145)
T PF09976_consen   84 KPLARLRL   91 (145)
T ss_pred             HHHHHHHH
Confidence            88887533

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.70  E-value=0.0009  Score=63.42  Aligned_cols=78  Identities=13%  Similarity=0.154  Sum_probs=68.0

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          169 QLMFELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       169 ~~~leaG~aA-LerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      ...|+.+... +.+|+|.+|+..|+.++..+|. ++.-..+++||+.+|...|+.++|+..++.+.+.||+..-.-.|-.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            6789999987 7789999999999999998875 5666799999999999999999999999999988998766555544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.63  E-value=0.0005  Score=60.47  Aligned_cols=77  Identities=26%  Similarity=0.334  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA  245 (344)
                      +...|..|...+..|+|..|+..|+.++...|. ++...++.+.++.+|...|+.++|+..|+.+...+|+......|
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            456899999999999999999999998887664 46667899999999999999999999999998788865543333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.59  E-value=0.00063  Score=49.78  Aligned_cols=71  Identities=20%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (344)
Q Consensus       175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL  249 (344)
                      ...++.+++|..|++.++.++...|.    ...+...++.+|...|+.++|+..+++....+|+.....+++.+|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD----DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            35689999999999999999997665    346677799999999999999999999988999999888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.54  E-value=0.00098  Score=58.63  Aligned_cols=67  Identities=21%  Similarity=0.112  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+..|...+.+|+|.+|+..++.++...|. ++...++...++.+|...|+.++|+.+++.|..+||+
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            457788899999999999999999987765 4777899999999999999999999999999988874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.38  E-value=0.00095  Score=45.71  Aligned_cols=65  Identities=26%  Similarity=0.408  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .+..|...+.+|+|..|+.+|+.++...+.+    ..+...++.+|...|+.++|+.+|+.....+|..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4567777888888888888888887765543    2677888888888888888888888876445543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.34  E-value=0.0024  Score=54.21  Aligned_cols=81  Identities=15%  Similarity=0.022  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH----HHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRR  243 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~----qVRq  243 (344)
                      +..-+..|......|+|.+|+..++.++...|    -...+...++.+|...|+.++||..|+......|+.    .++.
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDA----SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34456778888899999999999999888544    346788889999999999999999999987677775    7788


Q ss_pred             HHHHHHhhh
Q 019243          244 QAADLRYIL  252 (344)
Q Consensus       244 QAK~LLyIL  252 (344)
                      +++.++.-|
T Consensus       134 ~~~~~l~~~  142 (144)
T PRK15359        134 NAQIMVDTL  142 (144)
T ss_pred             HHHHHHHHH
Confidence            888877654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.32  E-value=0.0048  Score=49.49  Aligned_cols=69  Identities=12%  Similarity=-0.061  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      ...+..|...+..|+|.+|+..|+.++...|    ....+...++.+|...|+.++|+..++.....+|+...
T Consensus        52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        52 RYWLGLAACCQMLKEYEEAIDAYALAAALDP----DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            3556778889999999999999999887543    34678899999999999999999999999878887766

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.16  E-value=0.0024  Score=61.40  Aligned_cols=81  Identities=23%  Similarity=0.262  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      +...|+.|+..|..|+|.+|+..||.+...+|. |+..-|+++-|+-||...|+.++|++......+.||...=-..|-.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            668999999999999999999999998877764 6777999999999999999999999999988878887665555555


Q ss_pred             HH
Q 019243          248 LR  249 (344)
Q Consensus       248 LL  249 (344)
                      |.
T Consensus       113 lk  114 (254)
T COG4105         113 LK  114 (254)
T ss_pred             HH
Confidence            43

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.07  E-value=0.0058  Score=59.50  Aligned_cols=82  Identities=13%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAA  246 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK  246 (344)
                      +...+..|...+..|+|.+|+..|+.++...|.    ...+.+.++.+|...|+.++|+..|+.....+| ++.+..|-.
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456778899999999999999999999987653    367899999999999999999999999876676 488888888


Q ss_pred             HHHhhhc
Q 019243          247 DLRYILQ  253 (344)
Q Consensus       247 ~LLyILE  253 (344)
                      .+..-|.
T Consensus       112 ~~~~kl~  118 (356)
T PLN03088        112 ECDEKIA  118 (356)
T ss_pred             HHHHHHH
Confidence            8877774

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.05  E-value=0.0072  Score=50.67  Aligned_cols=65  Identities=23%  Similarity=0.240  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ....|..|..++..|+|..|++.|+.++... +...+...+++.|+.+|...|+.++|+.+.+...
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~  112 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP  112 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence            4567889999999999999999999999866 4446778899999999999999999999987654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.04  E-value=0.0028  Score=47.23  Aligned_cols=67  Identities=19%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ++......|...+..|+|.+|+.+|+.+++.   .+...+.-+.+-.-|+.+|...|+.++|+..+++-.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556778899999999999999999999974   334344447788889999999999999999988754

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.03  E-value=0.0014  Score=50.05  Aligned_cols=50  Identities=26%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      +|+|..||.+++.+++..|.++  -..+-++|+.+|...|+.++||.+++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~   51 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL   51 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            5666666666666666555422  2334455566666666666666666553

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.97  E-value=0.0057  Score=54.63  Aligned_cols=84  Identities=19%  Similarity=0.209  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHP  237 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-----------~ekAIALCq~L~~~HP  237 (344)
                      +..|..|.+.|..|+|..|+..++..+..+|.+ +.-..+.+++++++....+           ..+|+..++.|..++|
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP  121 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP  121 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence            457888999999999999999999999988864 5568999999999876543           4599999999999999


Q ss_pred             CHHHHHHHHHHHhhhc
Q 019243          238 SKNIRRQAADLRYILQ  253 (344)
Q Consensus       238 d~qVRqQAK~LLyILE  253 (344)
                      +..-...|+..+..|.
T Consensus       122 ~S~y~~~A~~~l~~l~  137 (203)
T PF13525_consen  122 NSEYAEEAKKRLAELR  137 (203)
T ss_dssp             TSTTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHH
Confidence            9999999988777663

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.97  E-value=0.0042  Score=52.78  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+..|..++.+|+|.+|+..|..++...|.    -.++.+.++.++...|+.++|+..|+....-.|+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            556799999999999999999999985444    4688899999999999999999999999866663

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.95  E-value=0.021  Score=47.37  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRR  243 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~-------~HPd~qVRq  243 (344)
                      ....+...+..|+|..|++++..++...|.    .-.+...|..+|.+.|+..+|+..|+.+..       ..|.++++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            334566788999999999999999996665    457899999999999999999999987751       247888877


Q ss_pred             HHHHHH
Q 019243          244 QAADLR  249 (344)
Q Consensus       244 QAK~LL  249 (344)
                      -.+.+|
T Consensus       141 l~~~il  146 (146)
T PF03704_consen  141 LYREIL  146 (146)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            776664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.92  E-value=0.0061  Score=41.66  Aligned_cols=64  Identities=23%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..+..|...+..|+|..|+++|+.++...+...    .+...++.+|...|+.++|+..+..+...+|
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            466778888889999999999999988665433    7788899999999999999999998874444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.83  E-value=0.0064  Score=56.74  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 019243          146 KRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (344)
Q Consensus       146 ~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA  225 (344)
                      -|.|+++.++|...       .+...|-.|..++..|+|.+|+..|+.++...|.+    ..+...++.+|...|+.++|
T Consensus        20 ~~~~~~~~~~~~~~-------~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A   88 (389)
T PRK11788         20 GRRSARQDQQKESN-------RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRA   88 (389)
T ss_pred             Hhchhhhhhhhhhh-------hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHH
Confidence            45566665655554       34457777888888888888888888888764432    46777788888888888888


Q ss_pred             HHHHHHHHhhCCC
Q 019243          226 IALYKQLESNHPS  238 (344)
Q Consensus       226 IALCq~L~~~HPd  238 (344)
                      +.+++.+. .+|+
T Consensus        89 ~~~~~~~l-~~~~  100 (389)
T PRK11788         89 IRIHQNLL-SRPD  100 (389)
T ss_pred             HHHHHHHh-cCCC
Confidence            88888887 5654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.80  E-value=0.0095  Score=50.75  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L  248 (344)
                      ..|+.|-..-..|+..+||.+++.+++. .......-++.|.++.+|...|+.++|+++-++....||+.+.....+-+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            3566777777777778888887777763 33344455677777778888888888877777777666776665555543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.68  E-value=0.013  Score=49.90  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 019243          150 VRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY  229 (344)
Q Consensus       150 v~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALC  229 (344)
                      ++..|.+..+ +..+...+...+..|...+.+|+|..|+.+|..++...+. +..-..+-.-++.+|...|+.++|+..|
T Consensus        18 ~~~~l~~~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         18 VADILLRILP-TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             chhhhhHhcc-CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444444432 2334446777899999999999999999999999887543 2233457788999999999999999999


Q ss_pred             HHHHhhCCC
Q 019243          230 KQLESNHPS  238 (344)
Q Consensus       230 q~L~~~HPd  238 (344)
                      ++....+|+
T Consensus        96 ~~Al~~~~~  104 (168)
T CHL00033         96 FQALERNPF  104 (168)
T ss_pred             HHHHHhCcC
Confidence            998744554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.64  E-value=0.013  Score=47.06  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQ  244 (344)
                      +...+..|..++..|+|..|+++|+.++...|.    ...+...++.+|...|+.++|+..|+.....+|+ +.+.-.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            345788999999999999999999998886554    3588889999999999999999999888656664 344433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.58  E-value=0.012  Score=56.89  Aligned_cols=67  Identities=15%  Similarity=0.341  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .|+.+..+|..|+|..|.+.|-..+..+|. |..-..+++||--+|.+.|+.++|..++-...+.+|+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            566666666666666666666666666654 3333566666666666666666666666666555544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.51  E-value=0.029  Score=46.23  Aligned_cols=59  Identities=15%  Similarity=0.160  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+..|...+..|+|.+|+++++.++...+.    ...+.+.++.+|...|+.++|+..|+...
T Consensus        68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521        68 YLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            344555666666666666666666554332    22455555666666666666666666655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.50  E-value=0.0048  Score=38.82  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ++.++++.+|...|+.++|+..++.+..+||+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478899999999999999999999999899873

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.48  E-value=0.032  Score=51.93  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC------------------hHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR------------------HADCIALYKQ  231 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq------------------~ekAIALCq~  231 (344)
                      ..|..|...|..|+|..|+..++.++...|.+ +.-..+...+++++...|.                  ..+|+..++.
T Consensus        71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~  149 (243)
T PRK10866         71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK  149 (243)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence            47889999999999999999999999988865 4448889999988766552                  3689999999


Q ss_pred             HHhhCCCHHHHHHHHHHHhhh
Q 019243          232 LESNHPSKNIRRQAADLRYIL  252 (344)
Q Consensus       232 L~~~HPd~qVRqQAK~LLyIL  252 (344)
                      |..++|+.+-...|+..|..|
T Consensus       150 li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866        150 LVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             HHHHCcCChhHHHHHHHHHHH
Confidence            999999999999998866655

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.45  E-value=0.016  Score=57.46  Aligned_cols=66  Identities=23%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|..++.+|+|.+|+..|..++...|.    ..++++.++.+|...|+.++|+..++.+...+|+
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   88 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKALSLGYP   88 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            34677777888888888888888887764333    4577777888888888888888887777745554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.42  E-value=0.036  Score=54.10  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|..||..|+|..|+++|..++...|.+    ..+.+.++.||...|+.++|+..|+.+....|+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            46778999999999999999999999876653    467889999999999999999999998856664

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=96.29  E-value=0.011  Score=43.02  Aligned_cols=43  Identities=21%  Similarity=0.171  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243          209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (344)
Q Consensus       209 QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL  252 (344)
                      ++-||.||...|+.+.|..+-+.+. .++++..+..|+.||.-|
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~~l   44 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLAQL   44 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC
Confidence            5779999999999999999999999 899999999999998643

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.27  E-value=0.043  Score=47.15  Aligned_cols=74  Identities=24%  Similarity=0.336  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ...+...+..|...+..|+|.+|+.+|+.+++..+.. ..-..+...++.+|...|+.++|+..+++....+|+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            3455678999999999999999999999998765432 2235788999999999999999999999888667654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.26  E-value=0.031  Score=57.21  Aligned_cols=70  Identities=20%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +.+.|....+.|..+|..|+|..||..++.++...|.     ......++.||...|+.++||..|.......|+
T Consensus       123 ~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~  192 (615)
T TIGR00990       123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPD  192 (615)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence            3445667888899999999999999999999987763     246778899999999999999999988855554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.21  E-value=0.034  Score=53.61  Aligned_cols=70  Identities=20%  Similarity=0.109  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+.++..++.|..-|++|+|.+|-..||+|++    +.|-.--++..+|..|+..|+++.|-.-|++-.+-+|+
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~  101 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence            34566789999999999999999999999999    44455678999999999999999999999987656665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.15  E-value=0.0098  Score=45.37  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ  231 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~  231 (344)
                      -.|..|...|..|+|.+|+++|.. ....+    ....+++.++.||...|+.++||...+.
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDP----SNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            466789999999999999999988 33222    2268888999999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.13  E-value=0.17  Score=45.63  Aligned_cols=67  Identities=19%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKA-YGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aA-LerG~--Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|... +..|+  |.+|+++|+.++...|.+    ..+.+.|+++|...|+.++||+.++.+....|.
T Consensus       107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~----~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANE----VTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            44556667654 57677  699999999999866653    578999999999999999999999998745544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.11  E-value=0.047  Score=52.88  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      +...|=.|+.-|.+|+|..|...|..+....|.+ +---++-+=|+++....|++++|-+.++++.+++|+..-.+.|+.
T Consensus       178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            3456778999999999999999999998877754 445788899999999999999999999999999999999999987


Q ss_pred             HHh
Q 019243          248 LRY  250 (344)
Q Consensus       248 LLy  250 (344)
                      .+.
T Consensus       257 ~~~  259 (262)
T COG1729         257 ALK  259 (262)
T ss_pred             HHh
Confidence            663

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.91  E-value=0.17  Score=41.74  Aligned_cols=65  Identities=23%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+++|+.++...|.    ...+...++.+|...|+.++|+.+++......|+
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQ----RPESLLELAELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4455677888888888888888888876543    2456778888888888888888888887633343

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.78  E-value=0.02  Score=39.61  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      .+.+.|+.+|...|+.++|+.+++.+.+.||+.-
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            4678999999999999999999999998999753

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.68  E-value=0.074  Score=57.19  Aligned_cols=77  Identities=10%  Similarity=-0.086  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      +...+..|....+.|+|.+|+++++.+++..|    ---+++++++.+++-.|+.++|.+.|+... ..-.+.+|+-+++
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~-~~~~~~~~~~~~~  228 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTRRGALWRARDVLQAGL-DAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhhCcchHHHHHH
Confidence            66788899999999999999999999998333    335899999999999999999999999998 5666777876766


Q ss_pred             HH
Q 019243          248 LR  249 (344)
Q Consensus       248 LL  249 (344)
                      +-
T Consensus       229 ~~  230 (694)
T PRK15179        229 LV  230 (694)
T ss_pred             HH
Confidence            53

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.67  E-value=0.046  Score=58.73  Aligned_cols=63  Identities=10%  Similarity=0.038  Sum_probs=47.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +.-+....++|+|.+|+...+.++.    ..|....+++.+++|++..|++++|+++|+.+...||+
T Consensus       124 ~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        124 ILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            3344555555666666666666555    33445689999999999999999999999999977877

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.65  E-value=0.053  Score=53.11  Aligned_cols=61  Identities=23%  Similarity=0.219  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+-.|..++..|+|++|.++||.+++..|.     ...-++|+.+|++.|++++|..+|++=.
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456778899999999999999999999987665     3455799999999999999999998653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.59  E-value=0.06  Score=50.30  Aligned_cols=70  Identities=24%  Similarity=0.281  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      ...+..|...+.+|+|.+|+++|+.+....|.+   -..+...|+.+|...|+.++|+.+++.+...+|+..+
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~  284 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQDPEY---LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL  284 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence            345667788888888888888888887754431   1355667778888888888888888887756777644

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.54  E-value=0.09  Score=47.45  Aligned_cols=64  Identities=8%  Similarity=0.067  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ++.+..|.-|-..+++|+|..|..+|+.+|..-|-+    ..-=|.|+++|++.|+.++||..|..-.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~----~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS----FDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345567888888888888888888888877754432    2445667777777777777777776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.46  E-value=0.078  Score=59.05  Aligned_cols=70  Identities=19%  Similarity=0.149  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .+..-.|..|...+.+|+|..|+..|+.+++..|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus        42 ~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n  111 (987)
T PRK09782         42 FVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD  111 (987)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            445567889999999999999999999998877664    6788999999999999999999999999677643

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.45  E-value=0.1  Score=53.99  Aligned_cols=66  Identities=17%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H  236 (344)
                      ...+..|.+.+..|+|.+||+.|+.+++..|.+ .....+...++.||...|+.++|++.++.-. ..
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr~dEAla~LrrAL-el  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNP-DEAQAAYYNKACCHAYREEGKKAADCLRTAL-RD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh
Confidence            356778999999999999999999999976642 2122458999999999999999999999988 44

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.32  E-value=0.14  Score=47.42  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..+..|...+++|+|.+|+++|+.++...+............++.+|...|+.++|+.+++++...+|
T Consensus       150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            34556888889999999999999988876654445556666788999999999999999988753344

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.27  E-value=0.13  Score=48.53  Aligned_cols=69  Identities=16%  Similarity=0.079  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +..-+..|...+..|+|..|++.|+.+++..|.    ...+...++.+|...|+.++|+..|+.....+|+.-
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            445678899999999999999999999986554    356889999999999999999999999887888754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.27  E-value=0.16  Score=53.51  Aligned_cols=66  Identities=15%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..+..|...+.+|+|.+|+..|+.++...|.    ...+...|+.+|...|+.++|++.|+.+...+|+.
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3445567777777777777777777765433    34566666777777777777777776666555553

>TIGR00540 hemY_coli hemY protein

Probab=95.24  E-value=0.25  Score=48.42  Aligned_cols=79  Identities=18%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR  249 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~LL  249 (344)
                      .+-+|+.|.++|+|..|.++|+.+.+..|.+.   ..+++..+..+...|+.++|++..+.+...+| ++.+.+....+.
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~  197 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAY  197 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34557777888888888888887765443321   13456667777888888888888888777777 455555555554


Q ss_pred             hhh
Q 019243          250 YIL  252 (344)
Q Consensus       250 yIL  252 (344)
                      .-.
T Consensus       198 ~~~  200 (409)
T TIGR00540       198 IRS  200 (409)
T ss_pred             HHH
Confidence            433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.97  E-value=0.13  Score=56.46  Aligned_cols=71  Identities=13%  Similarity=0.222  Sum_probs=40.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (344)
Q Consensus       175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL  252 (344)
                      |......|+|..||++|+++++..|.+    ..+.+.|+++|...|+.++|+..++.+.+..|+  .+.. .-+.|+.
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n----~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~  179 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTN----PDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLN  179 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHH
Confidence            444555566666666666666655554    244456666666666666666666666644333  3332 4445554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.96  E-value=0.43  Score=48.94  Aligned_cols=61  Identities=25%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      .+-..+..|.-+|+++.|++|-.+||.++..-+.     ..--.|++-||++.|+.++|-.+.+.=
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-----~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-----ASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-----hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3557888999999999999999999999986665     677899999999999999998877653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.82  E-value=0.18  Score=56.16  Aligned_cols=63  Identities=25%  Similarity=0.303  Sum_probs=55.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..|..++.+|+|.+|+..|+.++...|.+    ..+...|+.+|...|+.++|+..++......|+.
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~  336 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKD----SEALGALGQAYSQQGDRARAVAQFEKALALDPHS  336 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            34899999999999999999999976643    6889999999999999999999999988566754

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.79  E-value=0.094  Score=33.16  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~  200 (344)
                      +.-+..|...+..|+|.+|++.++.++...|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45677788888888888888888888876654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.77  E-value=0.19  Score=53.55  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L  248 (344)
                      ...+..|.....+|+|.+|++.|+.++...|.+    ..+.+.+++++.+.|+.++|.++.+.+.+.+|+.-.-+.=++.
T Consensus       394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~----~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRN----INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            355666777778888888888888887766543    3467777778888888888888888888788877776666666


Q ss_pred             HhhhcCCCCC
Q 019243          249 RYILQAPKLK  258 (344)
Q Consensus       249 LyILEAPkLk  258 (344)
                      +.+=.-|.|.
T Consensus       470 ~~~~~~~~l~  479 (765)
T PRK10049        470 RDVHHMAELR  479 (765)
T ss_pred             HHhccCceEE
Confidence            6665556553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=94.73  E-value=0.24  Score=44.58  Aligned_cols=68  Identities=15%  Similarity=0.125  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCC--hHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNR--HADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatA-YeA~Gq--~ekAIALCq~L~~~HPd~  239 (344)
                      ++.-+..|...+..|+|..|+..++.++...|.    ..++...+++| |...|+  .++|+.++++..+.+|+.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence            445777899999999999999999999997764    46788889998 478888  599999999999778754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.65  E-value=0.3  Score=41.69  Aligned_cols=63  Identities=21%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+..|-..-.-|+|.+|+.+|+..+...|. ....+.++..+++++...|+.++|+.++-.+.
T Consensus        40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   40 ALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4677888888999999999999999987754 34678999999999999999999999987755

>TIGR00540 hemY_coli hemY protein

Probab=94.63  E-value=0.28  Score=48.16  Aligned_cols=60  Identities=12%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H  236 (344)
                      +..++.++.+|+|.+|.+.|+...+..|.+    ..+..+++.+|...|+.++|+.+.+.|. ++
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~----~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~  216 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRH----KEVLKLAEEAYIRSGAWQALDDIIDNMA-KA  216 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hc
Confidence            335888999999999999999998866543    3789999999999999999999999999 55

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.58  E-value=0.28  Score=44.79  Aligned_cols=78  Identities=21%  Similarity=0.097  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR  249 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~LL  249 (344)
                      ....+-..++.|+|.++.+.|+.+....+.+.    .+...++.||...|+.++|+..++++.+.+| ||.+.-.=..+|
T Consensus       183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDP----DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC----CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH----HHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            44456677889999998888888877664433    3567889999999999999999999997788 677776655555


Q ss_pred             hhh
Q 019243          250 YIL  252 (344)
Q Consensus       250 yIL  252 (344)
                      ...
T Consensus       259 ~~~  261 (280)
T PF13429_consen  259 EQA  261 (280)
T ss_dssp             T--
T ss_pred             ccc
Confidence            443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.56  E-value=0.46  Score=52.96  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ....|..++.+|+|.+|++.|+.++...|.+    ..+.+.|+.+|...|+.++|+++++.+...+|+.
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND  528 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            3457888899999999999999999876653    4688999999999999999999999998668854

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=94.43  E-value=0.22  Score=51.12  Aligned_cols=66  Identities=17%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+..|+|.+|+..|+.++...|.    ...+.+.|+.+|...|+.++|+..|+.....+|+
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            34556677777777777777777777775543    2455667777777888888888887776645665

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=94.36  E-value=0.2  Score=52.75  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      ..+..|..++.+|+|.+|++.|+.++...|.    ...+.+.++.+|...|+.++|++.++.+...+|++..
T Consensus       112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~  179 (656)
T PRK15174        112 DVLLVASVLLKSKQYATVADLAEQAWLAFSG----NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD  179 (656)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence            3566688888899999999999998886554    3457777888889999999999888887656776543

>PRK12370 invasion protein regulator; Provisional

Probab=94.25  E-value=0.24  Score=50.73  Aligned_cols=66  Identities=11%  Similarity=0.086  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..+..|...+.+|+|.+|++.|+.+++..|.+    ..+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            34456778889999999999999999876543    4577889999999999999999999988677764

>PRK15331 chaperone protein SicA; Provisional

Probab=94.22  E-value=0.15  Score=46.53  Aligned_cols=85  Identities=13%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH---------------
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYK---------------  230 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq---------------  230 (344)
                      ++.+..|..|-..|.+|+|..|..+|.-.|-.-+-+..    --|.|+.+|+..|+.++||.+|-               
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            45667899999999999999999999888875554433    34777777777777777776543               


Q ss_pred             -------------------HHHhhCCCHHHHHHHHHHHhhhcC
Q 019243          231 -------------------QLESNHPSKNIRRQAADLRYILQA  254 (344)
Q Consensus       231 -------------------~L~~~HPd~qVRqQAK~LLyILEA  254 (344)
                                         .-..++-+.+++++|+.+|..|..
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence                               222245577888888888887754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.17  E-value=0.15  Score=54.58  Aligned_cols=68  Identities=25%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCCC-chH-----HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTI-----IPRPTF-FGG-----EIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~-----~~~~S~-lGG-----EaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      +-++.|..+-..+++|+|.+|+++|+.+...     ....+. .+.     -|++.|+-+|+-.|++++|.++|..+.+
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~  252 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK  252 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            4678899999999999999999999999322     222222 333     3677889999999999999999998883

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.16  E-value=0.26  Score=52.57  Aligned_cols=64  Identities=17%  Similarity=-0.027  Sum_probs=57.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +-.|.....+|++.+|++.|+.++...|.+    .++++.++++|...|+.++|+.+|+.....+|+.
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN----QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            456778889999999999999999977665    4799999999999999999999999999778885

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.08  E-value=0.58  Score=46.61  Aligned_cols=61  Identities=21%  Similarity=0.280  Sum_probs=35.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      |...+..|+|.+|++.++.++...|.    ...+...++.+|...|+.++|+.+++++...+|+.
T Consensus       743 ~~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  803 (899)
T TIGR02917       743 HRALLASGNTAEAVKTLEAWLKTHPN----DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN  803 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            33344455555555555555543332    23566666777777777777777777766556553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.95  E-value=0.24  Score=45.91  Aligned_cols=63  Identities=22%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..-.|...+.+|+|.+|++.++.+++..|.+    ..+...++.+|...|+.++|+.+++......|
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3456778899999999999999999977664    46778899999999999999999998773443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.94  E-value=0.72  Score=45.29  Aligned_cols=61  Identities=13%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      -.++.++.+|+|.+|++.++.+.+..|.+    ..+..+++.+|.+.|+.++|+.++..|.+..+
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRH----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            44889999999999999999988865543    48889999999999999999999999995444

>PRK12370 invasion protein regulator; Provisional

Probab=93.92  E-value=0.36  Score=49.51  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H  236 (344)
                      +...+..|...+..|+|.+|+++|+.++...|.+.    .+.++++.+|...|+.++|++.++.+...+
T Consensus       372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----AAGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            34567889999999999999999999999777632    334455555666889999999998876443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.65  E-value=0.42  Score=52.50  Aligned_cols=79  Identities=15%  Similarity=0.080  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L  248 (344)
                      ...+-.+....+.|++.+|++.++.+....|.     ....+.++-.|.+.++..+||..++++...+|+.  .+-...+
T Consensus       137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n--~e~~~~~  209 (822)
T PRK14574        137 DLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS--EEVLKNH  209 (822)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence            34455567788999999999999998876554     2223556666777888878999999999776642  3333445


Q ss_pred             HhhhcC
Q 019243          249 RYILQA  254 (344)
Q Consensus       249 LyILEA  254 (344)
                      ..+|..
T Consensus       210 ~~~l~~  215 (822)
T PRK14574        210 LEILQR  215 (822)
T ss_pred             HHHHHH
Confidence            555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=93.45  E-value=0.62  Score=43.94  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      ++.-+..|......|++.+|+..|..+++..|.+    ..+...++.+|...|+.++|+..++......|+..
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4458888999999999999999999999976543    58889999999999999999999999885677653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.43  E-value=0.33  Score=50.43  Aligned_cols=73  Identities=18%  Similarity=0.147  Sum_probs=62.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy  250 (344)
                      ..|..++.+|+|.+|++.|+.+++..+  +   ..+-+.+..+|.-.|+.++|+..|++-..-.|...+.-|.+.+.+
T Consensus       425 ala~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f  497 (517)
T PRK10153        425 ILAVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF  497 (517)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence            357888899999999999999999775  2   478999999999999999999999776657888888888887755

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.38  E-value=0.65  Score=47.24  Aligned_cols=65  Identities=23%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .++|+=-++.++.++.+-+.++|+.+|..+++..+    ....+.|.|...+.+.|++++|+...+...
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~----~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~  241 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADK----KCVRASIILGRVELAKGDYQKAVEALERVL  241 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc----cceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence            35666677778888888888888888888777433    344667777788888888888887777777

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=93.36  E-value=0.71  Score=39.68  Aligned_cols=62  Identities=18%  Similarity=0.321  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh--------------HHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH--------------ADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~--------------ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+.+++.++...|.+    ..+...++.+|...|+.              ++|+.+++...
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~  147 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI  147 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence            3457888999999999999999999999976543    45667788899888873              55666666555

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.18  E-value=0.39  Score=38.34  Aligned_cols=77  Identities=12%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCc-----hHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCHHHHHHHHH
Q 019243          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFF-----GGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRRQAAD  247 (344)
Q Consensus       176 ~aALerG~Y~qAIelLE~a~~~~~~~S~l-----GGEaQmwLatAYeA~Gq~ekAIALCq~L~---~~HPd~qVRqQAK~  247 (344)
                      ..++..|+|..|++.|..+.+....+...     ..-+-+.++..+...|+.++|+..++.-.   ..+.|...=.+|-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~   85 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS   85 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            56899999999999999988765543332     24567889999999999999998887654   23445555566666


Q ss_pred             HHhhh
Q 019243          248 LRYIL  252 (344)
Q Consensus       248 LLyIL  252 (344)
                      .++.|
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            65555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.16  E-value=0.18  Score=31.53  Aligned_cols=32  Identities=25%  Similarity=0.508  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP  201 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~  201 (344)
                      ..|..|...+..|+|.+|++.|+.+++..|.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            46889999999999999999999999988853

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.12  E-value=0.74  Score=41.64  Aligned_cols=78  Identities=19%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCHHHHHHHHHH
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH----PSKNIRRQAADL  248 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H----Pd~qVRqQAK~L  248 (344)
                      -.|...=.+|+|.+||..+..+....+ +   ..+.-..++.||-..|+.+.|+..-+.-...|    -+.+|+++|+.+
T Consensus        74 gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~  149 (157)
T PRK15363         74 RLGECCQAQKHWGEAIYAYGRAAQIKI-D---APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKM  149 (157)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCC-C---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence            345555678999999999999888554 2   34677889999999999999877766555455    689999999999


Q ss_pred             HhhhcC
Q 019243          249 RYILQA  254 (344)
Q Consensus       249 LyILEA  254 (344)
                      |..|.-
T Consensus       150 L~~l~~  155 (157)
T PRK15363        150 LQQLSD  155 (157)
T ss_pred             HHHhhc
Confidence            998853

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=93.09  E-value=0.63  Score=52.11  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=37.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +..|....+.|+|.+|+++|+.+++..|.    ..++...|+++|...|+.++|++.|++.....|+.
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~----~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAHKGLPD----DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            33444555566666666666666654442    23566666666666666666666666665445544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.93  E-value=2.2  Score=38.05  Aligned_cols=79  Identities=16%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR---------------HADCIALYKQL  232 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq---------------~ekAIALCq~L  232 (344)
                      .+..|..|-+-|++|+|..|+..++..+.++|.+- .-.-|.....+++.....               ..+|..--+.|
T Consensus        47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l  125 (142)
T PF13512_consen   47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL  125 (142)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence            34678899999999999999999999999988654 446788888888988887               89999999999


Q ss_pred             HhhCCCHHHHHHHHH
Q 019243          233 ESNHPSKNIRRQAAD  247 (344)
Q Consensus       233 ~~~HPd~qVRqQAK~  247 (344)
                      ..++|+.+-...|+.
T Consensus       126 v~~yP~S~ya~dA~~  140 (142)
T PF13512_consen  126 VRRYPNSEYAADARK  140 (142)
T ss_pred             HHHCcCChhHHHHHh
Confidence            999999987776654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=0.58  Score=46.51  Aligned_cols=75  Identities=21%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 019243          149 RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL  228 (344)
Q Consensus       149 rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIAL  228 (344)
                      .||+-|.++..-      ..+..+..+..+++.|+|..|-.+|..++...+.+    +.+.+.|+.||-..|+.+.|-++
T Consensus       121 qlr~~ld~~~~~------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~i  190 (304)
T COG3118         121 QLRQFLDKVLPA------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAI  190 (304)
T ss_pred             HHHHHHHHhcCh------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHH
Confidence            466667776663      12246778899999999999999999999976654    89999999999999999999999


Q ss_pred             HHHHH
Q 019243          229 YKQLE  233 (344)
Q Consensus       229 Cq~L~  233 (344)
                      ..+|-
T Consensus       191 L~~lP  195 (304)
T COG3118         191 LAALP  195 (304)
T ss_pred             HHhCc
Confidence            98876

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.50  E-value=1.9  Score=35.63  Aligned_cols=74  Identities=19%  Similarity=0.126  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL  228 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG------------------GEaQmwLatAYeA~Gq~ekAIAL  228 (344)
                      .++..+..|..+...|+-..+++.++.++......--.+                  ..+-..++.+|...|+.++|+.+
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            456677888899999999999999999998776432211                  25556678889999999999999


Q ss_pred             HHHHHhhCCCHH
Q 019243          229 YKQLESNHPSKN  240 (344)
Q Consensus       229 Cq~L~~~HPd~q  240 (344)
                      |+.+...+|..+
T Consensus        85 ~~~~l~~dP~~E   96 (146)
T PF03704_consen   85 LQRALALDPYDE   96 (146)
T ss_dssp             HHHHHHHSTT-H
T ss_pred             HHHHHhcCCCCH
Confidence            999998888754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=92.48  E-value=0.94  Score=41.42  Aligned_cols=72  Identities=21%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRR  243 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRq  243 (344)
                      ........++..|+|.++.++|+.+......  +....+-+.++..|...|+.++|+.++++....+|+ ++++.
T Consensus       112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~  184 (280)
T PF13429_consen  112 YLLSALQLYYRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN  184 (280)
T ss_dssp             ------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            3445566788899999999999997753322  233455556777889999999999999998878886 66653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.44  E-value=1.5  Score=43.04  Aligned_cols=59  Identities=27%  Similarity=0.365  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+.++..+.+|+|+.++.+|+..+...|.+.    .+...|..+|..+|+...||..|++|.
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44556677889999999999999999766543    567888999999999999999999998

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.28  E-value=2.2  Score=40.22  Aligned_cols=81  Identities=21%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC------CCCCCchH----HHHHHHHHHHHHcCChH---HHHHHHH
Q 019243          165 RATAQLMFELGQKAYGKG-MYGRAIEFLEGALTII------PRPTFFGG----EIQIWLAMAYEANNRHA---DCIALYK  230 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG-~Y~qAIelLE~a~~~~------~~~S~lGG----EaQmwLatAYeA~Gq~e---kAIALCq  230 (344)
                      ...+...|..|..++.++ +|..|+.+|+.+.+.+      ...++.+.    .+-..||+||-..|..+   +|+.+-+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            456778999999999999 9999999999999874      23455554    44567999999988754   5666777


Q ss_pred             HHHhhCCC-HHHHHHH
Q 019243          231 QLESNHPS-KNIRRQA  245 (344)
Q Consensus       231 ~L~~~HPd-~qVRqQA  245 (344)
                      .+.+.+|+ +.+.-.+
T Consensus       112 ~l~~e~~~~~~~~~L~  127 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLK  127 (278)
T ss_pred             HHHHhCCCCcHHHHHH
Confidence            78777888 5555444

It is also involved in sporulation [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.16  E-value=2.7  Score=39.42  Aligned_cols=80  Identities=21%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH-HHH
Q 019243          168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN-IRR  243 (344)
Q Consensus       168 a~~~leaG~aALer-G~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q-VRq  243 (344)
                      |+...+.|...-.. |+|..||++++.|++.+.  ..+....+.-+.++..|...|+.++||.+|+++...+-+.. .+-
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            55666667766677 899999999999998544  34455678888999999999999999999999984443332 233


Q ss_pred             HHHH
Q 019243          244 QAAD  247 (344)
Q Consensus       244 QAK~  247 (344)
                      .+++
T Consensus       194 ~~~~  197 (282)
T PF14938_consen  194 SAKE  197 (282)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            4444

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.14  E-value=1.4  Score=40.93  Aligned_cols=67  Identities=19%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~--~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .....++.|..-|..|+|..|+.+|++++.....  =..+-.++-..|..|+...|+.++.+.+|=+|.
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3557889999999999999999999999765442  256677999999999999999999999999997

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.11  E-value=0.57  Score=45.55  Aligned_cols=61  Identities=23%  Similarity=0.316  Sum_probs=52.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..|+.++..|+|..||..|-.+....|.    -+++.+.+..||+..|+.+.|-.-|.+..+-.|
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPT----DWEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCC----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            3899999999999999999999885544    478899999999999999999999988764333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=91.52  E-value=1.4  Score=37.48  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-------HcCChHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-------ANNRHADCIALYKQ  231 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYe-------A~Gq~ekAIALCq~  231 (344)
                      ...+..|...+..|+|.+|++.++.++...+..    +.....++.+|.       ..|+.+.|+..|.+
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            356788999999999999999999999864432    456667777777       88888866655543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=91.14  E-value=1.2  Score=45.43  Aligned_cols=64  Identities=23%  Similarity=0.328  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      -+...+-.|..++.+|+|..||+.||.+.++.+.   +-+++---|..||...|+.++.+..-+.-.
T Consensus       213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~---yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPE---YLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456788899999999999999999998886553   557888889999999999999876554443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.70  E-value=0.75  Score=29.40  Aligned_cols=31  Identities=29%  Similarity=0.597  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~  199 (344)
                      +.-+..|...+..|+|.+||..|+.+++.-|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4567778888888888888888888887655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=90.59  E-value=0.29  Score=54.27  Aligned_cols=69  Identities=16%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      .+++|-.+-.+|-||+|.+|.++|..++.+.|.+    .++-..|++.|+-.|++++|... -.|. .|-+|+-.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrGd~eK~l~~-~llA-AHL~p~d~  207 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRGDIEKALNF-WLLA-AHLNPKDY  207 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcccHHHHHHH-HHHH-HhcCCCCh
Confidence            4567888888999999999999999999977764    46778899999999999999753 3444 67776543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.43  E-value=0.77  Score=28.88  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ++-..++.+|...|+.++|+..|++..+.+|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            56788999999999999999999998866664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=89.85  E-value=1.6  Score=45.76  Aligned_cols=63  Identities=19%  Similarity=0.141  Sum_probs=51.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      ......+.|+|.+|+++|+.....+..    -.-+.-..|..|...|+.++|..+|+.|..++|+.-
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~I~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQILD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhhCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            344557889999999999997764443    135667789999999999999999999998888753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.79  E-value=2.4  Score=45.09  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +.++..-..|..+|..|+|+.||.++..++...|..-.+++    --|.||-..|....|++-|+.-..-+|+.
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs----NRAac~~kL~~~~~aL~Da~~~ieL~p~~  425 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS----NRAACYLKLGEYPEALKDAKKCIELDPNF  425 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence            34666777799999999999999999999987766555554    35778888899999988887766455553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.25  E-value=1.8  Score=35.70  Aligned_cols=63  Identities=19%  Similarity=0.084  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY  229 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALC  229 (344)
                      -++.+.++.|+..|.+-+..+||.....++.....+ +.-=.+-=+|++||+-.|+..++++..
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999866542 222255558999999999999998764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=89.13  E-value=1.1  Score=38.98  Aligned_cols=57  Identities=28%  Similarity=0.406  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243          145 EKRMRVRRELEKVAKE--------------QAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP  201 (344)
Q Consensus       145 ~~~~rv~~~le~~a~e--------------~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~  201 (344)
                      ++|.+|+++..+.++.              .++..+-+....+.|+..+.+|+|..|+.+|-.|+.-++.+
T Consensus        26 ~frkkL~~rrk~~~~~~~~~~~~~~~~~~d~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP   96 (121)
T PF02064_consen   26 DFRKKLRERRKKQAKAQEQAKSEKLPDPNDPEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP   96 (121)
T ss_dssp             -----------------------SSSHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccccCcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence            4566666655555543              23333447788999999999999999999999999988763

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.61  E-value=0.9  Score=36.85  Aligned_cols=52  Identities=13%  Similarity=0.111  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR  221 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq  221 (344)
                      ....|..+...+..|+|.+|++.|-.++...+.  -..+.++-.|+..+...|.
T Consensus        22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~--~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   22 LDARYALADALLAAGDYEEALDQLLELVRRDRD--YEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT--CCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--ccccHHHHHHHHHHHHcCC
Confidence            345555566666666666666655555543322  2234444445555554444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=87.88  E-value=5.9  Score=38.24  Aligned_cols=70  Identities=20%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~-~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      .++-.+.+-|.-|+...|...||...+..| ..||-|   -+.++++|.+.|+..+|-+-.+.+.+..|+++-|
T Consensus       126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~---~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar  196 (251)
T COG4700         126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG---HLLFARTLAAQGKYADAESAFEVAISYYPGPQAR  196 (251)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH
Confidence            344444455555555555555555554433 223222   3556666666666666666666666555666544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=87.39  E-value=3  Score=42.40  Aligned_cols=77  Identities=16%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      +......+...+.+|+|..|++.+..++...|.    --+.-..||.+|...|+.++|+...-    .+|...-+.  +.
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~----~f~~W~~La~~Yi~~~d~e~ALlaLN----s~Pm~~~~~--k~  303 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPS----EFETWYQLAECYIQLGDFENALLALN----SCPMLTYKD--KY  303 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhcCCHHHHHHHHh----cCcCCCCcc--ch
Confidence            556677888999999999999999999986554    34677779999999999999996554    455443333  33


Q ss_pred             HHhhhcC
Q 019243          248 LRYILQA  254 (344)
Q Consensus       248 LLyILEA  254 (344)
                      .+..+..
T Consensus       304 ~~~~~~p  310 (395)
T PF09295_consen  304 KLKRPVP  310 (395)
T ss_pred             hhhcCCC
Confidence            4444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.26  E-value=2.1  Score=37.85  Aligned_cols=53  Identities=26%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD  224 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ek  224 (344)
                      +...++.++++|..|+|+-|.+++.-++..-|.    .-+++-.++.||.+.|...+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~----n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD----NEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHhcc
Confidence            457899999999999999999999999885553    24799999999988887654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.92  E-value=3.2  Score=41.44  Aligned_cols=63  Identities=27%  Similarity=0.286  Sum_probs=48.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      +.+..+=|+|..||+-+|.++.+-|..|+.++    =|-+||-+.|+.++||.-|+.-.--.|+-++
T Consensus       122 AAAy~~Lg~~~~AVkDce~Al~iDp~yskay~----RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  122 AAAYSKLGEYEDAVKDCESALSIDPHYSKAYG----RLGLAYLALGKYEEAIEAYKKALELDPDNES  184 (304)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcChHHHHHHH----HHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence            44556778888888888888886666555554    4678999999999999998875536677664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.77  E-value=9.2  Score=34.90  Aligned_cols=82  Identities=15%  Similarity=-0.057  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      ++..+=.|...+.+|+|..|+.+|+.+.+..    +...-++-.|+.|+...|+..==.--.+-|. ..+|++.+.=.+.
T Consensus        44 ~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~----~~~p~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv~~  118 (160)
T PF09613_consen   44 PELDLFDGWLHIVRGDWDDALRLLRELEERA----PGFPYAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALVRA  118 (160)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC----CCChHHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHHHH
Confidence            4556667999999999999999999976633    3445567788888888887654333334455 7889988888888


Q ss_pred             HHhhhcC
Q 019243          248 LRYILQA  254 (344)
Q Consensus       248 LLyILEA  254 (344)
                      |+.+=+-
T Consensus       119 Ll~~~~~  125 (160)
T PF09613_consen  119 LLARADL  125 (160)
T ss_pred             HHHhccc
Confidence            8776543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.63  E-value=2.1  Score=32.05  Aligned_cols=42  Identities=19%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhc
Q 019243          209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ  253 (344)
Q Consensus       209 QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILE  253 (344)
                      -.+||.||...|+.++|...|..|....|+-   +||+.|...++
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~   45 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence            4678999999999999999999998777775   47777776664

>PRK15331 chaperone protein SicA; Provisional

Probab=85.67  E-value=2.1  Score=39.22  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=32.5

Q ss_pred             HHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 019243          172 FELGQKAY--GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI  226 (344)
Q Consensus       172 leaG~aAL--erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAI  226 (344)
                      |=.|++|.  .+|+|..||..+--+..... ++|.   .-+.++.||.+.|+.+.|+
T Consensus        73 Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~---p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         73 YTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYR---PVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCC---ccchHHHHHHHhCCHHHHH
Confidence            33466665  46899999999887665322 2221   1345677777888877664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=85.58  E-value=6.2  Score=37.00  Aligned_cols=87  Identities=18%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGG-EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGG-EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      .+...+.|....+.|+|.+||++++.+...+-.+  ++.+. +.-+-.+.+|-..|+...|-..+......+|...-.+.
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E  234 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE  234 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            4556788999999999999999999988754322  33333 23356788999999999999999988766776666666


Q ss_pred             HHHHHhhhcC
Q 019243          245 AADLRYILQA  254 (344)
Q Consensus       245 AK~LLyILEA  254 (344)
                      .+=+-.+|+|
T Consensus       235 ~~~~~~l~~A  244 (282)
T PF14938_consen  235 YKFLEDLLEA  244 (282)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666666

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=85.44  E-value=2  Score=27.19  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~  199 (344)
                      +.-+..|....+.|+|..|+..|+.+++..|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567778888888888888888888887554

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=85.33  E-value=14  Score=36.18  Aligned_cols=88  Identities=25%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA  245 (344)
                      ..|...+..|.--++||.|-.||--++.+++. -+.|+.--++-.+|.-||.+.|-+++|-...+-|....|+.+   |.
T Consensus       165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~---~~  240 (254)
T COG4105         165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ---WY  240 (254)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc---ch
Confidence            45778889999999999999999999999988 556777789999999999999999999999999996677776   65


Q ss_pred             HHHHhhhcCCCC
Q 019243          246 ADLRYILQAPKL  257 (344)
Q Consensus       246 K~LLyILEAPkL  257 (344)
                      +.=-.++..+.|
T Consensus       241 ~~~~~~~~~~~~  252 (254)
T COG4105         241 KDAYRLLQRGGL  252 (254)
T ss_pred             hhhhhccccccc
Confidence            554444444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=85.20  E-value=2.3  Score=30.47  Aligned_cols=33  Identities=30%  Similarity=0.585  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~  200 (344)
                      ....+..|...+.+|+|.+|+++|+.+++..|.
T Consensus        31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen   31 PEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            556888999999999999999999999987764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=84.91  E-value=2.5  Score=29.09  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP  201 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~  201 (344)
                      ..+..|......|+|.+|++.|+.+++..|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            35677899999999999999999999988764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=83.66  E-value=1.3  Score=29.49  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHH
Q 019243          210 IWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       210 mwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      ..|+.+|...|+.++||.+|++.
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            35889999999999999999984

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.60  E-value=1.6  Score=27.60  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 019243          207 EIQIWLAMAYEANNRHADCIALYK  230 (344)
Q Consensus       207 EaQmwLatAYeA~Gq~ekAIALCq  230 (344)
                      .+.+.|+.+|...|+.++|.++++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367788888888888888888775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=83.10  E-value=9.7  Score=31.47  Aligned_cols=54  Identities=26%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 019243          163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN  220 (344)
Q Consensus       163 ~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G  220 (344)
                      .+...++..+..|..|+..|+|..|-..+..+....+    .-.-..+.-|.|=+.+|
T Consensus        54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~----~~~l~~L~AA~AA~~~g  107 (108)
T PF07219_consen   54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSD----NPLLNYLLAARAAQAQG  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcC
Confidence            3445567899999999999999999999999876532    22334444455555554

These are membrane protein involved in a late step of protoheme IX synthesis [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=82.68  E-value=5.2  Score=42.20  Aligned_cols=61  Identities=25%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .|...++.+++.+|++.|..++...|..    .=++|-++.||...|+.++||.+-+.++...|+
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~  406 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALDPNS----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE  406 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence            4666778888888888888877766654    346777888888888888888877777744443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=82.34  E-value=2.4  Score=44.37  Aligned_cols=64  Identities=22%  Similarity=0.182  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..-+.|-.||.+|.|+.|-+....++..-|.+...-...=+-.++++-..|+..+||+-|..-.
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            3445689999999999999999999999998888888888888999999999999999998765

>smart00028 TPR Tetratricopeptide repeats

Probab=81.97  E-value=2.9  Score=23.39  Aligned_cols=26  Identities=35%  Similarity=0.627  Sum_probs=15.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTI  197 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~  197 (344)
                      +..|...+..|+|..|+..+..++..
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            44556666666666666666665543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.91  E-value=21  Score=35.83  Aligned_cols=69  Identities=19%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (344)
Q Consensus       164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H  236 (344)
                      -.+.|+..=..|=.+++.++|..||.....|+...|.+--++-    --|-||...|+.+.||.=|+.-+.-.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyyc----NRAAAy~~Lg~~~~AVkDce~Al~iD  145 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYC----NRAAAYSKLGEYEDAVKDCESALSID  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHH----HHHHHHHHhcchHHHHHHHHHHHhcC
Confidence            3445666667899999999999999999999998886544433    24779999999999999999988333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.81  E-value=13  Score=33.85  Aligned_cols=81  Identities=17%  Similarity=0.088  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL  249 (344)
                      ..+=.|-..+.+|+|.+|+..|..+.+..+ ++   +-..-.++.|+.+.|+-.==.--..-|. ..++++...-.+.|+
T Consensus        46 ~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~-~~---p~~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~al~  120 (153)
T TIGR02561        46 LDMFDGWLLIARGNYDEAARILRELLSSAG-AP---PYGKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRALL  120 (153)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHhhhccCC-Cc---hHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHHHh
Confidence            344568889999999999999999766332 22   4556678888888888665444455566 788888888888777


Q ss_pred             hhhcCC
Q 019243          250 YILQAP  255 (344)
Q Consensus       250 yILEAP  255 (344)
                      .+++.|
T Consensus       121 g~~~~~  126 (153)
T TIGR02561       121 GAQQPP  126 (153)
T ss_pred             ccccCC
Confidence            555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.70  E-value=18  Score=35.46  Aligned_cols=57  Identities=26%  Similarity=0.376  Sum_probs=40.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcCCCC-----CCCcccccccCCCCCC
Q 019243          213 AMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKL-----KISQEEMVTIPLIGSS  273 (344)
Q Consensus       213 atAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEAPkL-----krp~ew~veIPdL~~~  273 (344)
                      |-||...-..++|+.=|++++  ..||..+ +|++-..-|. |++     +-..+-|..+-+|++.
T Consensus       175 Aeayek~ek~eealeDyKki~--E~dPs~~-ear~~i~rl~-~~i~ernEkmKee~m~kLKdlGN~  236 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKIL--ESDPSRR-EAREAIARLP-PKINERNEKMKEEMMEKLKDLGNF  236 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHH--HhCcchH-HHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            789999999999999999998  4577766 7777655553 222     3334556667777643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=81.60  E-value=4.3  Score=42.13  Aligned_cols=64  Identities=17%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..++.++++.+.+.|-.|++--|.++..-|..++.--++.-.+.+||..-|+.-+||.-|....
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL  334 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL  334 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence            3778888888888888888888888876666555555556667777777778888887777766

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=80.66  E-value=5.6  Score=41.93  Aligned_cols=58  Identities=22%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243          174 LGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ  231 (344)
Q Consensus       174 aG~aALerG~Y~qAIelLE~a~~~~----~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~  231 (344)
                      .|..-+..++|.+||-++++|++..    ...++.-+-+-.-|+.+|...|+..+|..+|+.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~  308 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER  308 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            5777788999999999999999744    477888999999999999999999999888875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=80.45  E-value=8.4  Score=39.80  Aligned_cols=56  Identities=18%  Similarity=0.039  Sum_probs=32.6

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +-+.|..||++++.+++.-|.|    ..+-+--.+||.+.|+.+.|+...++..+-.|+.
T Consensus       269 Kl~~~~~Ai~~c~kvLe~~~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  269 KLKEYKEAIESCNKVLELDPNN----VKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            3456666666666666644332    3555666666666666666666666655444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=80.26  E-value=16  Score=29.67  Aligned_cols=63  Identities=22%  Similarity=0.156  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH-HHHHhhhcC
Q 019243          187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA-ADLRYILQA  254 (344)
Q Consensus       187 AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA-K~LLyILEA  254 (344)
                      .|+-|+..++..|.    -.++++.|+.+|...|+.++|+..+-.+.+++++.. ...| +.||.||+.
T Consensus         7 ~~~al~~~~a~~P~----D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~   70 (90)
T PF14561_consen    7 DIAALEAALAANPD----DLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFEL   70 (90)
T ss_dssp             HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHH
Confidence            46778888885554    459999999999999999999999999997776552 2222 335555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 101 WEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKE 160
           W +E R+R++E++     +   +E + KA++D  E   ++  + EK     R  +K   +
Sbjct: 90  WREEQRKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147

Query: 161 QAE 163
           Q +
Sbjct: 148 QPD 150

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 104 EMRRRVKEIEEMREL-EKKAEELQSK-AEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161
           +  R  +E E +R+  E++ + LQ   A     E E +E+ +++     +R+ E+V K +
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 162 AERRATAQ 169
              R   +
Sbjct: 136 INNRIADK 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 77/250 (30%)

Query: 78  VDFDAGSSDEENG-----NGNGEKEEYDWE--KEMRRRV---KEIEEMRE---------- 117
           +DF+ G    +         +   + +D +  ++M + +   +EI+ +            
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 118 ----LEKKAEE----------------LQSKAEEDDSESEAKEETEEEKRMRVRRELEKV 157
               L  K EE                L S  + +  +         E+R R+  + +  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 158 AKEQAERRATAQLMFELGQKAYG---------KGMYGR-----AIEFLEGALTIIPRPTF 203
           AK    R    Q   +L Q              G+ G      A++              
Sbjct: 127 AKYNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQCK 179

Query: 204 FGGEIQIWLAMAYEANNRHADCI----ALYKQLESN-----HPSKNIRRQAAD----LRY 250
              +I  WL +     N     +     L  Q++ N       S NI+ +       LR 
Sbjct: 180 MDFKI-FWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 251 ILQAPKLKIS 260
           +L++   +  
Sbjct: 237 LLKSKPYENC 246

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%)

Query: 95  EKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRREL 154
           ++E    + E R   +  +    LE K  +LQ K +E + E ++  E      +    E 
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 155 EKVAKEQAERRATAQ 169
           EK+  +    R + +
Sbjct: 963 EKLRSDVERLRMSEE 977

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.19
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.18
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.0
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.99
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.98
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.98
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.91
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.9
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.9
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.87
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.86
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.82
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.81
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.81
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.68
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.63
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.54
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.48
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.43
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.4
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.38
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.35
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.33
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.23
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.02
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.0
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.0
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.98
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.96
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.93
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.87
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.86
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.84
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.82
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.78
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.77
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.75
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.74
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.71
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.69
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.64
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.62
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.57
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.57
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.52
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.45
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.45
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.38
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.31
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.29
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.27
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.23
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.2
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.16
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.05
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.03
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.97
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	95.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.76
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	95.69
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.63
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	95.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.55
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.51
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.49
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	95.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.21
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	95.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	95.07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.03
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.9
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.89
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	94.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	94.41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.37
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	94.37
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	94.33
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.29
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.24
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	94.05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.89
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.56
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.28
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.14
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	93.1
4g1t_A	472	Interferon-induced protein with tetratricopeptide	92.57
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	92.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.37
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	92.13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	90.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	90.68
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.24
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	89.72
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	89.2
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.64
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	87.2
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	86.27
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	85.5
2xrh_A	100	Protein HP0721; unknown function; 1.50A {Helicobac	84.42
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	82.99
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	82.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	80.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	80.5

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.41  E-value=3.5e-06  Score=69.80  Aligned_cols=82  Identities=7%  Similarity=0.010  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      +..-+..|...+..|+|.+|++.|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+.....+|++.++++|+.
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~  145 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS  145 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            3456678999999999999999999999987753    368899999999999999999999998889999999999999


Q ss_pred             HHhhhc
Q 019243          248 LRYILQ  253 (344)
Q Consensus       248 LLyILE  253 (344)
                      +|..|+
T Consensus       146 ll~~l~  151 (151)
T 3gyz_A          146 YLDAIQ  151 (151)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.40  E-value=5.7e-06  Score=61.67  Aligned_cols=85  Identities=12%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L  248 (344)
                      ...+..|...+..|+|.+|+..|+.++...|. ++....+.++++.+|...|+.++|+..++.+...+|+......|+..
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            45678899999999999999999999987664 34457899999999999999999999999998899999988888887


Q ss_pred             HhhhcC
Q 019243          249 RYILQA  254 (344)
Q Consensus       249 LyILEA  254 (344)
                      +..+..
T Consensus       119 l~~l~~  124 (129)
T 2xev_A          119 LQSIRL  124 (129)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.19  E-value=5.3e-05  Score=54.74  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|++.++.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4567889999999999999999999999976653    5788999999999999999999999988677774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.18  E-value=1.3e-05  Score=67.39  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      ++..|..|...+.+|+|.+|+..|+.++...| .++...++.++++.+|...|+.++||..++.+...+|+..-
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            45689999999999999999999999998766 45677899999999999999999999999999888998653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.14  E-value=2.5e-05  Score=58.12  Aligned_cols=69  Identities=20%  Similarity=0.359  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..|..|...+..|+|.+|+.+|+.++...| +++...++.++++.+|...|+.++|+..|+.+...+|+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            468889999999999999999999998766 455667899999999999999999999999988788875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.02  E-value=4.6e-05  Score=64.45  Aligned_cols=72  Identities=25%  Similarity=0.342  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .++..|..|...+.+|+|.+|+.+|+.++...|. ++...++.++++.+|...|+.++|+..|+.+...+|+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            3667899999999999999999999999987654 55668999999999999999999999999999788854

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.00  E-value=6.6e-05  Score=57.71  Aligned_cols=75  Identities=24%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~---S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      +..-|+.|..+|.+|+|.+|+.+|+.|+...+..   +..-..+-..|+.||...|+.++|+.+++.+.+-.|+...-
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            4567899999999999999999999999865432   23456888999999999999999999999988677876443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.99  E-value=7.6e-05  Score=63.13  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN----------NRHADCIALYKQLESNHP  237 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~----------Gq~ekAIALCq~L~~~HP  237 (344)
                      ++..+..|...+..|+|.+||..|+.++...|. ++...++.++++.+|...          |+.++|+..|+.+...+|
T Consensus       148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            344689999999999999999999999987664 566789999999999988          888999999999998999


Q ss_pred             CHHHHHHHHHHHhhh
Q 019243          238 SKNIRRQAADLRYIL  252 (344)
Q Consensus       238 d~qVRqQAK~LLyIL  252 (344)
                      +...-..|..+|..+
T Consensus       227 ~~~~~~~a~~~l~~~  241 (261)
T 3qky_A          227 DSPLLRTAEELYTRA  241 (261)
T ss_dssp             TCTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            998888888777655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.98  E-value=6.9e-05  Score=54.45  Aligned_cols=86  Identities=15%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG---GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      +...+..|...+..|+|.+|+.+++.++...+.+....   ..+.+.++.+|...|+.++|+..++.....+|++.+...
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  117 (131)
T 1elr_A           38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK  117 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34567789999999999999999999998765332222   678899999999999999999999998878899999888


Q ss_pred             HHHHHhhhc
Q 019243          245 AADLRYILQ  253 (344)
Q Consensus       245 AK~LLyILE  253 (344)
                      ...+...+.
T Consensus       118 l~~~~~~~~  126 (131)
T 1elr_A          118 CQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.98  E-value=7.1e-05  Score=56.43  Aligned_cols=67  Identities=15%  Similarity=0.077  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ++..+..|...+.+|+|.+|++.|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4556777777777777777777777777765542    466777777777777777777777777655554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.91  E-value=9.4e-05  Score=58.07  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      |+.....|...|++|+|.+||+.|+.++...|.+    ..+-..++.+|...|+.++||..|++...-+|+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            3344556666666666666666666666654432    355566666666666666666666665534444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.90  E-value=5e-05  Score=56.84  Aligned_cols=80  Identities=19%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES---NHPSKNIRRQA  245 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~---~HPd~qVRqQA  245 (344)
                      ...+..|...+..|+|.+|+.+|+.++...|..    ..+.+.|+.+|...|+.++|+..+++...   .+++.......
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l   83 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL   83 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence            457888999999999999999999999977653    35889999999999999999999987652   35666666666


Q ss_pred             HHHHhhh
Q 019243          246 ADLRYIL  252 (344)
Q Consensus       246 K~LLyIL  252 (344)
                      ..+|..+
T Consensus        84 ~~~l~~~   90 (100)
T 3ma5_A           84 QDAKLKA   90 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6666544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.90  E-value=0.00012  Score=55.36  Aligned_cols=82  Identities=16%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA  246 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQAK  246 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+    ..+...++.+|...|+.++|+..+++....+|+ +.+....+
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4567888999999999999999999999987764    689999999999999999999999987656664 55555555


Q ss_pred             HHHhhhc
Q 019243          247 DLRYILQ  253 (344)
Q Consensus       247 ~LLyILE  253 (344)
                      -+.+-..
T Consensus       103 ai~~~~~  109 (117)
T 3k9i_A          103 AILFYAD  109 (117)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            4444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.87  E-value=0.00016  Score=58.08  Aligned_cols=83  Identities=10%  Similarity=0.044  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----HHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRR  243 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd----~qVRq  243 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+    ..+.+.++.+|...|+.++|+..++......|+    ..+++
T Consensus        55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence            3346778999999999999999999999977653    467899999999999999999999988766776    67888


Q ss_pred             HHHHHHhhhcC
Q 019243          244 QAADLRYILQA  254 (344)
Q Consensus       244 QAK~LLyILEA  254 (344)
                      .|..+|..|..
T Consensus       131 ~~~~~l~~l~~  141 (148)
T 2vgx_A          131 RVSSMLEAIKL  141 (148)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            88888877654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.86  E-value=9e-05  Score=53.59  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-IQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGE-aQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .|..|...+..|+|.+|++.|+.++...|.+    .. +.+.++.+|...|+.++|+..++.....+|+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            4678999999999999999999999976543    45 88999999999999999999999988777764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.85  E-value=7.2e-05  Score=59.17  Aligned_cols=65  Identities=22%  Similarity=0.064  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|..|+..++.++...|.    ...+-+.++.+|...|+.++|+..++.....+|+
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKREET----NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            3444566666666666666666666665433    2456666666666666666666666665545554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.82  E-value=0.00016  Score=56.51  Aligned_cols=82  Identities=10%  Similarity=0.049  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRR  243 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP----d~qVRq  243 (344)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|    ...++.
T Consensus        52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE----PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            3446778999999999999999999999976653    36788999999999999999999998775666    456777


Q ss_pred             HHHHHHhhhc
Q 019243          244 QAADLRYILQ  253 (344)
Q Consensus       244 QAK~LLyILE  253 (344)
                      .+..++..+.
T Consensus       128 ~~~~~l~~l~  137 (142)
T 2xcb_A          128 RAGAMLEAVT  137 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.82  E-value=0.00017  Score=57.16  Aligned_cols=65  Identities=14%  Similarity=0.003  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus        47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            44555666666666666666666666654432    456666666666666666666666655544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.81  E-value=0.00016  Score=56.53  Aligned_cols=80  Identities=8%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~---lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      +...+..|...+..|+|.+||+.++.++...|.+..   .-+++-.-+..+|.+.|+.++||..|++-...||++++.+.
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  121 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence            334566788889999999999999998876553322   23566777888999999999999998875557899888765


Q ss_pred             HHH
Q 019243          245 AAD  247 (344)
Q Consensus       245 AK~  247 (344)
                      -++
T Consensus       122 l~~  124 (127)
T 4gcn_A          122 VKE  124 (127)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.81  E-value=0.00017  Score=51.38  Aligned_cols=67  Identities=16%  Similarity=0.122  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|..|+.+|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            3445666666667777777777777766654432    455666666666777777777766666544543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.78  E-value=0.00034  Score=48.86  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|+.+++.++...|.+    ..+...++.+|...|+.++|+..++.....+|+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4456788999999999999999999999876543    5788899999999999999999999987667753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.71  E-value=0.00047  Score=52.58  Aligned_cols=68  Identities=13%  Similarity=0.006  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|+++++.++...|.    ...+.+.++.+|...|+.++|+..+++....+|+.
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            344566778888888888888888888876553    25677788888888888888888888877566643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.70  E-value=0.00023  Score=55.25  Aligned_cols=60  Identities=18%  Similarity=0.111  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..++...
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           53 AWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444555555555555555555555443321    2344555555555555555555555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.68  E-value=0.00037  Score=52.25  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+..|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            34455555555555555555555555543321    344555555555555555555555554433443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=0.00082  Score=50.27  Aligned_cols=67  Identities=15%  Similarity=-0.039  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|+..++.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            3445556666666777777777777666654432    456666666777777777777766666545554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.67  E-value=0.0004  Score=54.19  Aligned_cols=67  Identities=10%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+.+|+|.+|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..|+......|+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4567889999999999999999999999876643    577889999999999999999999998866665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.66  E-value=0.00034  Score=54.61  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      |....+.|..+|.+|+|.+||++++.+++..|.+    ..+-..++.+|...|+.++||..|++..
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            3345578999999999999999999999987653    5677889999999999999999999876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.65  E-value=0.00017  Score=60.20  Aligned_cols=68  Identities=24%  Similarity=0.438  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH----------------HHHHHHHcCChHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW----------------LAMAYEANNRHADCIALYKQ  231 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmw----------------LatAYeA~Gq~ekAIALCq~  231 (344)
                      +...+..|..++..|+|.+|+++|+.++...|.    ...+..+                ++.+|...|+.++|+..|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            556889999999999999999999999986543    4567888                99999999999999999999


Q ss_pred             HHhhCCCH
Q 019243          232 LESNHPSK  239 (344)
Q Consensus       232 L~~~HPd~  239 (344)
                      ....+|+.
T Consensus        80 al~~~p~~   87 (208)
T 3urz_A           80 LLQKAPNN   87 (208)
T ss_dssp             HHHHCTTC
T ss_pred             HHHHCCCC
Confidence            88788864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.64  E-value=0.00043  Score=55.32  Aligned_cols=78  Identities=17%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQA  245 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQA  245 (344)
                      .+...|..|...++.|+|..|+++|+.++...|.    ...+...|+.+|...|+.++|+..++.....+|+ +.+--.-
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445678899999999999999999999987654    3678889999999999999999999987767775 4444333


Q ss_pred             HHH
Q 019243          246 ADL  248 (344)
Q Consensus       246 K~L  248 (344)
                      -.+
T Consensus       106 a~~  108 (150)
T 4ga2_A          106 AEL  108 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.63  E-value=0.00061  Score=49.36  Aligned_cols=67  Identities=21%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ++...+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..|+.....+|
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   69 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            45677889999999999999999999999876543    57889999999999999999999999874444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.63  E-value=0.00067  Score=48.94  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..+..|...+..|+|..|+.+|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   77 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP   77 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence            34444555555555555555555554433321    34444455555555555555555544443333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.63  E-value=0.00029  Score=52.59  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP---d~qVRqQ  244 (344)
                      +...+..|...+..|+|.+|+..|+.++...|.    ...+.+.|+.+|...|+.++|+..++......|   +......
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT----YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            345778899999999999999999999997654    367889999999999999999999998764333   4444444


Q ss_pred             HHHHHhhh
Q 019243          245 AADLRYIL  252 (344)
Q Consensus       245 AK~LLyIL  252 (344)
                      ...++.-|
T Consensus        95 l~~~l~~l  102 (115)
T 2kat_A           95 LQVFLRRL  102 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44444433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.62  E-value=0.0015  Score=62.11  Aligned_cols=71  Identities=17%  Similarity=0.066  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          167 TAQLMFELGQKAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y-~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      .+...+..|...+..|+| .+|+++|+.++...|.    ...+...|+.+|...|+.++|+..|+......|++.+
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  172 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS  172 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHH
Confidence            367789999999999999 9999999999997654    3689999999999999999999999999877887543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.62  E-value=0.00035  Score=49.46  Aligned_cols=68  Identities=12%  Similarity=0.136  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..+..|...+..|+|.+|+++|+.++...|.  .....+...++.+|... |+.++|+..++.+...+|+.
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            3466788888888888888888888876544  22457788888888888 88888888888888666653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.61  E-value=0.00048  Score=55.27  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+...+..|...+.+|+|.+|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..|+......|+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            34567889999999999999999999999876653    577788999999999999999999998866675

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.60  E-value=0.00068  Score=55.24  Aligned_cols=74  Identities=18%  Similarity=0.073  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--Cch----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFG----------GEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S--~lG----------GEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      ...+...+..|...+.+|+|.+|+.++..++...+...  ..+          ..+...++.+|...|+.++|+..|+..
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34455677788888888888888888888887665432  111          267778888888888888888888887


Q ss_pred             HhhCCC
Q 019243          233 ESNHPS  238 (344)
Q Consensus       233 ~~~HPd  238 (344)
                      ...+|+
T Consensus       115 l~~~p~  120 (198)
T 2fbn_A          115 LKIDKN  120 (198)
T ss_dssp             HHHSTT
T ss_pred             HHhCcc
Confidence            755654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=0.0013  Score=49.15  Aligned_cols=70  Identities=11%  Similarity=0.003  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+.+|+|..|+++|+.++...|. .+.-..+.+.++.+|...|+.++|+..|+.....+|+
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            456788999999999999999999999987653 2333688899999999999999999999998767775

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.58  E-value=0.00044  Score=50.67  Aligned_cols=64  Identities=14%  Similarity=-0.011  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..+..|...+..|+|.+|+.+|+.++...|.    ...+.+.++.+|...|+.++|+..++.....+|
T Consensus        52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           52 LYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            3444455555555555555555555554332    234445555555555555555555555443333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.56  E-value=0.00042  Score=54.95  Aligned_cols=70  Identities=21%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      ++..-+..|...+.+|+|.+|++.|+.+++..|.+    ..+...|+.+|...|+.++|+..++.+...+|+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~   73 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA   73 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence            45566789999999999999999999999976643    57889999999999999999999999986777643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.54  E-value=0.00095  Score=47.21  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+..|...+.+|+|.+|+.+++.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            4567889999999999999999999976543    578889999999999999999999998866776

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.54  E-value=0.00043  Score=57.20  Aligned_cols=68  Identities=15%  Similarity=0.093  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+...|..|...+..|+|.+|+++|+.++...|.    ...+-+.|+.+|...|+.++||..|++.....|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            3556899999999999999999999999997664    3567888999999999999999999998877776

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.001  Score=49.96  Aligned_cols=65  Identities=15%  Similarity=-0.038  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H  236 (344)
                      +...+..|...+..|+|.+|+..++.++...|.+    ..+.+.++.+|...|+.++|+..+++....+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            3457788999999999999999999999976653    6789999999999999999999999887566

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.48  E-value=0.0032  Score=45.34  Aligned_cols=67  Identities=22%  Similarity=0.263  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|++.++.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            3456778999999999999999999999875543    678899999999999999999999998767774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.47  E-value=0.00067  Score=56.92  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+.+|+|.+|+..|+.++...|. ++...++...++.+|...|+.++|+..++.|...+|+
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            4577899999999999999999999998775 4566799999999999999999999999999866664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.46  E-value=0.00041  Score=53.85  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..|..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+......|+.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            35788999999999999999999999976653    6889999999999999999999999988677753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.43  E-value=0.0018  Score=46.31  Aligned_cols=63  Identities=29%  Similarity=0.451  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      .+..|...+..|+|.+|+.+|+.++...+.+    ..+...++.+|...|+.++|+..++.....+|
T Consensus        46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            4445555556666666666666655543321    34445555556666666666666555543444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.40  E-value=0.00084  Score=55.18  Aligned_cols=66  Identities=9%  Similarity=0.054  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+.+|+|.+|+..|+.++...|...   ..+..+++.+|...|+.++|+..|++....+|+
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   74 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN   74 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence            344555555555555555555555555444111   134445555555555555555555555434443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.39  E-value=0.00068  Score=59.78  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      ...+..|..++.+|+|.+|+++|+.+++..|.+    ..+.+.|+.+|...|+.++|+.+++.+...+|+....
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence            356889999999999999999999999977754    5899999999999999999999999998788877644

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00081  Score=60.38  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .+.++..+..|..++..|+|.+|+..|+.++...|.     ..+...++.+|...|+.++|+..|+.....+|+.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   72 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY   72 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence            455667788888888888888888888888876642     5677778888888888888888888777566664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.38  E-value=0.0016  Score=46.22  Aligned_cols=68  Identities=21%  Similarity=0.100  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ....+..|...+..|+|..|+..++.++...|.    ...+...++.+|...|+.++|+..++.....+|+.
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            345677899999999999999999999987654    36788999999999999999999999988566643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.35  E-value=0.0012  Score=52.25  Aligned_cols=69  Identities=22%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+...+..|...+.+|+|.+|+++|+.++...|.+    ..+.+.++.+|...|+.++|+..|+.....+|+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            346678999999999999999999999999977653    678899999999999999999999998877776

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.33  E-value=0.003  Score=49.38  Aligned_cols=68  Identities=15%  Similarity=0.016  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|++.++.++...|.    ...+-+.++.+|...|+.++|+..+++..+-+|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK----FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            445678899999999999999999999997654    35788999999999999999999999988677754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.31  E-value=0.0014  Score=54.54  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      ..+..|...+..|+|.+|+..|+.+++..|.    ...+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus        56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           56 LATELALAYKKNRNYDKAYLFYKELLQKAPN----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            3455899999999999999999999997665    368899999999999999999999999987888743

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.30  E-value=0.0059  Score=43.53  Aligned_cols=67  Identities=28%  Similarity=0.449  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|+++|+.++...|.    ...+...++.+|...|+.++|+.+++.....+|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            445678899999999999999999999987653    3578889999999999999999999998756664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.27  E-value=0.0042  Score=50.54  Aligned_cols=82  Identities=16%  Similarity=0.026  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA  246 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQAK  246 (344)
                      +...+..|...+..|+|.+|+.+++.++...|.    ...+.+.++.+|...|+.++|+..++.....+|+ +.+...-.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            445778899999999999999999999997654    3688999999999999999999999988767774 55666555


Q ss_pred             HHHhhhc
Q 019243          247 DLRYILQ  253 (344)
Q Consensus       247 ~LLyILE  253 (344)
                      .++..+.
T Consensus       164 ~~~~~~~  170 (198)
T 2fbn_A          164 LCVNKLK  170 (198)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.27  E-value=0.0012  Score=52.23  Aligned_cols=66  Identities=21%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ....+..|...+..|+|.+|++.|+.++...|.    ...+...++.+|...|+.++|+..+++....+|
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG----FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch----hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            345677899999999999999999999987654    357889999999999999999999998774444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.27  E-value=0.002  Score=48.17  Aligned_cols=67  Identities=12%  Similarity=-0.045  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|..|+..|+.++...|.    ...+.+.++.+|...|+.++|+..++.....+|+
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            345778899999999999999999999997654    4678999999999999999999999988755554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.25  E-value=0.003  Score=53.29  Aligned_cols=67  Identities=12%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      .+..|...+..|+|.+|+..|+.++...|.+...-..+-+.++.+|...|+.++|+.+|+.....+|
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3445777777888888888888877776665444455566677778888888888888877775566

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.23  E-value=0.0038  Score=49.15  Aligned_cols=33  Identities=18%  Similarity=0.083  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~  200 (344)
                      +...|..|...+..|+|.+|++.|+.++...|.
T Consensus        97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            556788899999999999999999999987664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.23  E-value=0.0029  Score=48.18  Aligned_cols=69  Identities=13%  Similarity=0.066  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            345556667777777777777777777777654432    456666777777777777777777666545554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.23  E-value=0.0014  Score=54.91  Aligned_cols=67  Identities=27%  Similarity=0.315  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ...+..|...+.+|+|.+|+..|+.++...|.    ...+...++.+|...|+.++|+..+++.....|+.
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ----DPEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            34678899999999999999999999986554    36889999999999999999999999988778864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.22  E-value=0.0045  Score=49.76  Aligned_cols=74  Identities=20%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT------------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S------------~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~  235 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+.            +....+...++.+|...|+.++|+..++.....
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            44567889999999999999999999999877643            455689999999999999999999999998867


Q ss_pred             CCCHHH
Q 019243          236 HPSKNI  241 (344)
Q Consensus       236 HPd~qV  241 (344)
                      +|+...
T Consensus       151 ~p~~~~  156 (213)
T 1hh8_A          151 KSEPRH  156 (213)
T ss_dssp             CCSGGG
T ss_pred             Cccccc
Confidence            776654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.20  E-value=0.0022  Score=54.13  Aligned_cols=66  Identities=8%  Similarity=0.018  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ....+..|...+..|+|.+|+..|+.++...|.    ...+...++.+|...|+.++|+..|+...+.+|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMD----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            345666777777788888888888887776443    236777778888888888888888887774455

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.18  E-value=0.0013  Score=59.70  Aligned_cols=70  Identities=14%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+.++..+..|...+.+|+|.+|+.+|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   91 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD   91 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            3456677888888888888888888888888766543    467777888888888888888888877656665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.15  E-value=0.005  Score=44.91  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|..|+.+|+.++...|.+    ..+...++.+|...|+.++|+.+|+...+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            4457888999999999999999999999865543    688899999999999999999999998866775

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.09  E-value=0.0046  Score=51.13  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+.+|+.++...+.+...-..+...++.+|...|+.++|+..+++..
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345667788888888888888888888887655444446777788888888888888888877643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.09  E-value=0.00061  Score=54.84  Aligned_cols=69  Identities=7%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      ..+..|...+..|+|.+|+..|+.++...|.    ...+.+.++.+|...|+.++|+..++.+...+|++.+.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~   76 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS----RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK   76 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH
Confidence            4678899999999999999999999986554    36889999999999999999999999988667755543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.08  E-value=0.0051  Score=48.64  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+..|...+..|+|.+|+++|+.++...|.+    ..+...++.+|...|+.++|+.+++...
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~   69 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQAL   69 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3444445555555555555555544433321    3344444555555555555555554444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.05  E-value=0.0056  Score=43.76  Aligned_cols=64  Identities=30%  Similarity=0.467  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..+..|...+..|+|.+|+++|+.++...+..    ..+...++.+|...|+.++|+..++......|
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            34556677777777777777777777654432    45666677777777777777777776653444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.04  E-value=0.003  Score=57.37  Aligned_cols=67  Identities=16%  Similarity=0.018  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ...+..|...+..|+|.+|++.++.++...|.    ...+.+.++.+|...|+.++|+..+++....+|+.
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            45566777788888888888888888876554    35677888888888888888888887776566653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.02  E-value=0.0023  Score=56.42  Aligned_cols=68  Identities=13%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+...+..|...+.+|+|.+|+++|+.++...+.+...-..+...++.+|...|+.++|+..|++..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44556777888888888888888888888887665444445677788888888888888888877655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.00  E-value=0.003  Score=55.62  Aligned_cols=68  Identities=12%  Similarity=-0.037  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|++.++.++...|.    ...+...++.+|...|+.++|+..++.....+|+.
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            445677889999999999999999999886543    35788899999999999999999998876456543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.00  E-value=0.004  Score=51.47  Aligned_cols=63  Identities=11%  Similarity=0.003  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      .+..|...+..|+|.+|+..|+.++...|.+    ..+...++.+|...|+.++|+..++.....+|
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  139 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT  139 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence            3455666666666666666666666544432    24555666666666666666666655553333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.99  E-value=0.0039  Score=52.26  Aligned_cols=68  Identities=25%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +...+..|...+..|+|.+|++.|+.++...     ....+.+.|+.+|...|+.++|+..|+.....+|+..
T Consensus       118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          118 APLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            3456778999999999999999999999876     2367889999999999999999999999887788643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.98  E-value=0.0053  Score=43.92  Aligned_cols=65  Identities=29%  Similarity=0.459  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+.+|+.++...+.    ...+...++.+|...|+.++|+.+++.....+|+
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            3445566666777777777777776665433    2355566677777777777777777666544543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0033  Score=50.85  Aligned_cols=67  Identities=16%  Similarity=0.055  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..++..+..|...+..|+|.+|+.+|+.++... .    ...+...++.+|...|+.++|+..++.....+|
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   69 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR   69 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence            356778999999999999999999999999876 2    257899999999999999999999999884444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.96  E-value=0.0044  Score=47.16  Aligned_cols=59  Identities=27%  Similarity=0.483  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+..|...+..|+|.+|+.+|+.++...+.+    ..+...++.+|...|+.++|+..++...
T Consensus       113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445666666666666666666666554322    4556666666666666666666666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.93  E-value=0.0036  Score=54.60  Aligned_cols=67  Identities=21%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+    ..+...|+.+|...|+.++|+.+++.....+|+
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPK  165 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence            4456777888888888888888888888865542    577888888888888888888888888744443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.93  E-value=0.0082  Score=51.92  Aligned_cols=65  Identities=15%  Similarity=0.060  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      +...+..|..++..|+|.+|+.+|+.++...+.+...-..+.+.++.+|...|+.++|+..|++.
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   73 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   73 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            33456677777777777777777777777655444444566777777777777777777776653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.92  E-value=0.0039  Score=47.44  Aligned_cols=64  Identities=20%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ..+..|...+..|+|.+|+.+++.++...|.    ...+.+.++.+|...|+.++|+.+++.....+|
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  107 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLADAPD----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP  107 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence            3444555556666666666666665554332    234555556666666666666666655553443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.91  E-value=0.0066  Score=49.82  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      ..+..|...+..|+|.+|+.+|+.++...|.    ...+.+.++.+|...|+.++|+..|+.....+|+..
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            4566899999999999999999999985543    578899999999999999999999999987788643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0065  Score=49.07  Aligned_cols=76  Identities=18%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG---GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq  243 (344)
                      +...+..|...+..|+|.+|+..|+.++...|...+..   ..+...++.+|...|+.++|+..++.....+|+..+-.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  116 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT  116 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence            34577889999999999999999999998666432222   68899999999999999999999999987777765543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.87  E-value=0.0038  Score=59.33  Aligned_cols=67  Identities=13%  Similarity=0.069  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ...+..|...+..|+|.+|+..++.++...|.+    ..+.+.++.||...|+.++|+..|+.....+|+.
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            445566777788888888888888888766553    5677788888888888888888888877455543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.86  E-value=0.0033  Score=54.58  Aligned_cols=70  Identities=17%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--------CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--------TFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--------S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~  235 (344)
                      ++|...+..|...+..|+|..||+.+..++...|.+        .+.-..+-..++.||...|+.++||..|.....-
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999977752        1112237788999999999999999999998856

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.86  E-value=0.0022  Score=59.83  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAAD  247 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~  247 (344)
                      ...+..|...+..|+|.+|+++++.++...|.    ..++.+.++.||...|+.++|+..++......| ++.++..-..
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556778888999999999999999986543    367888999999999999999999988775676 4555555444


Q ss_pred             HHhhh
Q 019243          248 LRYIL  252 (344)
Q Consensus       248 LLyIL  252 (344)
                      ++..+
T Consensus       350 ~~~~~  354 (370)
T 1ihg_A          350 VKQKI  354 (370)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.86  E-value=0.0086  Score=48.11  Aligned_cols=66  Identities=11%  Similarity=-0.042  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+..|+|.+|+++|+.++...|.    ...+.+.++.+|...|+.++|+..++.....+|+
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence            45778899999999999999999999987654    3578889999999999999999999998855554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.84  E-value=0.0039  Score=51.54  Aligned_cols=68  Identities=10%  Similarity=0.006  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|++.|+.++. .+.+...-..+-+.++.+|...|+.++|+..++.....+|+
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            345566667777777777777777766 44444445666677777777777777777777776645554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.83  E-value=0.012  Score=43.50  Aligned_cols=67  Identities=13%  Similarity=0.056  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~--~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+...+..|...+..|+|.+|+++++.++...+.  ....-..+...++.+|...|+.++|+..++...
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3456777888999999999999999998875542  222335677788899999999999998887765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.82  E-value=0.0094  Score=48.95  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +...+..|...+..|+|.+|+.+|+.++...|.+    ..+...++.+|...|+.++|+..++.....+|+..
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            4456778889999999999999999999876653    47888999999999999999999999886777765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.82  E-value=0.011  Score=55.03  Aligned_cols=55  Identities=22%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI  226 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAI  226 (344)
                      ++..+..|...+..|+|.+|++.|+.+++..|.    ...+...|+.++...|+.++|.
T Consensus       307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~----~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE----DKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHH
Confidence            556788899999999999999999999987664    3578888999999888887765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.80  E-value=0.011  Score=46.77  Aligned_cols=67  Identities=10%  Similarity=0.061  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALer-G~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+.. |+|.+|+.+++.++.  .+..+....+...++.+|...|+.++|+..++.....+|+
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A           78 INNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            345556666677 777777777777666  2233444566666777777777777777777666544554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.78  E-value=0.0065  Score=49.78  Aligned_cols=60  Identities=12%  Similarity=-0.131  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+..|...+..|+|.+|+++|+.++...+.    ...+.+.++.+|...|+.++|+.+++.+.
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4445566666666666666666666665432    24556666666666666666666666665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.77  E-value=0.009  Score=53.12  Aligned_cols=69  Identities=10%  Similarity=0.055  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+...++.+|...|+.++|+.+++......|+..
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            4456777888999999999999999998876543    57888899999999999999999999886667654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.75  E-value=0.01  Score=48.81  Aligned_cols=67  Identities=21%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|+.+|+.++...|.    ...+...++.+|...|+.++|+.+++.....+|+
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence            344566666666777777777777776665443    2456666666677777777777776666644553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.75  E-value=0.006  Score=54.26  Aligned_cols=67  Identities=12%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +..|...+..|+|.+|+.+|+.++...|.+...-.++...++.+|...|+.++|+.+|+.....+|+
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            3346666666666666666666666555433333455566666666666666666666665434553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.74  E-value=0.0077  Score=53.01  Aligned_cols=73  Identities=12%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH---HHHHHHHHHHhhh
Q 019243          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQAADLRYIL  252 (344)
Q Consensus       176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~---qVRqQAK~LLyIL  252 (344)
                      ...+++|++..|++.|+.+++..|    -...+++.|+.+|...|+.++|+..++.+...+|+.   .++..--.++..+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENP----EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCC----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            334444455555555555555433    346899999999999999999999999999888874   4555444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.73  E-value=0.01  Score=46.90  Aligned_cols=67  Identities=15%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             HHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          169 QLMFELGQK-AYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       169 ~~~leaG~a-ALerG~Y--~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ...+..|.. .+..|+|  ..|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..++.+...+|+.
T Consensus        79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            345566776 6678888  88888888888765532    4677778888888888888888887776566654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.72  E-value=0.013  Score=46.37  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhCCCH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNRH--ADCIALYKQLESNHPSK  239 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatA-YeA~Gq~--ekAIALCq~L~~~HPd~  239 (344)
                      ...+..|...+..|+|..|+.+|+.++...|.+    ..+...++.+ |...|+.  ++|+.+++.....+|+.
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            356788999999999999999999999987753    5678889999 8899998  99999999988677763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.71  E-value=0.022  Score=46.60  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+++|+.++...|.    ...+.+.++.+|...|+.++|+.+++.....+|+
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRN----QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            4455566667777777777777776665443    2456666777777777777777777766644443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.69  E-value=0.0086  Score=48.26  Aligned_cols=65  Identities=14%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+++|+.++...+.    ...+.+.++.+|...|+.++|+..++.....+|+
T Consensus       127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          127 LFYMLGTVLVKLEQPKLALPYLQRAVELNEN----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            4455566666666666666666666654432    2345556666666666666666666665544443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.68  E-value=0.011  Score=43.58  Aligned_cols=66  Identities=23%  Similarity=0.222  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+++++.++....  .....-..+...++.+|...|+.++|+..+++..
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55677889999999999999999999997543  2234456788999999999999999999998765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.66  E-value=0.029  Score=50.81  Aligned_cols=62  Identities=15%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC-IALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA-IALCq~L~  233 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+    ..+...|+.+|...|+.++| ..+|+.+.
T Consensus       230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN----KAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457788999999999999999999999987653    47899999999999999999 67888876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.64  E-value=0.0036  Score=57.03  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CchH----------HHHHHHHHHHHHcCChHHHHHHHHH
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGG----------EIQIWLAMAYEANNRHADCIALYKQ  231 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S---~lGG----------EaQmwLatAYeA~Gq~ekAIALCq~  231 (344)
                      ...+...+..|..++.+|+|.+|+..++.++...+.+.   ..|-          .+.+.++.+|...|+.++|+..|+.
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34456688899999999999999999999998776432   1111          3788899999999999999999998


Q ss_pred             HHhhCCC
Q 019243          232 LESNHPS  238 (344)
Q Consensus       232 L~~~HPd  238 (344)
                      ....+|+
T Consensus       256 al~~~p~  262 (338)
T 2if4_A          256 VLTEEEK  262 (338)
T ss_dssp             HHHHCTT
T ss_pred             HHHhCCC
Confidence            8767774

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.64  E-value=0.0088  Score=51.52  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+..|+|.+|+.+|+.++...|.    ...+...++.+|...|+.++|+..++.....+|+
T Consensus        99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  164 (368)
T 1fch_A           99 EAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMALAVSFTNESLQRQACEILRDWLRYTPA  164 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            34555666677777777777777776665443    2456666777777777777777777766644444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.62  E-value=0.016  Score=46.65  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|..|+++|+.++...+.    ...+.+.++.+|...|+.++|+.+|+.....+|+
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            344567788899999999999999999987654    3578899999999999999999999998766664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.62  E-value=0.0093  Score=47.87  Aligned_cols=64  Identities=19%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+..|+.++...|..  ....+...|+.+|...|+.++|+..|+...
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            4567788999999999999999999988876642  224678888999999999999999998765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.57  E-value=0.02  Score=45.12  Aligned_cols=88  Identities=9%  Similarity=-0.061  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNI  241 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~--lGGEaQmwLatAYeA~Gq~ekAIALCq~L~---~~HPd~qV  241 (344)
                      .+...+..|...+..|+|.+|+.+|+.++........  .-..+...++.+|...|+.++|+..+++..   ..+.++..
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  185 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA  185 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3556778899999999999999999999975442222  234556899999999999999998887543   35667766


Q ss_pred             HHHHHHHHhhhcC
Q 019243          242 RRQAADLRYILQA  254 (344)
Q Consensus       242 RqQAK~LLyILEA  254 (344)
                      .-.+...+..+..
T Consensus       186 ~~~~~~~~~~~~~  198 (203)
T 3gw4_A          186 VNELMTRLNGLEH  198 (203)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHhcccchhh
Confidence            6666666665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.57  E-value=0.011  Score=49.39  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+..|+|.+|++.|+.++...|.    ...+...++.+|...|+.++|+..++.....+|+
T Consensus        56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A           56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            34455566667777777777777776665433    2456666677777777777777777766644443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.55  E-value=0.026  Score=45.79  Aligned_cols=67  Identities=19%  Similarity=0.168  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~----~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+...+..|...+..|+|.+|+++|+.++..    .+..++.-..+...|+.+|...|+.++|+.+++...
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3556778899999999999999999999986    334467778999999999999999999999999887

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.52  E-value=0.002  Score=48.53  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..|+|.+|+.+|+.+++.. ...|....+.+.|+.+|...|+.++|+..+++....+|+.
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4699999999999999853 2245667899999999999999999999999988788864

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.49  E-value=0.015  Score=50.72  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+.
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  280 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF  280 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            3455667888888999999999999998876543    5678888999999999999999998877677763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.45  E-value=0.0078  Score=50.47  Aligned_cols=60  Identities=3%  Similarity=-0.089  Sum_probs=31.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 019243          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP  237 (344)
Q Consensus       174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-q~ekAIALCq~L~~~HP  237 (344)
                      .+...+..|+|.+|+.+++.++...|.    ...+.+.++.+|...| +.++|+..++......|
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  122 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPS----NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK  122 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTT----STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence            444555555555555555555554332    1345555556666666 55666666655553333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.45  E-value=0.024  Score=53.05  Aligned_cols=75  Identities=21%  Similarity=0.191  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l-GGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~  247 (344)
                      ...|-.|.++-..|++.+|+.+|+.+....  ..|. ...+++.+++|+...|+.++|+++++.+...+|+    ..+..
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~----~~~~~  245 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE----PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC----HHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----HHHHH
Confidence            356888999999999999999999988421  1133 6789999999999999999999999999988988    44555


Q ss_pred             HH
Q 019243          248 LR  249 (344)
Q Consensus       248 LL  249 (344)
                      .|
T Consensus       246 aL  247 (282)
T 4f3v_A          246 AL  247 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.45  E-value=0.02  Score=49.34  Aligned_cols=67  Identities=19%  Similarity=0.294  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|+.+|+.++...|.+    ..+...++.+|...|+.++|+..|+.....+|+
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4456677899999999999999999999875543    578889999999999999999999998756665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.38  E-value=0.024  Score=47.41  Aligned_cols=65  Identities=15%  Similarity=0.082  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+.+|+.++...|.    ...+...++.+|...|+.++|+..++.....+|+
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   87 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   87 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence            4678899999999999999999999987654    4578889999999999999999999998867774

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.31  E-value=0.02  Score=47.91  Aligned_cols=70  Identities=19%  Similarity=0.124  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-----CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-----FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S-----~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+..|+|.+|+.+|+.++...+...     +....+...++.+|...|+.++|+..++.....+|+
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            4456678888888888888888888887543211     333567788888888888888888888887755554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.31  E-value=0.019  Score=44.27  Aligned_cols=67  Identities=16%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~---Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+-.++   ..+|..+|+.+++.-|    ...++.+.|+.+|...|+.++||..++.+....|+
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3456667777765554   8999999999999554    45789999999999999999999999999866665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.29  E-value=0.028  Score=44.26  Aligned_cols=68  Identities=10%  Similarity=0.024  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~---~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+...+..|...+..|+|.+|+++++.++....   .....-+.+...++.+|...|+.++|+..+++..
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455678889999999999999999999998633   2222557788899999999999999999988764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.27  E-value=0.017  Score=50.59  Aligned_cols=81  Identities=10%  Similarity=0.016  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GG--EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l-GG--EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      +...+..|...+..|+|.+|+++|+.++...+.+... .+  .+-+.++.+|...|+.++|+..|+.-..-+|+..-...
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            3446677999999999999999999999977655432 12  35677889999999999999999997744555443333


Q ss_pred             HHHH
Q 019243          245 AADL  248 (344)
Q Consensus       245 AK~L  248 (344)
                      ++.+
T Consensus       238 ~~~l  241 (292)
T 1qqe_A          238 SNFL  241 (292)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.27  E-value=0.04  Score=52.32  Aligned_cols=62  Identities=13%  Similarity=0.221  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAI-ALCq~L~  233 (344)
                      +...|..|...+..|+|.+|+..|+.++...|.+.    .+...|+.+|...|+.++|. .+|+.+-
T Consensus       351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK----AARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999766543    68888999999999988776 5666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.23  E-value=0.12  Score=41.99  Aligned_cols=70  Identities=17%  Similarity=0.062  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~----~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~  235 (344)
                      ..+...+..|...+.+|+|.+|+++|+.++...    ...++....+...++.+|...|+.++|+.++++....
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345677888999999999999999999999764    3445677899999999999999999999999988733

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.23  E-value=0.018  Score=59.47  Aligned_cols=68  Identities=13%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|++.|+.+++..|.    ..++...|+.+|...|+.++|+..|++....+|+.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456777899999999999999999999997654    36889999999999999999999999887678764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.20  E-value=0.02  Score=54.53  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|+++|+.+++..|.+    ..+...|+.+|...|+.++|+..+++....+|+.
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4567778999999999999999999999976643    6788999999999999999999999988677753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.19  E-value=0.028  Score=49.91  Aligned_cols=64  Identities=8%  Similarity=-0.061  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV  241 (344)
                      ...+..|...+..|+|.+|++.|+.         +...++.+.++.+|...|+.++|+..++.+...+|+.-.
T Consensus       102 ~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~  165 (291)
T 3mkr_A          102 TFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL  165 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH
Confidence            3567788889999999999998887         234578888899999999999999999888877887643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.18  E-value=0.021  Score=50.32  Aligned_cols=66  Identities=24%  Similarity=0.214  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+.+|+|.+|++.|+.++...|.+    ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus        68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  133 (388)
T 1w3b_A           68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            345666777777777777777777777654432    345566666666666666666666665545554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.17  E-value=0.042  Score=54.33  Aligned_cols=68  Identities=6%  Similarity=-0.092  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .++......|.....+|+|.+|+.+++.+++    ..++++|.-+..-.-|+.+|..+|+.++|+.+|++-.
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4566777888899999999999999999885    5788899999999999999999999999999988643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.16  E-value=0.093  Score=43.49  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~----~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+...+..|...+..|+|.+|+++|+.++...    ....+....+...++.+|...|+.++|+.+++...
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35567778999999999999999999998763    23366777899999999999999999999999988

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.14  E-value=0.026  Score=46.88  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~----~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+...+..|...+.+|+|.+|+.+|+.++....    ...+.-..+...++.+|...|+.++|+.+++...
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345678889999999999999999999998532    2456678899999999999999999999999887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.018  Score=51.19  Aligned_cols=65  Identities=9%  Similarity=0.008  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG-------------EIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG-------------EaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      ..++.|..++.+|+|.+|++.+..++...+..+....             ++-..|+.+|...|+.++|+.+++.+..
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4678899999999999999999999987775543221             4567899999999999999999988763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.09  E-value=0.029  Score=53.53  Aligned_cols=68  Identities=13%  Similarity=-0.011  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---NRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~---Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|+++|+.+++..|.+    ..+...++.+|...   |+.++|+..+++....+|+.
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            4567788999999999999999999999976643    57889999999999   99999999999988677765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.05  E-value=0.014  Score=51.42  Aligned_cols=72  Identities=8%  Similarity=-0.021  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG--GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +...+..|...+..|+|.+|+++|+.++...+.+....  ..+.+.++.+|...|+.++|+..|++.. .+|+..
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            45566778999999999999999999998765433322  3456677788889999999999999987 777543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.03  E-value=0.073  Score=42.27  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHhhCCC-HHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPS-KNIRRQA  245 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIAL-Cq~L~~~HPd-~qVRqQA  245 (344)
                      +..-+..|...+..|+|.+|+..|+.+++..|.    ...+-+.|+.+|...|+.++|+.. +++..+-+|+ +.+-+--
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPT----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            456778899999999999999999999997664    357889999999999999877654 5544437885 4444333


Q ss_pred             HHH
Q 019243          246 ADL  248 (344)
Q Consensus       246 K~L  248 (344)
                      .+|
T Consensus       141 ~~l  143 (150)
T 4ga2_A          141 EQL  143 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.03  E-value=0.028  Score=54.10  Aligned_cols=68  Identities=13%  Similarity=0.006  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|++.++.+++..|.    ...+...++.+|...|+.++|+..+++....+|+.
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  107 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456778899999999999999999999987553    36788999999999999999999999987677754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.02  E-value=0.033  Score=55.01  Aligned_cols=70  Identities=9%  Similarity=0.090  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ....++..++.+..+..+|+|.+|+.+++.+++    ...++.+.-..+.-.|+.+|..+|+.++|+.+|++..
T Consensus       305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344555677778888899999999999999986    3456777788999999999999999999999998754

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.97  E-value=0.02  Score=52.09  Aligned_cols=65  Identities=11%  Similarity=0.034  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|+.+|+.++...|.    ...+.+.++.||...|+.++|+..++......|+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            5678899999999999999999999997654    3688999999999999999999999998744554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.91  E-value=0.0038  Score=60.06  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|..++.+|+|.+|+++++.+++..|.+    ..+...++.+|...|+.++|+..|++....+|+.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            4445667888899999999999999999986653    6888999999999999999999999988677753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=95.84  E-value=0.05  Score=49.40  Aligned_cols=66  Identities=18%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ...+..|...+..|+|.+|++.|+.++...|.+    ..+...++.+|...|+.++|+.+|+.....+|+
T Consensus       311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            345566777777778888888777777765442    366777777788888888888877777655655

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.77  E-value=0.12  Score=43.48  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+.    .|+|.+|+.+|+.++..-      ...+...|+.+|..    .|+.++|+..++... ...++
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~  110 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYA  110 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCc
Confidence            4456667777777    888888888888877652      35777788888888    888888888888877 55555


Q ss_pred             HHHHH
Q 019243          240 NIRRQ  244 (344)
Q Consensus       240 qVRqQ  244 (344)
                      ...-.
T Consensus       111 ~a~~~  115 (273)
T 1ouv_A          111 EGCAS  115 (273)
T ss_dssp             HHHHH
T ss_pred             cHHHH
Confidence            54433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.76  E-value=0.024  Score=49.87  Aligned_cols=68  Identities=18%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|+.+|+.++...|.    ...+...++.+|...|+.++|+..|+.....+|+.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            345788899999999999999999999987664    35788899999999999999999999987566653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.76  E-value=0.035  Score=48.51  Aligned_cols=72  Identities=19%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALer-G~Y~qAIelLE~a~~~~~~~S~--lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +......|.....+ |+|.+|+++++.++...+....  .-..+...++.+|...|+.++|+..|+.....+|+.
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            44566778888886 9999999999999997764322  224677889999999999999999999988556654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=95.69  E-value=0.042  Score=56.67  Aligned_cols=68  Identities=18%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...++.|+|.+|++.++.+++..|.    ..++...|+.+|...|+.++|+..|++....+|+.
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            556778899999999999999999999997654    36888999999999999999999999877678763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.65  E-value=0.064  Score=47.26  Aligned_cols=65  Identities=20%  Similarity=0.185  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|++.|+.++...|.    ...+...++.+|...|+.++|+.+++.....+|+
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            4456677778888888888888888775443    2456777888888888888888888877656664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.63  E-value=0.063  Score=47.23  Aligned_cols=65  Identities=14%  Similarity=0.074  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ...+..|...+..|+|.+|+++|+.++...+..  ...-..+...++.+|...|+.++|+..++...
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356778889999999999999999998865532  22335777889999999999999999988765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.61  E-value=0.063  Score=44.30  Aligned_cols=66  Identities=14%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+.+|+.++...+..  ...-..+...++.+|...|+.++|+..+++..
T Consensus       223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4467778888999999999999999988755432  33346777888999999999999999888765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.086  Score=47.26  Aligned_cols=74  Identities=18%  Similarity=0.129  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243          170 LMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (344)
Q Consensus       170 ~~leaG~aALe---rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK  246 (344)
                      ..+..|...+.   .|+|.+|+.+|+.++...|.    ...+.+.++.+|...|+.++|+..++.....+|+..-...+.
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPR----SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            56777888899   99999999999999987653    357889999999999999999999999887888865554444


Q ss_pred             H
Q 019243          247 D  247 (344)
Q Consensus       247 ~  247 (344)
                      .
T Consensus       490 ~  490 (514)
T 2gw1_A          490 T  490 (514)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.57  E-value=0.045  Score=47.46  Aligned_cols=66  Identities=12%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALT---IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~---~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+.+++.++.   ..+........+-..++.+|...|+.++|+..|++..
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            44566789999999999999999999994   4443333344788999999999999999999998866

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.55  E-value=0.13  Score=44.33  Aligned_cols=66  Identities=23%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|...+..|+|.+|+++|+.++...+..  ...-..+...++.+|...|+.++|+..+++..
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556778999999999999999999998754432  33346788899999999999999999988754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.51  E-value=0.03  Score=49.65  Aligned_cols=74  Identities=20%  Similarity=0.233  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCC------------------chHHHHHHHHHHHHHcCChHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTF------------------FGGEIQIWLAMAYEANNRHADCI  226 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~------------------lGGEaQmwLatAYeA~Gq~ekAI  226 (344)
                      ++..+=-|...|.+|+|++|...|..++..   ++.++.                  .-.+++..++.||...|+.++||
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            556778899999999999999999998652   222211                  11379999999999999999999


Q ss_pred             HHHHHHHhhCCCHHH
Q 019243          227 ALYKQLESNHPSKNI  241 (344)
Q Consensus       227 ALCq~L~~~HPd~qV  241 (344)
                      ++-+.+-.+...|.|
T Consensus       143 ~~Le~Ip~k~Rt~kv  157 (167)
T 3ffl_A          143 AILDGIPSRQRTPKI  157 (167)
T ss_dssp             HHHHTSCGGGCCHHH
T ss_pred             HHHhcCCchhcCHHH
Confidence            997766434444444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.49  E-value=0.034  Score=55.66  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..+..|...+..|+|.+|++.|+.+++..|.+    ..+.+.|+.+|...|+.++ +..|++....+|+
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            34445555555555555555555555544432    3445555555555555555 5555554434443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.43  E-value=0.16  Score=48.25  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCHHHHHHH
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRRQA  245 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~-------~HPd~qVRqQA  245 (344)
                      +.+...+..|+|.+++..|..++...|.+    -.+.-.|..||.++|+..+|+..|+.+..       --|.++++..-
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~----E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34567789999999999999999977763    35788899999999999999999998762       15899999888


Q ss_pred             HHHHhh
Q 019243          246 ADLRYI  251 (344)
Q Consensus       246 K~LLyI  251 (344)
                      +++|..
T Consensus       252 ~~il~~  257 (388)
T 2ff4_A          252 ERILRQ  257 (388)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            887754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=95.25  E-value=0.08  Score=49.06  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+..|+|.+|+++|+.++...|.    ...+...|+.+|...|+.++|+.+++++...+|+.
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN----DANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            345566788889999999999999999987653    35888999999999999999999999988778864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.25  E-value=0.075  Score=47.50  Aligned_cols=67  Identities=9%  Similarity=0.035  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~-~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+...+..|...+.+|+|.+|+++|+.++.... ..++....+...|+.+|...|+.++|+..+++..
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  288 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL  288 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455677789999999999999999999988443 2345568899999999999999999999998876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.22  E-value=0.06  Score=51.98  Aligned_cols=65  Identities=5%  Similarity=-0.028  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~----~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +..+.....+..+|+|.+|+++++.+++.    .+++.+.-..+--.|+.+|..+|+.++|+.+|++..
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34556666788999999999999999863    456777778999999999999999999999999776

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.023  Score=40.60  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~--lGGEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      +...+..|...+..|+|.+|++.|+.++...|.+..  ....+.+.++.+|...|+.+.|+..++.+
T Consensus        38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            345778899999999999999999999997765421  23678889999999999988887665544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.19  E-value=0.091  Score=51.12  Aligned_cols=66  Identities=8%  Similarity=-0.061  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...++.+..+-..|+|.+|+.+++.+++    ...++.+.-..+--.|+.+|..+|+.++|+.+|++..
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44566777777788999999999999986    3556777778888999999999999999999998865

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.18  E-value=0.25  Score=43.88  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          174 LGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       174 aG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .|...+.+|+|.+|+.+|+.++....  ...+.-+.+-..++.+|...|+.++|+..+++-.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al  170 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY  170 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            89999999999999999999998643  2233457888999999999999999999988754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.16  E-value=0.14  Score=45.58  Aligned_cols=67  Identities=7%  Similarity=0.073  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CC-CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-PT-FFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~-~S-~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .+...+..|...+..|+|..|+++|+.++..... .. +....+...|+.+|...|+.++|+..+++..
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999985432 22 5568899999999999999999999988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=95.12  E-value=0.045  Score=51.99  Aligned_cols=66  Identities=20%  Similarity=0.088  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---------NRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~---------Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+.+|+|.+|++.|+.++...|.     ..+...|+.+|...         |+.++|+..|++....+|+
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  211 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL  211 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence            445677899999999999999999999987644     48999999999999         9999999999998877877

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=95.07  E-value=0.091  Score=45.51  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRH-ADCIALYKQLE  233 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~-ekAIALCq~L~  233 (344)
                      ..+...+..|...+.+|+|.+|+++++.+++..+..  ...-+.+-..++.+|...|+. ++|+..|++-.
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            345567888999999999999999999999865432  334478899999999999965 99998887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.07  E-value=0.16  Score=44.60  Aligned_cols=70  Identities=14%  Similarity=-0.010  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~----~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      +...+..|...+.+|+|.+|+++++.++...+.    .++....+...++.+|...|+.++|+..|+.....++
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            334567788999999999999999999875532    1345567788899999999999999999988663444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.05  E-value=0.21  Score=43.22  Aligned_cols=85  Identities=9%  Similarity=0.052  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHH-HHHHHH---HHhhCCCHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADC-IALYKQ---LESNHPSKNIR  242 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekA-IALCq~---L~~~HPd~qVR  242 (344)
                      ...+..|...+.+|+|.+|+.+++.++....  .....-+.+-..++.+|...|+.++| +..++.   +.....+....
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~  276 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK  276 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence            4667889999999999999999999997543  22233478888999999999999999 543433   33456677776


Q ss_pred             HHHHHHHhhhc
Q 019243          243 RQAADLRYILQ  253 (344)
Q Consensus       243 qQAK~LLyILE  253 (344)
                      +.-..++.-||
T Consensus       277 ~~~~~~~~~~~  287 (293)
T 2qfc_A          277 EALVNKISRLE  287 (293)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            65555555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.04  E-value=0.076  Score=51.68  Aligned_cols=68  Identities=10%  Similarity=0.035  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .++......|.....+|+|.+|+.+++.+++    ..++++|.-+..-.-|+.+|..+|+.++|+.++++-.
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3466677788899999999999999999885    6788899999999999999999999999999988644

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.03  E-value=0.33  Score=42.00  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          167 TAQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTF-FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       167 ~a~~~leaG~aALerG---~Y~qAIelLE~a~~~~~~~S~-lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      ..+..|+-|.......   ++.++|.+|+.++...   +| .--+.-+.|+.+|...|+.++|+..|+.+....|+-   
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n---  104 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---  104 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Confidence            3567888888888877   8889999999999865   12 335788999999999999999999999999777765   


Q ss_pred             HHHHHHHhhhcC
Q 019243          243 RQAADLRYILQA  254 (344)
Q Consensus       243 qQAK~LLyILEA  254 (344)
                      .||+.|+..++.
T Consensus       105 ~QA~~Lk~~ie~  116 (152)
T 1pc2_A          105 NQAKELERLIDK  116 (152)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            466666666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.96  E-value=0.056  Score=46.79  Aligned_cols=60  Identities=18%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCCCchHHHH----HHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTI-------IPRPTFFGGEIQ----IWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~-------~~~~S~lGGEaQ----mwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .-+..|......|+|.+||..++.+++.       .|.    ...+-    .-+..||.+.|+.++||..|+.-.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            5778899999999999999999999997       553    34555    889999999999999999999877

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.90  E-value=0.12  Score=45.27  Aligned_cols=64  Identities=11%  Similarity=-0.018  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH--HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG--EIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG--EaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      .+..|...+.+|+|.+|+++|+.++...+......+  .+...++.+|...|+.++|+.+|+....
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  121 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ  121 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445566677777777777777777776665433333  2345677777888888888888888774

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.89  E-value=0.11  Score=43.49  Aligned_cols=69  Identities=17%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN----RHADCIALYKQLESNHPSKNI  241 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G----q~ekAIALCq~L~~~HPd~qV  241 (344)
                      .-+...+..|...+..|+|.+|+++|+.+++.-      ...++..|+..|.. |    +.++|+.+++... ...++..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAGSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTTCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCCCHHH
Confidence            446678888999999999999999999988742      24888999999998 6    8999999999987 6666654


Q ss_pred             H
Q 019243          242 R  242 (344)
Q Consensus       242 R  242 (344)
                      .
T Consensus        88 ~   88 (212)
T 3rjv_A           88 E   88 (212)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.66  E-value=0.099  Score=50.46  Aligned_cols=67  Identities=6%  Similarity=0.007  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      .++...-..|.....+|+|.+|+.+++.+++    ..++.+|.-+..-+-|+.+|..+|+.++|+.++++-
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3466677788888999999999999998885    578999999999999999999999999999988764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.61  E-value=0.37  Score=40.40  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 019243          167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       167 ~a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .+...+..|...+.    .|+|.+|+.+|+.++..-      ...+.+.|+.+|..    .|+.++|+..++... ...+
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~~  145 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLND  145 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTC
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcCc
Confidence            45667888999999    999999999999999852      46899999999999    999999999999998 5555


Q ss_pred             HHHHH
Q 019243          239 KNIRR  243 (344)
Q Consensus       239 ~qVRq  243 (344)
                      +...-
T Consensus       146 ~~a~~  150 (273)
T 1ouv_A          146 GDGCT  150 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=94.41  E-value=0.15  Score=45.56  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      ..+...+..|...+..|+|.+|+++|+.++....  .....-+.+...|+.+|...|+.++|+..+++...
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455677889999999999999999999998544  23345567888899999999999999999998873

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.37  E-value=0.37  Score=44.63  Aligned_cols=67  Identities=21%  Similarity=0.123  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~l-GGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      .+..|...+..|+|.+|+++|+.++...+  ...+. ...+...|+.+|...|+.++|+.+++.+...+|
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            34455666666777777777777665432  11222 255666667777777777777777766554455

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=94.37  E-value=0.17  Score=43.76  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .....|...+..|+|.+|+.+++.++..   .+...+.-..+-..++.+|...|+.++|+..|++..
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4667789999999999999999999963   334455566788899999999999999999888655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=94.33  E-value=0.19  Score=44.50  Aligned_cols=62  Identities=19%  Similarity=0.128  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCC
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD-CIALYKQLESNHPS  238 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ek-AIALCq~L~~~HPd  238 (344)
                      ..|...+..|+|.+|++.|+.++...|.    ..++-..++.+|...|+..+ |..+++++...+|+
T Consensus       205 ~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          205 GQAACHMAQGRWEAAEGVLQEALDKDSG----HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            3444444555555555555555443322    22334444445555555443 23444433334443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.29  E-value=0.14  Score=48.18  Aligned_cols=68  Identities=3%  Similarity=-0.030  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGM-YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~-Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +..-+..|...+..|+ |.+|++.|+.++...|.    ..++-..++.+|...|+.++||..|++.....|+.
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            3455677888889996 99999999999987665    35677888889999999999999999888666654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.24  E-value=0.28  Score=42.46  Aligned_cols=77  Identities=18%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-----------ChHHHH
Q 019243          168 AQLMFELGQKAYGKGM----------YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----------RHADCI  226 (344)
Q Consensus       168 a~~~leaG~aALerG~----------Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-----------q~ekAI  226 (344)
                      ++..+..|...++.|+          |.+||..|+.+++.-|.    -.++...|..||...|           +.++||
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            3344555555555554          56999999999997765    4578889999998774           899999


Q ss_pred             HHHHHHHhhCCCHHHHHHHHHH
Q 019243          227 ALYKQLESNHPSKNIRRQAADL  248 (344)
Q Consensus       227 ALCq~L~~~HPd~qVRqQAK~L  248 (344)
                      ..|++-..-.|+...-+.|..+
T Consensus       112 ~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A          112 QFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHH
Confidence            9999877789987766666544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=94.05  E-value=0.099  Score=45.98  Aligned_cols=66  Identities=11%  Similarity=0.024  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S--~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      +......|..... |+|.+|+++++.++...+...  ..-..+...++.+|...|+.++||..|++...
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455666776666 999999999999998766432  23357778899999999999999999998773

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.00  E-value=0.082  Score=52.90  Aligned_cols=67  Identities=10%  Similarity=0.048  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|++.|+.+++..|.+    .++...++.+|...|+.++|+..+++.....|+
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3445666666666666666666666666644432    456666666666666666666666665545553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.89  E-value=0.33  Score=45.99  Aligned_cols=65  Identities=9%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      .+-.|...+..|+|.+|+++|...+...+  +....++++.+|.+|...||.+.|..+.+.+...+|
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            35678888889999999999999877444  356789999999999999999999999999987788

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.88  E-value=0.092  Score=49.08  Aligned_cols=66  Identities=9%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ..|-.|..+++.|+|.+|+.+|+++....++  .....+.++|.+||...|+.++|+..|++-. .-|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~--~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~  202 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK--FLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPA  202 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc--ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCC
Confidence            3577888999999999999999976553311  1346799999999999999999999999997 5554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.73  E-value=0.22  Score=38.19  Aligned_cols=48  Identities=10%  Similarity=-0.099  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY  216 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAY  216 (344)
                      ....+-.|..+|++|+|.+||.+++.+++..|. ++-...++-.+..|.
T Consensus        43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~   90 (93)
T 3bee_A           43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK   90 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence            455777899999999999999999999998888 777666665555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.70  E-value=0.41  Score=37.92  Aligned_cols=68  Identities=12%  Similarity=0.038  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 019243          166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP  237 (344)
Q Consensus       166 e~a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HP  237 (344)
                      .-+...+..|..-+.    .++|.+|+++|+.+++.-      ...++..|+..|..    .++.++|+..++.-. ...
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g  127 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLG  127 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCC
Confidence            445667888888888    899999999999999852      25899999999999    899999999999988 666


Q ss_pred             CHH
Q 019243          238 SKN  240 (344)
Q Consensus       238 d~q  240 (344)
                      ++.
T Consensus       128 ~~~  130 (138)
T 1klx_A          128 SED  130 (138)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.65  E-value=0.2  Score=44.45  Aligned_cols=66  Identities=14%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +...+..|..-+++|+|.+|+.+|..+...+.  ...+.-.++.+.++.+|...|+.++|+.++++..
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            55677889999999999999999999887544  2345566888999999999999999999987654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.56  E-value=0.13  Score=38.01  Aligned_cols=51  Identities=14%  Similarity=0.120  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..|++.|+.++...|.    ...+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus         2 ~~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            2 QAITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CCHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            3578899998886554    35789999999999999999999999988677764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.28  E-value=0.4  Score=32.86  Aligned_cols=48  Identities=29%  Similarity=0.473  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN  220 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G  220 (344)
                      ...+..|...+..|+|.+|+.+|+.++...|.    ...+...++.+|...|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcC
Confidence            34677899999999999999999999997654    3577888888887765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.14  E-value=0.4  Score=46.88  Aligned_cols=73  Identities=12%  Similarity=0.067  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy  250 (344)
                      ..|..++-+|++.+|+++|+.++..-+  +   -.+-+.+..+|.-.|+.++|++.+.+-..-+|...+-.|++.|.+
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~Ln~--s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F  354 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGIDLEM--S---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF  354 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence            346667778999999999999999853  2   345578899999999999999999776668999999999988754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=93.10  E-value=0.26  Score=46.43  Aligned_cols=68  Identities=9%  Similarity=-0.071  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +..-+..|...+..|+|.+|++.|+.++...|.+    ..+-..++.+|...|+.++||..|+.....+|+.
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            4456777999999999999999999999977653    4778889999999999999999999998778864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=92.57  E-value=1  Score=40.38  Aligned_cols=77  Identities=16%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-------------------------------------------
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------------------------------------  205 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG-------------------------------------------  205 (344)
                      ...+..|...+..|+|.+|++.++.++...|.+....                                           
T Consensus       248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  327 (472)
T 4g1t_A          248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD  327 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            3456678888999999999999999998777543221                                           


Q ss_pred             ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243          206 ------GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (344)
Q Consensus       206 ------GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA  245 (344)
                            ..+...++.+|...|+.++|+..+++.....|++...+..
T Consensus       328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~  373 (472)
T 4g1t_A          328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL  373 (472)
T ss_dssp             HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence                  1123467888999999999999999876577877665443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=92.50  E-value=0.91  Score=42.68  Aligned_cols=73  Identities=12%  Similarity=0.041  Sum_probs=55.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI  251 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyI  251 (344)
                      +..+. .++.|+|.+|...++.+++..|.+    ..+-+.++..+...|+.++|+.+++.....||+..+  |-..+.++
T Consensus        17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l--w~~~~~~~   89 (530)
T 2ooe_A           17 SILIR-EAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL--WKCYLSYV   89 (530)
T ss_dssp             HHHHH-HHHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH--HHHHHHHH
T ss_pred             HHHHH-HHHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH--HHHHHHHH
Confidence            33444 367899999999999999977653    456666788888999999999999999878887553  55444333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.49  E-value=0.79  Score=39.96  Aligned_cols=50  Identities=12%  Similarity=0.002  Sum_probs=43.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      .|+|.+|+..|+.++...|.    ...+-+.++..+...|+.++|+++++....
T Consensus       182 ~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            69999999999999997764    246667778889999999999999999983

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.37  E-value=0.72  Score=40.23  Aligned_cols=67  Identities=13%  Similarity=-0.018  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~--~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .-+..|......|+|.+|+.+|+.++...  ++.  ....+-..++..+...|+.++|+.+++.....+|+
T Consensus       205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~--~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            34455666778899999999999999864  331  12345555678889999999999999998877885

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.24  E-value=3.7  Score=34.55  Aligned_cols=81  Identities=16%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGR---AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~q---AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      .+..|.-|-......+-..   +|.+|+..+....+  ..--+.-+.||.+|...|+..+|+..|..|...+|+-   .|
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~Q  109 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQ  109 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HH
Confidence            5567777777777666555   99999998885311  1334788999999999999999999999999777764   46


Q ss_pred             HHHHHhhhc
Q 019243          245 AADLRYILQ  253 (344)
Q Consensus       245 AK~LLyILE  253 (344)
                      |..|...++
T Consensus       110 A~~Lk~~i~  118 (126)
T 1nzn_A          110 AKELERLID  118 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=92.13  E-value=0.46  Score=42.69  Aligned_cols=61  Identities=20%  Similarity=0.059  Sum_probs=47.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          173 ELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       173 eaG~aALerG~Y~qAIelLE~a~~~~~~-----~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      -.|...+.+|+|.+||+.|+.+++..+.     ..+.-..+-.-++.+|...|+.++|+..+++..
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4688889999999999999999875331     122223444568999999999999998887765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=90.95  E-value=2.3  Score=35.30  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhhCC
Q 019243          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-----RHADCIALYKQLESNHP  237 (344)
Q Consensus       168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-G-----q~ekAIALCq~L~~~HP  237 (344)
                      +...+..|...+.    .++|.+|+.+|+.+++. +.+    ..++..|+.+|... |     +.++|+..++.-. ...
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g  198 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC-LEG  198 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HcC
Confidence            4556777777777    77888888888888876 211    24778888888543 4     7888888888877 555


Q ss_pred             CHHHHHH
Q 019243          238 SKNIRRQ  244 (344)
Q Consensus       238 d~qVRqQ  244 (344)
                      ++.-...
T Consensus       199 ~~~A~~~  205 (212)
T 3rjv_A          199 FDTGCEE  205 (212)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5554433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=90.68  E-value=1.7  Score=40.31  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +...+..|...+.    .++|.+|+++|+.+++.-      ...++..|+..|..    .++.++|+..++... ...++
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~  147 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRD  147 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCH
Confidence            4556677777777    778888888888777632      24677777777777    677788888887776 45455


Q ss_pred             HH
Q 019243          240 NI  241 (344)
Q Consensus       240 qV  241 (344)
                      ..
T Consensus       148 ~a  149 (490)
T 2xm6_A          148 SG  149 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.24  E-value=1.8  Score=41.01  Aligned_cols=74  Identities=23%  Similarity=0.153  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-------------------HHHHHHHHHHHHHcCChHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------------GEIQIWLAMAYEANNRHADCI  226 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG-------------------GEaQmwLatAYeA~Gq~ekAI  226 (344)
                      ..++..+..|..+...|+...|++.|+.|++..... .+.                   ..+...++.++.+.|++++|+
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~-~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            446778888999999999999999999999877532 111                   134456788899999999999


Q ss_pred             HHHHHHHhhCCCHH
Q 019243          227 ALYKQLESNHPSKN  240 (344)
Q Consensus       227 ALCq~L~~~HPd~q  240 (344)
                      ..|+.|...||-.+
T Consensus       192 ~~l~~~~~~~P~~E  205 (388)
T 2ff4_A          192 AELEALTFEHPYRE  205 (388)
T ss_dssp             HHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhCCCCH
Confidence            99888887999655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=89.72  E-value=1.8  Score=40.26  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+.    .++|.+|+.+|+.+++.-      ...++..|+.+|..    .|+.++|+..|+.-....|+
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            4456777777777    899999999999988743      25789999999998    89999999999988856654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=89.20  E-value=0.16  Score=36.15  Aligned_cols=52  Identities=13%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..+..|...+..|+|.+|++.|+.++...|.+....    .+        +...+|+..+++..
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~~~~~a~~~~~~~~   88 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------KMVMDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------HHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------HHHHHHHHHHHHHh
Confidence            567889999999999999999999999877644322    11        55566666665544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.64  E-value=1.2  Score=45.73  Aligned_cols=72  Identities=18%  Similarity=0.071  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL  249 (344)
                      ....+ .||..|++..|..+|+....    ....-.+.+.|++.|+++.|+.++|..+++.|. ++. .---.-|.+-|
T Consensus       289 e~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~~-~fYg~lAa~~L  360 (618)
T 1qsa_A          289 ERRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQR-GFYPMVAAQRI  360 (618)
T ss_dssp             HHHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSC-SHHHHHHHHHT
T ss_pred             HHHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cCC-ChHHHHHHHHc
Confidence            35555 58899999999999977443    223357899999999999999999999999998 543 33334444444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.54  E-value=1.6  Score=37.44  Aligned_cols=80  Identities=10%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG---~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      .+..|.-+-..+...   +...+|.+|+..+...+   ..--+--+.||.+|...|+..+|...|..|....|+-   +|
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N---~Q  113 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQ  113 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC---HH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC---HH
Confidence            455666666666544   45689999999998543   1235788999999999999999999999999556654   46


Q ss_pred             HHHHHhhhc
Q 019243          245 AADLRYILQ  253 (344)
Q Consensus       245 AK~LLyILE  253 (344)
                      |+.|...++
T Consensus       114 A~~Lk~~Ie  122 (134)
T 3o48_A          114 VGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=87.20  E-value=0.13  Score=48.45  Aligned_cols=54  Identities=19%  Similarity=0.086  Sum_probs=16.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Q 019243          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH---ADCIALYKQLE  233 (344)
Q Consensus       174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~---ekAIALCq~L~  233 (344)
                      .|..++++|+|.+|+++|+.+++.-.      ..+++.|+..|...|+.   ++|+.+|+...
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g~------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~   65 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELGY------SEAQVGLADIQVGTRDPAQIKQAEATYRAAA   65 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC------CTGGGTCC-----------------------
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence            45555555555555555555544321      13334444444445555   45555554444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=86.27  E-value=3.2  Score=39.00  Aligned_cols=55  Identities=16%  Similarity=0.121  Sum_probs=44.8

Q ss_pred             cCCHH-------HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          181 KGMYG-------RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       181 rG~Y~-------qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      .|++.       .|++.|+.+++...+   -...+.+.++..|...|+.++|+.+|+......|+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p---~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  353 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  353 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence            79987       999999999973322   23678888889999999999999999998855554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=85.50  E-value=3.3  Score=35.94  Aligned_cols=82  Identities=11%  Similarity=0.053  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243          167 TAQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (344)
Q Consensus       167 ~a~~~leaG~aALerG~---Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq  243 (344)
                      ..+..|+-+-......+   -..+|.+||..+...|..   --+--++||.+|...|+..+|...|..|....|+-   +
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~  111 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---K  111 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---H
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---H
Confidence            35566777766666554   457999999998855432   34678999999999999999999999999677764   4


Q ss_pred             HHHHHHhhhcC
Q 019243          244 QAADLRYILQA  254 (344)
Q Consensus       244 QAK~LLyILEA  254 (344)
                      ||+.|...++.
T Consensus       112 QA~~Lk~~Ie~  122 (144)
T 1y8m_A          112 QVGALKSMVED  122 (144)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}

Probab=84.42  E-value=3.7  Score=33.94  Aligned_cols=76  Identities=18%  Similarity=0.326  Sum_probs=44.1

Q ss_pred             cccccCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHH
Q 019243           75 VNAVDFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMR  149 (344)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r  149 (344)
                      .||.||+.-+.+|=  --|--.+.++.|++.|+.+|++..  ++.+..-++..+ +++-++-=.      .+.-.++|.-
T Consensus         6 ~~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS------~ke~~~~r~a   79 (100)
T 2xrh_A            6 TMAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMT------VADFEARQKA   79 (100)
T ss_dssp             CCCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSC------HHHHHHHHHH
T ss_pred             hcccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence            58999975544443  345556778899999999999864  334443333333 333333222      2333455555


Q ss_pred             HHHHHHH
Q 019243          150 VRRELEK  156 (344)
Q Consensus       150 v~~~le~  156 (344)
                      |+..|++
T Consensus        80 I~eal~k   86 (100)
T 2xrh_A           80 VKEALKK   86 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666555

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=82.99  E-value=7.7  Score=30.13  Aligned_cols=58  Identities=19%  Similarity=0.035  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243          185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (344)
Q Consensus       185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy  250 (344)
                      ..++..|..++.....      .++...+.|+...|. .+|+.....+. +++++.||..|...|.
T Consensus        72 ~~a~~~L~~~L~d~~~------~VR~~A~~aL~~~~~-~~a~~~L~~~l-~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 ERAVEPLIKLLEDDSG------FVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHHHHHHHCCT------HHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHcCCCH------HHHHHHHHHHHHhCc-HHHHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence            5678888887764333      899999999999985 56776666666 6999999999988765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=82.83  E-value=3.1  Score=36.84  Aligned_cols=64  Identities=8%  Similarity=0.001  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP--RP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~---S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..++..+.++++|.|..|+-+..-+++..+  +.   -..--++.+|++-+|-+.|+..+|...|++-.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            468889999999999999998888776442  21   12345788999999999999999999998854

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=80.95  E-value=2.4  Score=31.05  Aligned_cols=36  Identities=17%  Similarity=0.152  Sum_probs=31.1

Q ss_pred             CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          203 FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       203 ~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      |....+.+.|+.+|...|+.++|+..++.....+|+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   39 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD   39 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            445678899999999999999999999998867776

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=80.50  E-value=12  Score=35.41  Aligned_cols=55  Identities=11%  Similarity=0.004  Sum_probs=27.5

Q ss_pred             HHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          178 AYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       178 ALerG--~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      .|-+|  +|..|+.+|+.++...|.    -.-..+.+. +|+..|+.++|-.+.+.|.+.+|
T Consensus       186 ~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p  242 (310)
T 3mv2_B          186 KFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYY  242 (310)
T ss_dssp             HHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcc
Confidence            44444  666666666665544331    011223333 66666666666666665553333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231
            EL  + Y  G +  A           P  T     + + L+  +    R          
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNT----GVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 232 LESNHP 237
               +P
Sbjct: 59  AIKQNP 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.32
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.92
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.86
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.67
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.66
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.59
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.45
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.15
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.15
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.06
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.04
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.9
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.88
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.85
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.73
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.63
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.43
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.2
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.22
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	93.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.82
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	91.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	91.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	91.05
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	90.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	88.55
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	87.92
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	85.02
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	81.22
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	81.2

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-06  Score=65.67  Aligned_cols=73  Identities=25%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~---S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +..-|+.|..++++|+|.+||.+|+.|+...+.+   ...-+++-..|+.+|...|+.++||..|+....-.|+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            5667999999999999999999999999865532   233356777899999999999999999999776788743

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2.4e-05  Score=61.31  Aligned_cols=67  Identities=18%  Similarity=0.102  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      |+...+.|-.+|.+|+|..||.+|+.++...|.+    ..+-.-++.||...|+.++||..|+....-+|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~----~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence            4556778888888888888888888888876543    456666788888888888888888888744554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.2e-05  Score=59.68  Aligned_cols=69  Identities=16%  Similarity=0.108  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +++...+.|..+|..|+|.+||..+..++...|.    ...+-..++.+|...|+.++||..|......+|+-
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----chhhhhcccccccccccccccchhhhhHHHhccch
Confidence            3556778899999999999999999999886543    35788888999999999999999998888566653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.86  E-value=6e-05  Score=60.33  Aligned_cols=78  Identities=14%  Similarity=0.122  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHH-----------HHHHHHHHHHHcCChHHHHHHHH
Q 019243          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-----------IQIWLAMAYEANNRHADCIALYK  230 (344)
Q Consensus       162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGE-----------aQmwLatAYeA~Gq~ekAIALCq  230 (344)
                      .++.+.++...+.|-.+|..|+|..|+.++..++...+........           +..-++.||...|+.++||..|.
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            4566778889999999999999999999999999877765554332           22338999999999999999999


Q ss_pred             HHHhhCCCH
Q 019243          231 QLESNHPSK  239 (344)
Q Consensus       231 ~L~~~HPd~  239 (344)
                      .....+|+.
T Consensus        89 ~al~l~p~~   97 (168)
T d1kt1a1          89 KALGLDSAN   97 (168)
T ss_dssp             HHHHHCTTC
T ss_pred             hhhhcccch
Confidence            988677764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.71  E-value=0.0001  Score=55.69  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..|..|...+.+|+|.+|+..|+.++...|.    ...+..+|+.+|...|+.++||..++....-+|+-
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc----cchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            3588999999999999999999999997664    36889999999999999999999999977677773

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00018  Score=56.27  Aligned_cols=64  Identities=13%  Similarity=0.001  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      -+..|...+..|+|..|++.|+.+++..|.    ..++-+.++.+|...|+.++|+..++.....+|+
T Consensus        47 ~~~lg~~~~~~~~~~~A~~~~~kal~~~p~----~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          47 YGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhhhHHHHHhccccchHHHHHHHHHHHccc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            344566666666666666666666654432    3466677777777777777777777777655554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00036  Score=55.99  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG-----------EIQIWLAMAYEANNRHADCIALYKQLES  234 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG-----------EaQmwLatAYeA~Gq~ekAIALCq~L~~  234 (344)
                      +.|....+.|...|.+|+|..||.+++.++...+..+....           .+-..++.+|...|+.++|+..|+....
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            33444445555555555555555555555554443322111           1112244555555555555555554443


Q ss_pred             hCC
Q 019243          235 NHP  237 (344)
Q Consensus       235 ~HP  237 (344)
                      .+|
T Consensus        91 ~~p   93 (170)
T d1p5qa1          91 LDS   93 (170)
T ss_dssp             HCT
T ss_pred             ccc
Confidence            344

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.66  E-value=0.00018  Score=56.89  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------HHHHHHHHHHHHcCChHHHHHHH
Q 019243          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------EIQIWLAMAYEANNRHADCIALY  229 (344)
Q Consensus       162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG------------EaQmwLatAYeA~Gq~ekAIALC  229 (344)
                      .++.+.|....+.|-.+|.+|+|..|+..+..++..++.......            .+..-++.+|...|+.++||..|
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            355677778889999999999999999999999986664332211            23345899999999999999999


Q ss_pred             HHHHhhCCCH
Q 019243          230 KQLESNHPSK  239 (344)
Q Consensus       230 q~L~~~HPd~  239 (344)
                      +.....+|+.
T Consensus        91 ~~al~~~p~~  100 (153)
T d2fbna1          91 SKVLKIDKNN  100 (153)
T ss_dssp             HHHHHHSTTC
T ss_pred             hccccccchh
Confidence            9977677754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8.2e-05  Score=60.91  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      ....+..|...+..|+|.+|+.+|+.++...|.+    .++...|+.+|...|+.++|+..+.......|.
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   99 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD   99 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhhhccccccccccccccccccc
Confidence            3445666777777777777777777777655432    456666777777777777777777766644443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00034  Score=56.29  Aligned_cols=64  Identities=16%  Similarity=0.117  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      -+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..++......|+
T Consensus        74 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhhhchHHHHHHHHHHhhhhhhHHHHHHhhh----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            4445666666666666666666666544432    245555666666666666666666655544443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00026  Score=58.89  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .|+.|...+..|+|..|+..|+.++...|.    ...+-..|+.+|...|+.++|+..|.+....+|+.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK----HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            588899999999999999999999986554    36789999999999999999999999877677764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00047  Score=52.87  Aligned_cols=63  Identities=22%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .|...-+.|...|.+|+|.+||+.|..++...|.+    ..+...++.+|...|+.++|+..|+...
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            34556689999999999999999999999986653    4688889999999999999999999855

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.39  E-value=0.0011  Score=52.22  Aligned_cols=79  Identities=16%  Similarity=0.018  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADL  248 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~L  248 (344)
                      ..+..|...+..|+|.+||+.+..++...|.+    .++.+.++.||...|+.++|+..++....-+| |+++++.-..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~----~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchh----hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45568899999999999999999999976654    58999999999999999999999999986777 46676655555


Q ss_pred             Hhhh
Q 019243          249 RYIL  252 (344)
Q Consensus       249 LyIL  252 (344)
                      ...|
T Consensus       145 ~~kl  148 (153)
T d2fbna1         145 VNKL  148 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0013  Score=50.21  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l---GGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      +...+..|...+..|+|.+|++.++.++...|.+...   -+++-+-|..+|.+.|+.++||..+++-..-||++++...
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  117 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK  117 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence            4456778999999999999999999999866644332   2467777999999999999999999875558999998877


Q ss_pred             HHHHHhhh
Q 019243          245 AADLRYIL  252 (344)
Q Consensus       245 AK~LLyIL  252 (344)
                      -.++-.+|
T Consensus       118 l~~~~k~l  125 (128)
T d1elra_         118 CQQAEKIL  125 (128)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00088  Score=54.59  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd  238 (344)
                      +...+..|...+..|+|.+|+++|+.+++..|.    ...+.+.|+.+|...|+.++|+..|++..+-+|+
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            345667788899999999999999999986554    3678899999999999999999999988756775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0031  Score=50.36  Aligned_cols=76  Identities=18%  Similarity=0.040  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR  249 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~LL  249 (344)
                      ....|...+..|+|.+|+..++.++...|.    ...+-..++.+|...|+.++|+..|+....-+| |+.++..-..+.
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcccc----chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            445788899999999999999999997664    367889999999999999999999999987777 677665554444


Q ss_pred             h
Q 019243          250 Y  250 (344)
Q Consensus       250 y  250 (344)
                      .
T Consensus       141 ~  141 (170)
T d1p5qa1         141 Q  141 (170)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.0022  Score=52.84  Aligned_cols=75  Identities=23%  Similarity=0.126  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc------------------hHHHHHHHHHHHHHcCChHHHHH
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF------------------GGEIQIWLAMAYEANNRHADCIA  227 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l------------------GGEaQmwLatAYeA~Gq~ekAIA  227 (344)
                      ..|+..+..|..++..|++.+|++.|..+++..+..-..                  ..++-.-++.+|...|+.++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            457778889999999999999999999999876632111                  11556778899999999999999


Q ss_pred             HHHHHHhhCCCHH
Q 019243          228 LYKQLESNHPSKN  240 (344)
Q Consensus       228 LCq~L~~~HPd~q  240 (344)
                      .|+.+...+|..+
T Consensus        89 ~~~~al~~~P~~e  101 (179)
T d2ff4a2          89 ELEALTFEHPYRE  101 (179)
T ss_dssp             HHHHHHHHSTTCH
T ss_pred             HHHHHHHhCCccH
Confidence            9999987888655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.04  E-value=0.003  Score=51.94  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNI  241 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~-------~HPd~qV  241 (344)
                      ......+...+..|+|.+||..++.++...|.    .-.+...|+.||.+.|+..+|+..|+.+.+       -.|.+++
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~----~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY----REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            34567799999999999999999999997664    458889999999999999999999998631       4677888


Q ss_pred             HHHHHHHHh
Q 019243          242 RRQAADLRY  250 (344)
Q Consensus       242 RqQAK~LLy  250 (344)
                      +.-..++|.
T Consensus       144 ~~l~~~il~  152 (179)
T d2ff4a2         144 RALNERILR  152 (179)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            777666653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0033  Score=48.85  Aligned_cols=72  Identities=13%  Similarity=0.046  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      -++.|+...+.|-..|..|+|..|+..|+.++...|.    ...+-.-++.+|...|+.++|+..|+....-.|+.
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh----hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            3467778889999999999999999999999997664    46778899999999999999999999987556654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.96  E-value=0.0014  Score=57.50  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=56.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR  242 (344)
                      ++.||.+|+|.+||+.|+.++...|.    -..++..|+.+|+..|+.++|+..++.....+|+...-
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~----d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK----DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            67899999999999999999995554    46899999999999999999999999998778776543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0046  Score=49.16  Aligned_cols=63  Identities=21%  Similarity=0.070  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~-lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ..-.|+.++.+|+|.+|+++++.+++..|.+.. .-..+...++.+|...|+.++|+..++...
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334588999999999999999999998775433 334677788999999999999999998764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0012  Score=51.43  Aligned_cols=79  Identities=18%  Similarity=0.170  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243          169 QLMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (344)
Q Consensus       169 ~~~leaG~aALe---rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA  245 (344)
                      +..|.-|...+.   .|+|.+||.+|+.++...+.  +....+-+.|+.||...|+.++|+..+++...-.|+..   +|
T Consensus        34 ~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~--~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~---~A  108 (122)
T d1nzna_          34 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---QA  108 (122)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HH
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH---HH
Confidence            345666766665   35667899999999875443  22335778899999999999999999999987777754   45


Q ss_pred             HHHHhhh
Q 019243          246 ADLRYIL  252 (344)
Q Consensus       246 K~LLyIL  252 (344)
                      ..++..+
T Consensus       109 ~~l~~~I  115 (122)
T d1nzna_         109 KELERLI  115 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555533

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.85  E-value=0.0075  Score=47.30  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQ  244 (344)
                      +...+..|..-++.|+|.+||..+..+++..|.    ...+.+.++.||...|+.++|+..++....-.|+ +.+...
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh----hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            445566799999999999999999999986654    3578999999999999999999999998856654 344433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.82  E-value=0.0032  Score=49.16  Aligned_cols=69  Identities=17%  Similarity=0.062  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC---ch-----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FG-----GEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~---lG-----GEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      ...+-..+..|...|..|+|.+||+.++.+++..+....   ..     ..+-.-++.||...|+.++|+.-|+.-.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            344667788899999999999999999999986664322   11     2345568999999999999998888765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0041  Score=46.68  Aligned_cols=68  Identities=21%  Similarity=0.100  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      +..-+..|...+..|+|..||+.++.++...|.    -..+-+.++.+|...|+.++|+..++......|+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccc----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            456777899999999999999999999987664    34688999999999999999999999999666664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.0049  Score=47.67  Aligned_cols=62  Identities=11%  Similarity=-0.038  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +..-+..|...+..|+|..||..|+.+++..|.    ..++-+.++.+|...|+.++|+..+++..
T Consensus        38 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~----~~~a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445677899999999999999999999986554    35778899999999999999999999765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.013  Score=46.71  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      .+..-|..|...+..|+|..|++.|+.++...|.+    ..+-..|+.+|...|+.++||..|+.....+|+.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  104 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence            45678999999999999999999999999976653    5778889999999999999999999999778863

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.56  E-value=0.017  Score=45.48  Aligned_cols=66  Identities=14%  Similarity=0.077  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ..+..|..-+..|+|..||..++.++...|.    ...+-..++.||...|+.++|+..|+....-+|+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~----~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4556788899999999999999999997664    36889999999999999999999999998556543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0096  Score=49.08  Aligned_cols=62  Identities=21%  Similarity=0.309  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      +..|...+..|+|..|+..|+.++...|.    ...+...++.+|...|+.++|+..|++....+|
T Consensus       176 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         176 CGLGVLFNLSGEYDKAVDCFTAALSVRPN----DYLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhhHHHHHHHHHHhhhhcccccccccccc----cccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            34455555555555555555555554332    234444455555555555555555555443333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0073  Score=49.14  Aligned_cols=64  Identities=9%  Similarity=0.074  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      -..+..|..++++|+|..||+.++.+   .++    ..++-..++.+|...|+.++|+..|+.-....|+.
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~----~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~   69 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV---QDP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL   69 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS---SSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh
Confidence            34556666666666666666666542   111    12455566666666666666666666555444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.20  E-value=0.0066  Score=45.29  Aligned_cols=62  Identities=18%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      +..-+..|...+..|+|.+|+..|+.+++..|.    ..++.+.|+.+|...|+.++|+...++..
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhcccccccccccc----cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            445678899999999999999999999997765    35889999999999999999999887653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.20  E-value=0.0059  Score=47.95  Aligned_cols=70  Identities=9%  Similarity=0.023  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------------CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP------------TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~------------S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      ...+.|...+.+|+|..||..+..++...+..            .+.-..+-.-++.+|...|+.++||..|.+...-+|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  108 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  108 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence            34567888999999999999998887643311            122334456679999999999999999999985566


Q ss_pred             CH
Q 019243          238 SK  239 (344)
Q Consensus       238 d~  239 (344)
                      +.
T Consensus       109 ~~  110 (169)
T d1ihga1         109 SN  110 (169)
T ss_dssp             TC
T ss_pred             hh
Confidence            53

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.065  Score=43.24  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC------------chHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF------------FGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~------------lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~  235 (344)
                      +..-+..|...++.|+|.+|+..|+.++...+.+..            ...++..-++.+|...|+.++|+..++.-...
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            445677899999999999999999999876554322            23577788999999999999999998887645


Q ss_pred             CCCHHHH
Q 019243          236 HPSKNIR  242 (344)
Q Consensus       236 HPd~qVR  242 (344)
                      +|++...
T Consensus       150 ~~~~~~~  156 (192)
T d1hh8a_         150 KSEPRHS  156 (192)
T ss_dssp             CCSGGGG
T ss_pred             CCCcchH
Confidence            6776443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.79  E-value=0.14  Score=41.34  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      ++..+..|..++.+|+|.+|+++|+.+++.-      ...+++.|...|.-    ..+...|+..++... ..-++.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~~~   71 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSN   71 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccccc
Confidence            3567899999999999999999999998742      24788889999886    557788888888877 444543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.033  Score=46.82  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243          168 AQLMFELGQKAYG-KGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (344)
Q Consensus       168 a~~~leaG~aALe-rG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q  240 (344)
                      +......|...+. .|+|..|+++++.+++..+  .+.+..+.+..-++.+|...|+.++|+.+|+++...++...
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            4445566665555 4999999999999987544  33455678888899999999999999999999885555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.072  Score=42.01  Aligned_cols=62  Identities=11%  Similarity=-0.172  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (344)
Q Consensus       171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L  232 (344)
                      ....|......|++..|+.+++.++...+.+........+.++.+|...|+.++|+.+++..
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  277 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  277 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445555555666666666555555444444444455555555566666666555555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.22  E-value=0.055  Score=41.82  Aligned_cols=64  Identities=17%  Similarity=0.125  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-------chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-------FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (344)
Q Consensus       170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~-------lGGEaQmwLatAYeA~Gq~ekAIALCq~L~  233 (344)
                      .-...|...+..|+|..|++.++.++...+....       ....+..-++.+|...|+.++||..+++-.
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999976543222       234466778999999999999999999844

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.11  E-value=0.41  Score=39.81  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG---GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ  244 (344)
                      +...+..|...+..|+|.+|+++++.++...+......   ..+-..++.+|...|+..+|+..+......+|...-.+.
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre  237 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence            44567789999999999999999999988665443222   233456778899999999999999998756665444333


Q ss_pred             HHHHHhhhcC
Q 019243          245 AADLRYILQA  254 (344)
Q Consensus       245 AK~LLyILEA  254 (344)
                      .+-+..+++|
T Consensus       238 ~~~l~~l~~a  247 (290)
T d1qqea_         238 SNFLKSLIDA  247 (290)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4333344443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.1  Score=42.13  Aligned_cols=81  Identities=11%  Similarity=0.053  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243          167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (344)
Q Consensus       167 ~a~~~leaG~aALer---G~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq  243 (344)
                      ..+..|+-|-.....   .+.+.+|.+|+.++...|..   --..-..|+++|...|+.++|...|+.+....|+-.   
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~---~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~---  107 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---  107 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH---
Confidence            356778888888765   44578999999999854331   236779999999999999999999999996666653   


Q ss_pred             HHHHHHhhhc
Q 019243          244 QAADLRYILQ  253 (344)
Q Consensus       244 QAK~LLyILE  253 (344)
                      ||+.|...++
T Consensus       108 qA~~L~~~Ie  117 (124)
T d2pqrb1         108 QVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.36  Score=44.15  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCCHHHHHHHHH
Q 019243          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ-LESNHPSKNIRRQAAD  247 (344)
Q Consensus       169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~-L~~~HPd~qVRqQAK~  247 (344)
                      ...+..|..+..+|+|..|+.++..|+...|.    .|.+...|+.+|...|+..+|+.-|.. |...+|.+..+..=..
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~----~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~  228 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            45677899999999999999999999997654    578899999999999999999987754 4445777777776555


Q ss_pred             HH
Q 019243          248 LR  249 (344)
Q Consensus       248 LL  249 (344)
                      ++
T Consensus       229 ~~  230 (497)
T d1ya0a1         229 AL  230 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.31  E-value=0.25  Score=42.62  Aligned_cols=69  Identities=16%  Similarity=-0.019  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-------------------------------hHHHHHHHHHHH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-------------------------------GGEIQIWLAMAY  216 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l-------------------------------GGEaQmwLatAY  216 (344)
                      +...+..|+..+..|+|.+|++.|+.+++..|.....                               .-...+.++.++
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~  109 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS  109 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHH
Confidence            4556777888888899999999988888765532211                               113444555666


Q ss_pred             HHcCChHHHHHHHHHHHhhC
Q 019243          217 EANNRHADCIALYKQLESNH  236 (344)
Q Consensus       217 eA~Gq~ekAIALCq~L~~~H  236 (344)
                      ...|+.++|+++|+++....
T Consensus       110 ~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1         110 MVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC
T ss_pred             HhCCCHHHHHHHHHHHHhcC
Confidence            66666777776666665333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.11  Score=39.71  Aligned_cols=61  Identities=8%  Similarity=-0.042  Sum_probs=48.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCHH
Q 019243          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH---ADCIALYKQLESNHPSKN  240 (344)
Q Consensus       176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~---ekAIALCq~L~~~HPd~q  240 (344)
                      -..+..++|.+|.+.++.++...|.    ..++++-++.||...++.   ++||.+|+.+....|++.
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            3566788999999999999996654    468999999999876655   469999999984455554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.88  E-value=0.77  Score=33.09  Aligned_cols=65  Identities=18%  Similarity=0.015  Sum_probs=50.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (344)
Q Consensus       178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy  250 (344)
                      +|..=....++..|..++....+      .++..-+.|+...|. ++++.+...+. .+|++.||+.|-..|.
T Consensus        45 ~L~~~~~~~~~~~L~~~l~d~~~------~VR~~a~~aL~~i~~-~~~~~~L~~ll-~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          45 IIGNFQDERAVEPLIKLLEDDSG------FVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHGGGCSHHHHHHHHHHHHHCCT------HHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred             HHHhcchhhhHHHHHhhhccchh------HHHHHHHHHHHHhCc-cchHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence            34444567789999988875444      788888888888875 56777777787 8999999999988764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.38  Score=41.16  Aligned_cols=68  Identities=9%  Similarity=-0.071  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      ++.-+..|......|+|.+|++.+..++...|.+    ..+-..++.+|...|+.++|+..|++....+|+.
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n----~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            5566777999999999999999999999977664    4677778999999999999999999999778763

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.92  E-value=0.18  Score=42.28  Aligned_cols=59  Identities=12%  Similarity=-0.022  Sum_probs=47.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (344)
Q Consensus       175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP  237 (344)
                      |......|+|.+|+..|..++..    .|-...+.+.++.+|...|+.++|+..|+++..-.|
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQELEPE----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhh----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            44456668899999988887763    345568888999999999999999999999995444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.76  E-value=0.48  Score=42.49  Aligned_cols=66  Identities=21%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243          177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (344)
Q Consensus       177 aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L  248 (344)
                      .|+..|++..++.++..    ++.+.....+.+.|++.|+++.|+.++|..+++.+. .+++ =--.-|...
T Consensus       294 ~al~~~~~~~~~~~~~~----l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~~~~-fYG~LAa~~  359 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLAR----LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQRG-FYPMVAAQR  359 (450)
T ss_dssp             HHHHHTCHHHHHHHHHH----SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCS-HHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHh----cCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-cCCC-hHHHHHHHH
Confidence            47889999998888765    344555568999999999999999999999999998 6654 333334333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=1.1  Score=38.08  Aligned_cols=65  Identities=3%  Similarity=-0.037  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243          171 MFELGQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (344)
Q Consensus       171 ~leaG~aALerG-~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~  239 (344)
                      -+-.|......| +|..|+.+++.++...|.    ..++-..++.+|...|+.++||..|......+|+.
T Consensus        80 ~~~r~~~l~~l~~~~~eal~~~~~al~~~p~----~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          80 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh----hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            345566656655 699999999999997654    46888889999999999999999999998777763

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=81.22  E-value=3.5  Score=33.61  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHH-H--HHcCChHHHHHHHHHHHh---hCC
Q 019243          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMA-Y--EANNRHADCIALYKQLES---NHP  237 (344)
Q Consensus       166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l--GGEaQmwLatA-Y--eA~Gq~ekAIALCq~L~~---~HP  237 (344)
                      ++....|..|...|-+|+|=.|=+.||.+...++.+++.  --|.-|++|.| |  ...|+..-|..|+++-..   ..|
T Consensus        15 ~t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~   94 (145)
T d2ijqa1          15 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP   94 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            356678999999999999999999999999887766543  34555555555 4  488999999998876441   333


Q ss_pred             C-------HHHHHHHHHHHhhhcC
Q 019243          238 S-------KNIRRQAADLRYILQA  254 (344)
Q Consensus       238 d-------~qVRqQAK~LLyILEA  254 (344)
                      .       ..++.++.+++.-++.
T Consensus        95 ~~~~Gidv~~l~~~~~~~~~d~~~  118 (145)
T d2ijqa1          95 NDYYGVDLLDVRTTVTNALSDPSA  118 (145)
T ss_dssp             TTGGGBCHHHHHHHHHHHHHCGGG
T ss_pred             CccCCccHHHHHHHHHHHHhchhh
Confidence            2       3577777777765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.20  E-value=2.7  Score=31.99  Aligned_cols=58  Identities=24%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCCCHHHH
Q 019243          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIR  242 (344)
Q Consensus       181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-----------~ekAIALCq~L~~~HPd~qVR  242 (344)
                      .++|.+||+.++.++..-|.+    .++-..|..+|...|+           .++|+..++....-+|+..+-
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~----~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~  122 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKK----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  122 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchh----hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHH
Confidence            355678999999999876543    5677888888877664           588998888877678876643